Query 020171
Match_columns 330
No_of_seqs 299 out of 1567
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:36:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4265 Predicted E3 ubiquitin 100.0 8E-64 1.7E-68 474.4 19.1 243 82-329 101-348 (349)
2 KOG4172 Predicted E3 ubiquitin 99.5 4.2E-15 9.2E-20 105.5 -1.7 53 271-323 7-60 (62)
3 PF13920 zf-C3HC4_3: Zinc fing 99.4 6.8E-14 1.5E-18 99.1 2.9 49 271-319 2-50 (50)
4 KOG4275 Predicted E3 ubiquitin 99.1 5.1E-12 1.1E-16 117.9 -0.9 88 232-324 249-349 (350)
5 KOG0823 Predicted E3 ubiquitin 99.0 2.5E-10 5.4E-15 104.0 5.7 59 268-327 44-107 (230)
6 KOG0317 Predicted E3 ubiquitin 99.0 5.4E-10 1.2E-14 104.6 4.6 50 269-319 237-286 (293)
7 PLN03208 E3 ubiquitin-protein 98.9 9.4E-10 2E-14 98.4 4.8 55 269-324 16-88 (193)
8 PF13639 zf-RING_2: Ring finge 98.9 4.2E-10 9.1E-15 77.4 1.5 41 272-313 1-44 (44)
9 PHA02929 N1R/p28-like protein; 98.9 1.2E-09 2.6E-14 101.2 4.5 55 269-324 172-234 (238)
10 KOG1571 Predicted E3 ubiquitin 98.8 7.6E-10 1.6E-14 106.5 1.3 52 269-324 303-354 (355)
11 PF13923 zf-C3HC4_2: Zinc fing 98.8 2.1E-09 4.5E-14 72.2 2.2 38 274-312 1-39 (39)
12 KOG0320 Predicted E3 ubiquitin 98.6 2.1E-08 4.5E-13 88.1 3.6 54 269-323 129-186 (187)
13 cd00162 RING RING-finger (Real 98.6 3.5E-08 7.5E-13 66.4 3.4 43 273-316 1-45 (45)
14 PHA02926 zinc finger-like prot 98.5 4E-08 8.6E-13 89.3 3.0 52 269-321 168-234 (242)
15 PF15227 zf-C3HC4_4: zinc fing 98.5 6.6E-08 1.4E-12 66.2 2.8 38 274-312 1-42 (42)
16 KOG1924 RhoA GTPase effector D 98.5 3.7E-07 8E-12 95.0 9.3 34 90-123 614-648 (1102)
17 KOG1785 Tyrosine kinase negati 98.5 1.9E-08 4.1E-13 97.7 -0.2 55 269-324 367-423 (563)
18 KOG4628 Predicted E3 ubiquitin 98.5 6.3E-08 1.4E-12 93.9 2.7 50 272-322 230-283 (348)
19 smart00184 RING Ring finger. E 98.5 1.2E-07 2.7E-12 61.4 3.3 38 274-312 1-39 (39)
20 PF14634 zf-RING_5: zinc-RING 98.5 9.4E-08 2E-12 65.9 2.7 41 273-314 1-44 (44)
21 PF12678 zf-rbx1: RING-H2 zinc 98.4 1.7E-07 3.7E-12 71.7 3.3 40 273-313 21-73 (73)
22 PF00097 zf-C3HC4: Zinc finger 98.4 1.3E-07 2.8E-12 63.8 2.2 38 274-312 1-41 (41)
23 KOG1100 Predicted E3 ubiquitin 98.4 6.7E-08 1.5E-12 88.1 1.0 47 273-323 160-206 (207)
24 smart00504 Ubox Modified RING 98.4 3.4E-07 7.4E-12 67.1 3.9 46 272-318 2-47 (63)
25 COG5243 HRD1 HRD ubiquitin lig 98.4 2E-07 4.3E-12 90.1 3.0 47 269-316 285-344 (491)
26 TIGR00599 rad18 DNA repair pro 98.4 2E-07 4.4E-12 92.3 3.0 49 269-318 24-72 (397)
27 COG5540 RING-finger-containing 98.3 2.6E-07 5.5E-12 87.3 3.1 48 269-317 321-372 (374)
28 COG5574 PEX10 RING-finger-cont 98.3 3.3E-07 7.2E-12 85.1 2.5 48 269-317 213-262 (271)
29 KOG2164 Predicted E3 ubiquitin 98.3 4.8E-07 1E-11 90.8 3.7 55 271-326 186-247 (513)
30 PF13445 zf-RING_UBOX: RING-ty 98.1 1.2E-06 2.6E-11 60.3 1.8 31 274-306 1-35 (43)
31 KOG1924 RhoA GTPase effector D 98.0 1.1E-05 2.3E-10 84.5 7.6 11 123-133 629-639 (1102)
32 KOG0802 E3 ubiquitin ligase [P 98.0 2.3E-06 4.9E-11 88.6 1.9 47 269-316 289-340 (543)
33 KOG2177 Predicted E3 ubiquitin 97.9 3.9E-06 8.5E-11 77.0 1.6 45 269-314 11-55 (386)
34 COG5236 Uncharacterized conser 97.9 1.5E-05 3.3E-10 76.6 4.7 60 262-322 52-113 (493)
35 KOG0287 Postreplication repair 97.8 4.4E-06 9.6E-11 80.1 0.8 49 269-318 21-69 (442)
36 COG5432 RAD18 RING-finger-cont 97.8 6.4E-06 1.4E-10 77.6 1.3 49 269-318 23-71 (391)
37 KOG0824 Predicted E3 ubiquitin 97.8 8E-06 1.7E-10 77.3 1.9 51 270-321 6-57 (324)
38 PF04564 U-box: U-box domain; 97.8 1.4E-05 3E-10 61.0 2.6 48 270-318 3-51 (73)
39 KOG0978 E3 ubiquitin ligase in 97.7 7.5E-06 1.6E-10 85.7 0.5 54 269-323 641-697 (698)
40 TIGR00570 cdk7 CDK-activating 97.7 3.1E-05 6.8E-10 74.3 3.8 47 271-318 3-55 (309)
41 KOG1039 Predicted E3 ubiquitin 97.7 2.2E-05 4.8E-10 76.6 2.3 52 269-321 159-225 (344)
42 KOG4692 Predicted E3 ubiquitin 97.6 3.1E-05 6.8E-10 74.7 3.0 49 269-318 420-468 (489)
43 PF12861 zf-Apc11: Anaphase-pr 97.3 0.00017 3.8E-09 56.6 3.1 33 284-317 47-82 (85)
44 KOG4159 Predicted E3 ubiquitin 97.2 0.00018 3.9E-09 71.6 2.4 49 269-318 82-130 (398)
45 KOG0828 Predicted E3 ubiquitin 97.1 0.0002 4.3E-09 71.9 2.0 48 269-317 569-634 (636)
46 KOG0311 Predicted E3 ubiquitin 97.1 5.5E-05 1.2E-09 73.1 -2.6 57 270-327 42-100 (381)
47 PF14447 Prok-RING_4: Prokaryo 96.9 0.0003 6.5E-09 50.6 0.9 45 271-318 7-51 (55)
48 smart00744 RINGv The RING-vari 96.8 0.00087 1.9E-08 47.3 2.5 40 273-313 1-49 (49)
49 COG5152 Uncharacterized conser 96.8 0.00067 1.5E-08 61.0 2.0 53 269-322 194-246 (259)
50 COG5219 Uncharacterized conser 96.8 0.00096 2.1E-08 71.5 3.3 48 269-317 1467-1523(1525)
51 PF14835 zf-RING_6: zf-RING of 96.5 0.00061 1.3E-08 50.6 -0.3 43 271-316 7-50 (65)
52 KOG1813 Predicted E3 ubiquitin 96.4 0.0017 3.7E-08 61.6 2.0 50 271-321 241-290 (313)
53 KOG0825 PHD Zn-finger protein 96.3 0.0011 2.4E-08 69.8 0.4 51 271-322 123-176 (1134)
54 KOG0297 TNF receptor-associate 96.0 0.0029 6.3E-08 63.2 1.8 52 269-321 19-71 (391)
55 KOG2879 Predicted E3 ubiquitin 95.8 0.0074 1.6E-07 56.8 3.0 51 269-320 237-290 (298)
56 PF04641 Rtf2: Rtf2 RING-finge 95.5 0.022 4.8E-07 53.7 5.2 58 269-328 111-172 (260)
57 KOG4445 Uncharacterized conser 95.2 0.016 3.4E-07 55.4 3.3 48 269-317 113-186 (368)
58 KOG3002 Zn finger protein [Gen 95.1 0.012 2.7E-07 56.6 2.2 45 269-318 46-92 (299)
59 PF14570 zf-RING_4: RING/Ubox 95.1 0.018 3.9E-07 40.5 2.4 42 274-316 1-47 (48)
60 KOG0804 Cytoplasmic Zn-finger 95.0 0.011 2.3E-07 59.2 1.3 45 270-317 174-222 (493)
61 KOG1814 Predicted E3 ubiquitin 94.8 0.012 2.5E-07 58.4 1.2 33 269-302 182-217 (445)
62 PF05883 Baculo_RING: Baculovi 94.8 0.011 2.4E-07 50.3 0.9 35 271-306 26-69 (134)
63 KOG4739 Uncharacterized protei 94.6 0.014 3E-07 54.1 1.2 46 273-322 5-52 (233)
64 KOG1734 Predicted RING-contain 94.6 0.014 2.9E-07 55.0 1.0 49 269-318 222-282 (328)
65 KOG4185 Predicted E3 ubiquitin 94.5 0.025 5.4E-07 53.9 2.5 44 272-316 4-54 (296)
66 KOG4367 Predicted Zn-finger pr 94.4 0.021 4.6E-07 56.9 1.8 36 269-305 2-37 (699)
67 KOG2660 Locus-specific chromos 94.3 0.01 2.2E-07 57.3 -0.5 49 271-320 15-64 (331)
68 KOG0827 Predicted E3 ubiquitin 94.3 0.027 5.9E-07 55.5 2.3 46 272-319 5-58 (465)
69 PF11793 FANCL_C: FANCL C-term 94.2 0.0094 2E-07 45.1 -0.7 46 271-317 2-66 (70)
70 KOG1002 Nucleotide excision re 94.2 0.019 4.2E-07 58.5 1.1 47 269-316 534-585 (791)
71 PF07800 DUF1644: Protein of u 94.1 0.064 1.4E-06 46.8 4.0 52 271-322 2-96 (162)
72 KOG1645 RING-finger-containing 93.9 0.035 7.5E-07 55.1 2.3 44 270-314 3-53 (463)
73 KOG1428 Inhibitor of type V ad 93.9 0.03 6.5E-07 62.8 1.9 50 269-319 3484-3546(3738)
74 KOG1001 Helicase-like transcri 93.8 0.024 5.2E-07 60.3 1.0 45 272-318 455-501 (674)
75 COG5194 APC11 Component of SCF 93.7 0.061 1.3E-06 41.7 2.8 32 284-316 49-80 (88)
76 PF03854 zf-P11: P-11 zinc fin 93.7 0.029 6.3E-07 39.2 0.9 42 274-318 5-47 (50)
77 KOG3039 Uncharacterized conser 93.3 0.091 2E-06 49.0 3.8 49 269-318 219-271 (303)
78 PHA02825 LAP/PHD finger-like p 92.7 0.11 2.4E-06 45.4 3.2 49 268-317 5-59 (162)
79 KOG0826 Predicted E3 ubiquitin 92.5 0.1 2.2E-06 50.5 3.0 53 269-322 298-353 (357)
80 KOG2113 Predicted RNA binding 91.9 0.2 4.3E-06 48.3 4.3 52 269-322 341-392 (394)
81 COG5175 MOT2 Transcriptional r 91.8 0.1 2.3E-06 50.7 2.3 47 271-318 14-65 (480)
82 PHA03096 p28-like protein; Pro 91.2 0.12 2.6E-06 49.6 2.0 42 272-314 179-231 (284)
83 KOG2930 SCF ubiquitin ligase, 91.2 0.13 2.8E-06 41.9 1.8 31 284-315 76-106 (114)
84 PF05290 Baculo_IE-1: Baculovi 90.9 0.14 3.1E-06 43.5 1.9 49 270-319 79-134 (140)
85 KOG1493 Anaphase-promoting com 90.2 0.082 1.8E-06 40.7 -0.1 31 285-316 47-80 (84)
86 PF10272 Tmpp129: Putative tra 89.7 0.36 7.7E-06 47.7 3.8 48 269-317 269-351 (358)
87 PF11789 zf-Nse: Zinc-finger o 89.3 0.25 5.4E-06 35.9 1.8 42 269-311 9-53 (57)
88 PHA02862 5L protein; Provision 89.2 0.31 6.8E-06 42.0 2.7 46 271-317 2-53 (156)
89 KOG2932 E3 ubiquitin ligase in 88.5 0.13 2.9E-06 49.4 -0.0 48 272-322 91-139 (389)
90 KOG1923 Rac1 GTPase effector F 86.8 2.5 5.5E-05 45.3 8.1 7 98-104 375-381 (830)
91 KOG1941 Acetylcholine receptor 86.6 0.091 2E-06 52.0 -2.4 48 269-317 363-416 (518)
92 KOG4672 Uncharacterized conser 86.5 3.1 6.6E-05 41.7 8.0 7 130-136 435-441 (487)
93 PF10367 Vps39_2: Vacuolar sor 85.3 0.35 7.5E-06 38.5 0.7 31 269-300 76-108 (109)
94 KOG3579 Predicted E3 ubiquitin 84.5 0.42 9E-06 45.5 1.0 45 271-316 268-327 (352)
95 KOG3842 Adaptor protein Pellin 83.7 0.93 2E-05 43.9 2.9 48 269-318 339-415 (429)
96 PF12906 RINGv: RING-variant d 83.0 0.58 1.2E-05 32.6 0.9 39 274-312 1-47 (47)
97 COG5222 Uncharacterized conser 81.5 0.76 1.7E-05 44.1 1.4 43 271-314 274-318 (427)
98 KOG3799 Rab3 effector RIM1 and 81.4 0.37 8.1E-06 41.1 -0.6 45 269-317 63-118 (169)
99 COG5220 TFB3 Cdk activating ki 81.1 0.5 1.1E-05 44.1 0.1 45 269-314 8-61 (314)
100 KOG4672 Uncharacterized conser 80.4 6.2 0.00013 39.6 7.3 11 101-111 425-435 (487)
101 KOG2113 Predicted RNA binding 79.4 0.49 1.1E-05 45.7 -0.6 56 270-325 135-191 (394)
102 PF04710 Pellino: Pellino; In 78.5 0.66 1.4E-05 46.1 0.0 54 270-324 327-411 (416)
103 KOG3970 Predicted E3 ubiquitin 76.5 2.3 5.1E-05 39.4 2.9 46 271-317 50-105 (299)
104 KOG3800 Predicted E3 ubiquitin 75.9 2 4.3E-05 41.2 2.4 30 284-314 18-48 (300)
105 KOG4362 Transcriptional regula 75.4 0.71 1.5E-05 49.0 -0.8 46 271-317 21-69 (684)
106 KOG0825 PHD Zn-finger protein 75.0 1.7 3.6E-05 46.8 1.8 53 269-322 97-159 (1134)
107 KOG0298 DEAD box-containing he 74.8 0.84 1.8E-05 51.3 -0.4 46 271-317 1153-1199(1394)
108 KOG3899 Uncharacterized conser 74.7 2.6 5.5E-05 40.5 2.8 28 289-317 325-365 (381)
109 KOG3053 Uncharacterized conser 72.4 1.9 4E-05 40.7 1.3 48 269-317 18-82 (293)
110 KOG3161 Predicted E3 ubiquitin 72.3 1.3 2.7E-05 46.7 0.2 37 271-310 11-51 (861)
111 KOG0801 Predicted E3 ubiquitin 71.3 1.6 3.4E-05 38.5 0.5 22 269-290 175-199 (205)
112 PHA01732 proline-rich protein 69.3 7.4 0.00016 30.7 3.8 6 106-111 66-71 (94)
113 COG5183 SSM4 Protein involved 68.7 4.7 0.0001 43.7 3.4 55 269-324 10-72 (1175)
114 KOG3113 Uncharacterized conser 68.5 6 0.00013 37.3 3.7 57 269-328 109-169 (293)
115 KOG1952 Transcription factor N 68.1 3.4 7.4E-05 44.9 2.2 45 269-314 189-244 (950)
116 KOG1940 Zn-finger protein [Gen 67.5 3 6.4E-05 39.9 1.5 41 273-314 160-204 (276)
117 KOG0006 E3 ubiquitin-protein l 67.3 65 0.0014 31.6 10.4 31 270-301 220-252 (446)
118 KOG1925 Rac1 GTPase effector F 64.1 7.7 0.00017 40.1 3.7 9 103-111 281-289 (817)
119 PLN02189 cellulose synthase 63.8 5 0.00011 44.7 2.6 51 269-320 32-90 (1040)
120 PF04216 FdhE: Protein involve 62.5 1.6 3.4E-05 41.7 -1.3 54 269-323 170-228 (290)
121 COG5178 PRP8 U5 snRNP spliceos 62.4 6.6 0.00014 44.3 3.1 11 129-139 155-165 (2365)
122 TIGR01562 FdhE formate dehydro 62.2 3.5 7.6E-05 40.0 1.0 45 270-315 183-233 (305)
123 KOG2817 Predicted E3 ubiquitin 59.5 7.8 0.00017 38.7 2.8 44 272-316 335-384 (394)
124 KOG2114 Vacuolar assembly/sort 56.5 3 6.5E-05 45.3 -0.6 47 272-322 841-888 (933)
125 KOG1812 Predicted E3 ubiquitin 54.6 4.4 9.5E-05 40.5 0.2 32 270-302 145-180 (384)
126 KOG2068 MOT2 transcription fac 52.6 11 0.00023 36.9 2.4 46 272-318 250-299 (327)
127 KOG2893 Zn finger protein [Gen 51.7 88 0.0019 29.5 8.1 12 230-241 317-328 (341)
128 KOG4185 Predicted E3 ubiquitin 50.1 2.4 5.1E-05 40.3 -2.4 45 270-315 206-265 (296)
129 KOG3039 Uncharacterized conser 48.4 12 0.00026 35.3 2.0 33 269-302 41-73 (303)
130 KOG0309 Conserved WD40 repeat- 48.3 10 0.00022 40.9 1.7 37 273-310 1030-1068(1081)
131 KOG1815 Predicted E3 ubiquitin 47.2 12 0.00025 38.1 1.9 50 269-319 68-128 (444)
132 PRK03564 formate dehydrogenase 47.2 9.1 0.0002 37.2 1.1 45 269-314 185-234 (309)
133 PF14569 zf-UDP: Zinc-binding 46.5 19 0.00041 28.0 2.5 48 270-318 8-63 (80)
134 PF02891 zf-MIZ: MIZ/SP-RING z 43.9 6.9 0.00015 27.5 -0.2 43 272-315 3-50 (50)
135 PF08746 zf-RING-like: RING-li 43.5 27 0.00058 23.7 2.7 23 289-312 19-43 (43)
136 KOG2231 Predicted E3 ubiquitin 41.6 2.8 6E-05 44.7 -3.6 52 267-320 74-128 (669)
137 KOG2034 Vacuolar sorting prote 41.6 15 0.00033 40.2 1.8 32 269-301 815-848 (911)
138 KOG1609 Protein involved in mR 41.0 19 0.00042 33.9 2.3 49 270-318 77-135 (323)
139 PF06906 DUF1272: Protein of u 38.2 27 0.00058 25.4 2.1 22 294-317 31-52 (57)
140 PF13240 zinc_ribbon_2: zinc-r 37.5 6 0.00013 23.4 -1.1 23 294-316 1-23 (23)
141 PF04423 Rad50_zn_hook: Rad50 34.3 12 0.00027 26.4 -0.2 12 307-318 21-32 (54)
142 PF14326 DUF4384: Domain of un 33.8 1.6E+02 0.0035 22.4 6.1 31 120-150 8-38 (83)
143 PF07975 C1_4: TFIIH C1-like d 33.4 26 0.00056 25.0 1.4 25 288-313 26-50 (51)
144 PRK15319 AIDA autotransporter- 32.3 93 0.002 37.3 6.1 7 219-225 1915-1921(2039)
145 KOG0269 WD40 repeat-containing 31.9 37 0.0008 36.8 2.7 40 271-311 779-820 (839)
146 PF10764 Gin: Inhibitor of sig 30.9 44 0.00095 23.2 2.1 31 273-305 1-31 (46)
147 PF09244 DUF1964: Domain of un 30.9 61 0.0013 24.1 2.9 21 122-142 5-25 (68)
148 KOG4218 Nuclear hormone recept 30.5 36 0.00077 33.7 2.2 15 269-283 13-27 (475)
149 COG4306 Uncharacterized protei 30.3 27 0.00059 29.6 1.2 26 294-322 30-55 (160)
150 smart00557 IG_FLMN Filamin-typ 28.1 1.4E+02 0.0031 23.1 5.0 29 114-142 53-81 (93)
151 PF10235 Cript: Microtubule-as 27.9 31 0.00067 27.5 1.1 38 271-318 44-81 (90)
152 COG4357 Zinc finger domain con 26.9 40 0.00087 27.3 1.6 25 294-318 64-92 (105)
153 COG3058 FdhE Uncharacterized p 25.2 40 0.00086 32.4 1.5 64 249-314 164-233 (308)
154 PF10571 UPF0547: Uncharacteri 24.7 18 0.0004 22.0 -0.6 21 295-315 3-23 (26)
155 PF07076 DUF1344: Protein of u 23.6 1.3E+02 0.0027 22.3 3.6 30 101-132 11-42 (61)
156 KOG0802 E3 ubiquitin ligase [P 23.3 36 0.00079 35.5 0.9 47 269-320 477-523 (543)
157 TIGR00622 ssl1 transcription f 22.5 62 0.0013 26.9 2.0 41 272-313 56-110 (112)
158 PLN02436 cellulose synthase A 22.4 59 0.0013 36.8 2.3 51 269-320 34-92 (1094)
159 PF10083 DUF2321: Uncharacteri 22.1 49 0.0011 29.0 1.3 25 294-321 30-54 (158)
160 KOG1812 Predicted E3 ubiquitin 21.3 53 0.0011 32.9 1.6 41 271-312 306-351 (384)
161 PF07191 zinc-ribbons_6: zinc- 20.7 6.5 0.00014 29.9 -3.8 42 272-319 2-43 (70)
162 KOG4590 Signal transduction pr 20.5 2.5E+02 0.0055 28.5 6.2 8 309-316 398-405 (409)
163 cd05711 Ig_FcalphaRI Immunoglo 20.4 3.7E+02 0.008 20.6 6.0 57 84-140 8-74 (94)
164 PLN02638 cellulose synthase A 20.3 71 0.0015 36.2 2.4 51 269-320 15-73 (1079)
No 1
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-64 Score=474.40 Aligned_cols=243 Identities=55% Similarity=0.947 Sum_probs=224.7
Q ss_pred CCCCCccccccceeeccceeccCcceEEEeCCCCCCeEEEEEEeecCCCceEEEEEeeeecCccceeccccccCCCeEEE
Q 020171 82 PPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTIT 161 (330)
Q Consensus 82 ~~p~~~~~~q~a~~irn~VNl~K~SLrl~~~~~~~~~~~v~FtFDA~~~~~iti~~~a~E~~~~~~~~~~~~~~~p~~~~ 161 (330)
..+-+++ ||+|++|||+||++|+++++..|+.+++.|+++|+|||+.+|+|||+|||||+..|..+..++..+.++|++
T Consensus 101 ~~~~~~~-~~~av~i~~d~~l~k~~~~l~~d~~~P~~~~~sf~fda~~~g~itV~~fakE~~~c~~~~~~~~~~~~~t~~ 179 (349)
T KOG4265|consen 101 APPDQYL-HQKAVTIRNDVNLDKETLRLDPDPLTPGLLLLSFTFDALAQGAITVLFFAKEEVLCGLVLLVPDELPSITVH 179 (349)
T ss_pred cCCCccc-cccceeccchhhcccceEEeccCCCCcceeEEEEEeccccCccEEEEEeccccccccccccccccCCCeeEE
Confidence 4555688 999999999999999999999999899999999999999999999999999999999999888888999999
Q ss_pred ecCCCCceeeCCCCCcccCCccChhhhccc-CCceeeEEEEEEecCCCCccccCCCCCCcceEEEEEeecccCCchHhhH
Q 020171 162 FQQGLGQKFRQPCGTGIDLSMFDEIALTKV-NAEIYPIIVRAEARPADSSEAEANPTGNSQITMAVFEKKEEGGFHVQVI 240 (330)
Q Consensus 162 f~~G~~Q~F~q~~~~~id~~~~~~~el~~~-~~~~~PlvI~~~~~~~~~~~~~~~~~~~~q~t~a~~ek~~~~~~~~~v~ 240 (330)
|++|++|+|.|++ ++||++.|+++||.+. +.++||++|++++...+ ..+....+.|+|+++.++.++|+++++++
T Consensus 180 f~~gl~Q~F~q~s-~~~D~~~~~~~~L~~~~~~~vyplsi~~~~~~~~---~~~~~~~~~~~tq~v~~~~~~G~~~~~~~ 255 (349)
T KOG4265|consen 180 FEKGLGQLFLQPS-TGIDFSVMSIDDLSLSLDRRVYPLSISAEVQPSD---VVESMGVFHVITQAVYEKDEKGSIKIKVL 255 (349)
T ss_pred cccchhhhhcCCc-cccchhhcchhhhcccccCCeeeEEEEEEEeccc---cccccceeeEEEeeeeccCcCCceeeeee
Confidence 9999999999999 8999999999999998 99999999999999532 13445668899999999988999999999
Q ss_pred HHHHhhcCeeeeehhhhcCCCCCCCCCC----CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccc
Q 020171 241 KQILWVNRVRYELQEIYGIGSTVAGDET----DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPV 316 (330)
Q Consensus 241 kq~l~~~~~~y~l~e~~g~~~~~~~~~d----~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I 316 (330)
||++|++|++|+|+||||++++..+..+ +++++|||||++.+||++|||||+|+|.+|++.|+.++++|||||+.|
T Consensus 256 kQ~~~v~g~~y~LqEiyGien~~v~~~~~~~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi 335 (349)
T KOG4265|consen 256 KQILWVDGTRYLLQEIYGIENSTVEGTDADESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPI 335 (349)
T ss_pred eeEEEEeCceeeeehhhccccCCCCCCccccccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccch
Confidence 9999999999999999999966544332 778999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEcCCCCC
Q 020171 317 ERLLEIKVNNAAD 329 (330)
Q Consensus 317 ~~~l~i~~~~~~~ 329 (330)
.++++|+++++++
T Consensus 336 ~~ll~i~~~~~~~ 348 (349)
T KOG4265|consen 336 EELLEIYVNKEDR 348 (349)
T ss_pred HhhheeccccccC
Confidence 9999999998875
No 2
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.2e-15 Score=105.47 Aligned_cols=53 Identities=38% Similarity=0.956 Sum_probs=47.4
Q ss_pred CCcccccccCCCCCeEecCCCccccHHHHHHHhh-cCCCCccccccccCeEEEE
Q 020171 271 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF-QTNRCPICRQPVERLLEIK 323 (330)
Q Consensus 271 ~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~-~~~~CPiCR~~I~~~l~i~ 323 (330)
+.||.||++.+.|.++.-|||||+|++|..+++. ....|||||++|..+++.+
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY 60 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence 3799999999999999999999999999988766 5678999999999887754
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.43 E-value=6.8e-14 Score=99.13 Aligned_cols=49 Identities=51% Similarity=1.267 Sum_probs=44.0
Q ss_pred CCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccCe
Q 020171 271 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 319 (330)
Q Consensus 271 ~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~ 319 (330)
+.+|.||+++.++++++||||++||..|+..|+....+||+||+.|+++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4689999999999999999999999999999998889999999999864
No 4
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=5.1e-12 Score=117.92 Aligned_cols=88 Identities=38% Similarity=0.770 Sum_probs=66.9
Q ss_pred cCCchHhhHHHHHhhcCeeee-------eh----hhhcCCCCCCCC--CCCCCCcccccccCCCCCeEecCCCccccHHH
Q 020171 232 EGGFHVQVIKQILWVNRVRYE-------LQ----EIYGIGSTVAGD--ETDSGKECVICLSEPRDTTVLPCRHMCMCSEC 298 (330)
Q Consensus 232 ~~~~~~~v~kq~l~~~~~~y~-------l~----e~~g~~~~~~~~--~d~~~~~C~ICl~~~~d~v~lPCgH~c~C~~C 298 (330)
++.+.++.+|.++..++..|. +- +.|. ++..+.. .+....+|.|||+.++|.+||+||||..|..|
T Consensus 249 ~Eg~~v~qLke~l~~d~vsy~gCcek~el~d~vtrl~k-~~~g~~~~~s~~~~~LC~ICmDaP~DCvfLeCGHmVtCt~C 327 (350)
T KOG4275|consen 249 EEGLTVRQLKEILDDDFVSYKGCCEKYELDDRVTRLYK-GNDGEQHSRSLATRRLCAICMDAPRDCVFLECGHMVTCTKC 327 (350)
T ss_pred cccchHHHhhhhhhccCCcccchhHHHHHHHHHHHHHh-cccccccccchhHHHHHHHHhcCCcceEEeecCcEEeehhh
Confidence 456788999999988888771 11 2221 1111111 11337899999999999999999999999999
Q ss_pred HHHHhhcCCCCccccccccCeEEEEc
Q 020171 299 AKVLQFQTNRCPICRQPVERLLEIKV 324 (330)
Q Consensus 299 a~~l~~~~~~CPiCR~~I~~~l~i~~ 324 (330)
-+.| +.|||||+.|.++++|+.
T Consensus 328 Gkrm----~eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 328 GKRM----NECPICRQYIVRVVRIFR 349 (350)
T ss_pred cccc----ccCchHHHHHHHHHhhhc
Confidence 9988 699999999999998874
No 5
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.5e-10 Score=103.97 Aligned_cols=59 Identities=24% Similarity=0.575 Sum_probs=49.8
Q ss_pred CCCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcC---CCCcccccccc--CeEEEEcCCC
Q 020171 268 TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT---NRCPICRQPVE--RLLEIKVNNA 327 (330)
Q Consensus 268 d~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~---~~CPiCR~~I~--~~l~i~~~~~ 327 (330)
+....+|.|||+..+|.|+..|||+ |||.|+-.|+... ..||+|++.|. .++-|+..++
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~ 107 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGS 107 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCC
Confidence 4566799999999999999999999 9999999997643 45899999884 5777777665
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=5.4e-10 Score=104.58 Aligned_cols=50 Identities=24% Similarity=0.769 Sum_probs=45.9
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccCe
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 319 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~ 319 (330)
+....|.+||+...+...+||||+ ||+.|+..|......||+||..+.-.
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCc
Confidence 566899999999999999999999 99999999999888999999988543
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.92 E-value=9.4e-10 Score=98.40 Aligned_cols=55 Identities=31% Similarity=0.767 Sum_probs=45.8
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhc----------------CCCCccccccccC--eEEEEc
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ----------------TNRCPICRQPVER--LLEIKV 324 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~----------------~~~CPiCR~~I~~--~l~i~~ 324 (330)
+++.+|.||++..++.++++|||. ||+.|+..|... ..+||+||+.|.. ++.|+.
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 456789999999999999999999 999999998642 2479999999965 555553
No 8
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.91 E-value=4.2e-10 Score=77.45 Aligned_cols=41 Identities=41% Similarity=0.917 Sum_probs=35.6
Q ss_pred CcccccccCCC---CCeEecCCCccccHHHHHHHhhcCCCCcccc
Q 020171 272 KECVICLSEPR---DTTVLPCRHMCMCSECAKVLQFQTNRCPICR 313 (330)
Q Consensus 272 ~~C~ICl~~~~---d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR 313 (330)
++|.||++... .++.++|+|. ||.+|+..|..++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 37999999863 5789999999 99999999999889999998
No 9
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.90 E-value=1.2e-09 Score=101.21 Aligned_cols=55 Identities=31% Similarity=0.839 Sum_probs=46.4
Q ss_pred CCCCcccccccCCCC--------CeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEEEc
Q 020171 269 DSGKECVICLSEPRD--------TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 324 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d--------~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i~~ 324 (330)
..+.+|.||++...+ .++.+|+|. ||..|+..|+.++.+||+||..+..+++-+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~ 234 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKSRF 234 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeeeee
Confidence 345799999998554 356689999 9999999999988999999999998877654
No 10
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=7.6e-10 Score=106.46 Aligned_cols=52 Identities=37% Similarity=0.943 Sum_probs=47.0
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEEEc
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 324 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i~~ 324 (330)
.....|+||++++.+++++||||+|.|..|++.+ .+||+||+.|..+++++.
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l----~~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHL----PQCPVCRQRIRLVRKRYR 354 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEEchHHHhhC----CCCchhHHHHHHHHHHhc
Confidence 5567899999999999999999999999999988 579999999998887764
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.81 E-value=2.1e-09 Score=72.18 Aligned_cols=38 Identities=45% Similarity=1.089 Sum_probs=33.7
Q ss_pred ccccccCCCCC-eEecCCCccccHHHHHHHhhcCCCCccc
Q 020171 274 CVICLSEPRDT-TVLPCRHMCMCSECAKVLQFQTNRCPIC 312 (330)
Q Consensus 274 C~ICl~~~~d~-v~lPCgH~c~C~~Ca~~l~~~~~~CPiC 312 (330)
|.||++..++. ++++|||+ ||++|+..|..++.+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 89999999998 78999999 9999999998888899998
No 12
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.1e-08 Score=88.13 Aligned_cols=54 Identities=31% Similarity=0.742 Sum_probs=44.1
Q ss_pred CCCCcccccccCCCCC--eEecCCCccccHHHHHHHhhcCCCCccccccccC--eEEEE
Q 020171 269 DSGKECVICLSEPRDT--TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER--LLEIK 323 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~--v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~--~l~i~ 323 (330)
+.-..|.|||+....- +-.-|||+ ||+.|++.++....+||+||..|.. +.+|+
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 3446799999987764 34789999 9999999999999999999987754 55554
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.61 E-value=3.5e-08 Score=66.36 Aligned_cols=43 Identities=44% Similarity=1.032 Sum_probs=35.8
Q ss_pred cccccccCCCCCeEec-CCCccccHHHHHHHhhc-CCCCccccccc
Q 020171 273 ECVICLSEPRDTTVLP-CRHMCMCSECAKVLQFQ-TNRCPICRQPV 316 (330)
Q Consensus 273 ~C~ICl~~~~d~v~lP-CgH~c~C~~Ca~~l~~~-~~~CPiCR~~I 316 (330)
+|.||++...+.+.+. |+|. ||..|+..|..+ ..+||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999986654444 9999 999999999877 67899999864
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=98.54 E-value=4e-08 Score=89.32 Aligned_cols=52 Identities=27% Similarity=0.646 Sum_probs=40.8
Q ss_pred CCCCcccccccCCC---------CCeEecCCCccccHHHHHHHhhcC------CCCccccccccCeEE
Q 020171 269 DSGKECVICLSEPR---------DTTVLPCRHMCMCSECAKVLQFQT------NRCPICRQPVERLLE 321 (330)
Q Consensus 269 ~~~~~C~ICl~~~~---------d~v~lPCgH~c~C~~Ca~~l~~~~------~~CPiCR~~I~~~l~ 321 (330)
..+.+|.|||+..- --++.+|+|. ||..|+..|+... ..||+||..+..+..
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 45689999998631 2467799999 9999999998742 459999998875443
No 15
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.51 E-value=6.6e-08 Score=66.17 Aligned_cols=38 Identities=39% Similarity=0.906 Sum_probs=30.3
Q ss_pred ccccccCCCCCeEecCCCccccHHHHHHHhhcC----CCCccc
Q 020171 274 CVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT----NRCPIC 312 (330)
Q Consensus 274 C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~----~~CPiC 312 (330)
|.||++-.++.+.|+|||. ||..|+..|+... -.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8899999999999999999 9999999987654 259987
No 16
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=3.7e-07 Score=95.01 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=18.5
Q ss_pred cccceeeccceeccCcce-EEEeCCCCCCeEEEEE
Q 020171 90 HQKAVTIRNDVNVKKETL-RVEPDEENPGQFLVAF 123 (330)
Q Consensus 90 ~q~a~~irn~VNl~K~SL-rl~~~~~~~~~~~v~F 123 (330)
-.+.+..+-.|-+||--. ++++.+-..+.|.|..
T Consensus 614 LkpKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv 648 (1102)
T KOG1924|consen 614 LKPKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKV 648 (1102)
T ss_pred CCccccCCCCCccccCCccccCccccCccceeeec
Confidence 455677788888888443 3444332223444443
No 17
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.51 E-value=1.9e-08 Score=97.75 Aligned_cols=55 Identities=25% Similarity=0.689 Sum_probs=47.8
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhc--CCCCccccccccCeEEEEc
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ--TNRCPICRQPVERLLEIKV 324 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~--~~~CPiCR~~I~~~l~i~~ 324 (330)
..-.+|.||-++.+|+.+-||||+ +|..|+..|... ...||+||..|...-.|.+
T Consensus 367 sTFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vii 423 (563)
T KOG1785|consen 367 STFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVII 423 (563)
T ss_pred chHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccceee
Confidence 345689999999999999999999 999999999643 4789999999988776655
No 18
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=6.3e-08 Score=93.91 Aligned_cols=50 Identities=28% Similarity=0.690 Sum_probs=42.8
Q ss_pred CcccccccCCCC---CeEecCCCccccHHHHHHHhhcCCC-CccccccccCeEEE
Q 020171 272 KECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQTNR-CPICRQPVERLLEI 322 (330)
Q Consensus 272 ~~C~ICl~~~~d---~v~lPCgH~c~C~~Ca~~l~~~~~~-CPiCR~~I~~~l~i 322 (330)
..|+||||++.. ..+|||+|. |+..|++.|..+..+ ||+|++.|..-...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~~~~ 283 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTDSGS 283 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCCCCC
Confidence 599999999875 688999999 999999999988754 99999988665443
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.48 E-value=1.2e-07 Score=61.42 Aligned_cols=38 Identities=47% Similarity=1.104 Sum_probs=34.4
Q ss_pred ccccccCCCCCeEecCCCccccHHHHHHHhh-cCCCCccc
Q 020171 274 CVICLSEPRDTTVLPCRHMCMCSECAKVLQF-QTNRCPIC 312 (330)
Q Consensus 274 C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~-~~~~CPiC 312 (330)
|.||++..+++++++|+|. ||..|++.|.. ...+||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 99999999877 45679987
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.47 E-value=9.4e-08 Score=65.86 Aligned_cols=41 Identities=37% Similarity=0.980 Sum_probs=35.1
Q ss_pred cccccccCC---CCCeEecCCCccccHHHHHHHhhcCCCCccccc
Q 020171 273 ECVICLSEP---RDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQ 314 (330)
Q Consensus 273 ~C~ICl~~~---~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~ 314 (330)
+|.||++.. +...+++|||. ||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 589999988 34799999999 999999998745578999985
No 21
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.43 E-value=1.7e-07 Score=71.70 Aligned_cols=40 Identities=33% Similarity=0.737 Sum_probs=33.6
Q ss_pred cccccccCCC-------------CCeEecCCCccccHHHHHHHhhcCCCCcccc
Q 020171 273 ECVICLSEPR-------------DTTVLPCRHMCMCSECAKVLQFQTNRCPICR 313 (330)
Q Consensus 273 ~C~ICl~~~~-------------d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR 313 (330)
.|.||++... ..++..|||. |+..|+..|+..+++||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 4999998772 2366789999 99999999999999999998
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.42 E-value=1.3e-07 Score=63.76 Aligned_cols=38 Identities=37% Similarity=0.998 Sum_probs=34.2
Q ss_pred ccccccCCCCCe-EecCCCccccHHHHHHHhh--cCCCCccc
Q 020171 274 CVICLSEPRDTT-VLPCRHMCMCSECAKVLQF--QTNRCPIC 312 (330)
Q Consensus 274 C~ICl~~~~d~v-~lPCgH~c~C~~Ca~~l~~--~~~~CPiC 312 (330)
|.||++...+.+ +++|||. ||..|+..|+. ...+||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 889999999988 9999999 99999999877 45679998
No 23
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=6.7e-08 Score=88.11 Aligned_cols=47 Identities=38% Similarity=0.995 Sum_probs=42.6
Q ss_pred cccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEEE
Q 020171 273 ECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 323 (330)
Q Consensus 273 ~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i~ 323 (330)
.|.+|-++...+++|||+|+|+|..|...+ ..||+|+..+.+.++++
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~----~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESL----RICPICRSPKTSSVEVN 206 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccC----ccCCCCcChhhceeecc
Confidence 499999999999999999999999998864 57999999999888765
No 24
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.38 E-value=3.4e-07 Score=67.08 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=42.0
Q ss_pred CcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 272 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 272 ~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
..|.||++-.++.++++|||. ||..|+..|..+..+||+||..+..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 469999999999999999999 9999999998878899999998843
No 25
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2e-07 Score=90.06 Aligned_cols=47 Identities=38% Similarity=0.871 Sum_probs=40.9
Q ss_pred CCCCcccccccCCC-------------CCeEecCCCccccHHHHHHHhhcCCCCccccccc
Q 020171 269 DSGKECVICLSEPR-------------DTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPV 316 (330)
Q Consensus 269 ~~~~~C~ICl~~~~-------------d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I 316 (330)
.+++.|.|||++.. ...-|||||. ++..|++.|...+.+|||||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 56689999999832 2478999999 99999999999999999999985
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=2e-07 Score=92.26 Aligned_cols=49 Identities=27% Similarity=0.628 Sum_probs=44.2
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
+....|.||++...+.++++|+|. ||..|+..|+.....||+||..+..
T Consensus 24 e~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 456799999999999999999999 9999999988777789999998864
No 27
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.6e-07 Score=87.27 Aligned_cols=48 Identities=38% Similarity=0.873 Sum_probs=41.2
Q ss_pred CCCCcccccccCCCC---CeEecCCCccccHHHHHHHhh-cCCCCcccccccc
Q 020171 269 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQF-QTNRCPICRQPVE 317 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d---~v~lPCgH~c~C~~Ca~~l~~-~~~~CPiCR~~I~ 317 (330)
+.+-+|+|||+++.. .++|||.|. |+..|+..|.. -+++||+||..|-
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 556799999998753 689999999 99999999987 4689999999873
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.3e-07 Score=85.14 Aligned_cols=48 Identities=31% Similarity=0.804 Sum_probs=42.1
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHH-HhhcCC-CCcccccccc
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKV-LQFQTN-RCPICRQPVE 317 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~-l~~~~~-~CPiCR~~I~ 317 (330)
+.+..|.||++...+...++|||+ ||+.|+-. |..++. .||+||+.+.
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 457889999999999999999999 99999988 776654 4999999764
No 29
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=4.8e-07 Score=90.78 Aligned_cols=55 Identities=29% Similarity=0.695 Sum_probs=46.8
Q ss_pred CCcccccccCCCCCeEecCCCccccHHHHHHHhhcC-----CCCccccccccC--eEEEEcCC
Q 020171 271 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT-----NRCPICRQPVER--LLEIKVNN 326 (330)
Q Consensus 271 ~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~-----~~CPiCR~~I~~--~l~i~~~~ 326 (330)
+..|.|||+...-++++.|||. ||..|+-.++... ..|||||..|.- +..|+..+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~ 247 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIED 247 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeecc
Confidence 6789999999999999999999 9999998865543 579999999977 77776644
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.12 E-value=1.2e-06 Score=60.26 Aligned_cols=31 Identities=35% Similarity=0.879 Sum_probs=20.9
Q ss_pred ccccccCCCC----CeEecCCCccccHHHHHHHhhcC
Q 020171 274 CVICLSEPRD----TTVLPCRHMCMCSECAKVLQFQT 306 (330)
Q Consensus 274 C~ICl~~~~d----~v~lPCgH~c~C~~Ca~~l~~~~ 306 (330)
|.||++ +.+ .++|+|||. ||.+|++.|..++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHHHhcC
Confidence 889999 766 799999999 9999999997754
No 31
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.04 E-value=1.1e-05 Score=84.46 Aligned_cols=11 Identities=18% Similarity=0.619 Sum_probs=4.3
Q ss_pred EEeecCCCceE
Q 020171 123 FTFDAAAPGSI 133 (330)
Q Consensus 123 FtFDA~~~~~i 133 (330)
|.+-+.++..+
T Consensus 629 ~nW~kI~p~d~ 639 (1102)
T KOG1924|consen 629 FNWSKIVPRDL 639 (1102)
T ss_pred CCccccCcccc
Confidence 33334444333
No 32
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.3e-06 Score=88.59 Aligned_cols=47 Identities=32% Similarity=0.743 Sum_probs=42.6
Q ss_pred CCCCcccccccCCCC-----CeEecCCCccccHHHHHHHhhcCCCCccccccc
Q 020171 269 DSGKECVICLSEPRD-----TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPV 316 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d-----~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I 316 (330)
..+..|.||++.... +..|+|+|. ||..|++.|..+.++||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhh
Confidence 446799999999877 899999999 99999999999999999999944
No 33
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=3.9e-06 Score=76.98 Aligned_cols=45 Identities=33% Similarity=0.762 Sum_probs=39.9
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccc
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQ 314 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~ 314 (330)
++...|.||++..+++++++|+|. ||..|+..++...-.||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 456799999999999999999999 999999997764468999994
No 34
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.86 E-value=1.5e-05 Score=76.62 Aligned_cols=60 Identities=28% Similarity=0.674 Sum_probs=49.4
Q ss_pred CCCCCCCCCCCcccccccCCCCCeEecCCCccccHHHHHHHhh--cCCCCccccccccCeEEE
Q 020171 262 TVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF--QTNRCPICRQPVERLLEI 322 (330)
Q Consensus 262 ~~~~~~d~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~--~~~~CPiCR~~I~~~l~i 322 (330)
+..+|.|+++..|+||-....-..++||+|. +|..|+-.+|. ..+.|++||..-+.++-.
T Consensus 52 sSaddtDEen~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT 113 (493)
T COG5236 52 SSADDTDEENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVVFT 113 (493)
T ss_pred ccccccccccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEEEe
Confidence 3445556777899999999999999999999 99999988754 567899999988776644
No 35
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.85 E-value=4.4e-06 Score=80.08 Aligned_cols=49 Identities=29% Similarity=0.623 Sum_probs=44.6
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
++-..|-||.+=++-.++.||+|. ||.-|++..+.....||.|+..+.+
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccch
Confidence 345789999999999999999999 9999999988888999999998865
No 36
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.82 E-value=6.4e-06 Score=77.57 Aligned_cols=49 Identities=29% Similarity=0.512 Sum_probs=44.1
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
+....|.||-+..+-.++.+|||. ||+-|++..+.....||+||.....
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hhHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHHh
Confidence 345789999999999999999999 9999999988888999999998754
No 37
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=8e-06 Score=77.28 Aligned_cols=51 Identities=29% Similarity=0.690 Sum_probs=42.6
Q ss_pred CCCcccccccCCCCCeEecCCCccccHHHHHHH-hhcCCCCccccccccCeEE
Q 020171 270 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVL-QFQTNRCPICRQPVERLLE 321 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l-~~~~~~CPiCR~~I~~~l~ 321 (330)
...+|.||+....-.+.|+|+|. ||+.|++-. +.....|++||.+|.+.+-
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~Hk-FCyiCiKGsy~ndk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHK-FCYICIKGSYKNDKKTCAVCRFPIDSTID 57 (324)
T ss_pred cCCcceeeeccCCcCccccccch-hhhhhhcchhhcCCCCCceecCCCCcchh
Confidence 45799999999988899999999 999999964 3344569999999987543
No 38
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.80 E-value=1.4e-05 Score=61.02 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=39.1
Q ss_pred CCCcccccccCCCCCeEecCCCccccHHHHHHHhhc-CCCCccccccccC
Q 020171 270 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER 318 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~-~~~CPiCR~~I~~ 318 (330)
+...|.||.+-.+|.++++|||. |+..|+..|..+ ...||+||+.+..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 35689999999999999999999 999999999888 7889999998865
No 39
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=7.5e-06 Score=85.72 Aligned_cols=54 Identities=22% Similarity=0.656 Sum_probs=44.6
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHH-hhcCCCCcccccccc--CeEEEE
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVL-QFQTNRCPICRQPVE--RLLEIK 323 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l-~~~~~~CPiCR~~I~--~~l~i~ 323 (330)
..-..|.+|-++++|+++.-|+|+ ||..|+... .....+||.|.+.|. .+.+|+
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 344679999999999999999999 999999974 334678999999984 466554
No 40
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.69 E-value=3.1e-05 Score=74.25 Aligned_cols=47 Identities=26% Similarity=0.737 Sum_probs=35.3
Q ss_pred CCcccccccCC---CCC--eEecCCCccccHHHHHHHhhc-CCCCccccccccC
Q 020171 271 GKECVICLSEP---RDT--TVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER 318 (330)
Q Consensus 271 ~~~C~ICl~~~---~d~--v~lPCgH~c~C~~Ca~~l~~~-~~~CPiCR~~I~~ 318 (330)
+..|.||++.. .++ .+.+|||. ||..|+..++.. ...||.|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~-~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCc-ccHHHHHHHhcCCCCCCCCCCCccch
Confidence 45899999852 232 23379999 999999996544 4579999988754
No 41
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=2.2e-05 Score=76.55 Aligned_cols=52 Identities=31% Similarity=0.727 Sum_probs=42.1
Q ss_pred CCCCcccccccCCCCCe-----E---ecCCCccccHHHHHHHh--hc-----CCCCccccccccCeEE
Q 020171 269 DSGKECVICLSEPRDTT-----V---LPCRHMCMCSECAKVLQ--FQ-----TNRCPICRQPVERLLE 321 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v-----~---lPCgH~c~C~~Ca~~l~--~~-----~~~CPiCR~~I~~~l~ 321 (330)
..+++|.|||+...+.. + .+|.|. ||..|+..|+ .+ +..||+||...+.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 34679999999876654 3 679999 9999999998 45 4679999998876554
No 42
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=3.1e-05 Score=74.69 Aligned_cols=49 Identities=27% Similarity=0.669 Sum_probs=45.2
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
.++..|.||+..+.++++.||+|. -|++|+..-..+.+.|=.|...|..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeee
Confidence 566799999999999999999999 9999999988888999999998875
No 43
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.33 E-value=0.00017 Score=56.56 Aligned_cols=33 Identities=27% Similarity=0.566 Sum_probs=27.3
Q ss_pred CeEecCCCccccHHHHHHHhhc---CCCCcccccccc
Q 020171 284 TTVLPCRHMCMCSECAKVLQFQ---TNRCPICRQPVE 317 (330)
Q Consensus 284 ~v~lPCgH~c~C~~Ca~~l~~~---~~~CPiCR~~I~ 317 (330)
.++-.|+|. |+.-|+..|..+ +..||+||+...
T Consensus 47 lv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 47 LVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 356679999 999999999875 367999999763
No 44
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00018 Score=71.58 Aligned_cols=49 Identities=33% Similarity=0.699 Sum_probs=44.1
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
..+.+|.||+...-..+.+||||. ||..|+.....+...||.||..+.+
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 456899999999999999999999 9999988877778899999998876
No 45
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0002 Score=71.90 Aligned_cols=48 Identities=29% Similarity=0.766 Sum_probs=37.8
Q ss_pred CCCCcccccccCC-----------------CCCeEecCCCccccHHHHHHHhhcCC-CCcccccccc
Q 020171 269 DSGKECVICLSEP-----------------RDTTVLPCRHMCMCSECAKVLQFQTN-RCPICRQPVE 317 (330)
Q Consensus 269 ~~~~~C~ICl~~~-----------------~d~v~lPCgH~c~C~~Ca~~l~~~~~-~CPiCR~~I~ 317 (330)
+....|+|||+.. ++-++.||.|+ |...|+..|...-+ .||+||.++-
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCC
Confidence 4557899999742 23456799999 99999999976434 7999999874
No 46
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=5.5e-05 Score=73.09 Aligned_cols=57 Identities=30% Similarity=0.609 Sum_probs=45.5
Q ss_pred CCCcccccccCCCCC-eEecCCCccccHHHHHH-HhhcCCCCccccccccCeEEEEcCCC
Q 020171 270 SGKECVICLSEPRDT-TVLPCRHMCMCSECAKV-LQFQTNRCPICRQPVERLLEIKVNNA 327 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~-v~lPCgH~c~C~~Ca~~-l~~~~~~CPiCR~~I~~~l~i~~~~~ 327 (330)
.+..|.|||+-.+.+ +..-|.|. ||.+|+.. ++..++.||-||+...+-..++.+.+
T Consensus 42 ~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~ 100 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPN 100 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhccccccCCCCcc
Confidence 457899999988775 45569999 99999886 66667889999999987766655443
No 47
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.95 E-value=0.0003 Score=50.64 Aligned_cols=45 Identities=38% Similarity=0.880 Sum_probs=37.5
Q ss_pred CCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 271 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 271 ~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
.-.|+.|......-+++||+|+ .|..|-...++ +.||+|-.+|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rY--ngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERY--NGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccce-eeccccChhhc--cCCCCCCCcccC
Confidence 3579999999888899999999 99999766543 789999888753
No 48
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.84 E-value=0.00087 Score=47.32 Aligned_cols=40 Identities=33% Similarity=0.767 Sum_probs=32.4
Q ss_pred ccccccc--CCCCCeEecCC-----CccccHHHHHHHhhcC--CCCcccc
Q 020171 273 ECVICLS--EPRDTTVLPCR-----HMCMCSECAKVLQFQT--NRCPICR 313 (330)
Q Consensus 273 ~C~ICl~--~~~d~v~lPCg-----H~c~C~~Ca~~l~~~~--~~CPiCR 313 (330)
.|.||++ +..+..+.||. |. ++..|+..|...+ .+|++|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4899997 45567899996 77 9999999998654 5799995
No 49
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.79 E-value=0.00067 Score=60.98 Aligned_cols=53 Identities=23% Similarity=0.436 Sum_probs=44.6
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEE
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 322 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i 322 (330)
+--..|.||-..++..++.-|||. ||..|+..-......|-+|-+.......+
T Consensus 194 ~IPF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 194 KIPFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred CCceeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 334589999999999999999999 99999988666678999998877665543
No 50
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.77 E-value=0.00096 Score=71.50 Aligned_cols=48 Identities=23% Similarity=0.620 Sum_probs=36.5
Q ss_pred CCCCcccccccCCC-------CCeEecCCCccccHHHHHHHhhcC--CCCcccccccc
Q 020171 269 DSGKECVICLSEPR-------DTTVLPCRHMCMCSECAKVLQFQT--NRCPICRQPVE 317 (330)
Q Consensus 269 ~~~~~C~ICl~~~~-------d~v~lPCgH~c~C~~Ca~~l~~~~--~~CPiCR~~I~ 317 (330)
+.-.||.||++.-. .-..--|+|. |+..|+-.|...+ ++||+||..|.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCccccccc
Confidence 34568999997321 2344569999 9999999997654 68999998775
No 51
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.47 E-value=0.00061 Score=50.64 Aligned_cols=43 Identities=28% Similarity=0.805 Sum_probs=23.1
Q ss_pred CCcccccccCCCCCe-EecCCCccccHHHHHHHhhcCCCCccccccc
Q 020171 271 GKECVICLSEPRDTT-VLPCRHMCMCSECAKVLQFQTNRCPICRQPV 316 (330)
Q Consensus 271 ~~~C~ICl~~~~d~v-~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I 316 (330)
...|.+|.+-.+..+ +.-|.|+ ||+.|+..-. .+.||+|+.+-
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~--~~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCI--GSECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS---B-TTTGGGGT--TTB-SSS--B-
T ss_pred hcCCcHHHHHhcCCceeccCccH-HHHHHhHHhc--CCCCCCcCChH
Confidence 467999999999875 6789999 9999997632 35699998865
No 52
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0017 Score=61.64 Aligned_cols=50 Identities=24% Similarity=0.501 Sum_probs=43.6
Q ss_pred CCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccCeEE
Q 020171 271 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLE 321 (330)
Q Consensus 271 ~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~ 321 (330)
..-|-||...+.+.|+..|+|. ||..|+..-...+..|.+|-+.+.++..
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~ 290 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFN 290 (313)
T ss_pred CccccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccc
Confidence 3459999999999999999999 9999998866667899999998877654
No 53
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.32 E-value=0.0011 Score=69.77 Aligned_cols=51 Identities=22% Similarity=0.467 Sum_probs=42.2
Q ss_pred CCcccccccCCCCC---eEecCCCccccHHHHHHHhhcCCCCccccccccCeEEE
Q 020171 271 GKECVICLSEPRDT---TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 322 (330)
Q Consensus 271 ~~~C~ICl~~~~d~---v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i 322 (330)
...|.||+..+.|- .-.+|+|. ||..|+..|....++||+||..+..++..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeeee
Confidence 45788888877763 44589999 99999999999899999999988776554
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.05 E-value=0.0029 Score=63.15 Aligned_cols=52 Identities=33% Similarity=0.695 Sum_probs=44.9
Q ss_pred CCCCcccccccCCCCCeE-ecCCCccccHHHHHHHhhcCCCCccccccccCeEE
Q 020171 269 DSGKECVICLSEPRDTTV-LPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLE 321 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~-lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~ 321 (330)
+++..|.||+...++.+. ..|||. ||..|+..|...+..||.||..+.....
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred cccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhhc
Confidence 456899999999999888 599999 9999999998888899999887755443
No 55
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.0074 Score=56.84 Aligned_cols=51 Identities=29% Similarity=0.683 Sum_probs=40.3
Q ss_pred CCCCcccccccCCCCC-eEecCCCccccHHHHHHHhh--cCCCCccccccccCeE
Q 020171 269 DSGKECVICLSEPRDT-TVLPCRHMCMCSECAKVLQF--QTNRCPICRQPVERLL 320 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~-v~lPCgH~c~C~~Ca~~l~~--~~~~CPiCR~~I~~~l 320 (330)
..+.+|++|-+.+... ++.+|||. +|+.|+..-+. .+-+||.|-..+..+.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCcchh
Confidence 6678999999999886 56669999 99999886332 2358999998887544
No 56
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.50 E-value=0.022 Score=53.73 Aligned_cols=58 Identities=21% Similarity=0.418 Sum_probs=45.9
Q ss_pred CCCCcccccccCCC----CCeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEEEcCCCC
Q 020171 269 DSGKECVICLSEPR----DTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNNAA 328 (330)
Q Consensus 269 ~~~~~C~ICl~~~~----d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i~~~~~~ 328 (330)
.....|.|...... -+.+.+|||+ |+..+++.+. ....||+|-.++...=-|.++..+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp~~ 172 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELK-KSKKCPVCGKPFTEEDIIPLNPPE 172 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhc-ccccccccCCccccCCEEEecCCc
Confidence 55678999997764 3678899999 9999999995 456799999999876666665544
No 57
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=95.25 E-value=0.016 Score=55.38 Aligned_cols=48 Identities=31% Similarity=0.685 Sum_probs=34.9
Q ss_pred CCCCcccccccCCCC---CeEecCCCccccHHHHHHH------------------hhc-----CCCCcccccccc
Q 020171 269 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVL------------------QFQ-----TNRCPICRQPVE 317 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d---~v~lPCgH~c~C~~Ca~~l------------------~~~-----~~~CPiCR~~I~ 317 (330)
-....|+|||--+.+ .++.+|-|. |.+.|+... +.. ...|||||..|.
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 345689999976654 678899999 999996542 111 145999999883
No 58
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.10 E-value=0.012 Score=56.64 Aligned_cols=45 Identities=29% Similarity=0.818 Sum_probs=37.2
Q ss_pred CCCCcccccccCCCCCeEecC--CCccccHHHHHHHhhcCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPC--RHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPC--gH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
.+-.+|.||.+...-.++ .| ||+ .|..|...+ .++||.||.+|..
T Consensus 46 ~~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~---~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKV---SNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCcccce-ecCCCcE-ehhhhhhhh---cccCCcccccccc
Confidence 345789999999888844 78 599 999999765 4899999999874
No 59
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.06 E-value=0.018 Score=40.49 Aligned_cols=42 Identities=33% Similarity=0.810 Sum_probs=21.4
Q ss_pred ccccccCC--CCCeEec--CCCccccHHHHHHHhh-cCCCCccccccc
Q 020171 274 CVICLSEP--RDTTVLP--CRHMCMCSECAKVLQF-QTNRCPICRQPV 316 (330)
Q Consensus 274 C~ICl~~~--~d~v~lP--CgH~c~C~~Ca~~l~~-~~~~CPiCR~~I 316 (330)
|.+|.++. ++..++| ||+. .|..|...++. ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 56777764 4556777 6788 99999888775 467899999864
No 60
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.96 E-value=0.011 Score=59.23 Aligned_cols=45 Identities=24% Similarity=0.540 Sum_probs=35.0
Q ss_pred CCCcccccccCCCC-C---eEecCCCccccHHHHHHHhhcCCCCcccccccc
Q 020171 270 SGKECVICLSEPRD-T---TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 317 (330)
Q Consensus 270 ~~~~C~ICl~~~~d-~---v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~ 317 (330)
+--.|.|||++.-. + +-..|.|. |...|+..|+. .+||+||-.-.
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hs-fh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHS-FHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccc-cchHHHhhccc--CcChhhhhhcC
Confidence 44689999998543 2 56679999 99999999863 68999996443
No 61
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.012 Score=58.39 Aligned_cols=33 Identities=36% Similarity=0.804 Sum_probs=28.2
Q ss_pred CCCCcccccccCCC---CCeEecCCCccccHHHHHHH
Q 020171 269 DSGKECVICLSEPR---DTTVLPCRHMCMCSECAKVL 302 (330)
Q Consensus 269 ~~~~~C~ICl~~~~---d~v~lPCgH~c~C~~Ca~~l 302 (330)
.....|.||+++.. .+.++||+|. ||..|++..
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY 217 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDY 217 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchH-HHHHHHHHH
Confidence 34578999999875 4799999999 999999875
No 62
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.83 E-value=0.011 Score=50.31 Aligned_cols=35 Identities=23% Similarity=0.557 Sum_probs=28.9
Q ss_pred CCcccccccCCCC---CeEecCC------CccccHHHHHHHhhcC
Q 020171 271 GKECVICLSEPRD---TTVLPCR------HMCMCSECAKVLQFQT 306 (330)
Q Consensus 271 ~~~C~ICl~~~~d---~v~lPCg------H~c~C~~Ca~~l~~~~ 306 (330)
..||.||+++.-+ ++.+.|+ || ||.+|.+.|+...
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkm-fc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKM-FCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHH-HHHHHHHHHHhhc
Confidence 5799999997655 7888898 88 9999999996443
No 63
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.63 E-value=0.014 Score=54.11 Aligned_cols=46 Identities=30% Similarity=0.899 Sum_probs=31.8
Q ss_pred cccccccCCC-C-CeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEE
Q 020171 273 ECVICLSEPR-D-TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 322 (330)
Q Consensus 273 ~C~ICl~~~~-d-~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i 322 (330)
.|.-|.-... + .-++.|+|+ ||..|...-. ...|++||.. .++++|
T Consensus 5 hCn~C~~~~~~~~f~LTaC~Hv-fC~~C~k~~~--~~~C~lCkk~-ir~i~l 52 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHV-FCEPCLKASS--PDVCPLCKKS-IRIIQL 52 (233)
T ss_pred EeccccccCCCCceeeeechhh-hhhhhcccCC--ccccccccce-eeeeec
Confidence 4666665433 3 467789999 9999987642 2389999998 444443
No 64
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.014 Score=55.03 Aligned_cols=49 Identities=24% Similarity=0.589 Sum_probs=38.3
Q ss_pred CCCCcccccccCCC----------CCeEecCCCccccHHHHHHHhh--cCCCCccccccccC
Q 020171 269 DSGKECVICLSEPR----------DTTVLPCRHMCMCSECAKVLQF--QTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~----------d~v~lPCgH~c~C~~Ca~~l~~--~~~~CPiCR~~I~~ 318 (330)
.++..|.||=...- ++--|.|+|. |+..|++-|-. ++.+||-|...|+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 45678999975432 4668999999 99999999854 45689999887753
No 65
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.025 Score=53.91 Aligned_cols=44 Identities=36% Similarity=0.816 Sum_probs=36.5
Q ss_pred CcccccccCCCC------CeEecCCCccccHHHHHHHhhcC-CCCccccccc
Q 020171 272 KECVICLSEPRD------TTVLPCRHMCMCSECAKVLQFQT-NRCPICRQPV 316 (330)
Q Consensus 272 ~~C~ICl~~~~d------~v~lPCgH~c~C~~Ca~~l~~~~-~~CPiCR~~I 316 (330)
.+|.||-+.+.+ +.+|-|||. +|..|+..+...+ ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~-~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHT-ICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCce-ehHhHHHHHhcCceeeccCCCCcc
Confidence 479999887654 678889999 9999999987654 5699999985
No 66
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.37 E-value=0.021 Score=56.95 Aligned_cols=36 Identities=33% Similarity=0.795 Sum_probs=31.7
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhc
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ 305 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~ 305 (330)
+++..|.||-+=+++.++|+|+|. +|..||.....+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~-lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHN-LCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccH-HHHHHHHhhccc
Confidence 356789999999999999999999 999999976544
No 67
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.34 E-value=0.01 Score=57.28 Aligned_cols=49 Identities=24% Similarity=0.551 Sum_probs=41.5
Q ss_pred CCcccccccCCCC-CeEecCCCccccHHHHHHHhhcCCCCccccccccCeE
Q 020171 271 GKECVICLSEPRD-TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLL 320 (330)
Q Consensus 271 ~~~C~ICl~~~~d-~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l 320 (330)
-..|.+|-.=..| |++.-|-|. ||..|+-..+..++.||+|...|....
T Consensus 15 ~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred ceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcc
Confidence 4589999999988 467779999 999999887777899999999887653
No 68
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.027 Score=55.46 Aligned_cols=46 Identities=26% Similarity=0.628 Sum_probs=33.1
Q ss_pred CcccccccCCCC----C-eEecCCCccccHHHHHHHhhc--C-CCCccccccccCe
Q 020171 272 KECVICLSEPRD----T-TVLPCRHMCMCSECAKVLQFQ--T-NRCPICRQPVERL 319 (330)
Q Consensus 272 ~~C~ICl~~~~d----~-v~lPCgH~c~C~~Ca~~l~~~--~-~~CPiCR~~I~~~ 319 (330)
.+|.|| +..++ . .+--|||. |...|+..|... + ..||+||-.+-..
T Consensus 5 A~C~Ic-~d~~p~~~~l~~i~~cGhi-fh~~cl~qwfe~~Ps~R~cpic~ik~~~r 58 (465)
T KOG0827|consen 5 AECHIC-IDGRPNDHELGPIGTCGHI-FHTTCLTQWFEGDPSNRGCPICQIKLQER 58 (465)
T ss_pred ceeeEe-ccCCccccccccccchhhH-HHHHHHHHHHccCCccCCCCceeecccce
Confidence 589999 44433 2 34459999 999999999764 3 4799999444433
No 69
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=94.23 E-value=0.0094 Score=45.14 Aligned_cols=46 Identities=26% Similarity=0.574 Sum_probs=21.8
Q ss_pred CCcccccccCCC-C-----CeEe--cCCCccccHHHHHHHhhc---C--------CCCcccccccc
Q 020171 271 GKECVICLSEPR-D-----TTVL--PCRHMCMCSECAKVLQFQ---T--------NRCPICRQPVE 317 (330)
Q Consensus 271 ~~~C~ICl~~~~-d-----~v~l--PCgH~c~C~~Ca~~l~~~---~--------~~CPiCR~~I~ 317 (330)
+.+|.||++..- + .+-- .|++. |+..|+..|... + .+||.|+++|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~-fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKK-FHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCH-HHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999998644 2 1221 47777 888999998553 1 24999999875
No 70
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.19 E-value=0.019 Score=58.49 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=38.7
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhh-----cCCCCccccccc
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF-----QTNRCPICRQPV 316 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~-----~~~~CPiCR~~I 316 (330)
....+|.+|-+...|.+...|.|. ||.-|+..... .+-+||.|-..+
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 566799999999999999999999 99999977532 235799996543
No 71
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.10 E-value=0.064 Score=46.83 Aligned_cols=52 Identities=27% Similarity=0.635 Sum_probs=38.4
Q ss_pred CCcccccccCCCCCeEecCC-Ccc-----------ccHHHHHHHhhc-------------------------------CC
Q 020171 271 GKECVICLSEPRDTTVLPCR-HMC-----------MCSECAKVLQFQ-------------------------------TN 307 (330)
Q Consensus 271 ~~~C~ICl~~~~d~v~lPCg-H~c-----------~C~~Ca~~l~~~-------------------------------~~ 307 (330)
+..|.|||+-+=++|+|-|. |-- ..+.|++.+.+. .-
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 46899999999999999886 211 246788775321 12
Q ss_pred CCccccccccCeEEE
Q 020171 308 RCPICRQPVERLLEI 322 (330)
Q Consensus 308 ~CPiCR~~I~~~l~i 322 (330)
.||+||..|.+-..+
T Consensus 82 ~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVV 96 (162)
T ss_pred cCccccCceeceEEc
Confidence 499999999887665
No 72
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.035 Score=55.07 Aligned_cols=44 Identities=30% Similarity=0.713 Sum_probs=36.3
Q ss_pred CCCcccccccCCCC-----CeEecCCCccccHHHHHHHhhcC--CCCccccc
Q 020171 270 SGKECVICLSEPRD-----TTVLPCRHMCMCSECAKVLQFQT--NRCPICRQ 314 (330)
Q Consensus 270 ~~~~C~ICl~~~~d-----~v~lPCgH~c~C~~Ca~~l~~~~--~~CPiCR~ 314 (330)
.+..|.|||+.... ++.+-|||+ |=+.|++.|..+. ..||.|-.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghl-Fgs~cie~wl~k~~~~~cp~c~~ 53 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHL-FGSQCIEKWLGKKTKMQCPLCSG 53 (463)
T ss_pred ccccCceeeeeeeecCceEEeeeccccc-ccHHHHHHHHhhhhhhhCcccCC
Confidence 46789999998653 578899999 9999999998653 56999954
No 73
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=93.87 E-value=0.03 Score=62.79 Aligned_cols=50 Identities=26% Similarity=0.730 Sum_probs=39.4
Q ss_pred CCCCcccccccCCCC---CeEecCCCccccHHHHHHHhhc----------CCCCccccccccCe
Q 020171 269 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQ----------TNRCPICRQPVERL 319 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d---~v~lPCgH~c~C~~Ca~~l~~~----------~~~CPiCR~~I~~~ 319 (330)
+.++.|+||+++.-. ++-|-|+|+ |...|.+.++.. -..||+|..+|+.+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 566799999988543 688999999 999998875432 15699999988753
No 74
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.76 E-value=0.024 Score=60.33 Aligned_cols=45 Identities=31% Similarity=0.674 Sum_probs=37.5
Q ss_pred CcccccccCCCCCeEecCCCccccHHHHHHHhhc-C-CCCccccccccC
Q 020171 272 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ-T-NRCPICRQPVER 318 (330)
Q Consensus 272 ~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~-~-~~CPiCR~~I~~ 318 (330)
..|.||++ ..+.++..|+|. +|.+|....... . ..||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 778899999999 999998875443 2 359999998754
No 75
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=93.69 E-value=0.061 Score=41.72 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=28.3
Q ss_pred CeEecCCCccccHHHHHHHhhcCCCCccccccc
Q 020171 284 TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPV 316 (330)
Q Consensus 284 ~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I 316 (330)
++.--|.|. |..-|+..|+...+.||+||+..
T Consensus 49 v~wG~CnHa-FH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 49 VVWGVCNHA-FHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred EEEEecchH-HHHHHHHHHHhhCCCCCCCCcee
Confidence 455569999 99999999999999999999875
No 76
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=93.65 E-value=0.029 Score=39.24 Aligned_cols=42 Identities=29% Similarity=0.893 Sum_probs=25.6
Q ss_pred ccccccCCCCCeEecCC-CccccHHHHHHHhhcCCCCccccccccC
Q 020171 274 CVICLSEPRDTTVLPCR-HMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 274 C~ICl~~~~d~v~lPCg-H~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
|.-|.-+. .-++-|. |. +|-.|+..|...++.|+||..++-.
T Consensus 5 CKsCWf~~--k~Li~C~dHY-LCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 5 CKSCWFAN--KGLIKCSDHY-LCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp --SS-S----SSEEE-SS-E-EEHHHHHHT-SSSSEETTTTEE---
T ss_pred ChhhhhcC--CCeeeecchh-HHHHHHHHHhccccCCCcccCcCcc
Confidence 44454333 3456787 77 9999999999999999999887644
No 77
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.33 E-value=0.091 Score=49.02 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=41.8
Q ss_pred CCCCcccccccCCCC----CeEecCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRD----TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d----~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
+....|.||.+...+ +++-||||+ +|.+|++.|...-..||+|-.+...
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcc
Confidence 356789999988776 478899999 9999999998777889999988865
No 78
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=92.66 E-value=0.11 Score=45.41 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=36.7
Q ss_pred CCCCCcccccccCCCCCeEecCCCcc----ccHHHHHHHhhcC--CCCcccccccc
Q 020171 268 TDSGKECVICLSEPRDTTVLPCRHMC----MCSECAKVLQFQT--NRCPICRQPVE 317 (330)
Q Consensus 268 d~~~~~C~ICl~~~~d~v~lPCgH~c----~C~~Ca~~l~~~~--~~CPiCR~~I~ 317 (330)
+..+.+|-||.+...+ ...||+-.. .+.+|++.|...+ ..|++|++...
T Consensus 5 s~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 5 SLMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3567899999988654 456877431 4789999997764 56999988763
No 79
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=92.49 E-value=0.1 Score=50.52 Aligned_cols=53 Identities=25% Similarity=0.612 Sum_probs=39.7
Q ss_pred CCCCcccccccCCCCCeEecC-CCccccHHHHHHHhhcCCCCcccccc--ccCeEEE
Q 020171 269 DSGKECVICLSEPRDTTVLPC-RHMCMCSECAKVLQFQTNRCPICRQP--VERLLEI 322 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPC-gH~c~C~~Ca~~l~~~~~~CPiCR~~--I~~~l~i 322 (330)
.+...|.||+....+.+++-- |-+ ||+.|+-......++||+--.+ +..++++
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyV-fCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl 353 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYV-FCYPCIFSYVVNYGHCPVTGYPASVDHLIRL 353 (357)
T ss_pred CccccChhHHhccCCCceEEecceE-EeHHHHHHHHHhcCCCCccCCcchHHHHHHH
Confidence 566789999998887655554 777 9999999988888999985443 3444444
No 80
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=91.95 E-value=0.2 Score=48.28 Aligned_cols=52 Identities=12% Similarity=-0.096 Sum_probs=45.3
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEE
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 322 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i 322 (330)
-...+|-.|-.....+++.+|+|.-+|.+||. ......|++|..-+..+++|
T Consensus 341 ~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 341 MSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccceeeeec
Confidence 45678999999999999999999999999998 34457899999988888877
No 81
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.84 E-value=0.1 Score=50.65 Aligned_cols=47 Identities=26% Similarity=0.752 Sum_probs=34.0
Q ss_pred CCcccccccCC--CCCeEec--CCCccccHHHHHHHhhc-CCCCccccccccC
Q 020171 271 GKECVICLSEP--RDTTVLP--CRHMCMCSECAKVLQFQ-TNRCPICRQPVER 318 (330)
Q Consensus 271 ~~~C~ICl~~~--~d~v~lP--CgH~c~C~~Ca~~l~~~-~~~CPiCR~~I~~ 318 (330)
++.|..|++.. .|--|.| ||-. .|..|...++.. +.+||-||....+
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 34599999864 3334544 6777 899998877665 4689999987644
No 82
>PHA03096 p28-like protein; Provisional
Probab=91.24 E-value=0.12 Score=49.58 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=31.0
Q ss_pred CcccccccCCC--------CCeEecCCCccccHHHHHHHhhcC---CCCccccc
Q 020171 272 KECVICLSEPR--------DTTVLPCRHMCMCSECAKVLQFQT---NRCPICRQ 314 (330)
Q Consensus 272 ~~C~ICl~~~~--------d~v~lPCgH~c~C~~Ca~~l~~~~---~~CPiCR~ 314 (330)
..|-|||+... ..++--|.|. ||..|+..|+..+ ..|+.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~-fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHE-FNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcH-HHHHHHHHHHHhhhhcccCccccc
Confidence 78999998643 3566679999 9999999998753 33555543
No 83
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.20 E-value=0.13 Score=41.86 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=26.8
Q ss_pred CeEecCCCccccHHHHHHHhhcCCCCcccccc
Q 020171 284 TTVLPCRHMCMCSECAKVLQFQTNRCPICRQP 315 (330)
Q Consensus 284 ~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~ 315 (330)
++.--|.|. |..-|+..|+++.+.||+|.+.
T Consensus 76 VaWG~CNHa-FH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 76 VAWGVCNHA-FHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred EEeeecchH-HHHHHHHHHHhhcCcCCCcCcc
Confidence 344569999 9999999999999999999764
No 84
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.93 E-value=0.14 Score=43.48 Aligned_cols=49 Identities=24% Similarity=0.558 Sum_probs=38.8
Q ss_pred CCCcccccccCCCCCeEec----CCCccccHHHHHHHhhcC---CCCccccccccCe
Q 020171 270 SGKECVICLSEPRDTTVLP----CRHMCMCSECAKVLQFQT---NRCPICRQPVERL 319 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~v~lP----CgH~c~C~~Ca~~l~~~~---~~CPiCR~~I~~~ 319 (330)
.-.+|.||.+...|-.+|- ||-. .|..|...||+.. ..||+|+.++.+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~-iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYS-ICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchH-HHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4578999999988876664 7866 9999977766643 5799999988764
No 85
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=0.082 Score=40.70 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=24.5
Q ss_pred eEecCCCccccHHHHHHHhhcC---CCCccccccc
Q 020171 285 TVLPCRHMCMCSECAKVLQFQT---NRCPICRQPV 316 (330)
Q Consensus 285 v~lPCgH~c~C~~Ca~~l~~~~---~~CPiCR~~I 316 (330)
++--|.|+ |..-|+..|.... ..||+||+..
T Consensus 47 v~G~C~h~-fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 47 VWGYCLHA-FHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred HHHHHHHH-HHHHHHHHHhcCccccccCCcchhee
Confidence 34459999 9999999986542 4699999875
No 86
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=89.69 E-value=0.36 Score=47.72 Aligned_cols=48 Identities=27% Similarity=0.661 Sum_probs=31.9
Q ss_pred CCCCcccccccCCCCCeEe-----------------c-----CCCccccHHHHHHHh-------------hcCCCCcccc
Q 020171 269 DSGKECVICLSEPRDTTVL-----------------P-----CRHMCMCSECAKVLQ-------------FQTNRCPICR 313 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~l-----------------P-----CgH~c~C~~Ca~~l~-------------~~~~~CPiCR 313 (330)
++.+.|.-||.+..++.+. + ||=| -|-+|+-+|. ..+..||.||
T Consensus 269 ~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPm-WC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCR 347 (358)
T PF10272_consen 269 QELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPM-WCLECMGKWFASRQDQQHPETWLSGKCPCPTCR 347 (358)
T ss_pred cccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccch-HHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCc
Confidence 3445677788777776554 1 3334 4899988763 2346799999
Q ss_pred cccc
Q 020171 314 QPVE 317 (330)
Q Consensus 314 ~~I~ 317 (330)
+.+.
T Consensus 348 a~FC 351 (358)
T PF10272_consen 348 AKFC 351 (358)
T ss_pred ccce
Confidence 9874
No 87
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=89.26 E-value=0.25 Score=35.92 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=28.6
Q ss_pred CCCCcccccccCCCCCeEe-cCCCccccHHHHHHHhhc--CCCCcc
Q 020171 269 DSGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQ--TNRCPI 311 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~l-PCgH~c~C~~Ca~~l~~~--~~~CPi 311 (330)
.....|.|.+....+.+.- -|+|. |..+.+..+... ..+||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~-fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHT-FEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--E-EEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCe-ecHHHHHHHHHhcCCCCCCC
Confidence 3457899999999998775 89999 999999998733 356998
No 88
>PHA02862 5L protein; Provisional
Probab=89.24 E-value=0.31 Score=42.00 Aligned_cols=46 Identities=15% Similarity=0.372 Sum_probs=34.3
Q ss_pred CCcccccccCCCCCeEecCCCc----cccHHHHHHHhhcC--CCCcccccccc
Q 020171 271 GKECVICLSEPRDTTVLPCRHM----CMCSECAKVLQFQT--NRCPICRQPVE 317 (330)
Q Consensus 271 ~~~C~ICl~~~~d~v~lPCgH~----c~C~~Ca~~l~~~~--~~CPiCR~~I~ 317 (330)
+..|-||++...+. +-||+.. -.+.+|+..|...+ ..|++|+....
T Consensus 2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 46899999987554 5787742 15689999997654 56999998763
No 89
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=88.52 E-value=0.13 Score=49.37 Aligned_cols=48 Identities=31% Similarity=0.736 Sum_probs=32.5
Q ss_pred CcccccccCCCC-CeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEE
Q 020171 272 KECVICLSEPRD-TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 322 (330)
Q Consensus 272 ~~C~ICl~~~~d-~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i 322 (330)
..|.-|---... -.++||.|+ ||.+||..-- -+.||.|-..|.++-++
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~--dK~Cp~C~d~VqrIeq~ 139 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHV-FCLECARSDS--DKICPLCDDRVQRIEQI 139 (389)
T ss_pred EeecccCCcceeeecccccchh-hhhhhhhcCc--cccCcCcccHHHHHHHh
Confidence 356666433322 367899999 9999997531 35799998877665443
No 90
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=86.84 E-value=2.5 Score=45.30 Aligned_cols=7 Identities=29% Similarity=0.216 Sum_probs=2.6
Q ss_pred cceeccC
Q 020171 98 NDVNVKK 104 (330)
Q Consensus 98 n~VNl~K 104 (330)
|++-+++
T Consensus 375 nW~alKP 381 (830)
T KOG1923|consen 375 NWLALKP 381 (830)
T ss_pred cccccCc
Confidence 3333333
No 91
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.62 E-value=0.091 Score=51.95 Aligned_cols=48 Identities=23% Similarity=0.580 Sum_probs=37.4
Q ss_pred CCCCcccccccC----CCCCeEecCCCccccHHHHHHHhhcC--CCCcccccccc
Q 020171 269 DSGKECVICLSE----PRDTTVLPCRHMCMCSECAKVLQFQT--NRCPICRQPVE 317 (330)
Q Consensus 269 ~~~~~C~ICl~~----~~d~v~lPCgH~c~C~~Ca~~l~~~~--~~CPiCR~~I~ 317 (330)
+.+.-|-.|=+. ...--.|||.|+ |+..|+..+..++ .+||-||+-+.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 667889999864 344678899999 9999999876554 57999995444
No 92
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=86.53 E-value=3.1 Score=41.69 Aligned_cols=7 Identities=29% Similarity=0.653 Sum_probs=2.7
Q ss_pred CceEEEE
Q 020171 130 PGSITVA 136 (330)
Q Consensus 130 ~~~iti~ 136 (330)
+.++.|.
T Consensus 435 Pa~lRVR 441 (487)
T KOG4672|consen 435 PAQLRVR 441 (487)
T ss_pred chheeee
Confidence 3333333
No 93
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=85.26 E-value=0.35 Score=38.51 Aligned_cols=31 Identities=26% Similarity=0.672 Sum_probs=25.4
Q ss_pred CCCCcccccccCCCC--CeEecCCCccccHHHHH
Q 020171 269 DSGKECVICLSEPRD--TTVLPCRHMCMCSECAK 300 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d--~v~lPCgH~c~C~~Ca~ 300 (330)
+++..|.||-....+ .++.||||. ++..|++
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 456789999987654 688999999 9999975
No 94
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.49 E-value=0.42 Score=45.55 Aligned_cols=45 Identities=27% Similarity=0.635 Sum_probs=35.2
Q ss_pred CCcccccccCCCCCeEecCC----CccccHHHHHHHhhc-----------CCCCccccccc
Q 020171 271 GKECVICLSEPRDTTVLPCR----HMCMCSECAKVLQFQ-----------TNRCPICRQPV 316 (330)
Q Consensus 271 ~~~C~ICl~~~~d~v~lPCg----H~c~C~~Ca~~l~~~-----------~~~CPiCR~~I 316 (330)
-..|.+|.++..||-|+-|- |. ||+-|.+.-.++ ..+||+=-..|
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HK-FCFPCSResIK~Qg~sgevYCPSGdkCPLvgS~v 327 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHK-FCFPCSRESIKQQGASGEVYCPSGDKCPLVGSNV 327 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccc-eecccCHHHHHhhcCCCceeCCCCCcCcccCCcc
Confidence 47899999999999999995 88 999998875443 25677765443
No 95
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=83.72 E-value=0.93 Score=43.87 Aligned_cols=48 Identities=27% Similarity=0.589 Sum_probs=31.2
Q ss_pred CCCCcccccccCC-------------------CCCeEecCCCccccHHHHHHHhhc----------CCCCccccccccC
Q 020171 269 DSGKECVICLSEP-------------------RDTTVLPCRHMCMCSECAKVLQFQ----------TNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~-------------------~d~v~lPCgH~c~C~~Ca~~l~~~----------~~~CPiCR~~I~~ 318 (330)
..+++|.+|+..- -+-+|-||||| |++=....+.+ ...||+|-+.+..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv--~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV--CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc--cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 4568999999632 23478899999 44433333333 2469999887743
No 96
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=83.01 E-value=0.58 Score=32.58 Aligned_cols=39 Identities=28% Similarity=0.744 Sum_probs=25.0
Q ss_pred ccccccCCCC--CeEecCCCc----cccHHHHHHHhhc--CCCCccc
Q 020171 274 CVICLSEPRD--TTVLPCRHM----CMCSECAKVLQFQ--TNRCPIC 312 (330)
Q Consensus 274 C~ICl~~~~d--~v~lPCgH~----c~C~~Ca~~l~~~--~~~CPiC 312 (330)
|-||++...+ .++.||+-. ..+..|+..|... +.+|.+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 7899987543 578999832 1577999999774 4679887
No 97
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.48 E-value=0.76 Score=44.13 Aligned_cols=43 Identities=28% Similarity=0.780 Sum_probs=34.2
Q ss_pred CCcccccccCCCCCeEec-CCCccccHHHHHHHhhcC-CCCccccc
Q 020171 271 GKECVICLSEPRDTTVLP-CRHMCMCSECAKVLQFQT-NRCPICRQ 314 (330)
Q Consensus 271 ~~~C~ICl~~~~d~v~lP-CgH~c~C~~Ca~~l~~~~-~~CPiCR~ 314 (330)
...|..|-.-.++.+-.+ |+|. ||.+|+...+..+ -.||.|-.
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCccc
Confidence 478999998888877765 7788 9999999754444 57999955
No 98
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.38 E-value=0.37 Score=41.07 Aligned_cols=45 Identities=31% Similarity=0.841 Sum_probs=28.7
Q ss_pred CCCCccccccc-CCCCCeEecCCCcc------ccHHHHHHHhhcCC----CCcccccccc
Q 020171 269 DSGKECVICLS-EPRDTTVLPCRHMC------MCSECAKVLQFQTN----RCPICRQPVE 317 (330)
Q Consensus 269 ~~~~~C~ICl~-~~~d~v~lPCgH~c------~C~~Ca~~l~~~~~----~CPiCR~~I~ 317 (330)
+++..|-||+. .+.|- |||.| +|..|--.+...++ .|-+||....
T Consensus 63 ~ddatC~IC~KTKFADG----~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~ 118 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADG----CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQE 118 (169)
T ss_pred CcCcchhhhhhcccccc----cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHH
Confidence 45678999995 45554 88886 46666444333333 3888887654
No 99
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=81.11 E-value=0.5 Score=44.06 Aligned_cols=45 Identities=29% Similarity=0.756 Sum_probs=33.7
Q ss_pred CCCCcccccccCC---CCC--eEec-CCCccccHHHHHHHhhcC-CCCc--cccc
Q 020171 269 DSGKECVICLSEP---RDT--TVLP-CRHMCMCSECAKVLQFQT-NRCP--ICRQ 314 (330)
Q Consensus 269 ~~~~~C~ICl~~~---~d~--v~lP-CgH~c~C~~Ca~~l~~~~-~~CP--iCR~ 314 (330)
..+..|.||.+.. -|+ .+-| |-|. +|..|...+.... ..|| -|-.
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 3456899999763 243 4556 9999 9999999987664 5799 8854
No 100
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=80.39 E-value=6.2 Score=39.58 Aligned_cols=11 Identities=45% Similarity=0.655 Sum_probs=5.3
Q ss_pred eccCcceEEEe
Q 020171 101 NVKKETLRVEP 111 (330)
Q Consensus 101 Nl~K~SLrl~~ 111 (330)
|++.|..|||.
T Consensus 425 N~kaElT~~VP 435 (487)
T KOG4672|consen 425 NLKAELTRLVP 435 (487)
T ss_pred ccchHHHhhcc
Confidence 35555444444
No 101
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=79.37 E-value=0.49 Score=45.70 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=44.8
Q ss_pred CCCcccccccCCCCCeEecCCCccccHHHHHHH-hhcCCCCccccccccCeEEEEcC
Q 020171 270 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVL-QFQTNRCPICRQPVERLLEIKVN 325 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l-~~~~~~CPiCR~~I~~~l~i~~~ 325 (330)
..-.|++|+++..-.++.+|+|-.||-.|+... ......|+||-..+.+...|.-.
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i~d~ 191 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQIHDT 191 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhccccC
Confidence 345799999999999999999999999997765 33345699998888877777443
No 102
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=78.51 E-value=0.66 Score=46.15 Aligned_cols=54 Identities=20% Similarity=0.538 Sum_probs=0.0
Q ss_pred CCCcccccccCC-------------------CCCeEecCCCccccHHHHHHHhhc---------CCCCccccccccC---
Q 020171 270 SGKECVICLSEP-------------------RDTTVLPCRHMCMCSECAKVLQFQ---------TNRCPICRQPVER--- 318 (330)
Q Consensus 270 ~~~~C~ICl~~~-------------------~d~v~lPCgH~c~C~~Ca~~l~~~---------~~~CPiCR~~I~~--- 318 (330)
..++|.+|+..- -+-+|-||||+ .=...++-|... ...||+|-.++..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv-~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g 405 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHV-CSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQG 405 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccc-cchhhhhhhhcCCCCCCcccccccCCcccCcccCCCC
Confidence 478999999621 23589999999 344456556332 2579999998875
Q ss_pred eEEEEc
Q 020171 319 LLEIKV 324 (330)
Q Consensus 319 ~l~i~~ 324 (330)
.+++.+
T Consensus 406 ~vrLiF 411 (416)
T PF04710_consen 406 YVRLIF 411 (416)
T ss_dssp ------
T ss_pred ceEEEE
Confidence 455443
No 103
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.50 E-value=2.3 Score=39.35 Aligned_cols=46 Identities=28% Similarity=0.605 Sum_probs=35.9
Q ss_pred CCcccccccC--CCCCeEecCCCccccHHHHHHHhhc--------CCCCcccccccc
Q 020171 271 GKECVICLSE--PRDTTVLPCRHMCMCSECAKVLQFQ--------TNRCPICRQPVE 317 (330)
Q Consensus 271 ~~~C~ICl~~--~~d~v~lPCgH~c~C~~Ca~~l~~~--------~~~CPiCR~~I~ 317 (330)
...|..|-.. ..|++-|-|-|+ |.+.|...|..+ .-.||.|-+.|-
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhl-fHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHL-FHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccCcceeehhhhh-HHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 3467777763 568899999999 999999987543 246999988774
No 104
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=75.94 E-value=2 Score=41.16 Aligned_cols=30 Identities=23% Similarity=0.644 Sum_probs=24.1
Q ss_pred CeEecCCCccccHHHHHHHhhcC-CCCccccc
Q 020171 284 TTVLPCRHMCMCSECAKVLQFQT-NRCPICRQ 314 (330)
Q Consensus 284 ~v~lPCgH~c~C~~Ca~~l~~~~-~~CPiCR~ 314 (330)
..+-+|+|. +|.+|...+.... ..||.|-.
T Consensus 18 ~~in~C~H~-lCEsCvd~iF~~g~~~CpeC~~ 48 (300)
T KOG3800|consen 18 LMINECGHR-LCESCVDRIFSLGPAQCPECMV 48 (300)
T ss_pred eeeccccch-HHHHHHHHHHhcCCCCCCcccc
Confidence 345589999 9999999986654 57999954
No 105
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=75.38 E-value=0.71 Score=49.02 Aligned_cols=46 Identities=28% Similarity=0.708 Sum_probs=37.8
Q ss_pred CCcccccccCCCCCeEecCCCccccHHHHHHHhhc---CCCCcccccccc
Q 020171 271 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ---TNRCPICRQPVE 317 (330)
Q Consensus 271 ~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~---~~~CPiCR~~I~ 317 (330)
..+|-||+....+.+.+-|.|. ||..|...+... ...|++|+..++
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~-~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHI-FLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeeccchhhhhHH-HHhhhhhceeeccCccccchhhhhhhh
Confidence 4689999999999999999999 999998764333 356999997664
No 106
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=74.98 E-value=1.7 Score=46.83 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=37.3
Q ss_pred CCCCcccccccCCCC-CeEec---CCCccccHHHHHHHhhc------CCCCccccccccCeEEE
Q 020171 269 DSGKECVICLSEPRD-TTVLP---CRHMCMCSECAKVLQFQ------TNRCPICRQPVERLLEI 322 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d-~v~lP---CgH~c~C~~Ca~~l~~~------~~~CPiCR~~I~~~l~i 322 (330)
+....|.||++...| .-++| |+|. +|..|+..|+.+ ...|++|..-|...-++
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~-~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~ 159 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVEN-QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC 159 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhh-hhhHHHHHHHHHhhccccccccccHHHHhhhhhhh
Confidence 445677777777444 23444 9999 999999998654 35689998877664443
No 107
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=74.82 E-value=0.84 Score=51.35 Aligned_cols=46 Identities=30% Similarity=0.749 Sum_probs=39.1
Q ss_pred CCcccccccCCCC-CeEecCCCccccHHHHHHHhhcCCCCcccccccc
Q 020171 271 GKECVICLSEPRD-TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 317 (330)
Q Consensus 271 ~~~C~ICl~~~~d-~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~ 317 (330)
-..|.||++..++ -.+.-|||. +|..|...|...+..|++|...+.
T Consensus 1153 ~~~c~ic~dil~~~~~I~~cgh~-~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIAGCGHE-PCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred ccchHHHHHHHHhcCCeeeechh-HhhhHHHHHHHHhccCcchhhhhh
Confidence 3589999999884 567789999 999999999999999999975443
No 108
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.73 E-value=2.6 Score=40.53 Aligned_cols=28 Identities=29% Similarity=0.853 Sum_probs=21.7
Q ss_pred CCCccccHHHHHHH-------------hhcCCCCcccccccc
Q 020171 289 CRHMCMCSECAKVL-------------QFQTNRCPICRQPVE 317 (330)
Q Consensus 289 CgH~c~C~~Ca~~l-------------~~~~~~CPiCR~~I~ 317 (330)
||-| -|.+|+..| ..++.+||+||+.+.
T Consensus 325 crp~-wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPL-WCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccH-HHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 6677 899998776 334678999999874
No 109
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.45 E-value=1.9 Score=40.70 Aligned_cols=48 Identities=25% Similarity=0.560 Sum_probs=35.2
Q ss_pred CCCCcccccccCCCCC----eEecCC-----CccccHHHHHHHhhcC--------CCCcccccccc
Q 020171 269 DSGKECVICLSEPRDT----TVLPCR-----HMCMCSECAKVLQFQT--------NRCPICRQPVE 317 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~----v~lPCg-----H~c~C~~Ca~~l~~~~--------~~CPiCR~~I~ 317 (330)
+.++.|-||+....|- =+-||+ |. .+..|+..|...+ -.||-|+....
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KW-VHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKW-VHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHH-HHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 5678999999877662 466887 44 7889999985432 35999987543
No 110
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.33 E-value=1.3 Score=46.68 Aligned_cols=37 Identities=32% Similarity=0.720 Sum_probs=29.4
Q ss_pred CCcccccccCC----CCCeEecCCCccccHHHHHHHhhcCCCCc
Q 020171 271 GKECVICLSEP----RDTTVLPCRHMCMCSECAKVLQFQTNRCP 310 (330)
Q Consensus 271 ~~~C~ICl~~~----~d~v~lPCgH~c~C~~Ca~~l~~~~~~CP 310 (330)
-..|.||+..+ ...+.|-|||. .|..|++.+-. ..||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn--~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYN--ASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhh--ccCC
Confidence 35799998654 45788899999 99999998853 4677
No 111
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.26 E-value=1.6 Score=38.51 Aligned_cols=22 Identities=50% Similarity=0.993 Sum_probs=16.5
Q ss_pred CCCCcccccccCCC--C-CeEecCC
Q 020171 269 DSGKECVICLSEPR--D-TTVLPCR 290 (330)
Q Consensus 269 ~~~~~C~ICl~~~~--d-~v~lPCg 290 (330)
++..||+|||++.. | +.-|||-
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCL 199 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCL 199 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceE
Confidence 55679999999754 3 5678884
No 112
>PHA01732 proline-rich protein
Probab=69.29 E-value=7.4 Score=30.74 Aligned_cols=6 Identities=33% Similarity=0.678 Sum_probs=2.7
Q ss_pred ceEEEe
Q 020171 106 TLRVEP 111 (330)
Q Consensus 106 SLrl~~ 111 (330)
|||+..
T Consensus 66 sLrIpk 71 (94)
T PHA01732 66 SLRIPK 71 (94)
T ss_pred eeEeec
Confidence 444444
No 113
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=68.74 E-value=4.7 Score=43.68 Aligned_cols=55 Identities=25% Similarity=0.533 Sum_probs=39.9
Q ss_pred CCCCcccccccCC--CCCeEecCCCcc----ccHHHHHHHhhc--CCCCccccccccCeEEEEc
Q 020171 269 DSGKECVICLSEP--RDTTVLPCRHMC----MCSECAKVLQFQ--TNRCPICRQPVERLLEIKV 324 (330)
Q Consensus 269 ~~~~~C~ICl~~~--~d~v~lPCgH~c----~C~~Ca~~l~~~--~~~CPiCR~~I~~~l~i~~ 324 (330)
+++..|.||..+. -|..+-||+..- ++.+|+-+|..- ..+|=+|..+++ +.+|+.
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~-Fk~IY~ 72 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK-FKDIYK 72 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee-eeeecc
Confidence 4568899999774 468999998432 678999999764 367999987653 444443
No 114
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.48 E-value=6 Score=37.31 Aligned_cols=57 Identities=16% Similarity=0.231 Sum_probs=42.8
Q ss_pred CCCCcccccccCC----CCCeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEEEcCCCC
Q 020171 269 DSGKECVICLSEP----RDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNNAA 328 (330)
Q Consensus 269 ~~~~~C~ICl~~~----~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i~~~~~~ 328 (330)
.....|.|---+. +-..+..|||+ |-..-++.+. ...|++|-+.+..--.|.+|.++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV-~SerAlKeik--as~C~~C~a~y~~~dvIvlNg~~ 169 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCV-FSERALKEIK--ASVCHVCGAAYQEDDVIVLNGTE 169 (293)
T ss_pred cceeecccccceecceEEEEEEecccee-ccHHHHHHhh--hccccccCCcccccCeEeeCCCH
Confidence 4456788765443 44789999999 8877777653 57899999999888888777764
No 115
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=68.07 E-value=3.4 Score=44.86 Aligned_cols=45 Identities=29% Similarity=0.720 Sum_probs=34.6
Q ss_pred CCCCcccccccCCCC-CeEecCC---CccccHHHHHHHhhcC-------CCCccccc
Q 020171 269 DSGKECVICLSEPRD-TTVLPCR---HMCMCSECAKVLQFQT-------NRCPICRQ 314 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d-~v~lPCg---H~c~C~~Ca~~l~~~~-------~~CPiCR~ 314 (330)
....+|.||++.... .-++.|+ |+ |...|++.|..+. -+||-|+.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhV-FHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHV-FHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhh-hhHHHHHHHHHHhhhccCccccCCcccc
Confidence 456799999998764 3456665 99 9999999996542 36999974
No 116
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=67.47 E-value=3 Score=39.88 Aligned_cols=41 Identities=37% Similarity=0.768 Sum_probs=34.9
Q ss_pred cccccccC----CCCCeEecCCCccccHHHHHHHhhcCCCCccccc
Q 020171 273 ECVICLSE----PRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQ 314 (330)
Q Consensus 273 ~C~ICl~~----~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~ 314 (330)
.|.||.+. ..++.+++|||. +...|........-+||+|-.
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~-~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHY-MHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCchhHHHhccccccCCccCcccc-hHHHHHHHHhccCCCCCcccc
Confidence 39999875 456899999999 999999988777788999977
No 117
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=67.30 E-value=65 Score=31.59 Aligned_cols=31 Identities=23% Similarity=0.726 Sum_probs=27.2
Q ss_pred CCCcccccccCCCCCeEecCC--CccccHHHHHH
Q 020171 270 SGKECVICLSEPRDTTVLPCR--HMCMCSECAKV 301 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~v~lPCg--H~c~C~~Ca~~ 301 (330)
....|..|-+....+.+++|. |+ .|.+|-..
T Consensus 220 ~ni~C~~Ctdv~~~vlvf~Cns~Hv-tC~dCFr~ 252 (446)
T KOG0006|consen 220 RNITCITCTDVRSPVLVFQCNSRHV-TCLDCFRL 252 (446)
T ss_pred ccceeEEecCCccceEEEecCCcee-ehHHhhhh
Confidence 456899999999999999999 99 99999764
No 118
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=64.06 E-value=7.7 Score=40.06 Aligned_cols=9 Identities=22% Similarity=0.261 Sum_probs=4.5
Q ss_pred cCcceEEEe
Q 020171 103 KKETLRVEP 111 (330)
Q Consensus 103 ~K~SLrl~~ 111 (330)
+|.+|||..
T Consensus 281 ~r~~~KL~W 289 (817)
T KOG1925|consen 281 KRKTVKLFW 289 (817)
T ss_pred cCceeEEEe
Confidence 445555543
No 119
>PLN02189 cellulose synthase
Probab=63.80 E-value=5 Score=44.73 Aligned_cols=51 Identities=29% Similarity=0.692 Sum_probs=35.5
Q ss_pred CCCCcccccccCCC----CCeEecCCCcc---ccHHHHHHHhhc-CCCCccccccccCeE
Q 020171 269 DSGKECVICLSEPR----DTTVLPCRHMC---MCSECAKVLQFQ-TNRCPICRQPVERLL 320 (330)
Q Consensus 269 ~~~~~C~ICl~~~~----d~v~lPCgH~c---~C~~Ca~~l~~~-~~~CPiCR~~I~~~l 320 (330)
-++..|.||-++.- .-.+..|. -| .|..|.+-=++. +..||-|+....+..
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~-~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACN-ECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeec-cCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 34568999998743 22555554 33 899998765554 467999999887543
No 120
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=62.55 E-value=1.6 Score=41.71 Aligned_cols=54 Identities=26% Similarity=0.440 Sum_probs=28.6
Q ss_pred CCCCcccccccCCCCCeEecC-----CCccccHHHHHHHhhcCCCCccccccccCeEEEE
Q 020171 269 DSGKECVICLSEPRDTTVLPC-----RHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 323 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPC-----gH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i~ 323 (330)
.....|.||=+.+.-.++..= ||+ .|.-|...|+....+||.|-..-...+..+
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 345799999998876655553 677 999999999998899999987766655543
No 121
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=62.42 E-value=6.6 Score=44.27 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=4.1
Q ss_pred CCceEEEEEee
Q 020171 129 APGSITVAFFG 139 (330)
Q Consensus 129 ~~~~iti~~~a 139 (330)
+++.|.=.|+|
T Consensus 155 ~prviep~~~a 165 (2365)
T COG5178 155 VPRVIEPQLFA 165 (2365)
T ss_pred CccccCcceee
Confidence 33333333333
No 122
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=62.21 E-value=3.5 Score=39.99 Aligned_cols=45 Identities=29% Similarity=0.570 Sum_probs=35.2
Q ss_pred CCCcccccccCCCCCeEec------CCCccccHHHHHHHhhcCCCCcccccc
Q 020171 270 SGKECVICLSEPRDTTVLP------CRHMCMCSECAKVLQFQTNRCPICRQP 315 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~v~lP------CgH~c~C~~Ca~~l~~~~~~CPiCR~~ 315 (330)
....|.||=+.+.-.++.- =||+ .|.-|...|.....+|+.|-..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL-~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYL-SCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEE-EcCCCCCcccccCccCCCCCCC
Confidence 4458999999886543332 2466 9999999999988999999875
No 123
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.53 E-value=7.8 Score=38.69 Aligned_cols=44 Identities=20% Similarity=0.481 Sum_probs=32.8
Q ss_pred CcccccccCCCC---CeEecCCCccccHHHHHHHhhcCC---CCccccccc
Q 020171 272 KECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQTN---RCPICRQPV 316 (330)
Q Consensus 272 ~~C~ICl~~~~d---~v~lPCgH~c~C~~Ca~~l~~~~~---~CPiCR~~I 316 (330)
..|.|=.+...+ .+.|.|||+ .|.+=+..|..... +||-|-...
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eecccchhhccCCCCCeeeeccce-ecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 467776655443 689999999 99999999876644 799995543
No 124
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.52 E-value=3 Score=45.25 Aligned_cols=47 Identities=17% Similarity=0.544 Sum_probs=37.0
Q ss_pred CcccccccCCC-CCeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEE
Q 020171 272 KECVICLSEPR-DTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 322 (330)
Q Consensus 272 ~~C~ICl~~~~-d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i 322 (330)
..|.+|-..-. -+|..-|||. ++..|+. .....||-|+...+..+++
T Consensus 841 skCs~C~~~LdlP~VhF~CgHs-yHqhC~e---~~~~~CP~C~~e~~~~m~l 888 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHS-YHQHCLE---DKEDKCPKCLPELRGVMDL 888 (933)
T ss_pred eeecccCCccccceeeeecccH-HHHHhhc---cCcccCCccchhhhhhHHH
Confidence 47999987644 4688899999 9999998 3347899999976666554
No 125
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.57 E-value=4.4 Score=40.52 Aligned_cols=32 Identities=38% Similarity=0.851 Sum_probs=23.5
Q ss_pred CCCcccccccCCCC----CeEecCCCccccHHHHHHH
Q 020171 270 SGKECVICLSEPRD----TTVLPCRHMCMCSECAKVL 302 (330)
Q Consensus 270 ~~~~C~ICl~~~~d----~v~lPCgH~c~C~~Ca~~l 302 (330)
...+|.||+.+... ..++-|+|. ||.+|.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~-fC~~C~k~~ 180 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHR-FCKDCVKQH 180 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccch-hhhHHhHHH
Confidence 45789999944332 235679999 999998853
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=52.61 E-value=11 Score=36.94 Aligned_cols=46 Identities=39% Similarity=0.899 Sum_probs=36.1
Q ss_pred CcccccccCC--CCCeEec--CCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 272 KECVICLSEP--RDTTVLP--CRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 272 ~~C~ICl~~~--~d~v~lP--CgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
..|.||.+.. .|-.++| |++. +|..|.........+|++||.+...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCcccc
Confidence 6899999854 3444555 7888 9999999887777899999977654
No 127
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=51.66 E-value=88 Score=29.52 Aligned_cols=12 Identities=0% Similarity=0.135 Sum_probs=5.7
Q ss_pred cccCCchHhhHH
Q 020171 230 KEEGGFHVQVIK 241 (330)
Q Consensus 230 ~~~~~~~~~v~k 241 (330)
+.|+++++...|
T Consensus 317 hpdedisleerr 328 (341)
T KOG2893|consen 317 HPDEDISLEERR 328 (341)
T ss_pred CCcccccHHHHh
Confidence 345555544433
No 128
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.14 E-value=2.4 Score=40.33 Aligned_cols=45 Identities=31% Similarity=0.658 Sum_probs=35.0
Q ss_pred CCCcccccccCCC-C-----CeEec--------CCCccccHHHHHHHhhcC-CCCcccccc
Q 020171 270 SGKECVICLSEPR-D-----TTVLP--------CRHMCMCSECAKVLQFQT-NRCPICRQP 315 (330)
Q Consensus 270 ~~~~C~ICl~~~~-d-----~v~lP--------CgH~c~C~~Ca~~l~~~~-~~CPiCR~~ 315 (330)
...+|-||..... + ..++. |+|. +|.+|+.....+. ..||.||..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~ht-lc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHT-LCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHH-HHhcchHHHHHHhhhcCCcccce
Confidence 3467999997665 2 35666 9999 9999999876654 589999874
No 129
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.44 E-value=12 Score=35.29 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=29.3
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHH
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVL 302 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l 302 (330)
..-..|..||.-.+|.++.+=||+ ||.+|+-..
T Consensus 41 K~FdcCsLtLqPc~dPvit~~Gyl-fdrEaILe~ 73 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDPVITPDGYL-FDREAILEY 73 (303)
T ss_pred CCcceeeeecccccCCccCCCCee-eeHHHHHHH
Confidence 345689999999999999999999 999998763
No 130
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=48.27 E-value=10 Score=40.93 Aligned_cols=37 Identities=24% Similarity=0.509 Sum_probs=27.7
Q ss_pred cccccccCCC--CCeEecCCCccccHHHHHHHhhcCCCCc
Q 020171 273 ECVICLSEPR--DTTVLPCRHMCMCSECAKVLQFQTNRCP 310 (330)
Q Consensus 273 ~C~ICl~~~~--d~v~lPCgH~c~C~~Ca~~l~~~~~~CP 310 (330)
.|.||--..+ ..+..-|+|. ++..|+..|+.....||
T Consensus 1030 ~C~~C~l~V~gss~~Cg~C~Hv-~H~sc~~eWf~~gd~Cp 1068 (1081)
T KOG0309|consen 1030 QCAICHLAVRGSSNFCGTCGHV-GHTSCMMEWFRTGDVCP 1068 (1081)
T ss_pred eeeeEeeEeeccchhhcccccc-ccHHHHHHHHhcCCcCC
Confidence 3555544333 2467789999 99999999998887777
No 131
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.23 E-value=12 Score=38.11 Aligned_cols=50 Identities=22% Similarity=0.398 Sum_probs=36.9
Q ss_pred CCCCcccccccCCCC-CeEecCCCccccHHHHHHHhhcC--------CCC--ccccccccCe
Q 020171 269 DSGKECVICLSEPRD-TTVLPCRHMCMCSECAKVLQFQT--------NRC--PICRQPVERL 319 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d-~v~lPCgH~c~C~~Ca~~l~~~~--------~~C--PiCR~~I~~~ 319 (330)
....+|-||.+...+ ++.+.|+|. ||..|......++ .+| .-|++.+...
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~-~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~ 128 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHP-FCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGED 128 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcH-HHHHHHHHHhhheeeccccccccCCCCCccccCCCc
Confidence 445789999999885 899999999 9999988743321 234 4577777643
No 132
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=47.15 E-value=9.1 Score=37.22 Aligned_cols=45 Identities=24% Similarity=0.529 Sum_probs=35.2
Q ss_pred CCCCcccccccCCCCCeEec-----CCCccccHHHHHHHhhcCCCCccccc
Q 020171 269 DSGKECVICLSEPRDTTVLP-----CRHMCMCSECAKVLQFQTNRCPICRQ 314 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lP-----CgH~c~C~~Ca~~l~~~~~~CPiCR~ 314 (330)
+....|.||=+.+.-.++.. =||+ .|.-|...|.....+|+.|-.
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL-~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYL-HCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEE-EcCCCCCcccccCccCCCCCC
Confidence 35679999999876543321 2466 999999999998899999976
No 133
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=46.51 E-value=19 Score=27.95 Aligned_cols=48 Identities=23% Similarity=0.604 Sum_probs=19.4
Q ss_pred CCCcccccccCCCC----CeEe---cCCCccccHHHHHHHhhc-CCCCccccccccC
Q 020171 270 SGKECVICLSEPRD----TTVL---PCRHMCMCSECAKVLQFQ-TNRCPICRQPVER 318 (330)
Q Consensus 270 ~~~~C~ICl~~~~d----~v~l---PCgH~c~C~~Ca~~l~~~-~~~CPiCR~~I~~ 318 (330)
++..|.||=+..-. -+|. -|+-- .|..|.+-=++. +..||-|+....+
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fP-vCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFP-VCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCc-cchhHHHHHhhcCcccccccCCCccc
Confidence 46789999876432 1343 44544 799998865554 4679999987754
No 134
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=43.85 E-value=6.9 Score=27.52 Aligned_cols=43 Identities=28% Similarity=0.678 Sum_probs=18.6
Q ss_pred CcccccccCCCCC-eEecCCCccccHHHHHHHhh--cC--CCCcccccc
Q 020171 272 KECVICLSEPRDT-TVLPCRHMCMCSECAKVLQF--QT--NRCPICRQP 315 (330)
Q Consensus 272 ~~C~ICl~~~~d~-v~lPCgH~c~C~~Ca~~l~~--~~--~~CPiCR~~ 315 (330)
..|.|.+...+.. .-.-|.|+ -|++=..-+.. ++ =+||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~-~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHL-QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCccc-ceECHHHHHHHhhccCCeECcCCcCc
Confidence 4577877777664 45569999 56544333222 12 359999763
No 135
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=43.53 E-value=27 Score=23.72 Aligned_cols=23 Identities=26% Similarity=0.726 Sum_probs=13.0
Q ss_pred CCCccccHHHHHHHhhcCC--CCccc
Q 020171 289 CRHMCMCSECAKVLQFQTN--RCPIC 312 (330)
Q Consensus 289 CgH~c~C~~Ca~~l~~~~~--~CPiC 312 (330)
|+=. +...|++.++.... +||.|
T Consensus 19 C~~r-~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 19 CNVR-LHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp S--E-E-HHHHHHHTTT-SS-B-TTT
T ss_pred cCch-HHHHHHHHHHhcCCCCCCcCC
Confidence 4434 77799998755543 69987
No 136
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.60 E-value=2.8 Score=44.67 Aligned_cols=52 Identities=19% Similarity=0.507 Sum_probs=37.9
Q ss_pred CCCCCCccccccc-CCCCCeEecCCCccccHHHHHHHh--hcCCCCccccccccCeE
Q 020171 267 ETDSGKECVICLS-EPRDTTVLPCRHMCMCSECAKVLQ--FQTNRCPICRQPVERLL 320 (330)
Q Consensus 267 ~d~~~~~C~ICl~-~~~d~v~lPCgH~c~C~~Ca~~l~--~~~~~CPiCR~~I~~~l 320 (330)
.++.+..|+||++ ...-+.+..|.|. +|..|....+ +....|++| ..+..+.
T Consensus 74 ~~~~e~~~~if~~d~~~y~~~~~~~~~-~C~~C~~~~~~~~~~~~~~~c-~~~~s~~ 128 (669)
T KOG2231|consen 74 FDEHEDTCVIFFADKLTYTKLEACLHH-SCHICDRRFRALYNKKECLHC-TEFKSVE 128 (669)
T ss_pred cccccceeeeeeccccHHHHHHHHHhh-hcCccccchhhhcccCCCccc-cchhHHH
Confidence 3466778999954 4555788899998 9999988763 345679999 6655543
No 137
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.58 E-value=15 Score=40.24 Aligned_cols=32 Identities=22% Similarity=0.509 Sum_probs=25.9
Q ss_pred CCCCcccccccCC--CCCeEecCCCccccHHHHHH
Q 020171 269 DSGKECVICLSEP--RDTTVLPCRHMCMCSECAKV 301 (330)
Q Consensus 269 ~~~~~C~ICl~~~--~d~v~lPCgH~c~C~~Ca~~ 301 (330)
+-++.|-+|.-.. +-..+.||||. |+++|+..
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~-FH~~Cl~~ 848 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHC-FHRDCLIR 848 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccch-HHHHHHHH
Confidence 5567899998754 34688899999 99999765
No 138
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=41.00 E-value=19 Score=33.94 Aligned_cols=49 Identities=24% Similarity=0.485 Sum_probs=35.7
Q ss_pred CCCcccccccCCCC----CeEecCCCcc----ccHHHHHHHhh--cCCCCccccccccC
Q 020171 270 SGKECVICLSEPRD----TTVLPCRHMC----MCSECAKVLQF--QTNRCPICRQPVER 318 (330)
Q Consensus 270 ~~~~C~ICl~~~~d----~v~lPCgH~c----~C~~Ca~~l~~--~~~~CPiCR~~I~~ 318 (330)
++..|-||..+... .++.||.-.- ....|+..|.. .+..|-+|......
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 35789999986543 4688987321 47899999987 45679999775544
No 139
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=38.21 E-value=27 Score=25.43 Aligned_cols=22 Identities=27% Similarity=0.868 Sum_probs=17.9
Q ss_pred ccHHHHHHHhhcCCCCcccccccc
Q 020171 294 MCSECAKVLQFQTNRCPICRQPVE 317 (330)
Q Consensus 294 ~C~~Ca~~l~~~~~~CPiCR~~I~ 317 (330)
||..|++.++ .+.||-|-..+.
T Consensus 31 FC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 31 FCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred ccHHHHHHHh--cCcCcCCCCccc
Confidence 9999999875 478999977653
No 140
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=37.51 E-value=6 Score=23.38 Aligned_cols=23 Identities=26% Similarity=0.834 Sum_probs=13.4
Q ss_pred ccHHHHHHHhhcCCCCccccccc
Q 020171 294 MCSECAKVLQFQTNRCPICRQPV 316 (330)
Q Consensus 294 ~C~~Ca~~l~~~~~~CPiCR~~I 316 (330)
+|..|-..+....+.|+.|-+.|
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCcC
Confidence 35556555555556677776543
No 141
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=34.30 E-value=12 Score=26.38 Aligned_cols=12 Identities=33% Similarity=1.237 Sum_probs=6.1
Q ss_pred CCCccccccccC
Q 020171 307 NRCPICRQPVER 318 (330)
Q Consensus 307 ~~CPiCR~~I~~ 318 (330)
..||+|.+.+..
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 489999988753
No 142
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=33.84 E-value=1.6e+02 Score=22.37 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=22.0
Q ss_pred EEEEEeecCCCceEEEEEeeeecCccceecc
Q 020171 120 LVAFTFDAAAPGSITVAFFGKEDVDCTLIAT 150 (330)
Q Consensus 120 ~v~FtFDA~~~~~iti~~~a~E~~~~~~~~~ 150 (330)
.|.|.|.+..+|.+.|+....++.-..+.++
T Consensus 8 ~v~~~~~~~~~~Yl~l~~~~~~G~v~~L~Pn 38 (83)
T PF14326_consen 8 RVRFRVTSNRDGYLYLFYIDADGKVTLLFPN 38 (83)
T ss_pred EEEEEEEeCCCeEEEEEEECCCCCEEEEecC
Confidence 4678888888889888888666644444443
No 143
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=33.40 E-value=26 Score=24.97 Aligned_cols=25 Identities=24% Similarity=0.851 Sum_probs=14.8
Q ss_pred cCCCccccHHHHHHHhhcCCCCcccc
Q 020171 288 PCRHMCMCSECAKVLQFQTNRCPICR 313 (330)
Q Consensus 288 PCgH~c~C~~Ca~~l~~~~~~CPiCR 313 (330)
-|++. ||.+|-.-+-.+-..||-|-
T Consensus 26 ~C~~~-FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNH-FCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT---B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCc-cccCcChhhhccccCCcCCC
Confidence 46777 99999765544557899984
No 144
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=32.32 E-value=93 Score=37.30 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=3.3
Q ss_pred CcceEEE
Q 020171 219 NSQITMA 225 (330)
Q Consensus 219 ~~q~t~a 225 (330)
++|+++.
T Consensus 1915 QAQLiyq 1921 (2039)
T PRK15319 1915 QAQVVWQ 1921 (2039)
T ss_pred EEEEEEE
Confidence 4455443
No 145
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=31.91 E-value=37 Score=36.83 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=33.6
Q ss_pred CCcccccccCCCCCeEec--CCCccccHHHHHHHhhcCCCCcc
Q 020171 271 GKECVICLSEPRDTTVLP--CRHMCMCSECAKVLQFQTNRCPI 311 (330)
Q Consensus 271 ~~~C~ICl~~~~d~v~lP--CgH~c~C~~Ca~~l~~~~~~CPi 311 (330)
...|++|-.-.+-+.+.. |+|. .+.+|+..|...++.|+.
T Consensus 779 ~~~CtVC~~vi~G~~~~c~~C~H~-gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIRGVDVWCQVCGHG-GHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hcCceeecceeeeeEeeccccccc-ccHHHHHHHHhcCCCCcc
Confidence 347999988887776665 9999 999999999998888877
No 146
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=30.89 E-value=44 Score=23.21 Aligned_cols=31 Identities=26% Similarity=0.658 Sum_probs=23.6
Q ss_pred cccccccCCCCCeEecCCCccccHHHHHHHhhc
Q 020171 273 ECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ 305 (330)
Q Consensus 273 ~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~ 305 (330)
.|.||-....+- +.=.+++ .|.+|...+...
T Consensus 1 ~CiiC~~~~~~G-I~I~~~f-IC~~CE~~iv~~ 31 (46)
T PF10764_consen 1 KCIICGKEKEEG-IHIYGKF-ICSDCEKEIVNT 31 (46)
T ss_pred CeEeCCCcCCCC-EEEECeE-ehHHHHHHhccC
Confidence 389998887774 4447888 999999987543
No 147
>PF09244 DUF1964: Domain of unknown function (DUF1964); InterPro: IPR015325 This domain is C-terminal to the catalytic sucrose phosphorylase beta/alpha barrel domain. It adopts a beta-sandwich fold, with Greek-key topology and is functionally uncharacterised []. ; PDB: 1R7A_B 2GDU_A 2GDV_A.
Probab=30.87 E-value=61 Score=24.09 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=16.8
Q ss_pred EEEeecCCCceEEEEEeeeec
Q 020171 122 AFTFDAAAPGSITVAFFGKED 142 (330)
Q Consensus 122 ~FtFDA~~~~~iti~~~a~E~ 142 (330)
+|+|.++-+-+|+.-|-+.+.
T Consensus 5 ~FSy~~dgdtSitf~W~g~~t 25 (68)
T PF09244_consen 5 EFSYEADGDTSITFTWTGATT 25 (68)
T ss_dssp EEEEEEETTTEEEEEEE-SS-
T ss_pred eeeEecCCCcEEEEEEecccc
Confidence 799999999999999976654
No 148
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=30.54 E-value=36 Score=33.71 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=11.9
Q ss_pred CCCCcccccccCCCC
Q 020171 269 DSGKECVICLSEPRD 283 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d 283 (330)
+.+.+|.+|-++..-
T Consensus 13 dl~ElCPVCGDkVSG 27 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSG 27 (475)
T ss_pred ccccccccccCcccc
Confidence 456789999998775
No 149
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.31 E-value=27 Score=29.63 Aligned_cols=26 Identities=27% Similarity=0.796 Sum_probs=19.6
Q ss_pred ccHHHHHHHhhcCCCCccccccccCeEEE
Q 020171 294 MCSECAKVLQFQTNRCPICRQPVERLLEI 322 (330)
Q Consensus 294 ~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i 322 (330)
||+.|-..-. ..||+|.++|..-..+
T Consensus 30 fcskcgeati---~qcp~csasirgd~~v 55 (160)
T COG4306 30 FCSKCGEATI---TQCPICSASIRGDYYV 55 (160)
T ss_pred HHhhhchHHH---hcCCccCCccccccee
Confidence 8999966532 4799999999875544
No 150
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=28.13 E-value=1.4e+02 Score=23.05 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=21.3
Q ss_pred CCCCeEEEEEEeecCCCceEEEEEeeeec
Q 020171 114 ENPGQFLVAFTFDAAAPGSITVAFFGKED 142 (330)
Q Consensus 114 ~~~~~~~v~FtFDA~~~~~iti~~~a~E~ 142 (330)
.+.|.|.++|+=.......|.|.|....-
T Consensus 53 ~~dGty~v~y~P~~~G~~~i~V~~~g~~I 81 (93)
T smart00557 53 NGDGTYTVSYTPTEPGDYTVTVKFGGEHI 81 (93)
T ss_pred CCCCEEEEEEEeCCCEeEEEEEEECCEEC
Confidence 44478988888888878888888865443
No 151
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=27.90 E-value=31 Score=27.52 Aligned_cols=38 Identities=21% Similarity=0.610 Sum_probs=27.9
Q ss_pred CCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 271 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 271 ~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
...|.||-...-.. +|. +|..||-. ...|.||-..|..
T Consensus 44 ~~~C~~CK~~v~q~-----g~~-YCq~CAYk----kGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAK-YCQTCAYK----KGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCc-cChhhhcc----cCcccccCCeecc
Confidence 45799998764432 555 89999764 4789999887743
No 152
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=26.85 E-value=40 Score=27.26 Aligned_cols=25 Identities=32% Similarity=0.906 Sum_probs=17.8
Q ss_pred ccHHHHHHHhhc----CCCCccccccccC
Q 020171 294 MCSECAKVLQFQ----TNRCPICRQPVER 318 (330)
Q Consensus 294 ~C~~Ca~~l~~~----~~~CPiCR~~I~~ 318 (330)
+|.-|...|... ...||.|++++.-
T Consensus 64 iCGvC~~~LT~~EY~~~~~Cp~C~spFNp 92 (105)
T COG4357 64 ICGVCRKLLTRAEYGMCGSCPYCQSPFNP 92 (105)
T ss_pred EhhhhhhhhhHHHHhhcCCCCCcCCCCCc
Confidence 567776666432 4679999999864
No 153
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=25.25 E-value=40 Score=32.42 Aligned_cols=64 Identities=27% Similarity=0.446 Sum_probs=43.5
Q ss_pred eeeeehhhhcCCCCCCCCCCCCCCcccccccCCCCCeEecC------CCccccHHHHHHHhhcCCCCccccc
Q 020171 249 VRYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPC------RHMCMCSECAKVLQFQTNRCPICRQ 314 (330)
Q Consensus 249 ~~y~l~e~~g~~~~~~~~~d~~~~~C~ICl~~~~d~v~lPC------gH~c~C~~Ca~~l~~~~~~CPiCR~ 314 (330)
..|.++...|+..+...+. +.-..|.+|=+.+...++.-= |-+ -|.-|+..|..-..+|-.|-+
T Consensus 164 ~lyw~q~a~~i~~~~~~e~-e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL-~CslC~teW~~VR~KC~nC~~ 233 (308)
T COG3058 164 SLYWAQMAQGIPGKARVEN-ESRQYCPVCGSMPVASMVQIGETEQGLRYL-HCSLCETEWHYVRVKCSNCEQ 233 (308)
T ss_pred HHHHHHHHhcCCccccccc-cccccCCCcCCCCcceeeeecCccccchhh-hhhhHHHHHHHHHHHhccccc
Confidence 3455566666655544333 455689999999876544332 233 699999999777788999965
No 154
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=24.72 E-value=18 Score=22.03 Aligned_cols=21 Identities=29% Similarity=0.735 Sum_probs=11.6
Q ss_pred cHHHHHHHhhcCCCCcccccc
Q 020171 295 CSECAKVLQFQTNRCPICRQP 315 (330)
Q Consensus 295 C~~Ca~~l~~~~~~CPiCR~~ 315 (330)
|-+|...+......||.|--.
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGYD 23 (26)
T ss_pred CCCCcCCchhhcCcCCCCCCC
Confidence 445555555555667776443
No 155
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=23.64 E-value=1.3e+02 Score=22.34 Aligned_cols=30 Identities=27% Similarity=0.583 Sum_probs=20.3
Q ss_pred eccCcceEEEeCCCCCCeEE--EEEEeecCCCce
Q 020171 101 NVKKETLRVEPDEENPGQFL--VAFTFDAAAPGS 132 (330)
Q Consensus 101 Nl~K~SLrl~~~~~~~~~~~--v~FtFDA~~~~~ 132 (330)
.|.++++.|..++.. .|. -+|.||++.+|.
T Consensus 11 ~id~~~~titLdDGk--sy~lp~ef~~~~L~~G~ 42 (61)
T PF07076_consen 11 SIDPETMTITLDDGK--SYKLPEEFDFDGLKPGM 42 (61)
T ss_pred EEcCCceEEEecCCC--EEECCCcccccccCCCC
Confidence 356666666666543 455 478888888886
No 156
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.31 E-value=36 Score=35.48 Aligned_cols=47 Identities=23% Similarity=0.655 Sum_probs=33.5
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccCeE
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLL 320 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l 320 (330)
+....|.||+... ...+.+|.|. .|...|......||.|+..+..-.
T Consensus 477 ~~~~~~~~~~~~~-~~~~~~~~~~----~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-SARITPCSHA----LCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred cccCcchHHHHHH-Hhccccccch----hHHHhhhhhccccCCCchhhhccc
Confidence 5567899999888 5566677766 555555555678999998775433
No 157
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.54 E-value=62 Score=26.86 Aligned_cols=41 Identities=20% Similarity=0.575 Sum_probs=27.9
Q ss_pred CcccccccCCCCC--------------eEecCCCccccHHHHHHHhhcCCCCcccc
Q 020171 272 KECVICLSEPRDT--------------TVLPCRHMCMCSECAKVLQFQTNRCPICR 313 (330)
Q Consensus 272 ~~C~ICl~~~~d~--------------v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR 313 (330)
..|.-|+..+.+. .---|.+. ||.+|-.-+-..-..||.|-
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNV-FCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCc-cccccchhhhhhccCCcCCC
Confidence 4577777654332 13457788 99999776655557899995
No 158
>PLN02436 cellulose synthase A
Probab=22.38 E-value=59 Score=36.80 Aligned_cols=51 Identities=25% Similarity=0.604 Sum_probs=35.1
Q ss_pred CCCCcccccccCCCC----CeEecCC---CccccHHHHHHHhhc-CCCCccccccccCeE
Q 020171 269 DSGKECVICLSEPRD----TTVLPCR---HMCMCSECAKVLQFQ-TNRCPICRQPVERLL 320 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d----~v~lPCg---H~c~C~~Ca~~l~~~-~~~CPiCR~~I~~~l 320 (330)
-.+..|.||-++.-. =.+.-|. -- .|..|.+-=+.. +..||-|++...+..
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~fp-vCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCCCc-cccchhhhhhhcCCccCcccCCchhhcc
Confidence 345689999987432 1455553 33 899998765554 467999999887543
No 159
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.10 E-value=49 Score=29.03 Aligned_cols=25 Identities=28% Similarity=0.768 Sum_probs=20.1
Q ss_pred ccHHHHHHHhhcCCCCccccccccCeEE
Q 020171 294 MCSECAKVLQFQTNRCPICRQPVERLLE 321 (330)
Q Consensus 294 ~C~~Ca~~l~~~~~~CPiCR~~I~~~l~ 321 (330)
||..|-.... ..||.|..+|..-..
T Consensus 30 fC~kCG~~tI---~~Cp~C~~~IrG~y~ 54 (158)
T PF10083_consen 30 FCSKCGAKTI---TSCPNCSTPIRGDYH 54 (158)
T ss_pred HHHHhhHHHH---HHCcCCCCCCCCcee
Confidence 9999977653 589999999987544
No 160
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.34 E-value=53 Score=32.88 Aligned_cols=41 Identities=20% Similarity=0.470 Sum_probs=27.3
Q ss_pred CCcccccccCC-----CCCeEecCCCccccHHHHHHHhhcCCCCccc
Q 020171 271 GKECVICLSEP-----RDTTVLPCRHMCMCSECAKVLQFQTNRCPIC 312 (330)
Q Consensus 271 ~~~C~ICl~~~-----~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiC 312 (330)
.+.|.+|.... .+-+.=.|||. ||+.|...|...+..|--|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~-fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQ-FCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeecccc-chhhcCcchhhCCccccCc
Confidence 46788887542 23233338999 9999998887766656444
No 161
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=20.69 E-value=6.5 Score=29.88 Aligned_cols=42 Identities=33% Similarity=0.663 Sum_probs=22.2
Q ss_pred CcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccCe
Q 020171 272 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 319 (330)
Q Consensus 272 ~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~ 319 (330)
..|..|..+....- +|. .|..|..... ....||-|.++++.+
T Consensus 2 ~~CP~C~~~L~~~~----~~~-~C~~C~~~~~-~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHY-HCEACQKDYK-KEAFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBEEEET----TEE-EETTT--EEE-EEEE-TTT-SB-EEE
T ss_pred CcCCCCCCccEEeC----CEE-ECccccccce-ecccCCCcccHHHHH
Confidence 46888887743332 666 8889987653 235799998877654
No 162
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=20.45 E-value=2.5e+02 Score=28.46 Aligned_cols=8 Identities=25% Similarity=0.671 Sum_probs=3.8
Q ss_pred Cccccccc
Q 020171 309 CPICRQPV 316 (330)
Q Consensus 309 CPiCR~~I 316 (330)
|=.|+..+
T Consensus 398 ~~~~~~~~ 405 (409)
T KOG4590|consen 398 CGACGGEH 405 (409)
T ss_pred hhhhhccc
Confidence 44455443
No 163
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=20.42 E-value=3.7e+02 Score=20.63 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=38.2
Q ss_pred CCCccccccceeeccceeccCcceEEEeCCCCC----------CeEEEEEEeecCCCceEEEEEeee
Q 020171 84 PPQYMEHQKAVTIRNDVNVKKETLRVEPDEENP----------GQFLVAFTFDAAAPGSITVAFFGK 140 (330)
Q Consensus 84 p~~~~~~q~a~~irn~VNl~K~SLrl~~~~~~~----------~~~~v~FtFDA~~~~~iti~~~a~ 140 (330)
|.+-+..-..+||++...+..+++.|-+++... +++..+|.+.+.....--.|+|+.
T Consensus 8 p~~vV~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~ 74 (94)
T cd05711 8 PSPVVPSGENVTLQCHSDIRFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYG 74 (94)
T ss_pred CCCccCCCCeEEEEEecCCCCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEE
Confidence 334455666789999888888888888854321 345667777777766666677664
No 164
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=20.28 E-value=71 Score=36.20 Aligned_cols=51 Identities=22% Similarity=0.577 Sum_probs=34.5
Q ss_pred CCCCcccccccCCCC----CeEecC---CCccccHHHHHHHhhc-CCCCccccccccCeE
Q 020171 269 DSGKECVICLSEPRD----TTVLPC---RHMCMCSECAKVLQFQ-TNRCPICRQPVERLL 320 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d----~v~lPC---gH~c~C~~Ca~~l~~~-~~~CPiCR~~I~~~l 320 (330)
-++..|.||=++.-- -.+.-| +-- .|..|.+-=++. +..||-|++...+..
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FP-VCrpCYEYEr~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCc-cccchhhhhhhcCCccCCccCCchhhhc
Confidence 355689999987432 134444 333 899998755554 467999999887544
Done!