Query 020170
Match_columns 330
No_of_seqs 311 out of 1757
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:35:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05320 rhodanese superfamily 99.9 2.8E-24 6.1E-29 202.7 7.6 202 49-269 25-234 (257)
2 PRK01415 hypothetical protein; 99.9 1.3E-24 2.8E-29 203.9 2.0 200 49-268 27-231 (247)
3 cd01518 RHOD_YceA Member of th 99.8 7.4E-21 1.6E-25 153.1 8.1 99 138-249 3-101 (101)
4 COG1054 Predicted sulfurtransf 99.8 1.3E-21 2.8E-26 186.2 2.5 211 47-275 25-239 (308)
5 PLN02160 thiosulfate sulfurtra 99.8 3.6E-20 7.9E-25 158.9 10.4 112 132-257 10-129 (136)
6 PRK00142 putative rhodanese-re 99.8 1.6E-20 3.5E-25 181.8 9.1 200 51-273 28-236 (314)
7 KOG1530 Rhodanese-related sulf 99.8 9E-20 2E-24 155.2 9.6 112 132-255 18-135 (136)
8 cd01533 4RHOD_Repeat_2 Member 99.8 1.5E-19 3.3E-24 147.5 9.8 100 136-251 9-109 (109)
9 cd01522 RHOD_1 Member of the R 99.8 4.5E-19 9.7E-24 147.5 10.1 108 139-255 1-116 (117)
10 PRK00162 glpE thiosulfate sulf 99.8 5.2E-19 1.1E-23 144.1 10.2 104 136-258 4-107 (108)
11 cd01523 RHOD_Lact_B Member of 99.8 5.8E-19 1.2E-23 141.6 9.3 96 139-248 1-99 (100)
12 cd01527 RHOD_YgaP Member of th 99.8 1.2E-18 2.5E-23 139.4 9.2 98 137-254 2-99 (99)
13 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 2.8E-18 6E-23 151.5 11.7 113 132-254 31-162 (162)
14 cd01534 4RHOD_Repeat_3 Member 99.7 4.1E-18 8.9E-23 135.8 8.9 94 139-249 1-95 (95)
15 COG0607 PspE Rhodanese-related 99.7 8.5E-18 1.8E-22 135.2 8.8 96 146-257 13-109 (110)
16 cd01526 RHOD_ThiF Member of th 99.7 9.4E-18 2E-22 140.1 8.5 107 136-254 7-118 (122)
17 cd01525 RHOD_Kc Member of the 99.7 1.5E-17 3.2E-22 133.9 7.5 100 139-248 1-104 (105)
18 cd01528 RHOD_2 Member of the R 99.7 3.5E-17 7.5E-22 131.7 9.4 97 138-249 1-98 (101)
19 cd01530 Cdc25 Cdc25 phosphatas 99.7 2.4E-17 5.1E-22 138.5 8.2 98 137-248 2-120 (121)
20 cd01519 RHOD_HSP67B2 Member of 99.7 4.3E-17 9.3E-22 131.2 9.3 99 140-249 2-106 (106)
21 cd01447 Polysulfide_ST Polysul 99.7 2.4E-17 5.2E-22 131.6 7.5 101 139-251 1-103 (103)
22 cd01444 GlpE_ST GlpE sulfurtra 99.7 5.6E-17 1.2E-21 128.1 9.4 94 139-249 2-96 (96)
23 cd01521 RHOD_PspE2 Member of t 99.7 8.7E-17 1.9E-21 131.8 9.7 100 137-254 8-110 (110)
24 cd01448 TST_Repeat_1 Thiosulfa 99.7 1.9E-16 4E-21 131.2 10.2 101 139-251 2-122 (122)
25 cd01520 RHOD_YbbB Member of th 99.7 1.6E-16 3.4E-21 134.0 9.5 98 139-249 1-126 (128)
26 smart00450 RHOD Rhodanese Homo 99.7 1.8E-16 3.9E-21 123.1 9.0 92 151-253 2-100 (100)
27 cd01449 TST_Repeat_2 Thiosulfa 99.7 1.4E-16 3.1E-21 130.7 7.3 101 139-249 1-118 (118)
28 cd01531 Acr2p Eukaryotic arsen 99.7 2.4E-16 5.1E-21 129.6 8.2 101 137-250 2-112 (113)
29 cd01524 RHOD_Pyr_redox Member 99.7 4E-16 8.6E-21 123.2 8.9 89 139-248 1-89 (90)
30 cd01535 4RHOD_Repeat_4 Member 99.7 4E-16 8.6E-21 135.3 9.4 100 144-261 2-101 (145)
31 PRK08762 molybdopterin biosynt 99.7 4.2E-16 9.2E-21 153.8 10.7 105 136-258 2-106 (376)
32 cd01529 4RHOD_Repeats Member o 99.7 3.6E-16 7.8E-21 124.7 8.1 86 151-249 10-96 (96)
33 cd01532 4RHOD_Repeat_1 Member 99.6 3.8E-16 8.3E-21 124.3 8.1 86 147-249 5-92 (92)
34 PF00581 Rhodanese: Rhodanese- 99.6 7E-16 1.5E-20 123.6 8.3 99 140-249 1-112 (113)
35 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 9.1E-16 2E-20 126.3 7.9 99 137-248 2-112 (113)
36 cd00158 RHOD Rhodanese Homolog 99.6 2E-15 4.3E-20 116.1 6.7 88 144-248 2-89 (89)
37 PRK07878 molybdopterin biosynt 99.6 5.7E-15 1.2E-19 146.8 10.0 103 136-254 286-388 (392)
38 TIGR02981 phageshock_pspE phag 99.6 1.4E-14 3.1E-19 118.7 8.6 81 152-249 17-97 (101)
39 PRK07411 hypothetical protein; 99.6 1.1E-14 2.3E-19 144.9 9.4 106 136-255 281-387 (390)
40 PRK10287 thiosulfate:cyanide s 99.5 2.2E-14 4.8E-19 118.3 8.0 81 152-249 19-99 (104)
41 PRK05600 thiamine biosynthesis 99.5 1.6E-14 3.5E-19 142.9 8.3 96 138-242 272-369 (370)
42 PRK11493 sseA 3-mercaptopyruva 99.5 1.5E-13 3.3E-18 130.4 10.5 109 138-257 6-136 (281)
43 PRK11493 sseA 3-mercaptopyruva 99.5 7.9E-14 1.7E-18 132.4 8.1 110 139-258 155-281 (281)
44 PRK09629 bifunctional thiosulf 99.5 2.2E-13 4.7E-18 142.6 10.8 108 138-257 10-130 (610)
45 PRK05597 molybdopterin biosynt 99.4 3.2E-13 7E-18 132.8 7.1 94 138-250 262-355 (355)
46 PLN02723 3-mercaptopyruvate su 99.4 9.6E-13 2.1E-17 127.6 10.2 109 137-257 22-152 (320)
47 cd01446 DSP_MapKP N-terminal r 99.4 1.3E-12 2.8E-17 110.2 9.3 101 139-249 2-126 (132)
48 PLN02723 3-mercaptopyruvate su 99.4 6.9E-13 1.5E-17 128.6 8.3 109 139-257 192-318 (320)
49 TIGR03167 tRNA_sel_U_synt tRNA 99.4 5.6E-13 1.2E-17 129.3 7.6 91 153-256 2-121 (311)
50 PRK11784 tRNA 2-selenouridine 99.4 9.3E-13 2E-17 129.4 8.1 103 140-255 4-134 (345)
51 PRK09629 bifunctional thiosulf 99.3 2.4E-12 5.2E-17 134.8 9.7 112 138-259 148-274 (610)
52 cd01445 TST_Repeats Thiosulfat 99.3 2.6E-11 5.6E-16 104.4 9.1 100 139-248 1-137 (138)
53 PRK01269 tRNA s(4)U8 sulfurtra 99.1 1.8E-10 3.9E-15 117.7 8.7 81 142-239 398-482 (482)
54 COG2897 SseA Rhodanese-related 99.0 6.2E-10 1.3E-14 107.0 9.1 109 139-257 158-283 (285)
55 KOG2017 Molybdopterin synthase 98.9 1.3E-09 2.9E-14 106.4 4.4 102 137-250 317-419 (427)
56 COG2897 SseA Rhodanese-related 98.7 1.3E-07 2.8E-12 91.1 10.5 108 138-256 12-138 (285)
57 KOG3772 M-phase inducer phosph 98.0 7.4E-06 1.6E-10 79.9 5.6 107 132-250 151-276 (325)
58 KOG1529 Mercaptopyruvate sulfu 97.4 0.001 2.2E-08 64.1 9.6 109 138-258 6-138 (286)
59 KOG1529 Mercaptopyruvate sulfu 96.8 0.0022 4.7E-08 61.9 5.8 94 151-249 170-275 (286)
60 TIGR01244 conserved hypothetic 96.4 0.014 2.9E-07 50.1 7.4 86 137-226 13-106 (135)
61 PF14159 CAAD: CAAD domains of 96.4 0.0038 8.3E-08 50.6 3.7 47 284-330 29-75 (90)
62 PF04273 DUF442: Putative phos 96.3 0.012 2.6E-07 49.2 6.6 85 137-225 13-105 (110)
63 COG5105 MIH1 Mitotic inducer, 95.3 0.027 5.8E-07 55.5 5.3 112 134-264 239-372 (427)
64 PLN02777 photosystem I P subun 94.3 0.028 6E-07 50.3 2.2 28 303-330 123-150 (167)
65 cd00127 DSPc Dual specificity 89.2 1.3 2.8E-05 36.6 6.4 71 151-230 26-108 (139)
66 smart00195 DSPc Dual specifici 88.6 1.9 4.2E-05 35.9 7.1 74 151-231 25-106 (138)
67 COG2603 Predicted ATPase [Gene 86.8 0.68 1.5E-05 45.4 3.6 81 152-242 14-124 (334)
68 PLN02727 NAD kinase 83.2 3 6.4E-05 46.6 6.9 88 137-227 267-364 (986)
69 PF13350 Y_phosphatase3: Tyros 78.8 7.6 0.00017 33.8 6.8 48 136-186 27-74 (164)
70 COG3453 Uncharacterized protei 73.9 14 0.0003 32.0 6.7 82 137-226 14-107 (130)
71 PF00782 DSPc: Dual specificit 66.9 8 0.00017 31.8 3.9 72 153-231 19-101 (133)
72 PF09992 DUF2233: Predicted pe 64.6 7.9 0.00017 33.7 3.6 39 204-242 98-141 (170)
73 PRK00142 putative rhodanese-re 58.4 1.3 2.8E-05 43.4 -2.7 83 139-235 16-105 (314)
74 PTZ00242 protein tyrosine phos 57.3 71 0.0015 28.2 8.4 26 204-229 96-123 (166)
75 PF01451 LMWPc: Low molecular 56.0 12 0.00025 31.4 3.0 34 209-242 1-39 (138)
76 PF05706 CDKN3: Cyclin-depende 55.3 17 0.00036 33.0 4.0 72 157-230 76-159 (168)
77 TIGR02689 ars_reduc_gluta arse 53.1 43 0.00094 27.9 6.0 50 207-256 1-58 (126)
78 PTZ00393 protein tyrosine phos 53.1 41 0.00089 32.1 6.4 70 152-231 116-197 (241)
79 PRK12361 hypothetical protein; 50.9 57 0.0012 34.1 7.7 84 139-227 108-198 (547)
80 COG0034 PurF Glutamine phospho 49.0 58 0.0013 34.0 7.1 88 205-312 347-437 (470)
81 PF10777 YlaC: Inner membrane 48.0 9.1 0.0002 34.1 1.1 68 103-174 29-97 (155)
82 TIGR00853 pts-lac PTS system, 48.0 23 0.0005 28.6 3.4 27 206-232 3-33 (95)
83 KOG1093 Predicted protein kina 42.0 5.7 0.00012 42.4 -1.3 92 138-242 623-716 (725)
84 KOG0333 U5 snRNP-like RNA heli 41.6 35 0.00075 36.4 4.3 47 194-241 505-551 (673)
85 PF13344 Hydrolase_6: Haloacid 41.1 50 0.0011 26.6 4.4 36 192-232 21-57 (101)
86 TIGR03167 tRNA_sel_U_synt tRNA 40.6 67 0.0015 31.5 6.0 72 138-221 137-211 (311)
87 PF14606 Lipase_GDSL_3: GDSL-l 40.3 47 0.001 30.2 4.5 82 134-239 42-144 (178)
88 smart00226 LMWPc Low molecular 39.3 43 0.00094 28.0 3.9 34 209-242 1-35 (140)
89 PF03853 YjeF_N: YjeF-related 38.9 41 0.00088 29.7 3.8 54 203-257 22-87 (169)
90 cd00133 PTS_IIB PTS_IIB: subun 38.4 34 0.00073 25.0 2.8 21 208-228 1-22 (84)
91 PF03162 Y_phosphatase2: Tyros 38.3 39 0.00086 29.9 3.7 26 203-228 88-114 (164)
92 PRK09590 celB cellobiose phosp 38.0 36 0.00079 28.1 3.2 26 207-232 2-31 (104)
93 cd05565 PTS_IIB_lactose PTS_II 36.5 38 0.00083 27.8 3.1 33 208-241 2-38 (99)
94 PRK10499 PTS system N,N'-diace 36.1 44 0.00096 27.5 3.4 22 206-227 3-24 (106)
95 COG0062 Uncharacterized conser 34.7 90 0.0019 29.0 5.5 27 206-232 49-78 (203)
96 PF04722 Ssu72: Ssu72-like pro 34.6 55 0.0012 30.4 4.0 29 208-237 3-32 (195)
97 PRK09246 amidophosphoribosyltr 34.0 1E+02 0.0023 32.2 6.5 87 205-311 357-446 (501)
98 COG1891 Uncharacterized protei 33.7 49 0.0011 30.6 3.5 28 137-166 6-33 (235)
99 PF02302 PTS_IIB: PTS system, 33.1 55 0.0012 25.0 3.4 25 208-232 1-30 (90)
100 PF08997 UCR_6-4kD: Ubiquinol- 33.0 45 0.00099 24.9 2.6 29 281-309 16-44 (56)
101 TIGR02691 arsC_pI258_fam arsen 32.5 1.2E+02 0.0025 25.6 5.5 47 209-255 1-55 (129)
102 PRK13530 arsenate reductase; P 32.4 84 0.0018 26.7 4.6 49 207-255 4-60 (133)
103 cd05564 PTS_IIB_chitobiose_lic 32.1 48 0.001 26.6 2.9 33 208-241 1-37 (96)
104 PRK07688 thiamine/molybdopteri 31.7 49 0.0011 32.7 3.5 36 136-172 276-316 (339)
105 PRK10126 tyrosine phosphatase; 31.7 70 0.0015 27.4 4.1 35 207-242 3-38 (147)
106 PRK15375 pathogenicity island 31.6 46 0.00099 35.3 3.4 104 57-164 16-131 (535)
107 cd00115 LMWPc Substituted upda 31.1 66 0.0014 27.1 3.8 35 208-242 2-38 (141)
108 PLN02918 pyridoxine (pyridoxam 31.1 83 0.0018 33.5 5.2 48 206-254 135-192 (544)
109 PLN03050 pyridoxine (pyridoxam 31.0 69 0.0015 30.3 4.2 27 206-232 60-89 (246)
110 TIGR00201 comF comF family pro 30.5 69 0.0015 28.6 4.0 33 205-237 151-186 (190)
111 PRK06781 amidophosphoribosyltr 29.3 1.8E+02 0.0039 30.3 7.3 88 204-311 346-436 (471)
112 PF07098 DUF1360: Protein of u 28.7 1.2E+02 0.0026 25.3 4.8 39 284-322 63-105 (105)
113 PF15086 UPF0542: Uncharacteri 28.3 77 0.0017 25.0 3.3 34 93-126 2-35 (74)
114 PRK10310 PTS system galactitol 27.3 72 0.0016 25.5 3.2 25 208-232 4-33 (94)
115 PRK11391 etp phosphotyrosine-p 26.2 1.1E+02 0.0025 26.2 4.4 35 207-242 3-38 (144)
116 cd00079 HELICc Helicase superf 25.7 1.2E+02 0.0025 23.9 4.2 37 205-242 27-63 (131)
117 PF04122 CW_binding_2: Putativ 25.7 89 0.0019 24.3 3.4 33 206-241 50-82 (92)
118 PRK14740 kdbF potassium-transp 25.2 74 0.0016 20.7 2.3 17 285-301 3-19 (29)
119 COG4822 CbiK Cobalamin biosynt 24.8 1.5E+02 0.0033 28.3 5.2 45 193-237 123-173 (265)
120 PRK07631 amidophosphoribosyltr 24.2 2.1E+02 0.0045 29.9 6.7 88 204-311 346-436 (475)
121 cd05566 PTS_IIB_galactitol PTS 23.9 93 0.002 23.9 3.2 25 207-231 1-30 (89)
122 PF02472 ExbD: Biopolymer tran 23.9 2.7E+02 0.0059 22.6 6.2 44 193-236 78-125 (130)
123 COG2085 Predicted dinucleotide 23.7 4E+02 0.0087 25.0 7.8 35 206-242 147-182 (211)
124 TIGR02804 ExbD_2 TonB system t 23.4 2.8E+02 0.006 23.0 6.1 34 204-237 82-118 (121)
125 cd05567 PTS_IIB_mannitol PTS_I 23.3 97 0.0021 24.1 3.2 25 207-231 1-30 (87)
126 PRK11267 biopolymer transport 23.2 2.1E+02 0.0045 24.5 5.5 44 195-238 88-134 (141)
127 PRK13755 putative mercury tran 22.8 1.8E+02 0.0038 25.4 4.8 34 283-316 27-63 (139)
128 COG1077 MreB Actin-like ATPase 22.5 1.5E+02 0.0033 29.8 4.9 58 206-266 100-161 (342)
129 COG1440 CelA Phosphotransferas 22.3 92 0.002 26.1 2.9 23 207-229 2-24 (102)
130 TIGR00640 acid_CoA_mut_C methy 22.1 2.2E+02 0.0049 24.2 5.4 48 206-253 53-107 (132)
131 PF00156 Pribosyltran: Phospho 22.0 1.6E+02 0.0035 23.5 4.4 33 204-236 86-121 (125)
132 PF03610 EIIA-man: PTS system 21.7 2.1E+02 0.0045 23.3 5.0 45 193-239 43-90 (116)
133 COG2453 CDC14 Predicted protei 21.7 1.3E+02 0.0028 26.8 4.0 28 204-231 103-133 (180)
134 COG3088 CcmH Uncharacterized p 21.4 47 0.001 29.7 1.1 52 69-124 59-113 (153)
135 PF02590 SPOUT_MTase: Predicte 21.3 1.2E+02 0.0027 26.7 3.8 41 204-244 65-110 (155)
136 PF02863 Arg_repressor_C: Argi 21.3 1.3E+02 0.0029 22.8 3.5 25 204-228 45-69 (70)
137 PF01488 Shikimate_DH: Shikima 21.2 1.6E+02 0.0034 24.8 4.3 34 204-238 10-43 (135)
138 cd05563 PTS_IIB_ascorbate PTS_ 20.7 1.1E+02 0.0023 23.4 2.9 24 209-232 2-30 (86)
139 PRK07199 phosphoribosylpyropho 20.7 1.3E+02 0.0027 29.4 4.0 33 205-237 210-245 (301)
140 PLN03049 pyridoxine (pyridoxam 20.6 1.8E+02 0.004 30.2 5.4 27 206-232 59-88 (462)
141 TIGR00197 yjeF_nterm yjeF N-te 20.3 1.6E+02 0.0035 26.8 4.4 33 205-238 44-79 (205)
No 1
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.90 E-value=2.8e-24 Score=202.67 Aligned_cols=202 Identities=13% Similarity=0.062 Sum_probs=137.2
Q ss_pred HHHHHhhhhhhchheecccccchhhccccHHHHHHhhhcCCCCCCChhHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHH
Q 020170 49 FLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTILAVPLVLSQ 128 (330)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~F~~~npvlva~~v~~~~l~~v~~~ 128 (330)
+.-|-..++.|||||+.||||+++|.|....+++...+.. ++.++.+... ++....+|+--+-.-+. =+++...
T Consensus 25 ~~~~~~~~~~G~i~ia~eGiN~t~~g~~~~id~~~~~l~~---~~~~~dl~~k-~~~~~~~pF~~l~vk~k--~eiv~~g 98 (257)
T PRK05320 25 LARCEALGLKGTILLAPEGINLFLAGTREAIDAFYAWLRA---DARFADLQVK-ESLSDSQPFRRMLVKLK--REIITMK 98 (257)
T ss_pred HHHHHHCCCeEEEEEcCCCceEEEEeeHHHHHHHHHHHhh---CCCccCceee-cccccCCCchhccchhh--hHHhhcC
Confidence 4456778999999999999999999999888888877764 2333333221 13334455432111110 0111000
Q ss_pred --HhcCC-CCCcccCHHHHHHHhcCC-----CCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhh
Q 020170 129 --VLNKP-KSWGVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLK 200 (330)
Q Consensus 129 --~~~~~-~~~g~Is~~ea~~ll~~~-----~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~ 200 (330)
..+.. .....++++++.+++++. ++.++||||+++||+. ||+ +||+|||+..+. .+...+...
T Consensus 99 ~~~~n~~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~-Ghi------~GAiniPl~~f~--~~~~~l~~~ 169 (257)
T PRK05320 99 RPAIRPELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDV-GTF------DGALDYRIDKFT--EFPEALAAH 169 (257)
T ss_pred CcccCcccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHcc-Ccc------CCCEeCChhHhh--hhHHHHHhh
Confidence 01111 123569999999998742 3589999999999986 888 499999986432 122223221
Q ss_pred cCCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCCCCCCCcccCcchhh
Q 020170 201 FKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLT 269 (330)
Q Consensus 201 ~~~~kdk~IVv~C~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~~~kk~~~ldl~r~~ 269 (330)
....++++|++||++|.||.+|++.|++.||++||+|+|||. +|.+.--.-.-.++.|+|| +|..
T Consensus 170 ~~~~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~---~w~~~~~~~~~~G~~fVFD-~R~~ 234 (257)
T PRK05320 170 RADLAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGIL---KYFEEVGGAHYDGDCFVFD-YRTA 234 (257)
T ss_pred hhhcCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHH---HHHHhCCCCeeeeeeeeec-Ceee
Confidence 112378999999999999999999999999999999999997 9987422212346789999 7764
No 2
>PRK01415 hypothetical protein; Validated
Probab=99.89 E-value=1.3e-24 Score=203.90 Aligned_cols=200 Identities=10% Similarity=0.091 Sum_probs=136.3
Q ss_pred HHHHHhhhhhhchheecccccchhhccccHHHHHHhhhcCCCCCCChhHHHHHHHHhhhhcHHHHHHHHHH--HHHHHHH
Q 020170 49 FLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTI--LAVPLVL 126 (330)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~F~~~npvlva~~v~~--~~l~~v~ 126 (330)
+.-|-..++.|||||+.||||+++|.|....+++.+.+.+.+ .+..+--.+ +....+|+--+-+-.- ++ .+=.
T Consensus 27 ~~~~~~~~~~G~i~la~EGIN~tisg~~~~~~~~~~~l~~~~---~~~~~~~k~-s~~~~~~F~~l~vr~k~eiV-~~g~ 101 (247)
T PRK01415 27 LLIGKRKYVRGTILLANEGFNGSFSGSYENVNLVLEELIKLT---GPKDVNVKI-NYSDVHPFQKLKVRLKKEIV-AMNV 101 (247)
T ss_pred HHHHHHcCCeeEEEEccCccceEeeCCHHHHHHHHHHHHhCc---CCCCceeec-ccccCCCCCccEEEeeceEE-ecCC
Confidence 456778899999999999999999999888888877776532 222211111 1223344321110000 00 0000
Q ss_pred HHHhcCCCCCcccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCC-cchHHHhhhhcCCCC
Q 020170 127 SQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK-PGFLKKLSLKFKEPE 205 (330)
Q Consensus 127 ~~~~~~~~~~g~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~-~~fl~~L~~~~~~~k 205 (330)
............|+|+++.++++ ++++++||||++.||+. ||+ +||+|+|+..+.+ +.+.++.. ..++
T Consensus 102 ~~~~~~~~~g~~i~p~e~~~ll~-~~~~vvIDVRn~~E~~~-Ghi------~gAinip~~~f~e~~~~~~~~~---~~~k 170 (247)
T PRK01415 102 DDLNVDLFKGEYIEPKDWDEFIT-KQDVIVIDTRNDYEVEV-GTF------KSAINPNTKTFKQFPAWVQQNQ---ELLK 170 (247)
T ss_pred CCCCccccCccccCHHHHHHHHh-CCCcEEEECCCHHHHhc-CCc------CCCCCCChHHHhhhHHHHhhhh---hhcC
Confidence 00110111235699999999997 68899999999999996 888 4999999764321 11121111 2478
Q ss_pred CCeEEEEeCCCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCC--CCCCCCcccCcchh
Q 020170 206 NTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW--IPPKKALGLDLSNL 268 (330)
Q Consensus 206 dk~IVv~C~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv--~~~kk~~~ldl~r~ 268 (330)
+++|++||++|.||.+|+..|+++||++||+|+||+. +|.+..-+- .-.++.|+|| +|.
T Consensus 171 ~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~---~w~~~~~~~~~~w~G~~fVFD-~R~ 231 (247)
T PRK01415 171 GKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGIL---QYLEDTQNKNNLWQGECFVFD-DRR 231 (247)
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHH---HHHHhcccCCCeeeeeeeeeC-cee
Confidence 9999999999999999999999999999999999998 998864432 2246789999 775
No 3
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.83 E-value=7.4e-21 Score=153.09 Aligned_cols=99 Identities=21% Similarity=0.212 Sum_probs=82.1
Q ss_pred ccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCCCc
Q 020170 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (330)
Q Consensus 138 ~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~sG~ 217 (330)
.|+++++.++++ +++.++||||++.||+. ||+ +||+|||+.++.+ +...+....+.+++++||+||++|.
T Consensus 3 ~is~~~l~~~~~-~~~~~iiDvR~~~e~~~-ghi------~gA~~ip~~~~~~--~~~~~~~~~~~~~~~~ivvyC~~G~ 72 (101)
T cd01518 3 YLSPAEWNELLE-DPEVVLLDVRNDYEYDI-GHF------KGAVNPDVDTFRE--FPFWLDENLDLLKGKKVLMYCTGGI 72 (101)
T ss_pred cCCHHHHHHHHc-CCCEEEEEcCChhhhhc-CEe------ccccCCCcccHhH--hHHHHHhhhhhcCCCEEEEECCCch
Confidence 589999999997 67899999999999996 777 4999999975431 2223322122378999999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEccCCCCChHHHhh
Q 020170 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (330)
Q Consensus 218 RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~ 249 (330)
||..++..|+++||++||+|.||+. +|.+
T Consensus 73 rs~~a~~~L~~~G~~~v~~l~GG~~---~W~~ 101 (101)
T cd01518 73 RCEKASAYLKERGFKNVYQLKGGIL---KYLE 101 (101)
T ss_pred hHHHHHHHHHHhCCcceeeechhHH---HHhC
Confidence 9999999999999999999999997 9964
No 4
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.83 E-value=1.3e-21 Score=186.19 Aligned_cols=211 Identities=16% Similarity=0.129 Sum_probs=145.0
Q ss_pred hhHHHHHhhhhhhchheecccccchhhccccHHHHHHhhhcCCCCCCChhHHHHHHHHhhhhcHHHHHHHHHH--HHHHH
Q 020170 47 QNFLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTI--LAVPL 124 (330)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~F~~~npvlva~~v~~--~~l~~ 124 (330)
+-++-|-+.++.||||||+||||+++|.+....|++.+-+.+.+ .++.+.-.+ +....+|+.-+-+-.= ++ .+
T Consensus 25 ~l~~~~~~~~vkGrillA~EGINgtvsG~~e~~~~~~~~l~a~~---~f~~l~~K~-s~~~~~pF~r~kVk~kkEIV-~l 99 (308)
T COG1054 25 PLLALCKALGVKGRILLAHEGINGTVSGSAEAIEAYMAWLRADP---GFADLRFKI-SEADEKPFWRLKVKLKKEIV-AL 99 (308)
T ss_pred HHHHHHHHcCceeEEEEccCCcceeEecCHHHHHHHHHHHHhCc---ccccceeee-ccccCCCcceEEEeehhhhe-ec
Confidence 34677889999999999999999999999999999999998753 444442221 2233455432211000 00 00
Q ss_pred HHHHHhcCCCCCc-ccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCC
Q 020170 125 VLSQVLNKPKSWG-VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKE 203 (330)
Q Consensus 125 v~~~~~~~~~~~g-~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~ 203 (330)
=...-.......| -|+|+|+.+++. +++.++||+|+..||+. ||. +||++.+....+ +|-+.+.+....
T Consensus 100 g~~ddv~p~~~vG~yl~p~~wn~~l~-D~~~vviDtRN~YE~~i-G~F------~gAv~p~~~tFr--efP~~v~~~~~~ 169 (308)
T COG1054 100 GVEDDVDPLENVGTYLSPKDWNELLS-DPDVVVIDTRNDYEVAI-GHF------EGAVEPDIETFR--EFPAWVEENLDL 169 (308)
T ss_pred CCCCCcCccccccCccCHHHHHHHhc-CCCeEEEEcCcceeEee-eee------cCccCCChhhhh--hhHHHHHHHHHh
Confidence 0000011112223 399999999997 78999999999999995 998 599998865432 233333322224
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEccCCCCCh-HHHhhCCCCCCCCCCCcccCcchhhHHHhhh
Q 020170 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGP-RGWMNSGLPWIPPKKALGLDLSNLTETISGA 275 (330)
Q Consensus 204 ~kdk~IVv~C~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~-~aW~~aGLPv~~~kk~~~ldl~r~~~~i~~~ 275 (330)
.++|+|++||..|.|++++..+|+..||++||+|+|||..| ..-...|.-| .++-|+|| +|+...++-.
T Consensus 170 ~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~~~~~g~lw--~G~cFVFD-eRvav~~~l~ 239 (308)
T COG1054 170 LKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLEDVGTEGSLW--DGKCFVFD-ERVAVPIGLV 239 (308)
T ss_pred ccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhhhcCccCcee--ccceeEec-ceecccCccc
Confidence 57889999999999999999999999999999999999833 1111223212 35789999 8887665433
No 5
>PLN02160 thiosulfate sulfurtransferase
Probab=99.82 E-value=3.6e-20 Score=158.88 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=90.9
Q ss_pred CCCCCcccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCc--EEeccCC------CCCcchHHHhhhhcCC
Q 020170 132 KPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRP--VSIVYKG------DDKPGFLKKLSLKFKE 203 (330)
Q Consensus 132 ~~~~~g~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gA--inIPl~~------~~~~~fl~~L~~~~~~ 203 (330)
+......++++++.++++ + +.++||||++.||.. ||+ +|| +|+|+.. +.++++..++... .
T Consensus 10 ~~~~~~~i~~~e~~~~~~-~-~~~lIDVR~~~E~~~-ghI------pgA~~iniP~~~~~~~~~l~~~~~~~~~~~~--~ 78 (136)
T PLN02160 10 KAEEVVSVDVSQAKTLLQ-S-GHQYLDVRTQDEFRR-GHC------EAAKIVNIPYMLNTPQGRVKNQEFLEQVSSL--L 78 (136)
T ss_pred CceeeeEeCHHHHHHHHh-C-CCEEEECCCHHHHhc-CCC------CCcceecccchhcCcccccCCHHHHHHHHhc--c
Confidence 444467799999999986 3 468999999999996 887 488 8999742 2223344444322 3
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCCCC
Q 020170 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (330)
Q Consensus 204 ~kdk~IVv~C~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~~~ 257 (330)
+++++||+||++|.||..|++.|.+.||++||++.||+. +|+++|+|++..
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~---~W~~~g~p~~~~ 129 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL---AWVDHSFPINQE 129 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH---HHhhCCCCcccc
Confidence 678999999999999999999999999999999999997 999999999864
No 6
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.82 E-value=1.6e-20 Score=181.77 Aligned_cols=200 Identities=12% Similarity=0.136 Sum_probs=133.5
Q ss_pred HHHhhhhhhchheecccccchhhccccHHHHHHhhhcCCC--CCCChhHHHHHHHHhhhhcHHHHH--HH---HHHHHHH
Q 020170 51 ECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSA--SDVDASGFIDSVISFGTENPLAIA--GG---VTILAVP 123 (330)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~F~~~npvlva--~~---v~~~~l~ 123 (330)
.|..-.+-|+++++.+|||++|+.|....++....+...+ .++++. .+.-..+++--+ -. ++.+.+.
T Consensus 28 ~~~~~d~rg~i~~a~egIngtis~~~~~~~~~~~~l~~~~~~~~i~l~------~~~~~~~~f~~l~~~~~~eLv~~G~d 101 (314)
T PRK00142 28 LCKSLGLKGRILVAEEGINGTVSGTIEQTEAYMAWLKADPRFADIRFK------ISEDDGHAFPRLSVKVRKEIVALGLD 101 (314)
T ss_pred HHHHcCCeeEEEEcCCCceEEEEecHHHHHHHHHHHhhCcCCCCceEE------eccccCCCcccceeeeeeeeeecCCC
Confidence 3446678899999999999999999866666666555431 122221 011111222000 00 0000000
Q ss_pred HHHHHHhcCCCCCcccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCC
Q 020170 124 LVLSQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKE 203 (330)
Q Consensus 124 ~v~~~~~~~~~~~g~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~ 203 (330)
.+...-......++++++.++++ +++.++||||++.||+. ||+ +||+|+|+..+. ++...+...+..
T Consensus 102 ---~~v~~~~~~~~~is~~el~~~l~-~~~~vlIDVR~~~E~~~-GhI------~GAi~ip~~~~~--~~~~~l~~~~~~ 168 (314)
T PRK00142 102 ---DDIDPLENVGTYLKPKEVNELLD-DPDVVFIDMRNDYEYEI-GHF------ENAIEPDIETFR--EFPPWVEENLDP 168 (314)
T ss_pred ---CCCCccccCCcccCHHHHHHHhc-CCCeEEEECCCHHHHhc-CcC------CCCEeCCHHHhh--hhHHHHHHhcCC
Confidence 00000002235699999999997 67899999999999996 888 599999987543 233333322334
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCC--CCCCCCcccCcchhhHHHh
Q 020170 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW--IPPKKALGLDLSNLTETIS 273 (330)
Q Consensus 204 ~kdk~IVv~C~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv--~~~kk~~~ldl~r~~~~i~ 273 (330)
.++++||+||++|.||..|+..|+++||++||+|+||+. +|.+.=-+- .-.++.|+|| +|+...++
T Consensus 169 ~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~---~w~~~~~~~~~~w~G~~fVFD-~R~~~~~~ 236 (314)
T PRK00142 169 LKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGII---TYGEDPETQGLLWDGKLYVFD-ERMAVPIN 236 (314)
T ss_pred CCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHH---HHHHhhccccceeecCCcccc-CcccCCCC
Confidence 689999999999999999999999999999999999998 897742221 2346899999 88874443
No 7
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.81 E-value=9e-20 Score=155.24 Aligned_cols=112 Identities=23% Similarity=0.320 Sum_probs=96.2
Q ss_pred CCCCCcccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCC------CCCcchHHHhhhhcCCCC
Q 020170 132 KPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKG------DDKPGFLKKLSLKFKEPE 205 (330)
Q Consensus 132 ~~~~~g~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~------~~~~~fl~~L~~~~~~~k 205 (330)
+.+....++..+++++++ .++.++||||+|+||.+ ||+ +.++||||.. +.++.|.+++...+ .+.
T Consensus 18 ~~~~~~sv~~~qvk~L~~-~~~~~llDVRepeEfk~-gh~------~~siNiPy~~~~~~~~l~~~eF~kqvg~~k-p~~ 88 (136)
T KOG1530|consen 18 KASNPQSVSVEQVKNLLQ-HPDVVLLDVREPEEFKQ-GHI------PASINIPYMSRPGAGALKNPEFLKQVGSSK-PPH 88 (136)
T ss_pred ccCCcEEEEHHHHHHHhc-CCCEEEEeecCHHHhhc-cCC------cceEeccccccccccccCCHHHHHHhcccC-CCC
Confidence 334457899999999997 67799999999999997 666 3899999952 45778988886432 456
Q ss_pred CCeEEEEeCCCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCC
Q 020170 206 NTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWI 255 (330)
Q Consensus 206 dk~IVv~C~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~ 255 (330)
|++||++|++|.||..|.+.|..+||+||-++.||+. +|.+.++|..
T Consensus 89 d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~---~W~~k~~~~~ 135 (136)
T KOG1530|consen 89 DKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYL---AWVDKGGPKK 135 (136)
T ss_pred CCcEEEEeccCcchhHHHHHHHHcCcccccccCccHH---HHHHccCCCC
Confidence 7899999999999999999999999999999999997 9999998864
No 8
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.80 E-value=1.5e-19 Score=147.54 Aligned_cols=100 Identities=20% Similarity=0.180 Sum_probs=83.0
Q ss_pred CcccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCC
Q 020170 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (330)
Q Consensus 136 ~g~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~s 215 (330)
...++++++.++++++++.++||||++.||.. ||+ +||+|+|+.+ +...+.. +..+++++||+||++
T Consensus 9 ~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~-ghI------pgainip~~~-----l~~~~~~-l~~~~~~~ivv~C~~ 75 (109)
T cd01533 9 TPSVSADELAALQARGAPLVVLDGRRFDEYRK-MTI------PGSVSCPGAE-----LVLRVGE-LAPDPRTPIVVNCAG 75 (109)
T ss_pred CCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhc-CcC------CCceeCCHHH-----HHHHHHh-cCCCCCCeEEEECCC
Confidence 46799999999997544689999999999997 777 4999999863 2222221 224678999999999
Q ss_pred CchHHHHHHHHHHcCCCc-EEEccCCCCChHHHhhCC
Q 020170 216 DGNSELVAELVTINGFKN-AYTIKDGAEGPRGWMNSG 251 (330)
Q Consensus 216 G~RS~~AA~~L~~~Gf~~-Vy~L~GGi~g~~aW~~aG 251 (330)
|.||..++..|++.||++ |+++.||+. +|+.+|
T Consensus 76 G~rs~~a~~~L~~~G~~~~v~~l~gG~~---~W~~~g 109 (109)
T cd01533 76 RTRSIIGAQSLINAGLPNPVAALRNGTQ---GWTLAG 109 (109)
T ss_pred CchHHHHHHHHHHCCCCcceeEecCCHH---HHHhcC
Confidence 999999999999999998 999999997 999876
No 9
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.79 E-value=4.5e-19 Score=147.54 Aligned_cols=108 Identities=27% Similarity=0.426 Sum_probs=88.6
Q ss_pred cCHHHHHHHhcCCCCcEEEEeCChhhhh-hcCCCCCCCCCCCcEEeccCCCCC----cchHHHhhhhcCCCCCCeEEEEe
Q 020170 139 ESARNAYAKLGDDASAQLLDIRAPVEFR-QVGSPDVRGLGKRPVSIVYKGDDK----PGFLKKLSLKFKEPENTTLFILD 213 (330)
Q Consensus 139 Is~~ea~~ll~~~~~avLIDVR~~~Ef~-~~Ghp~l~~~~~gAinIPl~~~~~----~~fl~~L~~~~~~~kdk~IVv~C 213 (330)
||++++.++++++++.++||||+++||+ . ||+ +||+|+|+.++.+ ..+...+... .+++++||+||
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~-ghI------pgA~~ip~~~~~~~~~~~~~~~~l~~~--~~~~~~ivv~C 71 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFV-GGV------PDAVHVAWQVYPDMEINPNFLAELEEK--VGKDRPVLLLC 71 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcc-cCC------CCceecchhhccccccCHHHHHHHHhh--CCCCCeEEEEc
Confidence 6899999999855689999999999999 7 676 4999999875332 2344444432 26789999999
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEccCCCCCh---HHHhhCCCCCC
Q 020170 214 KFDGNSELVAELVTINGFKNAYTIKDGAEGP---RGWMNSGLPWI 255 (330)
Q Consensus 214 ~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~---~aW~~aGLPv~ 255 (330)
++|.||..+++.|++.||++++++.||++++ ++|+...+||.
T Consensus 72 ~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~~~~~~~~~~~~ 116 (117)
T cd01522 72 RSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDAAGHRGGVNGWR 116 (117)
T ss_pred CCCccHHHHHHHHHHCCCCeEEECcCceecCCCCCCcccccCCCC
Confidence 9999999999999999999999999999977 66777777774
No 10
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.79 E-value=5.2e-19 Score=144.15 Aligned_cols=104 Identities=20% Similarity=0.304 Sum_probs=88.6
Q ss_pred CcccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCC
Q 020170 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (330)
Q Consensus 136 ~g~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~s 215 (330)
++.++++++.++++ +++.++||||+++||+. ||+ +|++|+|+.. +.+.+.. .++++++++||.+
T Consensus 4 ~~~is~~el~~~l~-~~~~~ivDvR~~~e~~~-ghi------~gA~~ip~~~-----l~~~~~~---~~~~~~ivv~c~~ 67 (108)
T PRK00162 4 FECINVEQAHQKLQ-EGGAVLVDIRDPQSFAM-GHA------PGAFHLTNDS-----LGAFMRQ---ADFDTPVMVMCYH 67 (108)
T ss_pred ccccCHHHHHHHHH-cCCCEEEEcCCHHHHhc-CCC------CCCeECCHHH-----HHHHHHh---cCCCCCEEEEeCC
Confidence 46799999999996 45789999999999996 777 4999999753 2233321 3678999999999
Q ss_pred CchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCCCCC
Q 020170 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (330)
Q Consensus 216 G~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~~~k 258 (330)
|.||..+++.|++.||++|++++||+. +|+..++|+++.+
T Consensus 68 g~~s~~a~~~L~~~G~~~v~~l~GG~~---~w~~~~~~~~~~~ 107 (108)
T PRK00162 68 GNSSQGAAQYLLQQGFDVVYSIDGGFE---AWRRTFPAEVASG 107 (108)
T ss_pred CCCHHHHHHHHHHCCchheEEecCCHH---HHHhcCCCccCCC
Confidence 999999999999999999999999998 9999999998753
No 11
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.78 E-value=5.8e-19 Score=141.62 Aligned_cols=96 Identities=20% Similarity=0.352 Sum_probs=78.5
Q ss_pred cCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchH---HHhhhhcCCCCCCeEEEEeCC
Q 020170 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFL---KKLSLKFKEPENTTLFILDKF 215 (330)
Q Consensus 139 Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl---~~L~~~~~~~kdk~IVv~C~s 215 (330)
|+++++.+++++++++++||||+++||+. ||+ +||+|+|+..+.. .+. .+.... .+++++||+||++
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~-ghi------~ga~~ip~~~~~~-~~~~~~~~~~~~--~~~~~~ivv~C~~ 70 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYER-WKI------DGENNTPYFDPYF-DFLEIEEDILDQ--LPDDQEVTVICAK 70 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhh-ccc------CCCcccccccchH-HHHHhhHHHHhh--CCCCCeEEEEcCC
Confidence 58899999997556789999999999997 777 4999999875422 111 111111 3678999999999
Q ss_pred CchHHHHHHHHHHcCCCcEEEccCCCCChHHHh
Q 020170 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (330)
Q Consensus 216 G~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~ 248 (330)
|.||..+++.|++.||+ +|+|+||+. +|+
T Consensus 71 G~rs~~aa~~L~~~G~~-~~~l~GG~~---~W~ 99 (100)
T cd01523 71 EGSSQFVAELLAERGYD-VDYLAGGMK---AWS 99 (100)
T ss_pred CCcHHHHHHHHHHcCce-eEEeCCcHH---hhc
Confidence 99999999999999998 999999998 996
No 12
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.77 E-value=1.2e-18 Score=139.37 Aligned_cols=98 Identities=19% Similarity=0.232 Sum_probs=83.5
Q ss_pred cccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCCC
Q 020170 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFD 216 (330)
Q Consensus 137 g~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~sG 216 (330)
..++++++.+++++ +.++||||+++||.. ||+ +||+|+|+.++.+ ... ..+++++||+||++|
T Consensus 2 ~~i~~~el~~~~~~--~~~liDvR~~~e~~~-~hi------~ga~~ip~~~~~~-----~~~---~~~~~~~iv~~c~~g 64 (99)
T cd01527 2 TTISPNDACELLAQ--GAVLVDIREPDEYLR-ERI------PGARLVPLSQLES-----EGL---PLVGANAIIFHCRSG 64 (99)
T ss_pred CccCHHHHHHHHHC--CCEEEECCCHHHHHh-CcC------CCCEECChhHhcc-----ccc---CCCCCCcEEEEeCCC
Confidence 35899999999873 389999999999986 777 4999999875321 111 246789999999999
Q ss_pred chHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCC
Q 020170 217 GNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (330)
Q Consensus 217 ~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv 254 (330)
.||..++..|.+.||++|+++.||+. +|+..|+|+
T Consensus 65 ~~s~~~~~~L~~~g~~~v~~l~gG~~---~W~~~~~~~ 99 (99)
T cd01527 65 MRTQQNAERLAAISAGEAYVLEGGLD---AWKAAGLPV 99 (99)
T ss_pred chHHHHHHHHHHcCCccEEEeeCCHH---HHHHCcCCC
Confidence 99999999999999999999999998 999999985
No 13
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.77 E-value=2.8e-18 Score=151.50 Aligned_cols=113 Identities=20% Similarity=0.196 Sum_probs=87.5
Q ss_pred CCCCCcccCHHHHHHHhcCCCCcEEEEeCChh----hhhhc--------CCCCCCCCCCCcEEeccC---CCCCc---ch
Q 020170 132 KPKSWGVESARNAYAKLGDDASAQLLDIRAPV----EFRQV--------GSPDVRGLGKRPVSIVYK---GDDKP---GF 193 (330)
Q Consensus 132 ~~~~~g~Is~~ea~~ll~~~~~avLIDVR~~~----Ef~~~--------Ghp~l~~~~~gAinIPl~---~~~~~---~f 193 (330)
..+++..|+++++.++++ +++.++||||+++ ||... +|| +||+|+|+. .+..+ .|
T Consensus 31 ~~~~~~~vs~~el~~~l~-~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HI------PGAv~ip~~~~~~l~~~~~~~~ 103 (162)
T TIGR03865 31 TLKGARVLDTEAAQALLA-RGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNI------PGSLWLPNTGYGNLAPAWQAYF 103 (162)
T ss_pred ccCCccccCHHHHHHHHh-CCCcEEEECCCCccccccccccceeccccCCCC------CCcEEecccCCCCCCCchhHHH
Confidence 344567899999999997 5679999999876 46531 255 599999963 22221 23
Q ss_pred HHHhhhhcCCCCCCeEEEEeCCCc-hHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCC
Q 020170 194 LKKLSLKFKEPENTTLFILDKFDG-NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (330)
Q Consensus 194 l~~L~~~~~~~kdk~IVv~C~sG~-RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv 254 (330)
.+.+.+....++|++||+||++|. ||..++..|+++||++||++.||+. +|+.+|+|+
T Consensus 104 ~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~---aW~~aG~Pv 162 (162)
T TIGR03865 104 RRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTD---GWQAAGLPL 162 (162)
T ss_pred HHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHH---HHHHcCCCC
Confidence 344432212368999999999997 8999999999999999999999998 999999995
No 14
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.75 E-value=4.1e-18 Score=135.84 Aligned_cols=94 Identities=13% Similarity=0.202 Sum_probs=76.1
Q ss_pred cCHHHHHHHhcCC-CCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCCCc
Q 020170 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (330)
Q Consensus 139 Is~~ea~~ll~~~-~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~sG~ 217 (330)
|+++|+.++++++ ++.++||||+++||+. ||+ +||+|+|+.+ +...... +...++++||+||++|.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~-ghi------pga~~ip~~~-----l~~~~~~-~~~~~~~~iv~~c~~G~ 67 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEA-GHL------PGFRHTPGGQ-----LVQETDH-FAPVRGARIVLADDDGV 67 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHh-CCC------CCcEeCCHHH-----HHHHHHH-hcccCCCeEEEECCCCC
Confidence 6889999999744 3678999999999997 777 4999999853 2222211 12346789999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEccCCCCChHHHhh
Q 020170 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (330)
Q Consensus 218 RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~ 249 (330)
||..++..|+..||+ |+++.||+. +|+.
T Consensus 68 rs~~aa~~L~~~G~~-v~~l~GG~~---~W~~ 95 (95)
T cd01534 68 RADMTASWLAQMGWE-VYVLEGGLA---AALA 95 (95)
T ss_pred hHHHHHHHHHHcCCE-EEEecCcHH---HhcC
Confidence 999999999999999 999999998 9963
No 15
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.73 E-value=8.5e-18 Score=135.22 Aligned_cols=96 Identities=25% Similarity=0.423 Sum_probs=77.9
Q ss_pred HHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCC-cEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCCCchHHHHHH
Q 020170 146 AKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKR-PVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAE 224 (330)
Q Consensus 146 ~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~g-AinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~sG~RS~~AA~ 224 (330)
.++...++.++||||++.||+..|+| + ++|||++++.+ +..... .+++++||+||++|.||..|++
T Consensus 13 ~~~~~~~~~~liDvR~~~e~~~~~i~-------~~~~~ip~~~~~~--~~~~~~----~~~~~~ivv~C~~G~rS~~aa~ 79 (110)
T COG0607 13 ALLLAGEDAVLLDVREPEEYERGHIP-------GAAINIPLSELKA--AENLLE----LPDDDPIVVYCASGVRSAAAAA 79 (110)
T ss_pred HHhhccCCCEEEeccChhHhhhcCCC-------cceeeeecccchh--hhcccc----cCCCCeEEEEeCCCCChHHHHH
Confidence 33333678999999999999974444 7 99999986432 111110 3679999999999999999999
Q ss_pred HHHHcCCCcEEEccCCCCChHHHhhCCCCCCCC
Q 020170 225 LVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (330)
Q Consensus 225 ~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~~~ 257 (330)
.|+++||++++++.||+. +|...++|+...
T Consensus 80 ~L~~~G~~~~~~l~gG~~---~w~~~~~~~~~~ 109 (110)
T COG0607 80 ALKLAGFTNVYNLDGGID---AWKGAGLPLVRG 109 (110)
T ss_pred HHHHcCCccccccCCcHH---HHHhcCCCcccC
Confidence 999999999999999998 999999998754
No 16
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.73 E-value=9.4e-18 Score=140.08 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=85.5
Q ss_pred CcccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhh----hcCCCCCCeEEE
Q 020170 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL----KFKEPENTTLFI 211 (330)
Q Consensus 136 ~g~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~----~~~~~kdk~IVv 211 (330)
...|+++++.+++++++++++||||+++||+. ||+ +||+|||+..+.+ ...++.. ....+++++||+
T Consensus 7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~-~hI------pgai~ip~~~~~~--~~~~~~~~~~~~~~~~~~~~ivv 77 (122)
T cd01526 7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEI-CRL------PEAINIPLSELLS--KAAELKSLQELPLDNDKDSPIYV 77 (122)
T ss_pred ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhc-ccC------CCCeEccHHHHhh--hhhhhhhhhhcccccCCCCcEEE
Confidence 35799999999997547889999999999997 776 4999999874321 1111210 112367899999
Q ss_pred EeCCCchHHHHHHHHHHcCC-CcEEEccCCCCChHHHhhCCCCC
Q 020170 212 LDKFDGNSELVAELVTINGF-KNAYTIKDGAEGPRGWMNSGLPW 254 (330)
Q Consensus 212 ~C~sG~RS~~AA~~L~~~Gf-~~Vy~L~GGi~g~~aW~~aGLPv 254 (330)
||++|.||..+++.|++.|| ++|++++||+. +|+....|.
T Consensus 78 ~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~---~W~~~~~~~ 118 (122)
T cd01526 78 VCRRGNDSQTAVRKLKELGLERFVRDIIGGLK---AWADKVDPT 118 (122)
T ss_pred ECCCCCcHHHHHHHHHHcCCccceeeecchHH---HHHHHhCcc
Confidence 99999999999999999999 79999999998 999876654
No 17
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.71 E-value=1.5e-17 Score=133.90 Aligned_cols=100 Identities=18% Similarity=0.287 Sum_probs=77.3
Q ss_pred cCHHHHHHHhcCC-CCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCC-cchHHHhh--hhcCCCCCCeEEEEeC
Q 020170 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK-PGFLKKLS--LKFKEPENTTLFILDK 214 (330)
Q Consensus 139 Is~~ea~~ll~~~-~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~-~~fl~~L~--~~~~~~kdk~IVv~C~ 214 (330)
||++++.+++.++ ++.++||||++.||+. ||+ +||+|+|+..+.. +.....+. ..+...++++||+||+
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~-ghI------pgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~c~ 73 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRR-GHI------EGSINIPFSSVFLKEGELEQLPTVPRLENYKGKIIVIVSH 73 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhC-Ccc------CCCEeCCHHHhcccccccccccchHHHHhhcCCeEEEEeC
Confidence 6899999999742 3689999999999996 777 4999999864311 01111111 1111235889999999
Q ss_pred CCchHHHHHHHHHHcCCCcEEEccCCCCChHHHh
Q 020170 215 FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (330)
Q Consensus 215 sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~ 248 (330)
+|.||..++..|+..||++||+|.||+. +|+
T Consensus 74 ~g~~s~~~a~~L~~~G~~~v~~l~GG~~---a~~ 104 (105)
T cd01525 74 SHKHAALFAAFLVKCGVPRVCILDGGIN---ALK 104 (105)
T ss_pred CCccHHHHHHHHHHcCCCCEEEEeCcHH---Hhc
Confidence 9999999999999999999999999997 996
No 18
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.71 E-value=3.5e-17 Score=131.68 Aligned_cols=97 Identities=22% Similarity=0.317 Sum_probs=79.4
Q ss_pred ccCHHHHHHHhcCC-CCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCCC
Q 020170 138 VESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFD 216 (330)
Q Consensus 138 ~Is~~ea~~ll~~~-~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~sG 216 (330)
.|+++++.++++.+ +++++||||+++||+. +|+ +||+|+|+.++. ++.+.+.. .++++++|+||++|
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~-~hI------~ga~~ip~~~~~--~~~~~~~~---~~~~~~vv~~c~~g 68 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEI-AFL------PGFLHLPMSEIP--ERSKELDS---DNPDKDIVVLCHHG 68 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhc-CcC------CCCEecCHHHHH--HHHHHhcc---cCCCCeEEEEeCCC
Confidence 37899999999753 3689999999999997 676 499999986432 23333321 14689999999999
Q ss_pred chHHHHHHHHHHcCCCcEEEccCCCCChHHHhh
Q 020170 217 GNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (330)
Q Consensus 217 ~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~ 249 (330)
.||..++..|.+.||++|++++||+. +|+.
T Consensus 69 ~rs~~~~~~l~~~G~~~v~~l~GG~~---~w~~ 98 (101)
T cd01528 69 GRSMQVAQWLLRQGFENVYNLQGGID---AWSL 98 (101)
T ss_pred chHHHHHHHHHHcCCccEEEecCCHH---HHhh
Confidence 99999999999999999999999997 9965
No 19
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.71 E-value=2.4e-17 Score=138.50 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=78.4
Q ss_pred cccCHHHHHHHhcCC-----CCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhh---hcCCCCCCe
Q 020170 137 GVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL---KFKEPENTT 208 (330)
Q Consensus 137 g~Is~~ea~~ll~~~-----~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~---~~~~~kdk~ 208 (330)
..|+++++.++++++ +++++||||+++||+. ||+ +||+|||+.+ .+.+.+.. ....+++++
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~-ghI------~gA~~ip~~~----~l~~~~~~~~~~~~~~~~~~ 70 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNG-GHI------KGAVNLSTKD----ELEEFFLDKPGVASKKKRRV 70 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhC-CcC------CCCEeCCcHH----HHHHHHHHhhcccccCCCCE
Confidence 359999999999743 4789999999999996 777 4999999852 11122211 112478999
Q ss_pred EEEEeC-CCchHHHHHHHHHHc------------CCCcEEEccCCCCChHHHh
Q 020170 209 LFILDK-FDGNSELVAELVTIN------------GFKNAYTIKDGAEGPRGWM 248 (330)
Q Consensus 209 IVv~C~-sG~RS~~AA~~L~~~------------Gf~~Vy~L~GGi~g~~aW~ 248 (330)
||+||+ +|.||..++..|++. ||++||+|+||+. +|.
T Consensus 71 vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~---~f~ 120 (121)
T cd01530 71 LIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK---NFF 120 (121)
T ss_pred EEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH---hhc
Confidence 999997 999999999999985 9999999999997 774
No 20
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.71 E-value=4.3e-17 Score=131.20 Aligned_cols=99 Identities=21% Similarity=0.253 Sum_probs=78.2
Q ss_pred CHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCC------cchHHHhhhhcCCCCCCeEEEEe
Q 020170 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK------PGFLKKLSLKFKEPENTTLFILD 213 (330)
Q Consensus 140 s~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~------~~fl~~L~~~~~~~kdk~IVv~C 213 (330)
|++++.++++.+++.++||||++.||+. ||+ +||+|+|+.++.+ ++|.+.+.. ...+++++||+||
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~-ghI------pgA~~ip~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivv~c 73 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKT-GKI------PGAINIPLSSLPDALALSEEEFEKKYGF-PKPSKDKELIFYC 73 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhc-CcC------CCcEEechHHhhhhhCCCHHHHHHHhcc-cCCCCCCeEEEEC
Confidence 5788888885246799999999999996 777 5999999875321 122222221 1246789999999
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhh
Q 020170 214 KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (330)
Q Consensus 214 ~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~ 249 (330)
++|.||..++..|..+||++|+++.||+. +|.+
T Consensus 74 ~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~---~W~~ 106 (106)
T cd01519 74 KAGVRSKAAAELARSLGYENVGNYPGSWL---DWAA 106 (106)
T ss_pred CCcHHHHHHHHHHHHcCCccceecCCcHH---HHcC
Confidence 99999999999999999999999999997 9963
No 21
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.71 E-value=2.4e-17 Score=131.56 Aligned_cols=101 Identities=23% Similarity=0.264 Sum_probs=79.2
Q ss_pred cCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhh--hhcCCCCCCeEEEEeCCC
Q 020170 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLS--LKFKEPENTTLFILDKFD 216 (330)
Q Consensus 139 Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~--~~~~~~kdk~IVv~C~sG 216 (330)
|+++++.++++ +++.++||||++.||...||+ +||+|+|+..+.. +..... .....+++++||+||.+|
T Consensus 1 is~~el~~~~~-~~~~~iiDvR~~~~~~~~ghI------pga~~ip~~~~~~--~~~~~~~~~~~~~~~~~~ivv~c~~g 71 (103)
T cd01447 1 LSPEDARALLG-SPGVLLVDVRDPRELERTGMI------PGAFHAPRGMLEF--WADPDSPYHKPAFAEDKPFVFYCASG 71 (103)
T ss_pred CCHHHHHHHHh-CCCeEEEECCCHHHHHhcCCC------CCcEEcccchhhh--hcCccccccccCCCCCCeEEEEcCCC
Confidence 57899999997 567899999999999545887 5999999864210 111000 000136789999999999
Q ss_pred chHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCC
Q 020170 217 GNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSG 251 (330)
Q Consensus 217 ~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aG 251 (330)
.||..++..|...||++|+.+.||+. +|..+|
T Consensus 72 ~~s~~~~~~l~~~G~~~v~~l~Gg~~---~w~~~g 103 (103)
T cd01447 72 WRSALAGKTLQDMGLKPVYNIEGGFK---DWKEAG 103 (103)
T ss_pred CcHHHHHHHHHHcChHHhEeecCcHH---HHhhcC
Confidence 99999999999999999999999997 998765
No 22
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.70 E-value=5.6e-17 Score=128.09 Aligned_cols=94 Identities=16% Similarity=0.262 Sum_probs=78.2
Q ss_pred cCHHHHHHHhcCCCCcEEEEeCChhhhhhc-CCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCCCc
Q 020170 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQV-GSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (330)
Q Consensus 139 Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~-Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~sG~ 217 (330)
|+++++.+++++++++++||||++.||+.. ||+ +|++|+|+.+ +.+.+. ..+++++||+||++|.
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi------~ga~~ip~~~-----~~~~~~---~~~~~~~ivv~c~~g~ 67 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHI------PGAIHLDEDS-----LDDWLG---DLDRDRPVVVYCYHGN 67 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCC------CCCeeCCHHH-----HHHHHh---hcCCCCCEEEEeCCCC
Confidence 789999999874467999999999999852 666 4999999863 222222 1367899999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEccCCCCChHHHhh
Q 020170 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (330)
Q Consensus 218 RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~ 249 (330)
||..++..|++.||++|++++||+. +|+.
T Consensus 68 ~s~~a~~~l~~~G~~~v~~l~gG~~---~w~~ 96 (96)
T cd01444 68 SSAQLAQALREAGFTDVRSLAGGFE---AWRR 96 (96)
T ss_pred hHHHHHHHHHHcCCceEEEcCCCHH---HhcC
Confidence 9999999999999999999999997 9963
No 23
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.69 E-value=8.7e-17 Score=131.78 Aligned_cols=100 Identities=13% Similarity=0.166 Sum_probs=82.8
Q ss_pred cccCHHHHHHHhcCC-CCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCC
Q 020170 137 GVESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (330)
Q Consensus 137 g~Is~~ea~~ll~~~-~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~s 215 (330)
..++++++.+++..+ ++.++||||++.||.. ||+ +||+|+|+..+.. ..+. ..+++++||+||++
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~-ghI------pgA~~ip~~~l~~----~~~~---~i~~~~~vvvyc~~ 73 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYAR-GHV------PGAINLPHREICE----NATA---KLDKEKLFVVYCDG 73 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhc-CCC------CCCEeCCHHHhhh----Hhhh---cCCCCCeEEEEECC
Confidence 579999999999743 5689999999999996 777 4999999864221 1121 14678999999998
Q ss_pred Cc--hHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCC
Q 020170 216 DG--NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (330)
Q Consensus 216 G~--RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv 254 (330)
|. +|..++..|++.||+ ++++.||+. +|+.+|+|+
T Consensus 74 g~~~~s~~~a~~l~~~G~~-v~~l~GG~~---~W~~~g~~~ 110 (110)
T cd01521 74 PGCNGATKAALKLAELGFP-VKEMIGGLD---WWKREGYAT 110 (110)
T ss_pred CCCchHHHHHHHHHHcCCe-EEEecCCHH---HHHHCCCCC
Confidence 84 899999999999995 999999998 999999985
No 24
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.68 E-value=1.9e-16 Score=131.17 Aligned_cols=101 Identities=19% Similarity=0.197 Sum_probs=80.9
Q ss_pred cCHHHHHHHhcCCCCcEEEEeCCh-------hhhhhcCCCCCCCCCCCcEEeccCCCCCc------------chHHHhhh
Q 020170 139 ESARNAYAKLGDDASAQLLDIRAP-------VEFRQVGSPDVRGLGKRPVSIVYKGDDKP------------GFLKKLSL 199 (330)
Q Consensus 139 Is~~ea~~ll~~~~~avLIDVR~~-------~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~------------~fl~~L~~ 199 (330)
++++++.++++ +++.++||||++ +||+. ||+ +||+|+|+.++.+. ++.+.+.
T Consensus 2 i~~~~l~~~l~-~~~~~ivDvR~~~~~~~~~~~~~~-ghI------~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~- 72 (122)
T cd01448 2 VSPDWLAEHLD-DPDVRILDARWYLPDRDGRKEYLE-GHI------PGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLG- 72 (122)
T ss_pred cCHHHHHHHhC-CCCeEEEEeecCCCCCchhhHHhh-CCC------CCCEEcChhhccccCCCCCCCCCCHHHHHHHHH-
Confidence 68999999997 567899999999 99986 777 49999998653210 1122221
Q ss_pred hcCCCCCCeEEEEeCC-CchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCC
Q 020170 200 KFKEPENTTLFILDKF-DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSG 251 (330)
Q Consensus 200 ~~~~~kdk~IVv~C~s-G~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aG 251 (330)
....+++++||+||++ |.+|..++..|+.+||++||++.||+. +|+++|
T Consensus 73 ~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~---~W~~~g 122 (122)
T cd01448 73 SLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ---AWKAEG 122 (122)
T ss_pred HcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH---HHHhCc
Confidence 1235689999999999 589999999999999999999999997 998865
No 25
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.68 E-value=1.6e-16 Score=134.04 Aligned_cols=98 Identities=20% Similarity=0.282 Sum_probs=76.1
Q ss_pred cCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcch------------------------H
Q 020170 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGF------------------------L 194 (330)
Q Consensus 139 Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~f------------------------l 194 (330)
||++++.++++ ++.++||||+++||.. ||+ +||+|||+.......+ .
T Consensus 1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~-ghI------pgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (128)
T cd01520 1 ITAEDLLALRK--ADGPLIDVRSPKEFFE-GHL------PGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKL 71 (128)
T ss_pred CCHHHHHHHHh--cCCEEEECCCHHHhcc-CcC------CCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhH
Confidence 68999999986 4789999999999996 777 4999999964211000 0
Q ss_pred HHhhhh---cCCCCCCeEEEEeC-CCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhh
Q 020170 195 KKLSLK---FKEPENTTLFILDK-FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (330)
Q Consensus 195 ~~L~~~---~~~~kdk~IVv~C~-sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~ 249 (330)
+++..+ ...+++++||+||+ +|.||..++..|+.+|| +|++|.||+. +|+.
T Consensus 72 ~~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~---aw~~ 126 (128)
T cd01520 72 KRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYK---AYRK 126 (128)
T ss_pred HHHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHH---HHHh
Confidence 111111 13578999999997 68999999999999999 6999999997 9975
No 26
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.68 E-value=1.8e-16 Score=123.10 Aligned_cols=92 Identities=26% Similarity=0.401 Sum_probs=73.8
Q ss_pred CCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcc-------hHHHhhhhcCCCCCCeEEEEeCCCchHHHHH
Q 020170 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPG-------FLKKLSLKFKEPENTTLFILDKFDGNSELVA 223 (330)
Q Consensus 151 ~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~-------fl~~L~~~~~~~kdk~IVv~C~sG~RS~~AA 223 (330)
+++.++||||++.||.. ||+ +||+|+|+....... +.+... ....+++++||+||.+|.++..++
T Consensus 2 ~~~~~ivDvR~~~e~~~-~hi------~ga~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iv~~c~~g~~a~~~~ 73 (100)
T smart00450 2 DEKVVLLDVRSPEEYEG-GHI------PGAVNIPLSELLDRRGELDILEFEELLK-RLGLDKDKPVVVYCRSGNRSAKAA 73 (100)
T ss_pred CCCEEEEECCCHHHhcc-CCC------CCceeCCHHHhccCCCCcCHHHHHHHHH-HcCCCCCCeEEEEeCCCcHHHHHH
Confidence 46799999999999996 777 499999986532211 111111 123567899999999999999999
Q ss_pred HHHHHcCCCcEEEccCCCCChHHHhhCCCC
Q 020170 224 ELVTINGFKNAYTIKDGAEGPRGWMNSGLP 253 (330)
Q Consensus 224 ~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLP 253 (330)
..|++.||++||+|.||+. +|++.|.|
T Consensus 74 ~~l~~~G~~~v~~l~GG~~---~w~~~~~~ 100 (100)
T smart00450 74 WLLRELGFKNVYLLDGGYK---EWSAAGPP 100 (100)
T ss_pred HHHHHcCCCceEEecCCHH---HHHhcCCC
Confidence 9999999999999999998 99998875
No 27
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.66 E-value=1.4e-16 Score=130.69 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=78.7
Q ss_pred cCHHHHHHHhcCCCCcEEEEeCChhhhhhc----------CCCCCCCCCCCcEEeccCCCCC-------cchHHHhhhhc
Q 020170 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQV----------GSPDVRGLGKRPVSIVYKGDDK-------PGFLKKLSLKF 201 (330)
Q Consensus 139 Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~----------Ghp~l~~~~~gAinIPl~~~~~-------~~fl~~L~~~~ 201 (330)
++++++.++++ +++.++||||++.||... ||| +||+|+|+..... +...++.....
T Consensus 1 ~s~~~l~~~l~-~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghI------pgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 73 (118)
T cd01449 1 VTAEEVLANLD-SGDVQLVDARSPERFRGEVPEPRPGLRSGHI------PGAVNIPWTSLLDEDGTFKSPEELRALFAAL 73 (118)
T ss_pred CCHHHHHHhcC-CCCcEEEeCCCHHHcCCcCCCCCCCCcCCcC------CCCcccChHHhcCCCCCcCCHHHHHHHHHHc
Confidence 57899999986 567999999999999741 666 5999999864221 11122222222
Q ss_pred CCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhh
Q 020170 202 KEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (330)
Q Consensus 202 ~~~kdk~IVv~C~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~ 249 (330)
..+++++||+||++|.||..++..|+.+||++++++.||+. +|+.
T Consensus 74 ~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~---~W~~ 118 (118)
T cd01449 74 GITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS---EWGS 118 (118)
T ss_pred CCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH---HhcC
Confidence 35678999999999999999999999999999999999997 9963
No 28
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.66 E-value=2.4e-16 Score=129.64 Aligned_cols=101 Identities=14% Similarity=0.127 Sum_probs=78.2
Q ss_pred cccCHHHHHHHhcCC-CCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeC-
Q 020170 137 GVESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDK- 214 (330)
Q Consensus 137 g~Is~~ea~~ll~~~-~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~- 214 (330)
..|+++++.++++.+ ++.++||||++ ||.. ||| +||+|+|+..+.. ...++......+++++||+||.
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~-~hi------~gA~~ip~~~l~~--~~~~~~~~~~~~~~~~iv~yC~~ 71 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAG-GHI------KGSWHYPSTRFKA--QLNQLVQLLSGSKKDTVVFHCAL 71 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCC-CcC------CCCEecCHHHHhh--CHHHHHHHHhcCCCCeEEEEeec
Confidence 358999999999743 56789999999 9986 777 4999999875321 2233322111256789999998
Q ss_pred CCchHHHHHHHHHH--------cCCCcEEEccCCCCChHHHhhC
Q 020170 215 FDGNSELVAELVTI--------NGFKNAYTIKDGAEGPRGWMNS 250 (330)
Q Consensus 215 sG~RS~~AA~~L~~--------~Gf~~Vy~L~GGi~g~~aW~~a 250 (330)
+|.||..+++.|.+ .||++||++.||+. +|++.
T Consensus 72 ~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~---~w~~~ 112 (113)
T cd01531 72 SQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFN---AWESS 112 (113)
T ss_pred CCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHH---HHHhh
Confidence 77899999998865 59999999999998 99864
No 29
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.66 E-value=4e-16 Score=123.19 Aligned_cols=89 Identities=19% Similarity=0.330 Sum_probs=74.5
Q ss_pred cCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCCCch
Q 020170 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGN 218 (330)
Q Consensus 139 Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~sG~R 218 (330)
++|+++.++++ ++.++||+|+++||.. ||+ +||+|+|+.+ +.+.+.. .+++++||+||++|.+
T Consensus 1 ~~~~e~~~~~~--~~~~iiD~R~~~~~~~-~hi------pgA~~ip~~~-----~~~~~~~---~~~~~~vvl~c~~g~~ 63 (90)
T cd01524 1 VQWHELDNYRA--DGVTLIDVRTPQEFEK-GHI------KGAINIPLDE-----LRDRLNE---LPKDKEIIVYCAVGLR 63 (90)
T ss_pred CCHHHHHHHhc--CCCEEEECCCHHHHhc-CCC------CCCEeCCHHH-----HHHHHHh---cCCCCcEEEEcCCChh
Confidence 46889999884 5789999999999996 777 4999999753 3233321 3567899999999999
Q ss_pred HHHHHHHHHHcCCCcEEEccCCCCChHHHh
Q 020170 219 SELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (330)
Q Consensus 219 S~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~ 248 (330)
+..+++.|++.|| ++++++||+. +|+
T Consensus 64 a~~~a~~L~~~G~-~v~~l~GG~~---~w~ 89 (90)
T cd01524 64 GYIAARILTQNGF-KVKNLDGGYK---TYS 89 (90)
T ss_pred HHHHHHHHHHCCC-CEEEecCCHH---Hhc
Confidence 9999999999999 9999999998 996
No 30
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.65 E-value=4e-16 Score=135.35 Aligned_cols=100 Identities=15% Similarity=0.231 Sum_probs=81.7
Q ss_pred HHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCCCchHHHHH
Q 020170 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVA 223 (330)
Q Consensus 144 a~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~sG~RS~~AA 223 (330)
+.+++.+++++++||||++.||+. ||| +||+++|.. .+.+.+.. .+++++||+||.+|.+|..++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~-gHI------pgAi~~~~~-----~l~~~l~~---l~~~~~vVv~c~~g~~a~~aa 66 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVK-RHI------PGAWWVLRA-----QLAQALEK---LPAAERYVLTCGSSLLARFAA 66 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHc-CCC------CCceeCCHH-----HHHHHHHh---cCCCCCEEEEeCCChHHHHHH
Confidence 345665556789999999999996 777 499999854 23333432 246789999999999999999
Q ss_pred HHHHHcCCCcEEEccCCCCChHHHhhCCCCCCCCCCCc
Q 020170 224 ELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKAL 261 (330)
Q Consensus 224 ~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~~~kk~~ 261 (330)
..|+..||++|++|+||+. +|+.+|+|+..+++..
T Consensus 67 ~~L~~~G~~~v~~L~GG~~---aW~~~g~pl~~~~~~~ 101 (145)
T cd01535 67 ADLAALTVKPVFVLEGGTA---AWIAAGLPVESGETRL 101 (145)
T ss_pred HHHHHcCCcCeEEecCcHH---HHHHCCCCcccCCCCC
Confidence 9999999999999999998 9999999999875543
No 31
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.65 E-value=4.2e-16 Score=153.79 Aligned_cols=105 Identities=18% Similarity=0.259 Sum_probs=88.0
Q ss_pred CcccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCC
Q 020170 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (330)
Q Consensus 136 ~g~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~s 215 (330)
+..|+++++.++++ ++.++||||+++||+. ||+ +||+|+|+.. +.+.+.. ...+++++||+||++
T Consensus 2 v~~is~~el~~~l~--~~~~ivDvR~~~e~~~-ghI------pgAi~ip~~~-----l~~~~~~-~~~~~~~~IvvyC~~ 66 (376)
T PRK08762 2 IREISPAEARARAA--QGAVLIDVREAHERAS-GQA------EGALRIPRGF-----LELRIET-HLPDRDREIVLICAS 66 (376)
T ss_pred CceeCHHHHHHHHh--CCCEEEECCCHHHHhC-CcC------CCCEECCHHH-----HHHHHhh-hcCCCCCeEEEEcCC
Confidence 35799999999996 3589999999999996 777 5999999853 2222222 113678999999999
Q ss_pred CchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCCCCC
Q 020170 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (330)
Q Consensus 216 G~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~~~k 258 (330)
|.||..|++.|+++||++|++++||+. +|++.|+|+..+.
T Consensus 67 G~rs~~aa~~L~~~G~~~v~~l~GG~~---~W~~~g~p~~~~~ 106 (376)
T PRK08762 67 GTRSAHAAATLRELGYTRVASVAGGFS---AWKDAGLPLERPR 106 (376)
T ss_pred CcHHHHHHHHHHHcCCCceEeecCcHH---HHHhcCCcccccc
Confidence 999999999999999999999999998 9999999998764
No 32
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.65 E-value=3.6e-16 Score=124.68 Aligned_cols=86 Identities=20% Similarity=0.168 Sum_probs=69.0
Q ss_pred CCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCC-cchHHHhhhhcCCCCCCeEEEEeCCCchHHHHHHHHHHc
Q 020170 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK-PGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTIN 229 (330)
Q Consensus 151 ~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~-~~fl~~L~~~~~~~kdk~IVv~C~sG~RS~~AA~~L~~~ 229 (330)
+++.++||||+++||+. ||+ +||+|+|+.++.. ....+.+. ..+++++||+||++|.+|..++..|++.
T Consensus 10 ~~~~~iiDvR~~~~~~~-~hI------pgA~~ip~~~~~~~~~~~~~~~---~~~~~~~ivv~c~~g~~s~~~~~~l~~~ 79 (96)
T cd01529 10 EPGTALLDVRAEDEYAA-GHL------PGKRSIPGAALVLRSQELQALE---APGRATRYVLTCDGSLLARFAAQELLAL 79 (96)
T ss_pred CCCeEEEeCCCHHHHcC-CCC------CCcEeCCHHHhcCCHHHHHHhh---cCCCCCCEEEEeCChHHHHHHHHHHHHc
Confidence 46789999999999997 777 4999999864321 11111121 1367899999999999999999999999
Q ss_pred CCCcEEEccCCCCChHHHhh
Q 020170 230 GFKNAYTIKDGAEGPRGWMN 249 (330)
Q Consensus 230 Gf~~Vy~L~GGi~g~~aW~~ 249 (330)
||++|+++.||+. +|++
T Consensus 80 G~~~v~~l~GG~~---~W~~ 96 (96)
T cd01529 80 GGKPVALLDGGTS---AWVA 96 (96)
T ss_pred CCCCEEEeCCCHH---HhcC
Confidence 9999999999997 9963
No 33
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.65 E-value=3.8e-16 Score=124.26 Aligned_cols=86 Identities=16% Similarity=0.315 Sum_probs=68.1
Q ss_pred HhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCCCch--HHHHHH
Q 020170 147 KLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGN--SELVAE 224 (330)
Q Consensus 147 ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~sG~R--S~~AA~ 224 (330)
+++ ++++++||||+++||.. +|+ ++++|+|+..+.. .... .+ .++++|||+||++|.| |..|+.
T Consensus 5 ~~~-~~~~~liDvR~~~e~~~-~hi------~ga~~ip~~~~~~----~~~~-~~-~~~~~~ivl~c~~G~~~~s~~aa~ 70 (92)
T cd01532 5 LLA-REEIALIDVREEDPFAQ-SHP------LWAANLPLSRLEL----DAWV-RI-PRRDTPIVVYGEGGGEDLAPRAAR 70 (92)
T ss_pred hhc-CCCeEEEECCCHHHHhh-CCc------ccCeeCCHHHHHh----hhHh-hC-CCCCCeEEEEeCCCCchHHHHHHH
Confidence 344 67899999999999997 777 4999999753210 1111 11 2468999999999988 689999
Q ss_pred HHHHcCCCcEEEccCCCCChHHHhh
Q 020170 225 LVTINGFKNAYTIKDGAEGPRGWMN 249 (330)
Q Consensus 225 ~L~~~Gf~~Vy~L~GGi~g~~aW~~ 249 (330)
.|++.||++|++++||+. +|++
T Consensus 71 ~L~~~G~~~v~~l~GG~~---~W~~ 92 (92)
T cd01532 71 RLSELGYTDVALLEGGLQ---GWRA 92 (92)
T ss_pred HHHHcCccCEEEccCCHH---HHcC
Confidence 999999999999999997 9974
No 34
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.64 E-value=7e-16 Score=123.64 Aligned_cols=99 Identities=24% Similarity=0.320 Sum_probs=77.0
Q ss_pred CHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCC---CCcchHHHh----hhh-cCCCCCCeEEE
Q 020170 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGD---DKPGFLKKL----SLK-FKEPENTTLFI 211 (330)
Q Consensus 140 s~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~---~~~~fl~~L----~~~-~~~~kdk~IVv 211 (330)
||+|+.+++ .+++.++||+|++.||.. ||+ +||+|||+... ....+...+ ... ...+++++||+
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~-~hI------~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 72 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYER-GHI------PGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVF 72 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHH-SBE------TTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEE
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHc-CCC------CCCcccccccccccccccccccccccccccccccccccccee
Confidence 689999999 478999999999999997 777 49999999421 011111111 111 12477889999
Q ss_pred EeCCCchHHHHHHH-----HHHcCCCcEEEccCCCCChHHHhh
Q 020170 212 LDKFDGNSELVAEL-----VTINGFKNAYTIKDGAEGPRGWMN 249 (330)
Q Consensus 212 ~C~sG~RS~~AA~~-----L~~~Gf~~Vy~L~GGi~g~~aW~~ 249 (330)
||.+|.++..++.. |.++||++|++++||+. +|++
T Consensus 73 yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~---~w~~ 112 (113)
T PF00581_consen 73 YCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE---AWKA 112 (113)
T ss_dssp EESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH---HHHH
T ss_pred eeecccccchhHHHHHHHHHHHcCCCCEEEecChHH---HHhc
Confidence 99999999998888 89999999999999998 9986
No 35
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.62 E-value=9.1e-16 Score=126.31 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=74.3
Q ss_pred cccCHHHHHHHhcCC-----CCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEE
Q 020170 137 GVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFI 211 (330)
Q Consensus 137 g~Is~~ea~~ll~~~-----~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv 211 (330)
+.|+++++.++++++ ++.++||||++ ||+. ||+ ++|+|+|+..+.+ ...++...+...++++||+
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~-ghi------pgAi~ip~~~~~~--~~~~~~~~~~~~~~~~iv~ 71 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEG-GHI------KGSINLPAQSCYQ--TLPQVYALFSLAGVKLAIF 71 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCC-Ccc------cCceecchhHHHH--HHHHHHHHhhhcCCCEEEE
Confidence 358999999999754 46899999999 9996 777 4999999875321 1222222122345689999
Q ss_pred EeCC-CchHHHHHHHHHH----cCC--CcEEEccCCCCChHHHh
Q 020170 212 LDKF-DGNSELVAELVTI----NGF--KNAYTIKDGAEGPRGWM 248 (330)
Q Consensus 212 ~C~s-G~RS~~AA~~L~~----~Gf--~~Vy~L~GGi~g~~aW~ 248 (330)
||.+ |.||..+++.+.+ .|| .++|+|+||+. +|+
T Consensus 72 ~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~---~w~ 112 (113)
T cd01443 72 YCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIK---AWY 112 (113)
T ss_pred ECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhh---hhc
Confidence 9997 5899888877654 475 78999999998 995
No 36
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.59 E-value=2e-15 Score=116.10 Aligned_cols=88 Identities=22% Similarity=0.353 Sum_probs=71.6
Q ss_pred HHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCCCchHHHHH
Q 020170 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVA 223 (330)
Q Consensus 144 a~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~sG~RS~~AA 223 (330)
+.++++ +++..+||+|++.||+. +|+ ++++|+|+..... .. .....+++++||+||..|.++..++
T Consensus 2 ~~~~~~-~~~~~iiD~R~~~~~~~-~~i------~ga~~~~~~~~~~-----~~-~~~~~~~~~~vv~~c~~~~~a~~~~ 67 (89)
T cd00158 2 LKELLD-DEDAVLLDVREPEEYAA-GHI------PGAINIPLSELEE-----RA-ALLELDKDKPIVVYCRSGNRSARAA 67 (89)
T ss_pred hHHHhc-CCCeEEEECCCHHHHhc-ccc------CCCEecchHHHhh-----HH-HhhccCCCCeEEEEeCCCchHHHHH
Confidence 455665 67899999999999996 777 4999999864221 10 0112478899999999999999999
Q ss_pred HHHHHcCCCcEEEccCCCCChHHHh
Q 020170 224 ELVTINGFKNAYTIKDGAEGPRGWM 248 (330)
Q Consensus 224 ~~L~~~Gf~~Vy~L~GGi~g~~aW~ 248 (330)
..|++.||.++++++||+. +|+
T Consensus 68 ~~l~~~G~~~v~~l~gG~~---~w~ 89 (89)
T cd00158 68 KLLRKAGGTNVYNLEGGML---AWK 89 (89)
T ss_pred HHHHHhCcccEEEecCChh---hcC
Confidence 9999999999999999998 884
No 37
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.58 E-value=5.7e-15 Score=146.83 Aligned_cols=103 Identities=19% Similarity=0.203 Sum_probs=85.5
Q ss_pred CcccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCC
Q 020170 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (330)
Q Consensus 136 ~g~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~s 215 (330)
...|+++|+.++++++++.++||||+++||+. ||+ +||+|+|+.++... ..+.. .+++++||+||++
T Consensus 286 ~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~-ghI------pGAinip~~~l~~~---~~~~~---l~~d~~iVvyC~~ 352 (392)
T PRK07878 286 GSTITPRELKEWLDSGKKIALIDVREPVEWDI-VHI------PGAQLIPKSEILSG---EALAK---LPQDRTIVLYCKT 352 (392)
T ss_pred CCccCHHHHHHHHhCCCCeEEEECCCHHHHhc-CCC------CCCEEcChHHhcch---hHHhh---CCCCCcEEEEcCC
Confidence 35699999999997555689999999999996 777 49999998753221 12221 3678999999999
Q ss_pred CchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCC
Q 020170 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (330)
Q Consensus 216 G~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv 254 (330)
|.||..++..|++.||++||+++||+. +|++...|-
T Consensus 353 G~rS~~aa~~L~~~G~~~V~~L~GG~~---~W~~~~~~~ 388 (392)
T PRK07878 353 GVRSAEALAALKKAGFSDAVHLQGGVV---AWAKQVDPS 388 (392)
T ss_pred ChHHHHHHHHHHHcCCCcEEEecCcHH---HHHHhcCCC
Confidence 999999999999999999999999998 999887663
No 38
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.55 E-value=1.4e-14 Score=118.65 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=66.1
Q ss_pred CCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCCCchHHHHHHHHHHcCC
Q 020170 152 ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGF 231 (330)
Q Consensus 152 ~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~sG~RS~~AA~~L~~~Gf 231 (330)
.+..+||||+++||.. ||+ +||+|||+.+ +.+.+.. +..+++++||+||++|.||..++..|.++||
T Consensus 17 ~~~~lIDvR~~~ef~~-ghI------pgAinip~~~-----l~~~l~~-~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~ 83 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQ-EHI------QGAINIPLKE-----IKEHIAT-AVPDKNDTVKLYCNAGRQSGMAKDILLDMGY 83 (101)
T ss_pred cCCEEEECCCHHHHhc-CCC------CCCEECCHHH-----HHHHHHH-hCCCCCCeEEEEeCCCHHHHHHHHHHHHcCC
Confidence 4678999999999997 777 4999999863 2223322 1246788999999999999999999999999
Q ss_pred CcEEEccCCCCChHHHhh
Q 020170 232 KNAYTIKDGAEGPRGWMN 249 (330)
Q Consensus 232 ~~Vy~L~GGi~g~~aW~~ 249 (330)
++++++ ||+. +|.-
T Consensus 84 ~~v~~~-GG~~---~~~~ 97 (101)
T TIGR02981 84 THAENA-GGIK---DIAM 97 (101)
T ss_pred CeEEec-CCHH---Hhhh
Confidence 999986 9997 8864
No 39
>PRK07411 hypothetical protein; Validated
Probab=99.55 E-value=1.1e-14 Score=144.89 Aligned_cols=106 Identities=18% Similarity=0.200 Sum_probs=85.0
Q ss_pred CcccCHHHHHHHhcCCC-CcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeC
Q 020170 136 WGVESARNAYAKLGDDA-SAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDK 214 (330)
Q Consensus 136 ~g~Is~~ea~~ll~~~~-~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~ 214 (330)
...|+++|+.+++++++ +.++||||+++||+. ||+ +||+|||+.++.+....+++.+ .+++++||+||+
T Consensus 281 ~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~-ghI------pGAiniP~~~l~~~~~~~~l~~---l~~d~~IVvyC~ 350 (390)
T PRK07411 281 IPEMTVTELKALLDSGADDFVLIDVRNPNEYEI-ARI------PGSVLVPLPDIENGPGVEKVKE---LLNGHRLIAHCK 350 (390)
T ss_pred cCccCHHHHHHHHhCCCCCeEEEECCCHHHhcc-CcC------CCCEEccHHHhhcccchHHHhh---cCCCCeEEEECC
Confidence 46799999999997443 689999999999996 777 4999999875432222234432 357899999999
Q ss_pred CCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCC
Q 020170 215 FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWI 255 (330)
Q Consensus 215 sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~ 255 (330)
+|.||..++..|+++||++ +++.||+. +|.+...|..
T Consensus 351 ~G~RS~~aa~~L~~~G~~~-~~l~GG~~---~W~~~~~p~~ 387 (390)
T PRK07411 351 MGGRSAKALGILKEAGIEG-TNVKGGIT---AWSREVDPSV 387 (390)
T ss_pred CCHHHHHHHHHHHHcCCCe-EEecchHH---HHHHhcCCCC
Confidence 9999999999999999985 68999998 9998876653
No 40
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.53 E-value=2.2e-14 Score=118.29 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=65.8
Q ss_pred CCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCCCchHHHHHHHHHHcCC
Q 020170 152 ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGF 231 (330)
Q Consensus 152 ~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~sG~RS~~AA~~L~~~Gf 231 (330)
.+-++||||+++||+. ||+ +||+|+|+.+ +.+.+.. +..+++++||+||++|.||..++..|.+.||
T Consensus 19 ~~~~lIDvR~~~ef~~-ghI------pGAiniP~~~-----l~~~l~~-l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~ 85 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQ-EHV------QGAINIPLKE-----VKERIAT-AVPDKNDTVKLYCNAGRQSGQAKEILSEMGY 85 (104)
T ss_pred CCCEEEECCCHHHHhc-CCC------CccEECCHHH-----HHHHHHh-cCCCCCCeEEEEeCCChHHHHHHHHHHHcCC
Confidence 4567999999999997 776 4999999863 3333332 2245678999999999999999999999999
Q ss_pred CcEEEccCCCCChHHHhh
Q 020170 232 KNAYTIKDGAEGPRGWMN 249 (330)
Q Consensus 232 ~~Vy~L~GGi~g~~aW~~ 249 (330)
+++++ .||+. +|.-
T Consensus 86 ~~v~~-~GG~~---~~~~ 99 (104)
T PRK10287 86 THAEN-AGGLK---DIAM 99 (104)
T ss_pred CeEEe-cCCHH---HHhh
Confidence 99988 69998 8864
No 41
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.53 E-value=1.6e-14 Score=142.86 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=74.2
Q ss_pred ccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCc-chHHHhhhhcCCCCCCeEEEEeCCC
Q 020170 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKP-GFLKKLSLKFKEPENTTLFILDKFD 216 (330)
Q Consensus 138 ~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~-~fl~~L~~~~~~~kdk~IVv~C~sG 216 (330)
.++++|+.++++ ++++++||||+++||+. ||++- ..+++|||+.++.+. .+.+++.. .+++ |||+||++|
T Consensus 272 ~~~~~el~~~l~-~~~~~lIDVR~~~E~~~-ghI~~---~~gAinIPl~~l~~~~~~~~~l~~---~~~~-~Ivv~C~sG 342 (370)
T PRK05600 272 RTDTTSLIDATL-NGSATLLDVREPHEVLL-KDLPE---GGASLKLPLSAITDDADILHALSP---IDGD-NVVVYCASG 342 (370)
T ss_pred ccCHHHHHHHHh-cCCeEEEECCCHHHhhh-ccCCC---CCccEeCcHHHhhcchhhhhhccc---cCCC-cEEEECCCC
Confidence 478999999997 45689999999999997 77620 016999998754321 12222321 2334 999999999
Q ss_pred chHHHHHHHHHHcCCCc-EEEccCCCC
Q 020170 217 GNSELVAELVTINGFKN-AYTIKDGAE 242 (330)
Q Consensus 217 ~RS~~AA~~L~~~Gf~~-Vy~L~GGi~ 242 (330)
.||..|++.|+++||++ ||+++||+.
T Consensus 343 ~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 343 IRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred hhHHHHHHHHHHcCCCCceEEeccccC
Confidence 99999999999999996 999999985
No 42
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.48 E-value=1.5e-13 Score=130.42 Aligned_cols=109 Identities=16% Similarity=0.182 Sum_probs=85.1
Q ss_pred ccCHHHHHHHhcCCCCcEEEEeCC----------hhhhhhcCCCCCCCCCCCcEEeccCCCCC-----------cchHHH
Q 020170 138 VESARNAYAKLGDDASAQLLDIRA----------PVEFRQVGSPDVRGLGKRPVSIVYKGDDK-----------PGFLKK 196 (330)
Q Consensus 138 ~Is~~ea~~ll~~~~~avLIDVR~----------~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~-----------~~fl~~ 196 (330)
.++++++.+.++ +++.++||+|+ +.||+. ||| +||+|+|+....+ ++-+++
T Consensus 6 lvs~~~l~~~l~-~~~~~iiD~R~~~~~~~~~~~~~~y~~-GHI------pGA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (281)
T PRK11493 6 FVAADWLAEHID-DPEIQIIDARMAPPGQEDRDVAAEYRA-GHI------PGAVFFDIEALSDHTSPLPHMMPRPETFAV 77 (281)
T ss_pred ccCHHHHHHhcC-CCCeEEEEeeCCCCCccccchHHHHHh-CcC------CCCEEcCHHHhcCCCCCCCCCCCCHHHHHH
Confidence 489999999997 67899999997 788986 777 5999999753211 111112
Q ss_pred hhhhcCCCCCCeEEEEeCCCch-HHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCCCC
Q 020170 197 LSLKFKEPENTTLFILDKFDGN-SELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (330)
Q Consensus 197 L~~~~~~~kdk~IVv~C~sG~R-S~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~~~ 257 (330)
+-..+..+++++||+||.+|.+ +..++..|...||++|+++.||+. +|+++|+|+...
T Consensus 78 ~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~---~W~~~g~p~~~~ 136 (281)
T PRK11493 78 AMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLA---GWQRDDLLLEEG 136 (281)
T ss_pred HHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHH---HHHHcCCCccCC
Confidence 2222346789999999998775 556788899999999999999997 999999998765
No 43
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.47 E-value=7.9e-14 Score=132.37 Aligned_cols=110 Identities=14% Similarity=0.154 Sum_probs=84.0
Q ss_pred cCHHHHHHHhcCCCCcEEEEeCChhhhhh----------cCCCCCCCCCCCcEEeccCCCCCc-ch--HHHhhhhc---C
Q 020170 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQ----------VGSPDVRGLGKRPVSIVYKGDDKP-GF--LKKLSLKF---K 202 (330)
Q Consensus 139 Is~~ea~~ll~~~~~avLIDVR~~~Ef~~----------~Ghp~l~~~~~gAinIPl~~~~~~-~f--l~~L~~~~---~ 202 (330)
.+.+++...++ ++++++||+|+++||.. .||| +||+|+|+.++.++ .+ .+++++.+ .
T Consensus 155 ~~~~~v~~~~~-~~~~~llD~R~~~e~~G~~~~~~~~~~~GhI------pgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g 227 (281)
T PRK11493 155 VRLTDVLLASH-EKTAQIVDARPAARFNAEVDEPRPGLRRGHI------PGALNVPWTELVREGELKTTDELDAIFFGRG 227 (281)
T ss_pred ecHHHHHHhhc-CCCcEEEeCCCccceeeeccCCCCCcccccC------CCcCCCCHHHhcCCCCcCCHHHHHHHHHhcC
Confidence 34455555554 56789999999999951 3666 69999998753321 11 23443332 3
Q ss_pred CCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhh-CCCCCCCCC
Q 020170 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN-SGLPWIPPK 258 (330)
Q Consensus 203 ~~kdk~IVv~C~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~-aGLPv~~~k 258 (330)
.+++++||+||++|.||..++..|..+||++|+++.||+. .|.. .++|++.+|
T Consensus 228 ~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~---eW~~~~~~P~~~~~ 281 (281)
T PRK11493 228 VSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWS---EWGARADLPVEPAK 281 (281)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHH---HHccCCCCCcCCCC
Confidence 4678999999999999999999999999999999999997 9998 799998653
No 44
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.46 E-value=2.2e-13 Score=142.58 Aligned_cols=108 Identities=13% Similarity=0.213 Sum_probs=87.7
Q ss_pred ccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCC-----------CCc-chHHHhhhhcCCCC
Q 020170 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGD-----------DKP-GFLKKLSLKFKEPE 205 (330)
Q Consensus 138 ~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~-----------~~~-~fl~~L~~~~~~~k 205 (330)
.||++++.++++ ++++++||+|+++||.. ||| +||+|+|++.. .++ ++.+.+. .+..++
T Consensus 10 lIs~~eL~~~l~-~~~vvIIDvR~~~eY~~-GHI------PGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~-~lGI~~ 80 (610)
T PRK09629 10 VIEPNDLLERLD-APELILVDLTSSARYEA-GHI------RGARFVDPKRTQLGKPPAPGLLPDTADLEQLFG-ELGHNP 80 (610)
T ss_pred eecHHHHHHHhc-CCCEEEEECCChHHHHh-CCC------CCcEEcChhHhhccCCCCCCCCCCHHHHHHHHH-HcCCCC
Confidence 499999999997 67899999999999996 777 49999997521 111 2223332 335678
Q ss_pred CCeEEEEeCCCc-hHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCCCC
Q 020170 206 NTTLFILDKFDG-NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (330)
Q Consensus 206 dk~IVv~C~sG~-RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~~~ 257 (330)
|++||+||++|. ++..++-.|+.+||++|++|.||+. +|+.+|+|+...
T Consensus 81 d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~---aW~~ag~p~~~~ 130 (610)
T PRK09629 81 DAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVL---AWEAQALPLSTD 130 (610)
T ss_pred CCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHH---HHHHcCCccccC
Confidence 999999999884 7889999999999999999999998 999999998653
No 45
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.41 E-value=3.2e-13 Score=132.81 Aligned_cols=94 Identities=17% Similarity=0.239 Sum_probs=74.3
Q ss_pred ccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCCCc
Q 020170 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (330)
Q Consensus 138 ~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~sG~ 217 (330)
.++++++.++. ++.++||||+++||+. ||+ +||+|+|+.++.. .... ...+++++||+||++|.
T Consensus 262 ~i~~~~~~~~~---~~~~IIDVR~~~ef~~-ghI------pgAinip~~~l~~-----~~~~-~~~~~~~~IvvyC~~G~ 325 (355)
T PRK05597 262 VLDVPRVSALP---DGVTLIDVREPSEFAA-YSI------PGAHNVPLSAIRE-----GANP-PSVSAGDEVVVYCAAGV 325 (355)
T ss_pred ccCHHHHHhcc---CCCEEEECCCHHHHcc-CcC------CCCEEeCHHHhhh-----cccc-ccCCCCCeEEEEcCCCH
Confidence 46677766443 4689999999999997 777 4999999864221 1110 01367899999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEccCCCCChHHHhhC
Q 020170 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMNS 250 (330)
Q Consensus 218 RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~a 250 (330)
||..|+..|++.||++|++++||+. +|+++
T Consensus 326 rS~~Aa~~L~~~G~~nV~~L~GGi~---~W~~~ 355 (355)
T PRK05597 326 RSAQAVAILERAGYTGMSSLDGGIE---GWLDS 355 (355)
T ss_pred HHHHHHHHHHHcCCCCEEEecCcHH---HHhhC
Confidence 9999999999999999999999997 99753
No 46
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.40 E-value=9.6e-13 Score=127.59 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=84.5
Q ss_pred cccCHHHHHHHhcCCCCcEEEEeC--------C-hhhhhhcCCCCCCCCCCCcEEeccCCCCC------------cchHH
Q 020170 137 GVESARNAYAKLGDDASAQLLDIR--------A-PVEFRQVGSPDVRGLGKRPVSIVYKGDDK------------PGFLK 195 (330)
Q Consensus 137 g~Is~~ea~~ll~~~~~avLIDVR--------~-~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~------------~~fl~ 195 (330)
..|+++++.++++ +++.++||+| + .+||.. ||| +||+|+|+.++.+ ..|.+
T Consensus 22 ~lvs~~~L~~~l~-~~~~~IiDvr~~~~~~~r~~~~~y~~-gHI------PgAi~i~~~~~~~~~~~~~~~lp~~~~~~~ 93 (320)
T PLN02723 22 PVVSVDWLHANLR-EPDVKVLDASWYMPDEQRNPIQEYQV-AHI------PGALFFDLDGISDRTTDLPHMLPSEEAFAA 93 (320)
T ss_pred ceecHHHHHHHhc-CCCeEEEEeeccccCCCCchHHHHHh-ccC------CCCeecCHHHhcCCCCCcCCCCCCHHHHHH
Confidence 3699999999997 5789999996 3 378986 777 5999999753211 12222
Q ss_pred HhhhhcCCCCCCeEEEEeCCCch-HHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCCCC
Q 020170 196 KLSLKFKEPENTTLFILDKFDGN-SELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (330)
Q Consensus 196 ~L~~~~~~~kdk~IVv~C~sG~R-S~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~~~ 257 (330)
.+. .+...++++||+||+.|.+ +..++..|+..||++|++|.||+. +|+++|+|+...
T Consensus 94 ~l~-~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~---~W~~~G~pv~~~ 152 (320)
T PLN02723 94 AVS-ALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLP---KWRASGYDVESS 152 (320)
T ss_pred HHH-HcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHH---HHHHcCCCcccC
Confidence 232 2345678999999999876 456778899999999999999998 999999998763
No 47
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.40 E-value=1.3e-12 Score=110.22 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=75.8
Q ss_pred cCHHHHHHHhcCC-CCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCc----chH--------HHhhhhcCCCC
Q 020170 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKP----GFL--------KKLSLKFKEPE 205 (330)
Q Consensus 139 Is~~ea~~ll~~~-~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~----~fl--------~~L~~~~~~~k 205 (330)
|+|+++.++++++ ++.++||||++.||+. ||+ ++|+|+|+..+... ... ++...++...+
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~-~hI------~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSS-SHI------RGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRGE 74 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhh-Ccc------cCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcCC
Confidence 7899999999753 5799999999999986 777 49999998631100 000 01111222236
Q ss_pred CCeEEEEeCCCch---------HHHHHHHHHH--cCCCcEEEccCCCCChHHHhh
Q 020170 206 NTTLFILDKFDGN---------SELVAELVTI--NGFKNAYTIKDGAEGPRGWMN 249 (330)
Q Consensus 206 dk~IVv~C~sG~R---------S~~AA~~L~~--~Gf~~Vy~L~GGi~g~~aW~~ 249 (330)
+++|||||..|.+ +..+++.|.+ .|+.+|+.|+||+. +|++
T Consensus 75 ~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~---~w~~ 126 (132)
T cd01446 75 SLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFE---QFSS 126 (132)
T ss_pred CCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHH---HHHh
Confidence 7899999998876 7888899988 58889999999997 9976
No 48
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.39 E-value=6.9e-13 Score=128.61 Aligned_cols=109 Identities=11% Similarity=0.087 Sum_probs=84.3
Q ss_pred cCHHHHHHHhcCCCCcEEEEeCChhhhh----------hcCCCCCCCCCCCcEEeccCCCCCc--ch--HHHhhhhc---
Q 020170 139 ESARNAYAKLGDDASAQLLDIRAPVEFR----------QVGSPDVRGLGKRPVSIVYKGDDKP--GF--LKKLSLKF--- 201 (330)
Q Consensus 139 Is~~ea~~ll~~~~~avLIDVR~~~Ef~----------~~Ghp~l~~~~~gAinIPl~~~~~~--~f--l~~L~~~~--- 201 (330)
++.+++.+.++ +++.++||+|++.||. ..||| +||+|+|+..+.+. .| .+++++.+
T Consensus 192 ~~~~~v~~~~~-~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHI------PgAvnip~~~~~~~~~~~~~~~el~~~~~~~ 264 (320)
T PLN02723 192 WTLEQVKKNIE-DKTYQHIDARSKARFDGAAPEPRKGIRSGHI------PGSKCVPFPQMLDSSQTLLPAEELKKRFEQE 264 (320)
T ss_pred ecHHHHHHhhc-CCCeEEEECCCcccccCCCCCCCCCCcCCcC------CCCcccCHHHhcCCCCCCCCHHHHHHHHHhc
Confidence 57888888886 5678999999999993 23566 69999998542111 01 12333323
Q ss_pred CCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhC-CCCCCCC
Q 020170 202 KEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNS-GLPWIPP 257 (330)
Q Consensus 202 ~~~kdk~IVv~C~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~a-GLPv~~~ 257 (330)
..+++++||+||.+|.||..++-.|+.+||++|+++.||+. .|... ++|+..+
T Consensus 265 gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~---eW~~~~~~Pv~~~ 318 (320)
T PLN02723 265 GISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT---EWGALPDTPVATS 318 (320)
T ss_pred CCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH---HHhcCCCCCccCC
Confidence 35788999999999999999999999999999999999997 99876 6888754
No 49
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.39 E-value=5.6e-13 Score=129.27 Aligned_cols=91 Identities=16% Similarity=0.268 Sum_probs=68.8
Q ss_pred CcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCC----------------------------cchHHHhhhhcCCC
Q 020170 153 SAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK----------------------------PGFLKKLSLKFKEP 204 (330)
Q Consensus 153 ~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~----------------------------~~fl~~L~~~~~~~ 204 (330)
+.++||||+|.||.+ ||+ +||+|||+...++ +.+++++.. + .+
T Consensus 2 ~~~liDVRsp~Ef~~-ghi------pgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~-~-~~ 72 (311)
T TIGR03167 2 FDPLIDVRSPAEFAE-GHL------PGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRA-F-AD 72 (311)
T ss_pred CCEEEECCCHHHHhc-CCC------cCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHh-h-cC
Confidence 568999999999997 777 4999999953211 001112211 1 23
Q ss_pred CCCeEEEEe-CCCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCCC
Q 020170 205 ENTTLFILD-KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIP 256 (330)
Q Consensus 205 kdk~IVv~C-~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~~ 256 (330)
++++||+|| ++|.||..++..|+++|| +|++++||+. +|+..+.+...
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~---aw~~~~~~~~~ 121 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYK---AYRRFVIDQLE 121 (311)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHH---HHHHhhhhhhh
Confidence 455699999 578999999999999999 6999999997 99998877654
No 50
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.38 E-value=9.3e-13 Score=129.40 Aligned_cols=103 Identities=15% Similarity=0.223 Sum_probs=75.9
Q ss_pred CHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCC-------------------------cchH
Q 020170 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK-------------------------PGFL 194 (330)
Q Consensus 140 s~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~-------------------------~~fl 194 (330)
...++.+++. ++.++||||+|.||.. ||+ +||+|+|+.+..+ +.+.
T Consensus 4 ~~~~~~~~~~--~~~~lIDVRsp~Ef~~-ghI------pgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~ 74 (345)
T PRK11784 4 DAQDFRALFL--NDTPLIDVRSPIEFAE-GHI------PGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIA 74 (345)
T ss_pred cHHHHHHHHh--CCCEEEECCCHHHHhc-CCC------CCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHH
Confidence 4566666653 5789999999999997 777 4999999953210 0111
Q ss_pred HHhhhhcCC--CCCCeEEEEe-CCCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCC
Q 020170 195 KKLSLKFKE--PENTTLFILD-KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWI 255 (330)
Q Consensus 195 ~~L~~~~~~--~kdk~IVv~C-~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~ 255 (330)
+.+.+.+.. .++++||+|| ++|.||..++..|..+|| +|+++.||+. +|+..+++..
T Consensus 75 ~~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~---awr~~~~~~~ 134 (345)
T PRK11784 75 AHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYK---AYRRFVIDTL 134 (345)
T ss_pred HHHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHH---HHHHhhHHHH
Confidence 111111111 3789999999 578999999999999999 6999999997 9998776543
No 51
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.35 E-value=2.4e-12 Score=134.83 Aligned_cols=112 Identities=14% Similarity=0.182 Sum_probs=87.4
Q ss_pred ccCHHHHHHHhcCCCCcEEEEeCChhhhh-------hcCCCCCCCCCCCcEEeccCCC-------CCcchHHHhhhhcCC
Q 020170 138 VESARNAYAKLGDDASAQLLDIRAPVEFR-------QVGSPDVRGLGKRPVSIVYKGD-------DKPGFLKKLSLKFKE 203 (330)
Q Consensus 138 ~Is~~ea~~ll~~~~~avLIDVR~~~Ef~-------~~Ghp~l~~~~~gAinIPl~~~-------~~~~fl~~L~~~~~~ 203 (330)
.++.+++.+.++ +++.++||+|+++||. ..||| +||+|+|+... ..++-++++-.....
T Consensus 148 ~v~~e~v~~~l~-~~~~~iIDaR~~~ef~G~~~~~~r~GHI------PGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi 220 (610)
T PRK09629 148 TATREYLQSRLG-AADLAIWDARAPTEYSGEKVVAAKGGHI------PGAVNFEWTAGMDKARNLRIRQDMPEILRDLGI 220 (610)
T ss_pred cccHHHHHHhhC-CCCcEEEECCCccccCCcccccccCCCC------CCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCC
Confidence 478889988886 6788999999999995 23777 59999998531 111112222222245
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhC-CCCCCCCCC
Q 020170 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNS-GLPWIPPKK 259 (330)
Q Consensus 204 ~kdk~IVv~C~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~a-GLPv~~~kk 259 (330)
+++++||+||.+|.||..++-.|+.+||++|++++||+. .|.+. ++|++.+..
T Consensus 221 ~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~---eW~~~~~lPv~~~~~ 274 (610)
T PRK09629 221 TPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWG---EWGNHPDTPVEVPTV 274 (610)
T ss_pred CCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHH---HHhCCCCCccccCCC
Confidence 789999999999999999999999999999999999997 99875 799887653
No 52
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.25 E-value=2.6e-11 Score=104.37 Aligned_cols=100 Identities=17% Similarity=0.128 Sum_probs=75.4
Q ss_pred cCHHHHHHHhcC---CCCcEEEEeCCh--------hhhhhc-----------CCCCCCCCCCCcEEeccCCCC-------
Q 020170 139 ESARNAYAKLGD---DASAQLLDIRAP--------VEFRQV-----------GSPDVRGLGKRPVSIVYKGDD------- 189 (330)
Q Consensus 139 Is~~ea~~ll~~---~~~avLIDVR~~--------~Ef~~~-----------Ghp~l~~~~~gAinIPl~~~~------- 189 (330)
+|++++.+.++. +++.++||+|.. +||... ||| +||+++|+.+..
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHI------PgAv~~~~~~~~~~~~~~~ 74 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHI------PGASFFDFEECLDEAGFEE 74 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcC------CCCEeeCHHHhhCcCCCCC
Confidence 578889888863 467999999987 889751 566 599999975311
Q ss_pred ----Cc-chHHHhhhhcCCCCCCeEEEEeCC---CchHHHHHHHHHHcCCCcEEEccCCCCChHHHh
Q 020170 190 ----KP-GFLKKLSLKFKEPENTTLFILDKF---DGNSELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (330)
Q Consensus 190 ----~~-~fl~~L~~~~~~~kdk~IVv~C~s---G~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~ 248 (330)
++ .|.+.+ ..+...++++||+||.. |.++..+.=.|+.+|+++|+++.||+. +|+
T Consensus 75 ~~~p~~~~~~~~~-~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~---~W~ 137 (138)
T cd01445 75 SMEPSEAEFAAMF-EAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF---EWF 137 (138)
T ss_pred CCCCCHHHHHHHH-HHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH---Hhh
Confidence 00 222222 22356788999999986 677888888999999999999999997 995
No 53
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.11 E-value=1.8e-10 Score=117.68 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=64.0
Q ss_pred HHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCC----cEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCCCc
Q 020170 142 RNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKR----PVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (330)
Q Consensus 142 ~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~g----AinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~sG~ 217 (330)
.+..+.+ .+++++||||+++||+. +|+ +| ++|+|+.++ ...+.. .++++++|+||++|.
T Consensus 398 ~~~~~~~--~~~~~lIDVR~~~E~~~-~hI------~g~~~~a~niP~~~l-----~~~~~~---l~~~~~iivyC~~G~ 460 (482)
T PRK01269 398 VETVSEL--PPDDVIIDIRSPDEQED-KPL------KLEGVEVKSLPFYKL-----STQFGD---LDQSKTYLLYCDRGV 460 (482)
T ss_pred hHHHHhc--CCCCEEEECCCHHHHhc-CCC------CCCCceEEECCHHHH-----HHHHhh---cCCCCeEEEECCCCH
Confidence 3344444 36789999999999997 777 38 999998642 222322 367899999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEccC
Q 020170 218 NSELVAELVTINGFKNAYTIKD 239 (330)
Q Consensus 218 RS~~AA~~L~~~Gf~~Vy~L~G 239 (330)
||..|+..|+++||+||+++.+
T Consensus 461 rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 461 MSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred HHHHHHHHHHHcCCccEEecCC
Confidence 9999999999999999998753
No 54
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.05 E-value=6.2e-10 Score=106.96 Aligned_cols=109 Identities=14% Similarity=0.081 Sum_probs=82.2
Q ss_pred cCHHHHHHHhcCCCCcEEEEeCChhhhhh---------cCCCCCCCCCCCcEEeccCCCCCc-------chHHHhhhhcC
Q 020170 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQ---------VGSPDVRGLGKRPVSIVYKGDDKP-------GFLKKLSLKFK 202 (330)
Q Consensus 139 Is~~ea~~ll~~~~~avLIDVR~~~Ef~~---------~Ghp~l~~~~~gAinIPl~~~~~~-------~fl~~L~~~~~ 202 (330)
.+..+....+. .+..++||+|+++||.- .||| +||+||||.+..++ +.++.+.+...
T Consensus 158 ~~~~~~~~~~~-~~~~~liDaR~~~rf~G~~~ep~~~~~GHI------PGAiNipw~~~~~~~~~~~~~~~~~~l~~~~g 230 (285)
T COG2897 158 VDATLVADALE-VPAVLLIDARSPERFRGKEPEPRDGKAGHI------PGAINIPWTDLVDDGGLFKSPEEIARLYADAG 230 (285)
T ss_pred CCHHHHHHHhc-CCCeEEEecCCHHHhCCCCCCCCCCCCCCC------CCCcCcCHHHHhcCCCccCcHHHHHHHHHhcC
Confidence 56666666665 67888999999999984 2555 79999999753221 11222221224
Q ss_pred CCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCC-CCCCCC
Q 020170 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSG-LPWIPP 257 (330)
Q Consensus 203 ~~kdk~IVv~C~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aG-LPv~~~ 257 (330)
.++++++|+||.+|.||....-.|+.+|+.++.++.|++. .|-+.. .|+..+
T Consensus 231 i~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWs---EWg~~~~~PV~~g 283 (285)
T COG2897 231 IDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWS---EWGSDPDRPVETG 283 (285)
T ss_pred CCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHH---HhhcCCCCccccC
Confidence 6789999999999999999999999999998889999886 887764 477765
No 55
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.88 E-value=1.3e-09 Score=106.44 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=79.8
Q ss_pred cccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCCC
Q 020170 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFD 216 (330)
Q Consensus 137 g~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~sG 216 (330)
..||..+..+++++.+..+++|||++.||+..+.| .++|||+.++++..- +++.... ....++|+|+|+.|
T Consensus 317 ~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP-------~avNIPL~~l~~~~~-~~~~~~~-~~~~~~I~ViCrrG 387 (427)
T KOG2017|consen 317 ERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLP-------EAVNIPLKELRSRSG-KKLQGDL-NTESKDIFVICRRG 387 (427)
T ss_pred hcccHHHHHHHHhcCCCeEEEeccCcceEEEEecc-------cccccchhhhhhhhh-hhhcccc-cccCCCEEEEeCCC
Confidence 46999999999987789999999999999987777 899999986543211 2222111 34568899999999
Q ss_pred chHHHHHHHHHHcCC-CcEEEccCCCCChHHHhhC
Q 020170 217 GNSELVAELVTINGF-KNAYTIKDGAEGPRGWMNS 250 (330)
Q Consensus 217 ~RS~~AA~~L~~~Gf-~~Vy~L~GGi~g~~aW~~a 250 (330)
+.|..|.+.|++..+ .+|..+.||.. +|...
T Consensus 388 NdSQ~Av~~Lre~~~~~~vrDvigGl~---~w~~~ 419 (427)
T KOG2017|consen 388 NDSQRAVRILREKFPDSSVRDVIGGLK---AWAAK 419 (427)
T ss_pred CchHHHHHHHHhhCCchhhhhhhhHHH---HHHHh
Confidence 999999999997654 46777888886 99775
No 56
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.67 E-value=1.3e-07 Score=91.11 Aligned_cols=108 Identities=20% Similarity=0.260 Sum_probs=82.1
Q ss_pred ccCHHHHHHHhcCCC-----CcEEEEeCCh--hhhhhcCCCCCCCCCCCcEEeccCCC-----------CCcchHHHhhh
Q 020170 138 VESARNAYAKLGDDA-----SAQLLDIRAP--VEFRQVGSPDVRGLGKRPVSIVYKGD-----------DKPGFLKKLSL 199 (330)
Q Consensus 138 ~Is~~ea~~ll~~~~-----~avLIDVR~~--~Ef~~~Ghp~l~~~~~gAinIPl~~~-----------~~~~fl~~L~~ 199 (330)
.++++-+.+.+. ++ ++.+++++.. .+|.+ +|| +||+.++++.. .+++..+++-.
T Consensus 12 lVs~~wl~~~l~-~~~~~~~d~~~~~~~~~~~~~Y~~-~HI------PGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~ 83 (285)
T COG2897 12 LVSPDWLAENLD-DPAVVIVDARIILPDPDDAEEYLE-GHI------PGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLG 83 (285)
T ss_pred EEcHHHHHhhcc-ccccccCceEEEeCCcchHHHHHh-ccC------CCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHH
Confidence 488888888875 34 7777777776 78886 776 49999987631 12122222323
Q ss_pred hcCCCCCCeEEEEeCCCc-hHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCCC
Q 020170 200 KFKEPENTTLFILDKFDG-NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIP 256 (330)
Q Consensus 200 ~~~~~kdk~IVv~C~sG~-RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~~ 256 (330)
.....+|.+||+|+..|+ -+..|.=.|+-+|.++|++|.||+. +|+++|+|+..
T Consensus 84 ~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~---~W~~~g~p~~~ 138 (285)
T COG2897 84 ELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLP---AWKAAGLPLET 138 (285)
T ss_pred HcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHH---HHHHcCCCccC
Confidence 345788999999997665 5777888899999999999999997 99999999885
No 57
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.01 E-value=7.4e-06 Score=79.92 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=75.3
Q ss_pred CCCCCcccCHHHHHHHhcCC-----CCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHH-HhhhhcCCCC
Q 020170 132 KPKSWGVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLK-KLSLKFKEPE 205 (330)
Q Consensus 132 ~~~~~g~Is~~ea~~ll~~~-----~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~-~L~~~~~~~k 205 (330)
+-..++.||++++..+++.. ...++||.|-|.||.. ||| +||+||+..+...+-|.. .... ...+
T Consensus 151 k~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~G-GHI------kgavnl~~~~~~~~~f~~~~~~~--~~~~ 221 (325)
T KOG3772|consen 151 KSQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEG-GHI------KGAVNLYSKELLQDFFLLKDGVP--SGSK 221 (325)
T ss_pred ccccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccC-ccc------ccceecccHhhhhhhhccccccc--cccC
Confidence 44456789999999999631 2367899999999995 888 699999975421111111 1100 0123
Q ss_pred CCeEEEEeCCC-chHHHHHHHHHH------------cCCCcEEEccCCCCChHHHhhC
Q 020170 206 NTTLFILDKFD-GNSELVAELVTI------------NGFKNAYTIKDGAEGPRGWMNS 250 (330)
Q Consensus 206 dk~IVv~C~sG-~RS~~AA~~L~~------------~Gf~~Vy~L~GGi~g~~aW~~a 250 (330)
..-+|++|... .|.-++|+.|+. .-|..+|+|+||+. .|...
T Consensus 222 ~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk---~ff~~ 276 (325)
T KOG3772|consen 222 RVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYK---EFFSN 276 (325)
T ss_pred ceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHH---HHHHh
Confidence 46799999855 688889999983 45678999999997 77654
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=97.38 E-value=0.001 Score=64.05 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=77.2
Q ss_pred ccCHHHHHHHhcCCCCcEEEEeC---------ChhhhhhcCCCCCCCCCCCcEEeccCCCC-----------C-cchHHH
Q 020170 138 VESARNAYAKLGDDASAQLLDIR---------APVEFRQVGSPDVRGLGKRPVSIVYKGDD-----------K-PGFLKK 196 (330)
Q Consensus 138 ~Is~~ea~~ll~~~~~avLIDVR---------~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~-----------~-~~fl~~ 196 (330)
.++++-+.+.+. +++.++||-- ...||...|+| |+.|+.++.+. . +.|.+
T Consensus 6 iv~~~~v~~~~~-~~~~~iLDaSw~~~~~~~~~~~e~~~~hip-------ga~~fdld~~~~~s~~~~~~lp~~e~Fa~- 76 (286)
T KOG1529|consen 6 IVSVKWVMENLG-NHGLRILDASWYFPPLRRIAEFEFLERHIP-------GASHFDLDIISYPSSPYRHMLPTAEHFAE- 76 (286)
T ss_pred ccChHHHHHhCc-CCCeEEEeeeeecCchhhhhhhhhhhccCC-------CceeeeccccccCCCcccccCccHHHHHH-
Confidence 366777777775 5788899853 33467654444 89998776421 1 12322
Q ss_pred hhhhcCCCCCCeEEEEeC--CCch-HHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCCCCC
Q 020170 197 LSLKFKEPENTTLFILDK--FDGN-SELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (330)
Q Consensus 197 L~~~~~~~kdk~IVv~C~--sG~R-S~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~~~k 258 (330)
...++..+.+..+|||++ .|.- |.++.=.++-.|+++|+.|.||+. +|+..|.|+...+
T Consensus 77 y~~~lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~---~Wk~~g~~~~s~~ 138 (286)
T KOG1529|consen 77 YASRLGVDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFR---AWKAAGGPVDSSK 138 (286)
T ss_pred HHHhcCCCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHH---HHHHcCCcccccc
Confidence 223345677889999999 6654 555666788899999999999997 9999999987654
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=96.81 E-value=0.0022 Score=61.88 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=65.9
Q ss_pred CCCcEEEEeCChhhhhhcCCCC----C-CCCCCCcEEeccCCCCC-cchH---HHhhhhc---CCCCCCeEEEEeCCCch
Q 020170 151 DASAQLLDIRAPVEFRQVGSPD----V-RGLGKRPVSIVYKGDDK-PGFL---KKLSLKF---KEPENTTLFILDKFDGN 218 (330)
Q Consensus 151 ~~~avLIDVR~~~Ef~~~Ghp~----l-~~~~~gAinIPl~~~~~-~~fl---~~L~~~~---~~~kdk~IVv~C~sG~R 218 (330)
..+...+|-|...+|.-. .|. + .++++|++|+|+.+.-. ..++ +++...+ +...++|+|+-|..|..
T Consensus 170 ~~~~~~~DaRs~grF~Gt-~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gis 248 (286)
T KOG1529|consen 170 TKNFQYLDARSKGRFDGT-EPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGIS 248 (286)
T ss_pred cccceeeecccccccccc-CCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchh
Confidence 356899999999999732 110 0 13457999999875211 1122 2333222 23457999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEccCCCCChHHHhh
Q 020170 219 SELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (330)
Q Consensus 219 S~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~ 249 (330)
+...+-.+...| .+|..+.|++. .|.-
T Consensus 249 a~~i~~al~r~g-~~~~lYdGS~~---Ew~~ 275 (286)
T KOG1529|consen 249 ASIIALALERSG-PDAKLYDGSWT---EWAL 275 (286)
T ss_pred HHHHHHHHHhcC-CCcceecccHH---HHhh
Confidence 999999999999 78888889886 7764
No 60
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.38 E-value=0.014 Score=50.08 Aligned_cols=86 Identities=10% Similarity=0.028 Sum_probs=52.4
Q ss_pred cccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCC-------CCCCCcEEeccCCC-CCcchHHHhhhhcCCCCCCe
Q 020170 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVR-------GLGKRPVSIVYKGD-DKPGFLKKLSLKFKEPENTT 208 (330)
Q Consensus 137 g~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~-------~~~~gAinIPl~~~-~~~~fl~~L~~~~~~~kdk~ 208 (330)
+.+++++...+-. ..=-.+||.|++.|.+ +.|+.. ..+-.-+|+|+..- .++.-+..+...+. ..++|
T Consensus 13 ~qlt~~d~~~L~~-~GiktVIdlR~~~E~~--~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~~~-~~~~p 88 (135)
T TIGR01244 13 PQLTKADAAQAAQ-LGFKTVINNRPDREEE--SQPDFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAAIG-AAEGP 88 (135)
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCC--CCCCHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHHHH-hCCCC
Confidence 5789999877654 4557899999988754 223210 01124578886531 12222333332232 34689
Q ss_pred EEEEeCCCchHHHHHHHH
Q 020170 209 LFILDKFDGNSELVAELV 226 (330)
Q Consensus 209 IVv~C~sG~RS~~AA~~L 226 (330)
|+++|++|.|+..++..+
T Consensus 89 vL~HC~sG~Rt~~l~al~ 106 (135)
T TIGR01244 89 VLAYCRSGTRSSLLWGFR 106 (135)
T ss_pred EEEEcCCChHHHHHHHHH
Confidence 999999999988866543
No 61
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=96.36 E-value=0.0038 Score=50.60 Aligned_cols=47 Identities=26% Similarity=0.284 Sum_probs=36.5
Q ss_pred hHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHhhhhhccccC
Q 020170 284 SVTLAIAAAAGLGVLAFSEIETILQILGSAALVQFASKKLLFAEVNR 330 (330)
Q Consensus 284 p~~~~~aa~~g~Gl~~~~e~e~~lq~~g~~~~~~~~~~~~~~a~~~~ 330 (330)
.++.++++++...+=..==+..+||++|..-.+.|++|+|||+|||+
T Consensus 29 iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R~ 75 (90)
T PF14159_consen 29 IVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENRQ 75 (90)
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhHH
Confidence 44555555555444444447889999999999999999999999996
No 62
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.33 E-value=0.012 Score=49.24 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=41.1
Q ss_pred cccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCC---C----CCCCCcEEeccCCC-CCcchHHHhhhhcCCCCCCe
Q 020170 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDV---R----GLGKRPVSIVYKGD-DKPGFLKKLSLKFKEPENTT 208 (330)
Q Consensus 137 g~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l---~----~~~~gAinIPl~~~-~~~~fl~~L~~~~~~~kdk~ 208 (330)
+.++++++.++-. ..=-.+|+.|+..|-. +.|.. + .++-.-+|+|.... .++..+..+.+.+. ..++|
T Consensus 13 ~Q~~~~d~~~la~-~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~-~~~~P 88 (110)
T PF04273_consen 13 GQPSPEDLAQLAA-QGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE-SLPKP 88 (110)
T ss_dssp CS--HHHHHHHHH-CT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH-TTTTS
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH-hCCCC
Confidence 5799999988876 5567899999886532 11100 0 01124688998641 11222233332221 23579
Q ss_pred EEEEeCCCchHHHHHHH
Q 020170 209 LFILDKFDGNSELVAEL 225 (330)
Q Consensus 209 IVv~C~sG~RS~~AA~~ 225 (330)
|+++|++|.||......
T Consensus 89 vl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 89 VLAHCRSGTRASALWAL 105 (110)
T ss_dssp EEEE-SCSHHHHHHHHH
T ss_pred EEEECCCChhHHHHHHH
Confidence 99999999999765443
No 63
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=95.34 E-value=0.027 Score=55.50 Aligned_cols=112 Identities=20% Similarity=0.251 Sum_probs=75.2
Q ss_pred CCCcccCHHHHHHHhcCC-----CCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhc---CCCC
Q 020170 134 KSWGVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKF---KEPE 205 (330)
Q Consensus 134 ~~~g~Is~~ea~~ll~~~-----~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~---~~~k 205 (330)
..++.|+++.+..+++.. .+.++||-|=+.||.. ||| .+|+||.-.+ +|...| +...
T Consensus 239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~G-GHI------inaVNi~s~~--------~l~~~F~hkplTh 303 (427)
T COG5105 239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRG-GHI------INAVNISSTK--------KLGLLFRHKPLTH 303 (427)
T ss_pred cchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecC-cee------eeeeecchHH--------HHHHHHHhccccC
Confidence 346789999999988631 3467999999999995 887 4899987432 222222 1122
Q ss_pred CCeEEEEeCCC-chHHHHHHHHHHc------------CCCcEEEccCCCCChHHHhhCCCC-CCCCCCCcccC
Q 020170 206 NTTLFILDKFD-GNSELVAELVTIN------------GFKNAYTIKDGAEGPRGWMNSGLP-WIPPKKALGLD 264 (330)
Q Consensus 206 dk~IVv~C~sG-~RS~~AA~~L~~~------------Gf~~Vy~L~GGi~g~~aW~~aGLP-v~~~kk~~~ld 264 (330)
.+-+|+.|... .|+-..|..|+.. =|..||+|+||+. ..-. +.| +-.|+.-..|+
T Consensus 304 p~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk---~fy~-n~p~lCdP~~YV~Mn 372 (427)
T COG5105 304 PRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYK---KFYS-NYPDLCDPKGYVTMN 372 (427)
T ss_pred ceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHH---HHhh-cCccccCcccccccc
Confidence 46699999854 6777788877632 3678999999985 5544 344 44454444454
No 64
>PLN02777 photosystem I P subunit (PSI-P)
Probab=94.29 E-value=0.028 Score=50.30 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccC
Q 020170 303 IETILQILGSAALVQFASKKLLFAEVNR 330 (330)
Q Consensus 303 ~e~~lq~~g~~~~~~~~~~~~~~a~~~~ 330 (330)
+-.+||++|..=.++|+||+|||.|||+
T Consensus 123 lP~lLELVGigYs~WF~yRyLLfke~Re 150 (167)
T PLN02777 123 VPGVLELVGIGYTGWFAYKNLVFKPDRE 150 (167)
T ss_pred ccchHHHhhhhhhhhhhhhHhcCcccHH
Confidence 4578999999999999999999999996
No 65
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=89.17 E-value=1.3 Score=36.64 Aligned_cols=71 Identities=7% Similarity=-0.037 Sum_probs=40.8
Q ss_pred CCCcEEEEeCChhhhh--hcCCCCCCCCCCCcEEeccCCCCCcchH-------HHhhhhcCCCCCCeEEEEeCCCc-hHH
Q 020170 151 DASAQLLDIRAPVEFR--QVGSPDVRGLGKRPVSIVYKGDDKPGFL-------KKLSLKFKEPENTTLFILDKFDG-NSE 220 (330)
Q Consensus 151 ~~~avLIDVR~~~Ef~--~~Ghp~l~~~~~gAinIPl~~~~~~~fl-------~~L~~~~~~~kdk~IVv~C~sG~-RS~ 220 (330)
..-..+||+|+..++. ..+.+ .-.|+|+.+...+... +-+... ...+++|+|.|..|. ||.
T Consensus 26 ~gi~~VI~l~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~i~~~--~~~~~~vlVHC~~G~~Rs~ 96 (139)
T cd00127 26 LGITHVLNVAKEVPNENLFLSDF-------NYLYVPILDLPSQDISKYFDEAVDFIDDA--REKGGKVLVHCLAGVSRSA 96 (139)
T ss_pred cCCCEEEEcccCCCCcccCCCCc-------eEEEEEceeCCCCChHHHHHHHHHHHHHH--HhcCCcEEEECCCCCchhH
Confidence 4456899999998861 11222 4678887653322221 112111 234689999999996 877
Q ss_pred HH-H-HHHHHcC
Q 020170 221 LV-A-ELVTING 230 (330)
Q Consensus 221 ~A-A-~~L~~~G 230 (330)
.+ + -.+...|
T Consensus 97 ~~~~~~l~~~~~ 108 (139)
T cd00127 97 TLVIAYLMKTLG 108 (139)
T ss_pred HHHHHHHHHHcC
Confidence 53 3 3344444
No 66
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=88.58 E-value=1.9 Score=35.91 Aligned_cols=74 Identities=7% Similarity=0.019 Sum_probs=41.6
Q ss_pred CCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhh---hhc--CCCCCCeEEEEeCCCc-hHHH--H
Q 020170 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLS---LKF--KEPENTTLFILDKFDG-NSEL--V 222 (330)
Q Consensus 151 ~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~---~~~--~~~kdk~IVv~C~sG~-RS~~--A 222 (330)
..=..+||+++..+......+ .-+++|+.+.......+.+. +.+ ...++++|+|.|..|. ||.. +
T Consensus 25 ~gi~~Vi~l~~~~~~~~~~~~-------~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 97 (138)
T smart00195 25 LGITHVINVTNEVPNLNKKGF-------TYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLII 97 (138)
T ss_pred cCCCEEEEccCCCCCCCCCCC-------EEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHH
Confidence 345678999987654221112 46888876522212222111 111 1356789999999995 8776 3
Q ss_pred HHHHHHcCC
Q 020170 223 AELVTINGF 231 (330)
Q Consensus 223 A~~L~~~Gf 231 (330)
+..+...|+
T Consensus 98 ~yl~~~~~~ 106 (138)
T smart00195 98 AYLMKYRNL 106 (138)
T ss_pred HHHHHHhCC
Confidence 344555665
No 67
>COG2603 Predicted ATPase [General function prediction only]
Probab=86.80 E-value=0.68 Score=45.39 Aligned_cols=81 Identities=25% Similarity=0.340 Sum_probs=51.4
Q ss_pred CCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCC-------------c---------------chHHHhhhhcCC
Q 020170 152 ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK-------------P---------------GFLKKLSLKFKE 203 (330)
Q Consensus 152 ~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~-------------~---------------~fl~~L~~~~~~ 203 (330)
.+..+||||.|-||.. |+- ++++|.|....+. + .++-...+++
T Consensus 14 ~~~~lid~rap~ef~~-g~~------~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f-- 84 (334)
T COG2603 14 ADTPLIDVRAPIEFEN-GAM------PIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF-- 84 (334)
T ss_pred cCCceeeccchHHHhc-ccc------hhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH--
Confidence 4788999999999997 554 3789998652110 0 0000011111
Q ss_pred CCCCeEEEEeCCC-chHHHHHHHH-HHcCCCcEEEccCCCC
Q 020170 204 PENTTLFILDKFD-GNSELVAELV-TINGFKNAYTIKDGAE 242 (330)
Q Consensus 204 ~kdk~IVv~C~sG-~RS~~AA~~L-~~~Gf~~Vy~L~GGi~ 242 (330)
..+.|+-++|..| .||...+.+| ...|+.- --+.||..
T Consensus 85 ~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~~-~r~iGGeK 124 (334)
T COG2603 85 QEENPVGILCARGGLRSKIVQKWLGYAAGIDY-PRVIGGEK 124 (334)
T ss_pred HHhCCcceeeccccchhHHHHHHHHHHHHhhh-hhhhchHH
Confidence 2345666668765 5899999999 7788753 35668875
No 68
>PLN02727 NAD kinase
Probab=83.22 E-value=3 Score=46.64 Aligned_cols=88 Identities=13% Similarity=0.073 Sum_probs=52.1
Q ss_pred cccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCC--CC----CCCCCcEEeccCC--CCCcchHHHhhhhcCCCCCCe
Q 020170 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPD--VR----GLGKRPVSIVYKG--DDKPGFLKKLSLKFKEPENTT 208 (330)
Q Consensus 137 g~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~--l~----~~~~gAinIPl~~--~~~~~fl~~L~~~~~~~kdk~ 208 (330)
+.++++++.++.+ ..=-.+|+.|+..|-. +... .. .++-.-+|+|+.. ...++.++++.+.+.....+|
T Consensus 267 gQpspe~la~LA~-~GfKTIINLRpd~E~~--q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slpkP 343 (986)
T PLN02727 267 GQVTEEGLKWLLE-KGFKTIVDLRAEIVKD--NFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKKP 343 (986)
T ss_pred CCCCHHHHHHHHH-CCCeEEEECCCCCcCC--CchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcCCC
Confidence 6799999977765 4456799999988721 1110 00 0112578999843 112233344433332234799
Q ss_pred EEEEeCCCchH--HHHHHHHH
Q 020170 209 LFILDKFDGNS--ELVAELVT 227 (330)
Q Consensus 209 IVv~C~sG~RS--~~AA~~L~ 227 (330)
|+++|++|.|+ ..+|.+++
T Consensus 344 VLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 344 IYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred EEEECCCCCchHHHHHHHHHH
Confidence 99999999843 33555555
No 69
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=78.83 E-value=7.6 Score=33.77 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=23.9
Q ss_pred CcccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccC
Q 020170 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYK 186 (330)
Q Consensus 136 ~g~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~ 186 (330)
...+|+++...+.. -.=-.+||.|++.|.+....+.+. ....+|+|+.
T Consensus 27 l~~lt~~d~~~L~~-lgI~tIiDLRs~~E~~~~p~~~~~--g~~~~~~p~~ 74 (164)
T PF13350_consen 27 LSNLTEADLERLRE-LGIRTIIDLRSPTERERAPDPLID--GVQYVHIPIF 74 (164)
T ss_dssp -TT--HHHHHHHHH-TT--EEEE-S-HHHHHHHS----T--T-EEEE--SS
T ss_pred cCcCCHHHHHHHHh-CCCCEEEECCCccccccCCCCCcC--Cceeeeeccc
Confidence 45688998877764 456789999999999864322111 1235677765
No 70
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.92 E-value=14 Score=31.99 Aligned_cols=82 Identities=16% Similarity=0.086 Sum_probs=50.7
Q ss_pred cccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCC-------CCCCCcEEeccCC--CCC---cchHHHhhhhcCCC
Q 020170 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVR-------GLGKRPVSIVYKG--DDK---PGFLKKLSLKFKEP 204 (330)
Q Consensus 137 g~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~-------~~~~gAinIPl~~--~~~---~~fl~~L~~~~~~~ 204 (330)
+.++++++.++-. ..=..+|--|+..|-. +-|+.. .++-.-.|||... +.. +.|...+. .
T Consensus 14 gQi~~~D~~~iaa-~GFksiI~nRPDgEe~--~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~-----e 85 (130)
T COG3453 14 GQISPADIASIAA-LGFKSIICNRPDGEEP--GQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALD-----E 85 (130)
T ss_pred CCCCHHHHHHHHH-hccceecccCCCCCCC--CCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHH-----H
Confidence 6799999888765 3445688888876642 333211 0111256788753 221 12444443 2
Q ss_pred CCCeEEEEeCCCchHHHHHHHH
Q 020170 205 ENTTLFILDKFDGNSELVAELV 226 (330)
Q Consensus 205 kdk~IVv~C~sG~RS~~AA~~L 226 (330)
-+.|++-||++|.||......-
T Consensus 86 aegPVlayCrsGtRs~~ly~~~ 107 (130)
T COG3453 86 AEGPVLAYCRSGTRSLNLYGLG 107 (130)
T ss_pred hCCCEEeeecCCchHHHHHHHH
Confidence 4789999999999998765443
No 71
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=66.85 E-value=8 Score=31.79 Aligned_cols=72 Identities=14% Similarity=0.115 Sum_probs=38.7
Q ss_pred CcEEEEeCChhhh---hhcCCCCCCCCCCCcEEeccCCCCCc---chHHHhhhhcC--CCCCCeEEEEeCCCc-hHHH-H
Q 020170 153 SAQLLDIRAPVEF---RQVGSPDVRGLGKRPVSIVYKGDDKP---GFLKKLSLKFK--EPENTTLFILDKFDG-NSEL-V 222 (330)
Q Consensus 153 ~avLIDVR~~~Ef---~~~Ghp~l~~~~~gAinIPl~~~~~~---~fl~~L~~~~~--~~kdk~IVv~C~sG~-RS~~-A 222 (330)
=..+|+++++.+. ...... .-.++|..+.... ..++++.+.+. ..++.+|+|.|..|. ||.. +
T Consensus 19 I~~Vin~~~~~~~~~~~~~~~~-------~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 91 (133)
T PF00782_consen 19 ITHVINLQEECPNPYFYKPEGI-------EYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVA 91 (133)
T ss_dssp EEEEEECSSSSSTSHHHTTTTS-------EEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHH
T ss_pred CCEEEEccCCCcCchhcccCCC-------EEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHH
Confidence 3468999987654 111222 4577886641111 12222211111 245789999999995 6655 3
Q ss_pred HH-HHHHcCC
Q 020170 223 AE-LVTINGF 231 (330)
Q Consensus 223 A~-~L~~~Gf 231 (330)
+. .+...|.
T Consensus 92 ~ayLm~~~~~ 101 (133)
T PF00782_consen 92 AAYLMKKNGM 101 (133)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHcCC
Confidence 44 4444554
No 72
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=64.55 E-value=7.9 Score=33.70 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=24.1
Q ss_pred CCCCeEEEEe-C----CCchHHHHHHHHHHcCCCcEEEccCCCC
Q 020170 204 PENTTLFILD-K----FDGNSELVAELVTINGFKNAYTIKDGAE 242 (330)
Q Consensus 204 ~kdk~IVv~C-~----sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~ 242 (330)
+++..++++| . .|..-..+++.|++.|..++.+|+||-.
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgS 141 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGS 141 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcc
Confidence 4555655555 4 3577778999999999999999999975
No 73
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=58.40 E-value=1.3 Score=43.38 Aligned_cols=83 Identities=12% Similarity=0.072 Sum_probs=52.9
Q ss_pred cCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEEEEeCC--C
Q 020170 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF--D 216 (330)
Q Consensus 139 Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IVv~C~s--G 216 (330)
-+++++.+.+. .....+|+|....|.. +|| +|++++|...+. .+..-+.. .+..+++++.-.. +
T Consensus 16 ~~~~~~~~~l~--~~~~~~d~rg~i~~a~-egI------ngtis~~~~~~~--~~~~~l~~---~~~~~~i~l~~~~~~~ 81 (314)
T PRK00142 16 EDPEAFRDEHL--ALCKSLGLKGRILVAE-EGI------NGTVSGTIEQTE--AYMAWLKA---DPRFADIRFKISEDDG 81 (314)
T ss_pred CCHHHHHHHHH--HHHHHcCCeeEEEEcC-CCc------eEEEEecHHHHH--HHHHHHhh---CcCCCCceEEeccccC
Confidence 46788877775 3577899999999997 555 399999974221 23333321 2335666666443 1
Q ss_pred ch----HHHHHHHHHHcCCC-cEE
Q 020170 217 GN----SELVAELVTINGFK-NAY 235 (330)
Q Consensus 217 ~R----S~~AA~~L~~~Gf~-~Vy 235 (330)
.. +.++.+.|...|+. ++.
T Consensus 82 ~~f~~l~~~~~~eLv~~G~d~~v~ 105 (314)
T PRK00142 82 HAFPRLSVKVRKEIVALGLDDDID 105 (314)
T ss_pred CCcccceeeeeeeeeecCCCCCCC
Confidence 22 25677777888885 553
No 74
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=57.35 E-value=71 Score=28.24 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=18.7
Q ss_pred CCCCeEEEEeCCC-chHHH-HHHHHHHc
Q 020170 204 PENTTLFILDKFD-GNSEL-VAELVTIN 229 (330)
Q Consensus 204 ~kdk~IVv~C~sG-~RS~~-AA~~L~~~ 229 (330)
.++.+|+|.|..| +||.. ++..|.+.
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~~ 123 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVEY 123 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999999999 57766 45555543
No 75
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=56.04 E-value=12 Score=31.38 Aligned_cols=34 Identities=9% Similarity=-0.020 Sum_probs=28.6
Q ss_pred EEEEeCCC-chHHHHHHHHHHc----CCCcEEEccCCCC
Q 020170 209 LFILDKFD-GNSELVAELVTIN----GFKNAYTIKDGAE 242 (330)
Q Consensus 209 IVv~C~sG-~RS~~AA~~L~~~----Gf~~Vy~L~GGi~ 242 (330)
|+++|... .||..|...+++. +-.++.+...|+.
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~ 39 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTE 39 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESS
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeec
Confidence 68999864 6999999988888 6678889999987
No 76
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=55.28 E-value=17 Score=32.96 Aligned_cols=72 Identities=19% Similarity=0.313 Sum_probs=31.0
Q ss_pred EEeCChhhhhhcCCCCCCC----CCCCcEEeccCCCCCcch------HHHhhhhcCCCCCCeEEEEeCCC-chHHH-HHH
Q 020170 157 LDIRAPVEFRQVGSPDVRG----LGKRPVSIVYKGDDKPGF------LKKLSLKFKEPENTTLFILDKFD-GNSEL-VAE 224 (330)
Q Consensus 157 IDVR~~~Ef~~~Ghp~l~~----~~~gAinIPl~~~~~~~f------l~~L~~~~~~~kdk~IVv~C~sG-~RS~~-AA~ 224 (330)
|=.-+..|....+.+++.. .+-...|+|+.+..-|++ .+++...+ ..+++|++.|+.| +|+.. ||.
T Consensus 76 vtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L--~~g~~V~vHC~GGlGRtGlvAAc 153 (168)
T PF05706_consen 76 VTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARL--ENGRKVLVHCRGGLGRTGLVAAC 153 (168)
T ss_dssp EE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHH--HTT--EEEE-SSSSSHHHHHHHH
T ss_pred EEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHH--HcCCEEEEECCCCCCHHHHHHHH
Confidence 3355666655555543321 111356777765322322 23333332 4478999999988 57666 677
Q ss_pred HHHHcC
Q 020170 225 LVTING 230 (330)
Q Consensus 225 ~L~~~G 230 (330)
.|.+.|
T Consensus 154 LLl~L~ 159 (168)
T PF05706_consen 154 LLLELG 159 (168)
T ss_dssp HHHHH-
T ss_pred HHHHHc
Confidence 777665
No 77
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=53.15 E-value=43 Score=27.93 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=36.2
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHcCCCcEEEccCCCCCh-------HHHhhCCCCCCC
Q 020170 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGAEGP-------RGWMNSGLPWIP 256 (330)
Q Consensus 207 k~IVv~C~sG-~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~-------~aW~~aGLPv~~ 256 (330)
+.|+++|... .||..|...+++.+-.++.+...|+.+. ...++.|+++..
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~~~~~p~a~~~l~e~Gid~~~ 58 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEVSRVHPTAIEVMSEIGIDISG 58 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCCCCCCHHHHHHHHHhCCCccc
Confidence 3689999644 6899999999887655677777887532 556667887643
No 78
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=53.08 E-value=41 Score=32.14 Aligned_cols=70 Identities=13% Similarity=0.192 Sum_probs=39.5
Q ss_pred CCcEEEEeCC----hhhhhhcCCCCCCCCCCCcEEeccCCCCCc--c----hHHHhhhhcCCCCCCeEEEEeCCC-chHH
Q 020170 152 ASAQLLDIRA----PVEFRQVGSPDVRGLGKRPVSIVYKGDDKP--G----FLKKLSLKFKEPENTTLFILDKFD-GNSE 220 (330)
Q Consensus 152 ~~avLIDVR~----~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~--~----fl~~L~~~~~~~kdk~IVv~C~sG-~RS~ 220 (330)
.=..+|++.+ +++++..|+ .-.++|+.+-..| + |++-+... ...+.+|+|.|..| +||.
T Consensus 116 gV~~lVrlcE~~Yd~~~~~~~GI--------~~~~lpipDg~aPs~~~i~~~l~~i~~~--l~~g~~VaVHC~AGlGRTG 185 (241)
T PTZ00393 116 NVTDLVRTCERTYNDGEITSAGI--------NVHELIFPDGDAPTVDIVSNWLTIVNNV--IKNNRAVAVHCVAGLGRAP 185 (241)
T ss_pred CCCEEEECCCCCCCHHHHHHcCC--------eEEEeecCCCCCCCHHHHHHHHHHHHHH--HhcCCeEEEECCCCCCHHH
Confidence 3455777654 345555343 3566776653222 2 23323222 23567899999999 4655
Q ss_pred H-HHHHHHHcCC
Q 020170 221 L-VAELVTINGF 231 (330)
Q Consensus 221 ~-AA~~L~~~Gf 231 (330)
. +|..|.+.|+
T Consensus 186 tl~AayLI~~Gm 197 (241)
T PTZ00393 186 VLASIVLIEFGM 197 (241)
T ss_pred HHHHHHHHHcCC
Confidence 5 6667766665
No 79
>PRK12361 hypothetical protein; Provisional
Probab=50.91 E-value=57 Score=34.12 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=42.6
Q ss_pred cCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhc-----CCCCCCeEEEEe
Q 020170 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKF-----KEPENTTLFILD 213 (330)
Q Consensus 139 Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~-----~~~kdk~IVv~C 213 (330)
.++.+...+.+ ..-..+||+|.+.+........ ....-.++|..+...+. .+++.+.+ ...++++|+|.|
T Consensus 108 ~~a~d~~~L~~-~gI~~Vldlt~E~~~~~~~~~~---~~i~yl~iPi~D~~~p~-~~~l~~a~~~i~~~~~~~~~VlVHC 182 (547)
T PRK12361 108 LFPADLEKLKS-NKITAILDVTAEFDGLDWSLTE---EDIDYLNIPILDHSVPT-LAQLNQAINWIHRQVRANKSVVVHC 182 (547)
T ss_pred CCcccHHHHHH-cCCCEEEEcccccccccccccc---cCceEEEeecCCCCCCc-HHHHHHHHHHHHHHHHCCCeEEEEC
Confidence 44566555543 4456789999543221000000 00146788976533221 12222111 023468999999
Q ss_pred CCCc-hHHH-HHHHHH
Q 020170 214 KFDG-NSEL-VAELVT 227 (330)
Q Consensus 214 ~sG~-RS~~-AA~~L~ 227 (330)
..|. ||.. ++.+|.
T Consensus 183 ~~G~sRSa~vv~ayLm 198 (547)
T PRK12361 183 ALGRGRSVLVLAAYLL 198 (547)
T ss_pred CCCCCcHHHHHHHHHH
Confidence 9994 5655 445554
No 80
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=48.95 E-value=58 Score=33.98 Aligned_cols=88 Identities=19% Similarity=0.268 Sum_probs=64.8
Q ss_pred CCCeEEEEeCC---CchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCCCCCCCcccCcchhhHHHhhhhccCCc
Q 020170 205 ENTTLFILDKF---DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSE 281 (330)
Q Consensus 205 kdk~IVv~C~s---G~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~~~kk~~~ldl~r~~~~i~~~~~~~~~ 281 (330)
++|.|+++++| |..|.+..+.|+++|-++||+-.+ -|-.+..--|-+|.....|+|+.-. .
T Consensus 347 ~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvria------------sP~i~~Pc~YGID~pt~~eLIA~~~----~ 410 (470)
T COG0034 347 KGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIA------------SPPIRYPCFYGIDMPTREELIAANR----T 410 (470)
T ss_pred CCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEec------------CCCccCCCccccCCCCHHHHhhCCC----C
Confidence 58999999997 788999999999999999987543 1333333456677667777775421 1
Q ss_pred chhHHHHHHHHhhhhhHHHHhHHHHHHHHHH
Q 020170 282 GFSVTLAIAAAAGLGVLAFSEIETILQILGS 312 (330)
Q Consensus 282 ~~p~~~~~aa~~g~Gl~~~~e~e~~lq~~g~ 312 (330)
..-++..+|+=-++|.-+|-+.+-+|-
T Consensus 411 ----~eeI~~~IgaDSL~yLslegL~~aig~ 437 (470)
T COG0034 411 ----VEEIRKAIGADSLAYLSLEGLIKAIGR 437 (470)
T ss_pred ----HHHHHHHhCCCceeeecHHHHHHHhCC
Confidence 334677788888888888888887773
No 81
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=47.98 E-value=9.1 Score=34.07 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=38.0
Q ss_pred HHhhhhcHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCHHHH-HHHhcCCCCcEEEEeCChhhhhhcCCCCCC
Q 020170 103 ISFGTENPLAIAGGVTILAVPLVLSQVLNKPKSWGVESARNA-YAKLGDDASAQLLDIRAPVEFRQVGSPDVR 174 (330)
Q Consensus 103 ~~F~~~npvlva~~v~~~~l~~v~~~~~~~~~~~g~Is~~ea-~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~ 174 (330)
.+|+.+||-|.+++.+.++..+++. +..-+-+++.+-.-.+ .-.++ .+.+.||++..-|+.-|..|+|
T Consensus 29 ~~Fi~~HP~L~~~M~~~y~~~~~lm-~~spy~G~~s~~~ftv~fv~m~---~~llfDI~P~YrfEDIdvLDLR 97 (155)
T PF10777_consen 29 SSFIRNHPYLCLAMYAAYLAVAALM-YYSPYFGLGSVWGFTVFFVVMA---AFLLFDIKPRYRFEDIDVLDLR 97 (155)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHH-HhcchhhhHHHHHHHHHHHHHH---HHHHhhccceeeecccCeeEEe
Confidence 4799999999988766533211110 1111111222222222 22233 5788999999999876777654
No 82
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=47.98 E-value=23 Score=28.61 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=20.8
Q ss_pred CCeEEEEeCCCchHHHHHHHHH----HcCCC
Q 020170 206 NTTLFILDKFDGNSELVAELVT----INGFK 232 (330)
Q Consensus 206 dk~IVv~C~sG~RS~~AA~~L~----~~Gf~ 232 (330)
.++|+++|.+|..|..+++.++ +.|++
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~ 33 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP 33 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc
Confidence 4789999999988877777665 45663
No 83
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=41.99 E-value=5.7 Score=42.39 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=51.7
Q ss_pred ccCHHHHHHHhcCCCCcEEEEeCChhhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhh--hcCCCCCCeEEEEeCC
Q 020170 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL--KFKEPENTTLFILDKF 215 (330)
Q Consensus 138 ~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~--~~~~~kdk~IVv~C~s 215 (330)
+|++++...+ +...++|.|...||.. +|. .+++|+|+.. . +.-++.+.. .....+.+.++++-..
T Consensus 623 rmsAedl~~~----~~l~v~d~r~~~ef~r-~~~------s~s~nip~~~-~-ea~l~~~~~l~~~~~~~~~~~v~~~~~ 689 (725)
T KOG1093|consen 623 RISAEDLIWL----KMLYVLDTRQESEFQR-EHF------SDSINIPFNN-H-EADLDWLRFLPGIVCSEGKKCVVVGKN 689 (725)
T ss_pred cccHHHHHHH----HHHHHHhHHHHHHHHH-hhc------cccccCCccc-h-HHHHHHhhcchHhHHhhCCeEEEeccc
Confidence 3555554433 4678999999999997 554 3899999872 1 111111110 0001234555555554
Q ss_pred CchHHHHHHHHHHcCCCcEEEccCCCC
Q 020170 216 DGNSELVAELVTINGFKNAYTIKDGAE 242 (330)
Q Consensus 216 G~RS~~AA~~L~~~Gf~~Vy~L~GGi~ 242 (330)
...+......+..+-|.+.-.+.+|+.
T Consensus 690 ~K~~~e~~~~~~~mk~p~~cil~~~~~ 716 (725)
T KOG1093|consen 690 DKHAAERLTELYVMKVPRICILHDGFN 716 (725)
T ss_pred hHHHHHHhhHHHHhcccHHHHHHHHHh
Confidence 444555555555555665556667663
No 84
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=41.59 E-value=35 Score=36.44 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=37.1
Q ss_pred HHHhhhhcCCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEccCCC
Q 020170 194 LKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (330)
Q Consensus 194 l~~L~~~~~~~kdk~IVv~C~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi 241 (330)
.++|.+.+...-+.|+|++.+.-..+...|+.|.++|| +++.|-||=
T Consensus 505 ~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 505 RKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred HHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence 34444444334578999999988899999999999998 799999985
No 85
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=41.10 E-value=50 Score=26.62 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=27.8
Q ss_pred chHHHhhhhcCCCCCCeEEEEeCCCchH-HHHHHHHHHcCCC
Q 020170 192 GFLKKLSLKFKEPENTTLFILDKFDGNS-ELVAELVTINGFK 232 (330)
Q Consensus 192 ~fl~~L~~~~~~~kdk~IVv~C~sG~RS-~~AA~~L~~~Gf~ 232 (330)
++++.+++ ++++++++-+++.++ ...++.|+++||.
T Consensus 21 e~l~~L~~-----~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 21 EALDALRE-----RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHH-----TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHH-----cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 46666653 479999999999888 6789999999995
No 86
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=40.62 E-value=67 Score=31.54 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=45.3
Q ss_pred ccCHHHHHHHhcCCCCcEEEEeCChhhhhhc--CCCCCCCCCCCcEEeccCCCCCcchHHHhhhhc-CCCCCCeEEEEeC
Q 020170 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQV--GSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKF-KEPENTTLFILDK 214 (330)
Q Consensus 138 ~Is~~ea~~ll~~~~~avLIDVR~~~Ef~~~--Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~-~~~kdk~IVv~C~ 214 (330)
.+...++.+.+. +.++++||+|+..+|... ||+.+ +. -| + ...|...|...+ +.+.+++|++-|.
T Consensus 137 g~gKt~Ll~~L~-~~~~~VvDlr~~a~hrGs~fG~~~~-----~~--qp-s---q~~fe~~L~~~l~~~~~~~~i~~e~e 204 (311)
T TIGR03167 137 GSGKTELLHALA-NAGAQVLDLEGLANHRGSSFGALGL-----GP--QP-S---QKRFENALAEALRRLDPGRPIFVEDE 204 (311)
T ss_pred CcCHHHHHHHHh-cCCCeEEECCchHHhcCcccCCCCC-----CC--CC-c---hHHHHHHHHHHHHhCCCCceEEEEeC
Confidence 477788888886 567899999999999831 34410 10 11 1 124555554333 2466789999999
Q ss_pred CCchHHH
Q 020170 215 FDGNSEL 221 (330)
Q Consensus 215 sG~RS~~ 221 (330)
+......
T Consensus 205 s~~ig~~ 211 (311)
T TIGR03167 205 SRRIGRV 211 (311)
T ss_pred chhhccc
Confidence 8754433
No 87
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=40.26 E-value=47 Score=30.23 Aligned_cols=82 Identities=22% Similarity=0.245 Sum_probs=42.7
Q ss_pred CCCcccCHHHHHHHhcCCCCcEEEEeCCh---hhhhhcCCCCCCCCCCCcEEeccCCCCCcchHHHhhhhcCCCCCCeEE
Q 020170 134 KSWGVESARNAYAKLGDDASAQLLDIRAP---VEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLF 210 (330)
Q Consensus 134 ~~~g~Is~~ea~~ll~~~~~avLIDVR~~---~Ef~~~Ghp~l~~~~~gAinIPl~~~~~~~fl~~L~~~~~~~kdk~IV 210 (330)
.+-+.+.++-+.-+-.-+.+..++|+=.- ++|.. .+ ..|++.+++ .++++||+
T Consensus 42 sG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~--------------~~-------~~fv~~iR~---~hP~tPIl 97 (178)
T PF14606_consen 42 SGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRE--------------RL-------DGFVKTIRE---AHPDTPIL 97 (178)
T ss_dssp TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHH--------------HH-------HHHHHHHHT---T-SSS-EE
T ss_pred cCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHH--------------HH-------HHHHHHHHH---hCCCCCEE
Confidence 34455666654433333568889997533 22221 00 146677764 46789999
Q ss_pred EEeCCCc------------------hHHHHHHHHHHcCCCcEEEccC
Q 020170 211 ILDKFDG------------------NSELVAELVTINGFKNAYTIKD 239 (330)
Q Consensus 211 v~C~sG~------------------RS~~AA~~L~~~Gf~~Vy~L~G 239 (330)
++-.... --..+.+.|++.|.+|+|.+.|
T Consensus 98 lv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g 144 (178)
T PF14606_consen 98 LVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDG 144 (178)
T ss_dssp EEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-H
T ss_pred EEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCc
Confidence 9873321 1233667788889999999976
No 88
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=39.27 E-value=43 Score=28.03 Aligned_cols=34 Identities=9% Similarity=-0.026 Sum_probs=26.0
Q ss_pred EEEEeCCC-chHHHHHHHHHHcCCCcEEEccCCCC
Q 020170 209 LFILDKFD-GNSELVAELVTINGFKNAYTIKDGAE 242 (330)
Q Consensus 209 IVv~C~sG-~RS~~AA~~L~~~Gf~~Vy~L~GGi~ 242 (330)
|+++|... .||..|...+++..=.++.+...|+.
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~ 35 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTG 35 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCccc
Confidence 57899644 58999999998765345778888886
No 89
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=38.88 E-value=41 Score=29.68 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=33.4
Q ss_pred CCCCCeEEEEeCCCch---HHHHHHHHHHcCCCcEEE--ccCCCCCh-------HHHhhCCCCCCCC
Q 020170 203 EPENTTLFILDKFDGN---SELVAELVTINGFKNAYT--IKDGAEGP-------RGWMNSGLPWIPP 257 (330)
Q Consensus 203 ~~kdk~IVv~C~sG~R---S~~AA~~L~~~Gf~~Vy~--L~GGi~g~-------~aW~~aGLPv~~~ 257 (330)
.++.++|+++|-.|++ ...+|+.|.+.||+ |.+ +...-... +-+++.|.++...
T Consensus 22 ~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 22 SPKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTVYLVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEEEEEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEEEEEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 3678999999999865 56699999999996 444 32211111 4455667666543
No 90
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=38.40 E-value=34 Score=25.04 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=15.7
Q ss_pred eEEEEeCCC-chHHHHHHHHHH
Q 020170 208 TLFILDKFD-GNSELVAELVTI 228 (330)
Q Consensus 208 ~IVv~C~sG-~RS~~AA~~L~~ 228 (330)
.++++|.+| ..|..+++.|++
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~ 22 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEK 22 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHH
Confidence 378999999 567777776654
No 91
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=38.28 E-value=39 Score=29.94 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=17.7
Q ss_pred CCCCCeEEEEeCCCc-hHHHHHHHHHH
Q 020170 203 EPENTTLFILDKFDG-NSELVAELVTI 228 (330)
Q Consensus 203 ~~kdk~IVv~C~sG~-RS~~AA~~L~~ 228 (330)
.+++.||++.|.+|. |...+...|++
T Consensus 88 d~~n~PvLiHC~~G~~rTG~vvg~lRk 114 (164)
T PF03162_consen 88 DPRNYPVLIHCNHGKDRTGLVVGCLRK 114 (164)
T ss_dssp -GGG-SEEEE-SSSSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCcchhhHHHHHHH
Confidence 356789999999995 67777766765
No 92
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=37.97 E-value=36 Score=28.10 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=20.3
Q ss_pred CeEEEEeCCCchHHHHHHHHH----HcCCC
Q 020170 207 TTLFILDKFDGNSELVAELVT----INGFK 232 (330)
Q Consensus 207 k~IVv~C~sG~RS~~AA~~L~----~~Gf~ 232 (330)
++|+++|.+|..|..+++.++ +.|++
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~ 31 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD 31 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc
Confidence 469999999998888887775 45663
No 93
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=36.52 E-value=38 Score=27.78 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=23.0
Q ss_pred eEEEEeCCCchHHHHHHHHH----HcCCCcEEEccCCC
Q 020170 208 TLFILDKFDGNSELVAELVT----INGFKNAYTIKDGA 241 (330)
Q Consensus 208 ~IVv~C~sG~RS~~AA~~L~----~~Gf~~Vy~L~GGi 241 (330)
+|++.|.+|..|..+++.++ +.|+. +.....+.
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~ 38 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAY 38 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeH
Confidence 48999999988888888775 45763 44444443
No 94
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=36.14 E-value=44 Score=27.53 Aligned_cols=22 Identities=5% Similarity=0.191 Sum_probs=18.1
Q ss_pred CCeEEEEeCCCchHHHHHHHHH
Q 020170 206 NTTLFILDKFDGNSELVAELVT 227 (330)
Q Consensus 206 dk~IVv~C~sG~RS~~AA~~L~ 227 (330)
.++|+++|..|..|...++.++
T Consensus 3 ~kkIllvC~~G~sTSll~~km~ 24 (106)
T PRK10499 3 KKHIYLFCSAGMSTSLLVSKMR 24 (106)
T ss_pred CCEEEEECCCCccHHHHHHHHH
Confidence 3589999999999888886654
No 95
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=34.74 E-value=90 Score=29.01 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=23.1
Q ss_pred CCeEEEEeCCCch---HHHHHHHHHHcCCC
Q 020170 206 NTTLFILDKFDGN---SELVAELVTINGFK 232 (330)
Q Consensus 206 dk~IVv~C~sG~R---S~~AA~~L~~~Gf~ 232 (330)
..+|+++|-.|++ ...||+.|...||.
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~ 78 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA 78 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc
Confidence 6789999988764 77799999999975
No 96
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=34.63 E-value=55 Score=30.36 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=23.8
Q ss_pred eEEEEeCCC-chHHHHHHHHHHcCCCcEEEc
Q 020170 208 TLFILDKFD-GNSELVAELVTINGFKNAYTI 237 (330)
Q Consensus 208 ~IVv~C~sG-~RS~~AA~~L~~~Gf~~Vy~L 237 (330)
.+-++|.+- +||..|-..|+++|| +|...
T Consensus 3 ~~avVCasN~NRSMEAH~~L~~~G~-~V~Sf 32 (195)
T PF04722_consen 3 RFAVVCASNQNRSMEAHNVLKKAGF-NVRSF 32 (195)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEccCCCCcCHHHHHHHHHCCC-ceEee
Confidence 578999987 689999999999999 56555
No 97
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=34.00 E-value=1e+02 Score=32.18 Aligned_cols=87 Identities=18% Similarity=0.329 Sum_probs=57.2
Q ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCCCCCCCcccCcchhhHHHhhhhccCCc
Q 020170 205 ENTTLFILDK---FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSE 281 (330)
Q Consensus 205 kdk~IVv~C~---sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~~~kk~~~ldl~r~~~~i~~~~~~~~~ 281 (330)
+++.|+++++ +|.....+++.|+++|-++|+...-. -|+..| =-|-+|.....|+|+.-.-
T Consensus 357 ~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~a-----------p~i~~p-c~ygid~~~~~eLia~~~~---- 420 (501)
T PRK09246 357 KGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAA-----------PPVRFP-NVYGIDMPTANELIAHGRT---- 420 (501)
T ss_pred cCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEc-----------cccccC-cccccCCCCHHHHhhcCCC----
Confidence 5789999987 58889999999999999999876432 234433 3455666666666643210
Q ss_pred chhHHHHHHHHhhhhhHHHHhHHHHHHHHH
Q 020170 282 GFSVTLAIAAAAGLGVLAFSEIETILQILG 311 (330)
Q Consensus 282 ~~p~~~~~aa~~g~Gl~~~~e~e~~lq~~g 311 (330)
.--++-.+|+=-+.|..+|.+.+.+|
T Consensus 421 ----~e~i~~~ig~dsl~yls~~~l~~a~~ 446 (501)
T PRK09246 421 ----VEEIRQIIGADGLIYQDLEDLIEAVR 446 (501)
T ss_pred ----HHHHHHHhCCCeEeecCHHHHHHHhc
Confidence 13345555666666666666666665
No 98
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.73 E-value=49 Score=30.64 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=23.2
Q ss_pred cccCHHHHHHHhcCCCCcEEEEeCChhhhh
Q 020170 137 GVESARNAYAKLGDDASAQLLDIRAPVEFR 166 (330)
Q Consensus 137 g~Is~~ea~~ll~~~~~avLIDVR~~~Ef~ 166 (330)
..|+.+|+.+.+. .++-+|||.+|.|=.
T Consensus 6 SPin~eEA~eAie--GGAdIiDVKNP~EGS 33 (235)
T COG1891 6 SPINREEAIEAIE--GGADIIDVKNPAEGS 33 (235)
T ss_pred ccCCHHHHHHHhh--CCCceEeccCcccCc
Confidence 3588899999985 588999999998754
No 99
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=33.09 E-value=55 Score=25.05 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=16.8
Q ss_pred eEEEEeCCCchHHH-HHHHH----HHcCCC
Q 020170 208 TLFILDKFDGNSEL-VAELV----TINGFK 232 (330)
Q Consensus 208 ~IVv~C~sG~RS~~-AA~~L----~~~Gf~ 232 (330)
+|+++|.+|..+.. +++.+ .+.|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 48999999965444 43555 556764
No 100
>PF08997 UCR_6-4kD: Ubiquinol-cytochrome C reductase complex, 6.4kD protein; InterPro: IPR015089 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4 kDa protein, which may be closely linked to the iron-sulphur protein in the complex and function as an iron-sulphur protein-binding factor []. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0009055 electron carrier activity; PDB: 1NTM_K 1SQV_K 1SQB_K 1NU1_K 1SQQ_K 1BE3_K 1BGY_W 2YBB_k 2FYU_K 1L0N_K ....
Probab=33.02 E-value=45 Score=24.94 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=24.3
Q ss_pred cchhHHHHHHHHhhhhhHHHHhHHHHHHH
Q 020170 281 EGFSVTLAIAAAAGLGVLAFSEIETILQI 309 (330)
Q Consensus 281 ~~~p~~~~~aa~~g~Gl~~~~e~e~~lq~ 309 (330)
..+|-....+++.|.+++-++||..+||-
T Consensus 16 ~w~ps~~~~G~~~~l~lvy~TDWklIl~y 44 (56)
T PF08997_consen 16 NWIPSAAAWGAAGGLALVYFTDWKLILQY 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHTT
T ss_pred HhchhHHHHhhhhhhheeeecchHhhhhh
Confidence 44576777788999999999999999984
No 101
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=32.53 E-value=1.2e+02 Score=25.65 Aligned_cols=47 Identities=11% Similarity=0.023 Sum_probs=32.2
Q ss_pred EEEEeCCC-chHHHHHHHHHHcCCCcEEEccCCCCCh-------HHHhhCCCCCC
Q 020170 209 LFILDKFD-GNSELVAELVTINGFKNAYTIKDGAEGP-------RGWMNSGLPWI 255 (330)
Q Consensus 209 IVv~C~sG-~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~-------~aW~~aGLPv~ 255 (330)
|+++|... .||..|...+++..=.++.+...|+.+. ..-++.|+++.
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~~~~~~~~~a~~~l~e~Gid~~ 55 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGIEAHGLNPNAVKAMKEVGIDIS 55 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCHHHHHHHHHcCCCcC
Confidence 57899644 5888888888875335677788887532 34455677764
No 102
>PRK13530 arsenate reductase; Provisional
Probab=32.39 E-value=84 Score=26.66 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=33.9
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHcCCCcEEEccCCCCCh-------HHHhhCCCCCC
Q 020170 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGAEGP-------RGWMNSGLPWI 255 (330)
Q Consensus 207 k~IVv~C~sG-~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~-------~aW~~aGLPv~ 255 (330)
+.|+++|... .||..|...+++..=.++.+...|+... ..-++.|+++.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~~~~~~~~a~~~l~e~Gi~~~ 60 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIEAHGVNPNAIKAMKEVGIDIS 60 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCCCCCCCHHHHHHHHHcCCCcC
Confidence 5799999744 5899998888875434677778887522 34445677764
No 103
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=32.06 E-value=48 Score=26.60 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=22.3
Q ss_pred eEEEEeCCCchHHHHHHHHH----HcCCCcEEEccCCC
Q 020170 208 TLFILDKFDGNSELVAELVT----INGFKNAYTIKDGA 241 (330)
Q Consensus 208 ~IVv~C~sG~RS~~AA~~L~----~~Gf~~Vy~L~GGi 241 (330)
+|+++|.+|..|..+++.++ +.|+. +.+-..++
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~ 37 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPE 37 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecH
Confidence 38999999998877777665 45764 33333444
No 104
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=31.72 E-value=49 Score=32.73 Aligned_cols=36 Identities=17% Similarity=-0.030 Sum_probs=27.9
Q ss_pred CcccCHHHHHHHhc-C----CCCcEEEEeCChhhhhhcCCCC
Q 020170 136 WGVESARNAYAKLG-D----DASAQLLDIRAPVEFRQVGSPD 172 (330)
Q Consensus 136 ~g~Is~~ea~~ll~-~----~~~avLIDVR~~~Ef~~~Ghp~ 172 (330)
...+++++..+++. . +.+..+||||++. |+....+|
T Consensus 276 ~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~ 316 (339)
T PRK07688 276 KEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKD 316 (339)
T ss_pred cCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcC
Confidence 35699999998883 1 3588999999999 98755554
No 105
>PRK10126 tyrosine phosphatase; Provisional
Probab=31.66 E-value=70 Score=27.44 Aligned_cols=35 Identities=9% Similarity=0.015 Sum_probs=26.2
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHcCCCcEEEccCCCC
Q 020170 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGAE 242 (330)
Q Consensus 207 k~IVv~C~sG-~RS~~AA~~L~~~Gf~~Vy~L~GGi~ 242 (330)
+.|+++|... .||..|...+++.+ .++.+-..|..
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~ 38 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLG 38 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeecc
Confidence 5799999744 58999999998875 34556667775
No 106
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=31.62 E-value=46 Score=35.25 Aligned_cols=104 Identities=9% Similarity=-0.013 Sum_probs=58.0
Q ss_pred hhhchheecccccchhhccccHHHHHHhhhcCCCCCCChhHHHHHHHHhhhh----cHHHHHHHHHHHHHH--------H
Q 020170 57 VHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTE----NPLAIAGGVTILAVP--------L 124 (330)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~F~~~----npvlva~~v~~~~l~--------~ 124 (330)
..|||||+.||++..+-+|-.+.|.+-+-+...+ |=.-.+.+.+|..+ |-=.+..++-++..- +
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~f~~k~~~~l~~~p----l~~~~~~vq~~~~~~~~~~~~~l~~fl~~l~~~~~~~~~~~~ 91 (535)
T PRK15375 16 NDARLYIAKENTDKAYVAPEKFSSKVLTWLGKMP----LFKNTEVVQKHTENIRVQDQKILQTFLQALTEKYGETAVNDA 91 (535)
T ss_pred cCceEEEeeCCCCeEEEchhhHHHHHHHHHhcCc----cccchHHHHHHHhccccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3899999999999999999999999999887553 21112333333332 111111111111111 1
Q ss_pred HHHHHhcCCCCCcccCHHHHHHHhcCCCCcEEEEeCChhh
Q 020170 125 VLSQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVE 164 (330)
Q Consensus 125 v~~~~~~~~~~~g~Is~~ea~~ll~~~~~avLIDVR~~~E 164 (330)
+..--++..+++.....+++.+++.+.++...=|||+.+.
T Consensus 92 ~~~~~~~~~~p~t~~~~~q~t~~~~~~~~~~~~~~~~~~~ 131 (535)
T PRK15375 92 LLMSRINMNKPLTQRLAVQITECVKAADEGFINLIKSKDN 131 (535)
T ss_pred HHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 1111223444454555667777775444555667776654
No 107
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=31.14 E-value=66 Score=27.06 Aligned_cols=35 Identities=9% Similarity=0.031 Sum_probs=27.3
Q ss_pred eEEEEeCCC-chHHHHHHHHHHcCCC-cEEEccCCCC
Q 020170 208 TLFILDKFD-GNSELVAELVTINGFK-NAYTIKDGAE 242 (330)
Q Consensus 208 ~IVv~C~sG-~RS~~AA~~L~~~Gf~-~Vy~L~GGi~ 242 (330)
.|+++|... .||..|...+++..-+ ++.+...|+.
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~ 38 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTS 38 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCC
Confidence 689999754 5899999999876533 6778888885
No 108
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=31.05 E-value=83 Score=33.52 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=31.4
Q ss_pred CCeEEEEeCCCch---HHHHHHHHHHcCCCcEEEc-cCCCCCh------HHHhhCCCCC
Q 020170 206 NTTLFILDKFDGN---SELVAELVTINGFKNAYTI-KDGAEGP------RGWMNSGLPW 254 (330)
Q Consensus 206 dk~IVv~C~sG~R---S~~AA~~L~~~Gf~~Vy~L-~GGi~g~------~aW~~aGLPv 254 (330)
.++|+|+|-.|++ ...+|+.|...||+ |.++ .+..... +.|+..|.++
T Consensus 135 ~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 135 YSRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred CCEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 3689999988865 56699999999996 3333 2322211 3466666654
No 109
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=30.96 E-value=69 Score=30.34 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=22.6
Q ss_pred CCeEEEEeCCCc---hHHHHHHHHHHcCCC
Q 020170 206 NTTLFILDKFDG---NSELVAELVTINGFK 232 (330)
Q Consensus 206 dk~IVv~C~sG~---RS~~AA~~L~~~Gf~ 232 (330)
.++|+++|-.|+ ....+|+.|...||+
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~~ 89 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGYE 89 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCCe
Confidence 368999998765 577799999999995
No 110
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=30.49 E-value=69 Score=28.61 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=28.5
Q ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCCcEEEc
Q 020170 205 ENTTLFILDK---FDGNSELVAELVTINGFKNAYTI 237 (330)
Q Consensus 205 kdk~IVv~C~---sG~RS~~AA~~L~~~Gf~~Vy~L 237 (330)
+++.|+++++ +|..-..+++.|.++|-+.|+.+
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 4678999886 78899999999999999988865
No 111
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=29.32 E-value=1.8e+02 Score=30.32 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=63.7
Q ss_pred CCCCeEEEEeC---CCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCCCCCCCcccCcchhhHHHhhhhccCC
Q 020170 204 PENTTLFILDK---FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGS 280 (330)
Q Consensus 204 ~kdk~IVv~C~---sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~~~kk~~~ldl~r~~~~i~~~~~~~~ 280 (330)
-+++.|+++++ +|..+..+++.|+++|-++|++... .=|+..| =-|-+|+....++|+.-.-
T Consensus 346 i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~-----------sPpi~~p-c~yGid~~~~~elia~~~~--- 410 (471)
T PRK06781 346 VEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIA-----------SPPLKYP-CFYGIDIQTRKELIAANHT--- 410 (471)
T ss_pred cCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEEC-----------CCCccCC-cccccCCCCHHHHHhcCCC---
Confidence 35789999987 5888999999999999999986543 1244444 3466777788877754211
Q ss_pred cchhHHHHHHHHhhhhhHHHHhHHHHHHHHH
Q 020170 281 EGFSVTLAIAAAAGLGVLAFSEIETILQILG 311 (330)
Q Consensus 281 ~~~p~~~~~aa~~g~Gl~~~~e~e~~lq~~g 311 (330)
.-.+.-.+|+=-+.|.-+|-+++-+|
T Consensus 411 -----~eei~~~igadsl~yls~e~l~~a~~ 436 (471)
T PRK06781 411 -----VEEIREMIGADSLTFLSEDGLVDAIG 436 (471)
T ss_pred -----HHHHHHHhCCCEEeccCHHHHHHHhc
Confidence 24566777777778888888888876
No 112
>PF07098 DUF1360: Protein of unknown function (DUF1360); InterPro: IPR010773 This entry is represented by Mycobacterium phage PG1, Gp7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 115 residues in length. Members of this family are found in Bacillus species and Streptomyces coelicolor, the function of the family is unknown.
Probab=28.73 E-value=1.2e+02 Score=25.31 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=30.3
Q ss_pred hHHHHHHHHhhhhhHHHHhH----HHHHHHHHHHHHHHHHHhh
Q 020170 284 SVTLAIAAAAGLGVLAFSEI----ETILQILGSAALVQFASKK 322 (330)
Q Consensus 284 p~~~~~aa~~g~Gl~~~~e~----e~~lq~~g~~~~~~~~~~~ 322 (330)
=.-.|+|++..+|++..-.+ =.+|=+.|.+++.|+++.|
T Consensus 63 C~gvWvA~~~~~~~v~~P~~~~~~~~~laia~~a~~le~~~~r 105 (105)
T PF07098_consen 63 CTGVWVAAGLAAGYVFAPRVTRPLILILAIAGAADILETAYSR 105 (105)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33588999999998887664 3567778899999998865
No 113
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=28.32 E-value=77 Score=24.98 Aligned_cols=34 Identities=15% Similarity=0.460 Sum_probs=24.7
Q ss_pred CChhHHHHHHHHhhhhcHHHHHHHHHHHHHHHHH
Q 020170 93 VDASGFIDSVISFGTENPLAIAGGVTILAVPLVL 126 (330)
Q Consensus 93 ~~~~~~~~~l~~F~~~npvlva~~v~~~~l~~v~ 126 (330)
+|..+-.+.++.|+++||.=+...+.+++.|+++
T Consensus 2 ~D~k~w~~~~v~~vAkdP~~Fl~~vll~LtPlfi 35 (74)
T PF15086_consen 2 IDVKAWASYIVEWVAKDPYEFLTTVLLILTPLFI 35 (74)
T ss_pred cchHHHHHHHHHHHHcChHHHHHHHHHHHhHHHH
Confidence 4566667788999999998666656555557654
No 114
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=27.29 E-value=72 Score=25.55 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=17.4
Q ss_pred eEEEEeCCCch-HHHHHHH----HHHcCCC
Q 020170 208 TLFILDKFDGN-SELVAEL----VTINGFK 232 (330)
Q Consensus 208 ~IVv~C~sG~R-S~~AA~~----L~~~Gf~ 232 (330)
+|+++|.+|.- |..++.. +.+.|+.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~ 33 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP 33 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe
Confidence 69999999984 4444444 4567774
No 115
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=26.16 E-value=1.1e+02 Score=26.22 Aligned_cols=35 Identities=9% Similarity=0.074 Sum_probs=25.6
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHcCCCcEEEccCCCC
Q 020170 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGAE 242 (330)
Q Consensus 207 k~IVv~C~sG-~RS~~AA~~L~~~Gf~~Vy~L~GGi~ 242 (330)
+.|+++|... .||..|...+++.. .++.+-..|..
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~~ 38 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGVH 38 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEccccc
Confidence 4799999643 68999998888764 34556677775
No 116
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=25.69 E-value=1.2e+02 Score=23.87 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=31.1
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEccCCCC
Q 020170 205 ENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAE 242 (330)
Q Consensus 205 kdk~IVv~C~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~ 242 (330)
.+.+++++|.+-......++.|.+.++ +++.+.|++.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ 63 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDGS 63 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCCC
Confidence 467899999998889999999988765 6888888874
No 117
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=25.65 E-value=89 Score=24.34 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=25.4
Q ss_pred CCeEEEEeCCCchHHHHHHHHHHcCCCcEEEccCCC
Q 020170 206 NTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (330)
Q Consensus 206 dk~IVv~C~sG~RS~~AA~~L~~~Gf~~Vy~L~GGi 241 (330)
+.||+++- +.-.......|++.+.+++|.+ ||.
T Consensus 50 ~~PIll~~--~~l~~~~~~~l~~~~~~~v~ii-Gg~ 82 (92)
T PF04122_consen 50 NAPILLVN--NSLPSSVKAFLKSLNIKKVYII-GGE 82 (92)
T ss_pred CCeEEEEC--CCCCHHHHHHHHHcCCCEEEEE-CCC
Confidence 56666655 5556888899999999999988 665
No 118
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=25.22 E-value=74 Score=20.72 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=13.2
Q ss_pred HHHHHHHHhhhhhHHHH
Q 020170 285 VTLAIAAAAGLGVLAFS 301 (330)
Q Consensus 285 ~~~~~aa~~g~Gl~~~~ 301 (330)
+..|++++.++||+++.
T Consensus 3 ~~~wls~a~a~~Lf~YL 19 (29)
T PRK14740 3 VLDWLSLALATGLFVYL 19 (29)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45788888888888764
No 119
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=24.75 E-value=1.5e+02 Score=28.29 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=28.4
Q ss_pred hHHHhhhhcC-CCCCCeEEEEeCCCchHHHHH-----HHHHHcCCCcEEEc
Q 020170 193 FLKKLSLKFK-EPENTTLFILDKFDGNSELVA-----ELVTINGFKNAYTI 237 (330)
Q Consensus 193 fl~~L~~~~~-~~kdk~IVv~C~sG~RS~~AA-----~~L~~~Gf~~Vy~L 237 (330)
+++.++...+ ..++.-+|++|........++ ..|.+.||.+|++.
T Consensus 123 ~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 123 CVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred HHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEE
Confidence 4455554442 457888999997544333332 24578899998864
No 120
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=24.20 E-value=2.1e+02 Score=29.91 Aligned_cols=88 Identities=22% Similarity=0.252 Sum_probs=61.7
Q ss_pred CCCCeEEEEeC---CCchHHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCCCCCCCcccCcchhhHHHhhhhccCC
Q 020170 204 PENTTLFILDK---FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGS 280 (330)
Q Consensus 204 ~kdk~IVv~C~---sG~RS~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~~~kk~~~ldl~r~~~~i~~~~~~~~ 280 (330)
-+++.|+++++ +|..+..+++.|+++|-++|++... .=|+..| --|-+|.....|+|+.-.-
T Consensus 346 v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~-----------sPpi~~p-c~yGid~~~~~eLia~~~~--- 410 (475)
T PRK07631 346 VEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRIS-----------SPPITHP-CFYGIDTSTKEELIASNHS--- 410 (475)
T ss_pred cCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEe-----------CCCccCC-cccCCCCCCHHHHhhcCCC---
Confidence 35789999997 4788899999999999999976532 2244443 3466776677777654210
Q ss_pred cchhHHHHHHHHhhhhhHHHHhHHHHHHHHH
Q 020170 281 EGFSVTLAIAAAAGLGVLAFSEIETILQILG 311 (330)
Q Consensus 281 ~~~p~~~~~aa~~g~Gl~~~~e~e~~lq~~g 311 (330)
.--+.-.+|+=-+.|..+|.+++-+|
T Consensus 411 -----~eei~~~igadsl~yls~e~l~~a~~ 436 (475)
T PRK07631 411 -----VEEIRQLIGADSLAFLSQEGLLEGIG 436 (475)
T ss_pred -----HHHHHHHhCCCeEeccCHHHHHHHhc
Confidence 23455667777778888888888776
No 121
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=23.94 E-value=93 Score=23.92 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=16.6
Q ss_pred CeEEEEeCCCchHH-HHHHHH----HHcCC
Q 020170 207 TTLFILDKFDGNSE-LVAELV----TINGF 231 (330)
Q Consensus 207 k~IVv~C~sG~RS~-~AA~~L----~~~Gf 231 (330)
++++++|.+|..+. ..+..+ .+.++
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~~i 30 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENGI 30 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 36899999998544 555444 44565
No 122
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=23.89 E-value=2.7e+02 Score=22.56 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=23.2
Q ss_pred hHHHhhhhcCCCCCC-eEEEEeCCCchHHH---HHHHHHHcCCCcEEE
Q 020170 193 FLKKLSLKFKEPENT-TLFILDKFDGNSEL---VAELVTINGFKNAYT 236 (330)
Q Consensus 193 fl~~L~~~~~~~kdk-~IVv~C~sG~RS~~---AA~~L~~~Gf~~Vy~ 236 (330)
+.+.+.+....+++. +|++..+...+-.. +...++++|+.++..
T Consensus 78 L~~~l~~~~~~~~~~~~v~i~aD~~~~y~~vv~vl~~l~~~g~~~v~l 125 (130)
T PF02472_consen 78 LEARLKELKQKNPDPVRVLIRADKDAPYQDVVDVLDALREAGFTKVSL 125 (130)
T ss_dssp HHHHHHHHCCC-TTS--EEEEE-TTS-HHHHHHHHHHHHHTT---EE-
T ss_pred HHHHHHHhhccCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 444555443344556 78888887765554 566778899988754
No 123
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=23.71 E-value=4e+02 Score=25.01 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=24.6
Q ss_pred CCeEEEEeCCCchHHH-HHHHHHHcCCCcEEEccCCCC
Q 020170 206 NTTLFILDKFDGNSEL-VAELVTINGFKNAYTIKDGAE 242 (330)
Q Consensus 206 dk~IVv~C~sG~RS~~-AA~~L~~~Gf~~Vy~L~GGi~ 242 (330)
.+.-++||-...++.+ +++...+.||..+ -.|+..
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~~l--d~G~L~ 182 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFRPL--DAGPLE 182 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCccee--eccccc
Confidence 6889999998888777 5555567799643 235554
No 124
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=23.43 E-value=2.8e+02 Score=22.97 Aligned_cols=34 Identities=3% Similarity=0.181 Sum_probs=25.0
Q ss_pred CCCCeEEEEeCCCchHH---HHHHHHHHcCCCcEEEc
Q 020170 204 PENTTLFILDKFDGNSE---LVAELVTINGFKNAYTI 237 (330)
Q Consensus 204 ~kdk~IVv~C~sG~RS~---~AA~~L~~~Gf~~Vy~L 237 (330)
+++.++++-++....-. .+...++++|++++...
T Consensus 82 ~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 82 NKDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQIV 118 (121)
T ss_pred CCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEEE
Confidence 45678999888776444 46677789999988543
No 125
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=23.30 E-value=97 Score=24.08 Aligned_cols=25 Identities=12% Similarity=0.123 Sum_probs=16.1
Q ss_pred CeEEEEeCCCchH-HHHHHHH----HHcCC
Q 020170 207 TTLFILDKFDGNS-ELVAELV----TINGF 231 (330)
Q Consensus 207 k~IVv~C~sG~RS-~~AA~~L----~~~Gf 231 (330)
++|+++|.+|.-+ ..++..+ .+.|.
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~ 30 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGL 30 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 3699999999754 4435444 44555
No 126
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=23.16 E-value=2.1e+02 Score=24.46 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=29.6
Q ss_pred HHhhhhcCCCCCCeEEEEeCCCchHHH---HHHHHHHcCCCcEEEcc
Q 020170 195 KKLSLKFKEPENTTLFILDKFDGNSEL---VAELVTINGFKNAYTIK 238 (330)
Q Consensus 195 ~~L~~~~~~~kdk~IVv~C~sG~RS~~---AA~~L~~~Gf~~Vy~L~ 238 (330)
..+......+++.+|++.++.+..-.. +-..++++|++++-...
T Consensus 88 ~~L~~~~~~~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~v~l~t 134 (141)
T PRK11267 88 TALDALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVG 134 (141)
T ss_pred HHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 344433334567889999988765544 56677899999886543
No 127
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=22.78 E-value=1.8e+02 Score=25.44 Aligned_cols=34 Identities=38% Similarity=0.608 Sum_probs=23.8
Q ss_pred hhHHHHHHHHhhhhhHHHHh---HHHHHHHHHHHHHH
Q 020170 283 FSVTLAIAAAAGLGVLAFSE---IETILQILGSAALV 316 (330)
Q Consensus 283 ~p~~~~~aa~~g~Gl~~~~e---~e~~lq~~g~~~~~ 316 (330)
+|...-++|++|.|.+.=-| +.|+|-+....||.
T Consensus 27 FPAlASLGAAIGLGFLsq~EGLFi~~LlPlFA~iALl 63 (139)
T PRK13755 27 FPALASLGAAIGLGFLSQYEGLFISTLLPLFAAIALL 63 (139)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999875333 44666665555554
No 128
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=22.53 E-value=1.5e+02 Score=29.78 Aligned_cols=58 Identities=16% Similarity=0.293 Sum_probs=41.4
Q ss_pred CCeEEEEeC-CCch---HHHHHHHHHHcCCCcEEEccCCCCChHHHhhCCCCCCCCCCCcccCcc
Q 020170 206 NTTLFILDK-FDGN---SELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLS 266 (330)
Q Consensus 206 dk~IVv~C~-sG~R---S~~AA~~L~~~Gf~~Vy~L~GGi~g~~aW~~aGLPv~~~kk~~~ldl~ 266 (330)
.+|.|++|- +|.. -..+-+.+.++|-++||.++.++. +--.+|+|+..+..+...|++
T Consensus 100 ~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~a---AAIGaglpi~ep~G~mvvDIG 161 (342)
T COG1077 100 PKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMA---AAIGAGLPIMEPTGSMVVDIG 161 (342)
T ss_pred CCCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHH---HHhcCCCcccCCCCCEEEEeC
Confidence 355555554 4443 233556678899999999999997 778899999988766665543
No 129
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=22.30 E-value=92 Score=26.05 Aligned_cols=23 Identities=4% Similarity=0.088 Sum_probs=19.1
Q ss_pred CeEEEEeCCCchHHHHHHHHHHc
Q 020170 207 TTLFILDKFDGNSELVAELVTIN 229 (330)
Q Consensus 207 k~IVv~C~sG~RS~~AA~~L~~~ 229 (330)
++|.++|..|..+...++.++++
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~a 24 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKA 24 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH
Confidence 57999999999988877777664
No 130
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.09 E-value=2.2e+02 Score=24.22 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=31.0
Q ss_pred CCeEEEEeCCCch----HHHHHHHHHHcCCCcEEEccCCCCCh---HHHhhCCCC
Q 020170 206 NTTLFILDKFDGN----SELVAELVTINGFKNAYTIKDGAEGP---RGWMNSGLP 253 (330)
Q Consensus 206 dk~IVv~C~sG~R----S~~AA~~L~~~Gf~~Vy~L~GGi~g~---~aW~~aGLP 253 (330)
+-.+|++|..-.. -....+.|++.|..++.++-||.... ..|++.|..
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd 107 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVA 107 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCC
Confidence 5668888876542 33466777888877777788886433 345555543
No 131
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=21.98 E-value=1.6e+02 Score=23.51 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=27.2
Q ss_pred CCCCeEEEEe---CCCchHHHHHHHHHHcCCCcEEE
Q 020170 204 PENTTLFILD---KFDGNSELVAELVTINGFKNAYT 236 (330)
Q Consensus 204 ~kdk~IVv~C---~sG~RS~~AA~~L~~~Gf~~Vy~ 236 (330)
.+++.+++++ .+|..-..+.+.|++.|.+.|..
T Consensus 86 ~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 86 IKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp GTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred ccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 4578888876 68999999999999999886653
No 132
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=21.69 E-value=2.1e+02 Score=23.25 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=24.3
Q ss_pred hHHHhhhhc-CCCCCCeEEEEeCCCchH--HHHHHHHHHcCCCcEEEccC
Q 020170 193 FLKKLSLKF-KEPENTTLFILDKFDGNS--ELVAELVTINGFKNAYTIKD 239 (330)
Q Consensus 193 fl~~L~~~~-~~~kdk~IVv~C~sG~RS--~~AA~~L~~~Gf~~Vy~L~G 239 (330)
+.+++.+.+ +.+++..++++|+-++-| ..+++.+ ..+++++.+.|
T Consensus 43 ~~~~l~~~i~~~~~~~~vlil~Dl~ggsp~n~a~~~~--~~~~~~~vi~G 90 (116)
T PF03610_consen 43 FEEKLEEAIEELDEGDGVLILTDLGGGSPFNEAARLL--LDKPNIRVISG 90 (116)
T ss_dssp HHHHHHHHHHHCCTTSEEEEEESSTTSHHHHHHHHHH--CTSTTEEEEES
T ss_pred HHHHHHHHHHhccCCCcEEEEeeCCCCccchHHHHHh--ccCCCEEEEec
Confidence 334444333 235678888888866543 3344444 34455666654
No 133
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=21.66 E-value=1.3e+02 Score=26.78 Aligned_cols=28 Identities=18% Similarity=0.282 Sum_probs=18.4
Q ss_pred CCCCeEEEEeCCC-chHHH-HHH-HHHHcCC
Q 020170 204 PENTTLFILDKFD-GNSEL-VAE-LVTINGF 231 (330)
Q Consensus 204 ~kdk~IVv~C~sG-~RS~~-AA~-~L~~~Gf 231 (330)
.+.++|+|.|..| +||.. ++. .|...|.
T Consensus 103 ~~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 103 SKGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 4567999999998 57666 333 4444343
No 134
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=21.43 E-value=47 Score=29.68 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=34.5
Q ss_pred cchhhccc--cHHHHHHhhhcCCCCCCCh-hHHHHHHHHhhhhcHHHHHHHHHHHHHHH
Q 020170 69 GTGLAQAL--TYEEALQQSAGSSASDVDA-SGFIDSVISFGTENPLAIAGGVTILAVPL 124 (330)
Q Consensus 69 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~l~~F~~~npvlva~~v~~~~l~~ 124 (330)
|+.||.-+ -.+|-++|+-+ +-++ |-|...+.+|+.=+|-+-...+.+|++|+
T Consensus 59 nA~IA~DlR~~V~e~l~eGkS----~~qIid~mVaRYG~FVly~Pp~~~~T~lLW~~Pv 113 (153)
T COG3088 59 NAPIARDLRHQVYELLQEGKS----DQQIIDYMVARYGEFVLYKPPLTGQTLLLWGLPV 113 (153)
T ss_pred ccHHHHHHHHHHHHHHHcCCc----HHHHHHHHHHhhcceeeecCCCchhHHHHHHhHH
Confidence 78888766 56777777654 4444 66778999999876655444444454443
No 135
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=21.32 E-value=1.2e+02 Score=26.73 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=30.4
Q ss_pred CCCCeEEEEeCCCc--hHHHHHHHHHH---cCCCcEEEccCCCCCh
Q 020170 204 PENTTLFILDKFDG--NSELVAELVTI---NGFKNAYTIKDGAEGP 244 (330)
Q Consensus 204 ~kdk~IVv~C~sG~--RS~~AA~~L~~---~Gf~~Vy~L~GGi~g~ 244 (330)
+++..+|++|..|. .|...|+.+.+ .|..++..+-||-.|-
T Consensus 65 ~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 65 PPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred cCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 56788999999885 69999999977 6888999999998744
No 136
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=21.27 E-value=1.3e+02 Score=22.75 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=21.6
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHH
Q 020170 204 PENTTLFILDKFDGNSELVAELVTI 228 (330)
Q Consensus 204 ~kdk~IVv~C~sG~RS~~AA~~L~~ 228 (330)
..|.+|+++|+++..+....+++++
T Consensus 45 AgdDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 45 AGDDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp EESSEEEEEESTTSHHHHHHHHHHT
T ss_pred eCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 3478999999999999999888876
No 137
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=21.20 E-value=1.6e+02 Score=24.76 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=27.5
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcc
Q 020170 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIK 238 (330)
Q Consensus 204 ~kdk~IVv~C~sG~RS~~AA~~L~~~Gf~~Vy~L~ 238 (330)
-++++++++-. |+-+..++..|.+.|+++++.+.
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEE
Confidence 35677777764 88999999999999999888763
No 138
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=20.71 E-value=1.1e+02 Score=23.40 Aligned_cols=24 Identities=13% Similarity=0.003 Sum_probs=15.9
Q ss_pred EEEEeCCCch-HHHHHHHH----HHcCCC
Q 020170 209 LFILDKFDGN-SELVAELV----TINGFK 232 (330)
Q Consensus 209 IVv~C~sG~R-S~~AA~~L----~~~Gf~ 232 (330)
++++|.+|.. |......+ .+.|..
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~~i~ 30 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKELGIE 30 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 7899999974 45555444 445654
No 139
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=20.70 E-value=1.3e+02 Score=29.43 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=27.3
Q ss_pred CCCeEEEEe---CCCchHHHHHHHHHHcCCCcEEEc
Q 020170 205 ENTTLFILD---KFDGNSELVAELVTINGFKNAYTI 237 (330)
Q Consensus 205 kdk~IVv~C---~sG~RS~~AA~~L~~~Gf~~Vy~L 237 (330)
+++++++++ .+|..-..+++.|+++|-++||.+
T Consensus 210 ~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~ 245 (301)
T PRK07199 210 AGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCV 245 (301)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 578888875 478888899999999999888755
No 140
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=20.64 E-value=1.8e+02 Score=30.16 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=22.7
Q ss_pred CCeEEEEeCCCch---HHHHHHHHHHcCCC
Q 020170 206 NTTLFILDKFDGN---SELVAELVTINGFK 232 (330)
Q Consensus 206 dk~IVv~C~sG~R---S~~AA~~L~~~Gf~ 232 (330)
.++|+|+|-.|++ ...+|+.|...||+
T Consensus 59 ~~~VlVlcG~GNNGGDGlv~AR~L~~~G~~ 88 (462)
T PLN03049 59 YRRVLALCGPGNNGGDGLVAARHLHHFGYK 88 (462)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCc
Confidence 3689999988865 56699999999996
No 141
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=20.30 E-value=1.6e+02 Score=26.85 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=25.4
Q ss_pred CCCeEEEEeCCCc---hHHHHHHHHHHcCCCcEEEcc
Q 020170 205 ENTTLFILDKFDG---NSELVAELVTINGFKNAYTIK 238 (330)
Q Consensus 205 kdk~IVv~C~sG~---RS~~AA~~L~~~Gf~~Vy~L~ 238 (330)
+.++|+++|-.|+ ....+|+.|.+.|+ +||.+.
T Consensus 44 ~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v-~V~~~~ 79 (205)
T TIGR00197 44 LAGHVIIFCGPGNNGGDGFVVARHLKGFGV-EVFLLK 79 (205)
T ss_pred CCCeEEEEECCCCCccHHHHHHHHHHhCCC-EEEEEc
Confidence 4578999998775 57779999988776 477663
Done!