Query 020171
Match_columns 330
No_of_seqs 299 out of 1567
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 12:52:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vje_B MDM4 protein; proto-onc 99.6 7.5E-16 2.6E-20 113.2 3.8 56 269-324 5-62 (63)
2 2vje_A E3 ubiquitin-protein li 99.6 1.7E-15 5.7E-20 111.8 3.9 56 269-324 6-63 (64)
3 2ea5_A Cell growth regulator w 99.5 2.8E-15 9.6E-20 112.0 4.4 56 268-327 12-67 (68)
4 2yho_A E3 ubiquitin-protein li 99.3 1.8E-13 6.3E-18 105.0 1.7 54 270-327 17-70 (79)
5 4ic3_A E3 ubiquitin-protein li 99.3 2.1E-13 7.3E-18 103.0 1.3 51 270-324 23-73 (74)
6 2d8t_A Dactylidin, ring finger 99.3 2.7E-12 9.3E-17 95.7 4.6 49 269-318 13-61 (71)
7 2csy_A Zinc finger protein 183 99.3 4.8E-12 1.7E-16 96.6 5.4 52 269-321 13-64 (81)
8 2ecg_A Baculoviral IAP repeat- 99.2 1.7E-12 5.7E-17 98.2 2.3 51 270-324 24-74 (75)
9 2ecn_A Ring finger protein 141 99.2 2.5E-12 8.6E-17 95.3 3.1 54 269-324 13-66 (70)
10 2djb_A Polycomb group ring fin 99.2 8.5E-12 2.9E-16 93.2 5.6 50 269-319 13-63 (72)
11 2kiz_A E3 ubiquitin-protein li 99.2 7.7E-12 2.6E-16 92.4 4.9 51 269-320 12-65 (69)
12 1chc_A Equine herpes virus-1 r 99.2 3.8E-12 1.3E-16 93.7 3.2 56 269-325 3-59 (68)
13 2ea6_A Ring finger protein 4; 99.2 8.2E-12 2.8E-16 91.7 3.7 49 269-318 13-68 (69)
14 2ect_A Ring finger protein 126 99.2 1.4E-11 4.8E-16 93.1 4.5 50 269-319 13-65 (78)
15 2xeu_A Ring finger protein 4; 99.2 9.8E-12 3.3E-16 89.9 2.6 53 270-323 2-63 (64)
16 2ep4_A Ring finger protein 24; 99.2 1.7E-11 5.8E-16 91.8 3.9 54 269-323 13-69 (74)
17 2ecm_A Ring finger and CHY zin 99.1 1.7E-11 5.9E-16 86.3 3.5 48 269-317 3-54 (55)
18 2ysl_A Tripartite motif-contai 99.1 4.4E-11 1.5E-15 89.0 5.6 49 269-318 18-69 (73)
19 1iym_A EL5; ring-H2 finger, ub 99.1 2.1E-11 7.1E-16 85.9 3.6 48 269-317 3-54 (55)
20 3ng2_A RNF4, snurf, ring finge 99.1 7.1E-12 2.4E-16 92.8 1.2 49 269-318 8-63 (71)
21 2l0b_A E3 ubiquitin-protein li 99.1 2.5E-11 8.6E-16 95.0 4.1 49 269-318 38-89 (91)
22 2ecy_A TNF receptor-associated 99.1 4.5E-11 1.5E-15 87.6 5.0 49 269-318 13-62 (66)
23 2yur_A Retinoblastoma-binding 99.1 4.1E-11 1.4E-15 90.0 4.6 49 269-318 13-64 (74)
24 1x4j_A Ring finger protein 38; 99.1 2.3E-11 8E-16 91.4 3.0 49 269-318 21-72 (75)
25 4ayc_A E3 ubiquitin-protein li 99.1 2.3E-11 8E-16 102.3 3.2 49 270-319 52-100 (138)
26 2ecw_A Tripartite motif-contai 99.1 1.7E-10 5.8E-15 87.7 5.9 49 269-318 17-71 (85)
27 2ct2_A Tripartite motif protei 99.1 1.2E-10 4.2E-15 89.5 4.9 48 269-317 13-67 (88)
28 2egp_A Tripartite motif-contai 99.0 6.9E-11 2.4E-15 89.2 2.9 49 269-318 10-65 (79)
29 2ecv_A Tripartite motif-contai 99.0 1.9E-10 6.5E-15 87.5 5.1 49 269-318 17-71 (85)
30 3ztg_A E3 ubiquitin-protein li 99.0 1.3E-10 4.5E-15 90.5 4.0 48 269-317 11-61 (92)
31 2ecj_A Tripartite motif-contai 99.0 3.3E-10 1.1E-14 80.4 5.2 43 269-312 13-58 (58)
32 3t6p_A Baculoviral IAP repeat- 99.0 6.2E-11 2.1E-15 114.4 0.8 52 269-324 293-344 (345)
33 2ysj_A Tripartite motif-contai 99.0 6.2E-10 2.1E-14 80.6 5.8 43 269-312 18-63 (63)
34 2ecl_A Ring-box protein 2; RNF 99.0 3.9E-10 1.3E-14 86.4 4.5 48 270-318 14-76 (81)
35 1t1h_A Gspef-atpub14, armadill 99.0 4.1E-10 1.4E-14 85.0 4.1 49 269-318 6-55 (78)
36 1v87_A Deltex protein 2; ring- 98.9 4.4E-10 1.5E-14 90.9 4.2 48 271-319 25-95 (114)
37 3lrq_A E3 ubiquitin-protein li 98.9 1.8E-10 6E-15 91.7 1.8 49 269-318 20-70 (100)
38 2ckl_A Polycomb group ring fin 98.9 5.1E-10 1.7E-14 89.9 4.0 49 269-318 13-62 (108)
39 4ap4_A E3 ubiquitin ligase RNF 98.9 4.6E-10 1.6E-14 92.2 3.6 57 269-326 5-70 (133)
40 2y1n_A E3 ubiquitin-protein li 98.9 5.6E-10 1.9E-14 108.9 4.8 55 270-325 331-386 (389)
41 3fl2_A E3 ubiquitin-protein li 98.9 3.5E-10 1.2E-14 93.1 2.4 49 269-318 50-99 (124)
42 2y43_A E3 ubiquitin-protein li 98.9 3.7E-10 1.3E-14 89.2 2.4 48 270-318 21-69 (99)
43 1g25_A CDK-activating kinase a 98.9 5.9E-10 2E-14 81.3 3.0 48 270-318 2-55 (65)
44 1bor_A Transcription factor PM 98.9 2.6E-10 9E-15 81.3 1.1 45 269-317 4-48 (56)
45 1e4u_A Transcriptional repress 98.9 1.1E-09 3.9E-14 83.6 4.4 55 269-324 9-68 (78)
46 1jm7_A BRCA1, breast cancer ty 98.9 9.9E-10 3.4E-14 88.2 3.5 47 271-318 21-70 (112)
47 3l11_A E3 ubiquitin-protein li 98.8 4.9E-10 1.7E-14 90.9 1.1 49 269-318 13-62 (115)
48 1z6u_A NP95-like ring finger p 98.8 1.1E-09 3.8E-14 93.6 2.9 49 270-319 77-126 (150)
49 3hct_A TNF receptor-associated 98.8 1.2E-09 4.2E-14 89.2 2.6 49 269-318 16-65 (118)
50 3dpl_R Ring-box protein 1; ubi 98.8 3.5E-09 1.2E-13 85.5 4.8 46 271-317 37-100 (106)
51 2kre_A Ubiquitin conjugation f 98.8 3.9E-09 1.3E-13 84.3 5.0 49 269-318 27-75 (100)
52 2ckl_B Ubiquitin ligase protei 98.8 2.2E-09 7.6E-14 92.5 3.4 48 270-318 53-102 (165)
53 4ap4_A E3 ubiquitin ligase RNF 98.8 2.2E-09 7.6E-14 88.0 2.7 54 269-323 70-132 (133)
54 1rmd_A RAG1; V(D)J recombinati 98.7 3.2E-09 1.1E-13 86.2 2.4 48 270-318 22-70 (116)
55 2kr4_A Ubiquitin conjugation f 98.7 1.1E-08 3.8E-13 79.1 4.9 49 269-318 12-60 (85)
56 1wgm_A Ubiquitin conjugation f 98.7 1.3E-08 4.4E-13 81.0 5.3 49 269-318 20-69 (98)
57 3knv_A TNF receptor-associated 98.6 6.5E-09 2.2E-13 87.9 1.8 47 269-316 29-76 (141)
58 2d8s_A Cellular modulator of i 98.6 1.7E-08 5.8E-13 77.4 3.6 51 269-320 13-72 (80)
59 1jm7_B BARD1, BRCA1-associated 98.6 6E-09 2.1E-13 84.9 0.4 45 270-317 21-66 (117)
60 4a0k_B E3 ubiquitin-protein li 98.6 8.4E-09 2.9E-13 84.8 0.5 46 271-317 48-111 (117)
61 2c2l_A CHIP, carboxy terminus 98.5 2.4E-08 8.3E-13 91.7 2.4 49 269-318 206-255 (281)
62 3hcs_A TNF receptor-associated 98.5 4E-08 1.4E-12 84.9 2.6 49 269-318 16-65 (170)
63 2yu4_A E3 SUMO-protein ligase 98.3 3.4E-07 1.2E-11 71.8 3.6 46 269-315 5-59 (94)
64 2f42_A STIP1 homology and U-bo 98.2 6.7E-07 2.3E-11 78.6 3.4 49 269-318 104-153 (179)
65 1vyx_A ORF K3, K3RING; zinc-bi 98.1 1.6E-06 5.6E-11 62.7 3.6 48 269-317 4-58 (60)
66 3vk6_A E3 ubiquitin-protein li 98.0 3.5E-06 1.2E-10 66.8 4.3 51 273-324 3-55 (101)
67 2ct0_A Non-SMC element 1 homol 98.0 1.1E-05 3.7E-10 60.9 6.0 49 269-318 13-64 (74)
68 3htk_C E3 SUMO-protein ligase 97.9 5E-06 1.7E-10 77.0 4.0 48 269-317 179-231 (267)
69 2bay_A PRE-mRNA splicing facto 97.9 3.8E-06 1.3E-10 60.9 2.4 47 271-318 3-50 (61)
70 1wim_A KIAA0161 protein; ring 97.9 4.1E-06 1.4E-10 65.3 2.5 45 270-315 4-61 (94)
71 3k1l_B Fancl; UBC, ring, RWD, 97.7 7.2E-06 2.5E-10 78.6 1.7 50 268-318 305-373 (381)
72 2ko5_A Ring finger protein Z; 95.8 0.0022 7.4E-08 50.1 0.8 48 272-322 29-77 (99)
73 3nw0_A Non-structural maintena 92.8 0.097 3.3E-06 47.5 4.7 48 270-318 179-229 (238)
74 2jun_A Midline-1; B-BOX, TRIM, 92.3 0.061 2.1E-06 41.6 2.3 30 271-301 3-35 (101)
75 2cs3_A Protein C14ORF4, MY039 90.2 0.25 8.4E-06 37.5 3.6 33 269-302 13-49 (93)
76 3i2d_A E3 SUMO-protein ligase 68.9 3.6 0.00012 39.5 3.9 46 270-316 248-298 (371)
77 2a20_A Regulating synaptic mem 62.9 0.41 1.4E-05 34.1 -3.0 42 269-314 7-59 (62)
78 1weo_A Cellulose synthase, cat 59.2 10 0.00035 29.1 4.0 49 269-318 14-70 (93)
79 3m62_A Ubiquitin conjugation f 53.3 8.6 0.00029 41.4 3.7 50 269-318 889-938 (968)
80 1z60_A TFIIH basal transcripti 48.8 9.6 0.00033 26.9 2.2 40 272-312 16-58 (59)
81 2d8v_A Zinc finger FYVE domain 47.1 8.1 0.00028 28.0 1.6 32 269-302 6-38 (67)
82 2lri_C Autoimmune regulator; Z 45.8 17 0.0006 25.9 3.3 46 269-315 10-59 (66)
83 3ql9_A Transcriptional regulat 40.4 22 0.00075 29.0 3.4 47 268-315 54-111 (129)
84 2fiy_A Protein FDHE homolog; F 39.0 5.7 0.0002 37.2 -0.3 49 269-319 180-234 (309)
85 4fo9_A E3 SUMO-protein ligase 34.4 20 0.00068 34.3 2.6 46 271-317 215-265 (360)
86 2zet_C Melanophilin; complex, 32.7 3.5 0.00012 34.7 -2.6 45 270-315 67-117 (153)
87 2lbm_A Transcriptional regulat 29.8 42 0.0015 27.7 3.6 47 268-315 60-117 (142)
88 3a1b_A DNA (cytosine-5)-methyl 28.1 47 0.0016 28.0 3.6 54 266-322 74-142 (159)
89 2pv0_B DNA (cytosine-5)-methyl 27.7 56 0.0019 31.5 4.5 54 267-321 89-155 (386)
90 1mm2_A MI2-beta; PHD, zinc fin 25.6 16 0.00055 25.5 0.2 48 268-316 6-57 (61)
91 1wil_A KIAA1045 protein; ring 25.2 1.2E+02 0.0043 22.9 5.1 33 269-302 13-47 (89)
92 3zyq_A Hepatocyte growth facto 25.2 63 0.0021 28.4 4.1 32 269-301 162-197 (226)
93 3u5n_A E3 ubiquitin-protein li 22.9 13 0.00043 32.4 -1.0 45 268-316 4-55 (207)
94 2k16_A Transcription initiatio 20.5 32 0.0011 24.6 1.0 50 269-318 16-71 (75)
No 1
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.58 E-value=7.5e-16 Score=113.25 Aligned_cols=56 Identities=27% Similarity=0.730 Sum_probs=51.8
Q ss_pred CCCCcccccccCCCCCeEe--cCCCccccHHHHHHHhhcCCCCccccccccCeEEEEc
Q 020171 269 DSGKECVICLSEPRDTTVL--PCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 324 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~l--PCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i~~ 324 (330)
+.+.+|.||+++.++++++ ||||+++|.+|+..|+.++.+||+||+.|.++++|++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 62 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI 62 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence 4567999999999999888 9999999999999998888899999999999999986
No 2
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.55 E-value=1.7e-15 Score=111.75 Aligned_cols=56 Identities=30% Similarity=0.768 Sum_probs=51.9
Q ss_pred CCCCcccccccCCCCCeEe--cCCCccccHHHHHHHhhcCCCCccccccccCeEEEEc
Q 020171 269 DSGKECVICLSEPRDTTVL--PCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 324 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~l--PCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i~~ 324 (330)
+++.+|+||+++.++++++ ||||+++|.+|+..|+.++.+||+||+.|..+++|++
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 63 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF 63 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEEC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeec
Confidence 3457899999999999988 9999999999999998888899999999999999986
No 3
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.8e-15 Score=111.98 Aligned_cols=56 Identities=34% Similarity=0.927 Sum_probs=50.5
Q ss_pred CCCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEEEcCCC
Q 020171 268 TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNNA 327 (330)
Q Consensus 268 d~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i~~~~~ 327 (330)
++++.+|+||+++.++++++||||+|||..|+..+ .+||+||+.|...++|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~~~~s 67 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQESFALSGPSS 67 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----SSCTTTCCCCCCEECCCSSCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----CCCCCCCcchhceEEeecCCC
Confidence 35678999999999999999999999999999965 799999999999999987653
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.34 E-value=1.8e-13 Score=104.96 Aligned_cols=54 Identities=31% Similarity=0.783 Sum_probs=49.2
Q ss_pred CCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEEEcCCC
Q 020171 270 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNNA 327 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i~~~~~ 327 (330)
++.+|.||++..++++++||||++||..|+..| ..||+||+.|...++|++..+
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~p~~ 70 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQHVYLPTH 70 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEEECBCTTC
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCeEEEEeCcc
Confidence 346899999999999999999999999999987 499999999999999988654
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.32 E-value=2.1e-13 Score=103.02 Aligned_cols=51 Identities=27% Similarity=0.773 Sum_probs=47.6
Q ss_pred CCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEEEc
Q 020171 270 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 324 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i~~ 324 (330)
++..|.||++..++++++||||.+||..|+..| .+||+||+.|...++|++
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~ 73 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKILM 73 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEEECBC
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcEEEee
Confidence 456899999999999999999999999999988 799999999999999876
No 6
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.7e-12 Score=95.66 Aligned_cols=49 Identities=35% Similarity=0.799 Sum_probs=45.2
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
.++.+|.||++...+.++++|||. ||..|+..|......||+||+.|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 566789999999999999999999 9999999998888899999999864
No 7
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.8e-12 Score=96.59 Aligned_cols=52 Identities=33% Similarity=0.671 Sum_probs=46.8
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccCeEE
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLE 321 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~ 321 (330)
++..+|.||++...+.++++|||. ||..|+..|+.....||+||+.+...+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIFN 64 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCCE
T ss_pred CCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccCC
Confidence 566799999999999999999999 9999999998888899999999875443
No 8
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.7e-12 Score=98.18 Aligned_cols=51 Identities=27% Similarity=0.765 Sum_probs=46.3
Q ss_pred CCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEEEc
Q 020171 270 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 324 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i~~ 324 (330)
++.+|.||++..++++++||||++||..|+..+ ..||+||+.|...++|++
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~ 74 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIFM 74 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecCcEEEec
Confidence 346899999999999999999999999999765 789999999999988875
No 9
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.5e-12 Score=95.31 Aligned_cols=54 Identities=31% Similarity=0.736 Sum_probs=47.8
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEEEc
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 324 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i~~ 324 (330)
+++.+|.||++...+ ++++|||. ||..|+..|......||+||+.|.....+++
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence 456789999999999 99999999 9999999998888899999999987665544
No 10
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=8.5e-12 Score=93.20 Aligned_cols=50 Identities=30% Similarity=0.611 Sum_probs=45.0
Q ss_pred CCCCcccccccCCCCCeEe-cCCCccccHHHHHHHhhcCCCCccccccccCe
Q 020171 269 DSGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVERL 319 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~l-PCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~ 319 (330)
+++..|.||++...+.+.+ +|||. ||..|+..|+..+.+||+||+.|...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 5667899999999998887 99999 99999999988888999999998653
No 11
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=7.7e-12 Score=92.38 Aligned_cols=51 Identities=37% Similarity=0.827 Sum_probs=44.2
Q ss_pred CCCCcccccccCCC---CCeEecCCCccccHHHHHHHhhcCCCCccccccccCeE
Q 020171 269 DSGKECVICLSEPR---DTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLL 320 (330)
Q Consensus 269 ~~~~~C~ICl~~~~---d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l 320 (330)
+++.+|.||++... .+++++|+|. ||..|+..|+..+.+||+||+.|...+
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 56678999988764 4688999999 999999999988889999999987654
No 12
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.22 E-value=3.8e-12 Score=93.68 Aligned_cols=56 Identities=32% Similarity=0.796 Sum_probs=48.8
Q ss_pred CCCCcccccccCCCC-CeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEEEcC
Q 020171 269 DSGKECVICLSEPRD-TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVN 325 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d-~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i~~~ 325 (330)
+++..|.||++...+ +++++|||. ||..|+..|..++.+||+||+.+..+++....
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 59 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTIES 59 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCCCS
T ss_pred CCCCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcccc
Confidence 345789999999998 489999999 99999999988889999999999987765443
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=8.2e-12 Score=91.69 Aligned_cols=49 Identities=27% Similarity=0.716 Sum_probs=43.8
Q ss_pred CCCCcccccccCCCCC-------eEecCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDT-------TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~-------v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
++..+|.||++...+. ++++|||. ||..|+..|...+..||+||+.|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 5667899999988775 89999999 9999999998888899999998864
No 14
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.18 E-value=1.4e-11 Score=93.14 Aligned_cols=50 Identities=30% Similarity=0.694 Sum_probs=43.3
Q ss_pred CCCCcccccccCCCC---CeEecCCCccccHHHHHHHhhcCCCCccccccccCe
Q 020171 269 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 319 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d---~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~ 319 (330)
+++.+|.||++...+ +++++|+|. ||..|+..|+.++.+||+||+.|...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 567899999988764 467899999 99999999998888999999998764
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.16 E-value=9.8e-12 Score=89.93 Aligned_cols=53 Identities=26% Similarity=0.646 Sum_probs=45.1
Q ss_pred CCCcccccccCCCCC-------eEecCCCccccHHHHHHHhhcCCCCccccccccC--eEEEE
Q 020171 270 SGKECVICLSEPRDT-------TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER--LLEIK 323 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~-------v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~--~l~i~ 323 (330)
++.+|.||++...+. ++++|||. ||..|+..|..++.+||+||+.+.. +.+|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 356899999988765 89999999 9999999998888899999999874 54443
No 16
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.7e-11 Score=91.76 Aligned_cols=54 Identities=24% Similarity=0.637 Sum_probs=46.2
Q ss_pred CCCCcccccccCCCC---CeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEEE
Q 020171 269 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 323 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d---~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i~ 323 (330)
+++.+|.||++...+ +++++|+|. ||..|+..|+....+||+||+.|..+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccccC
Confidence 556789999998764 456699999 999999999988889999999998876654
No 17
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.15 E-value=1.7e-11 Score=86.29 Aligned_cols=48 Identities=31% Similarity=0.805 Sum_probs=42.6
Q ss_pred CCCCcccccccCCCC----CeEecCCCccccHHHHHHHhhcCCCCcccccccc
Q 020171 269 DSGKECVICLSEPRD----TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 317 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d----~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~ 317 (330)
.++.+|.||++...+ .++++|+|. ||..|+..|.....+||+||+.|.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCC
Confidence 345789999998765 789999999 999999999888899999999875
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=4.4e-11 Score=89.05 Aligned_cols=49 Identities=24% Similarity=0.666 Sum_probs=43.2
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhh---cCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF---QTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~---~~~~CPiCR~~I~~ 318 (330)
+++..|.||++...+.++++|||. ||..|+..|.. ....||+||+.|..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 556799999999999999999999 99999999975 34589999998853
No 19
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.14 E-value=2.1e-11 Score=85.94 Aligned_cols=48 Identities=40% Similarity=0.877 Sum_probs=42.1
Q ss_pred CCCCcccccccCCCC---CeEec-CCCccccHHHHHHHhhcCCCCcccccccc
Q 020171 269 DSGKECVICLSEPRD---TTVLP-CRHMCMCSECAKVLQFQTNRCPICRQPVE 317 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d---~v~lP-CgH~c~C~~Ca~~l~~~~~~CPiCR~~I~ 317 (330)
+++.+|.||++...+ .+.++ |||. ||..|+..|...+.+||+||+.|.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 345789999999877 77887 9999 999999999988899999999763
No 20
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.14 E-value=7.1e-12 Score=92.76 Aligned_cols=49 Identities=27% Similarity=0.716 Sum_probs=43.7
Q ss_pred CCCCcccccccCCCCC-------eEecCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDT-------TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~-------v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
+++.+|.||++...+. ++++|||. ||..|+..|..++.+||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4567899999998775 89999999 9999999999888999999999863
No 21
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.13 E-value=2.5e-11 Score=94.99 Aligned_cols=49 Identities=31% Similarity=0.653 Sum_probs=43.6
Q ss_pred CCCCcccccccCCCC---CeEecCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d---~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
+++..|.||++...+ ++.++|+|. ||..|+..|+..+..||+||+.|..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 456789999998776 788999999 9999999999888999999998864
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=4.5e-11 Score=87.64 Aligned_cols=49 Identities=18% Similarity=0.537 Sum_probs=43.3
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhh-cCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF-QTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~-~~~~CPiCR~~I~~ 318 (330)
+++..|.||++..++.++++|||. ||..|+..|.. ...+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 456789999999999999999999 99999999984 45689999998864
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.12 E-value=4.1e-11 Score=90.05 Aligned_cols=49 Identities=29% Similarity=0.714 Sum_probs=43.4
Q ss_pred CCCCcccccccCCCCCeEec-CCCccccHHHHHHHhhcC--CCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLP-CRHMCMCSECAKVLQFQT--NRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lP-CgH~c~C~~Ca~~l~~~~--~~CPiCR~~I~~ 318 (330)
+++..|.||++...+.++++ |||. ||..|+..|+..+ ..||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 56678999999999999999 9999 9999999998765 689999997543
No 24
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=2.3e-11 Score=91.41 Aligned_cols=49 Identities=29% Similarity=0.702 Sum_probs=42.9
Q ss_pred CCCCcccccccCCCCC---eEecCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDT---TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~---v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
+++.+|.||++...+. ++++|+|. ||..|+..|...+.+||+||+.|..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4567899999887664 88999999 9999999999888999999998864
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.11 E-value=2.3e-11 Score=102.25 Aligned_cols=49 Identities=29% Similarity=0.676 Sum_probs=44.8
Q ss_pred CCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccCe
Q 020171 270 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 319 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~ 319 (330)
++..|.||++...++++++|||. ||..|+..|+..+..||+||+.|...
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 34679999999999999999998 99999999998889999999999764
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.06 E-value=1.7e-10 Score=87.74 Aligned_cols=49 Identities=27% Similarity=0.674 Sum_probs=43.9
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhc------CCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ------TNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~------~~~CPiCR~~I~~ 318 (330)
+++..|.||++...+.++++|||. ||..|+..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 456789999999999999999999 999999998776 5689999999864
No 27
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.2e-10 Score=89.46 Aligned_cols=48 Identities=29% Similarity=0.738 Sum_probs=42.8
Q ss_pred CCCCcccccccCCCC----CeEecCCCccccHHHHHHHhhcC---CCCcccccccc
Q 020171 269 DSGKECVICLSEPRD----TTVLPCRHMCMCSECAKVLQFQT---NRCPICRQPVE 317 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d----~v~lPCgH~c~C~~Ca~~l~~~~---~~CPiCR~~I~ 317 (330)
++..+|.||++...+ .++++|||. ||..|+..|.... .+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred cCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 566789999999998 899999999 9999999998765 78999999774
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.04 E-value=6.9e-11 Score=89.17 Aligned_cols=49 Identities=27% Similarity=0.645 Sum_probs=43.3
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhc-------CCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ-------TNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~-------~~~CPiCR~~I~~ 318 (330)
+++..|.||++...+.++++|||. ||..|+..|+.. ...||+||+.+..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 456789999999999999999999 999999998765 5689999999864
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.9e-10 Score=87.46 Aligned_cols=49 Identities=27% Similarity=0.658 Sum_probs=43.9
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhc------CCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ------TNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~------~~~CPiCR~~I~~ 318 (330)
++..+|.||++...+.++++|||. ||..|+..|... ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 556799999999999999999999 999999998766 6789999999864
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.02 E-value=1.3e-10 Score=90.48 Aligned_cols=48 Identities=29% Similarity=0.731 Sum_probs=42.5
Q ss_pred CCCCcccccccCCCCCeEec-CCCccccHHHHHHHhhcC--CCCcccccccc
Q 020171 269 DSGKECVICLSEPRDTTVLP-CRHMCMCSECAKVLQFQT--NRCPICRQPVE 317 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lP-CgH~c~C~~Ca~~l~~~~--~~CPiCR~~I~ 317 (330)
+++..|.||++...+.++++ |||. ||..|+..|+..+ ..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 56689999999999999999 9999 9999999987643 58999999873
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=3.3e-10 Score=80.37 Aligned_cols=43 Identities=23% Similarity=0.731 Sum_probs=38.1
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhh---cCCCCccc
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF---QTNRCPIC 312 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~---~~~~CPiC 312 (330)
+++..|.||++...+.++++|||. ||..|+..|+. ...+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 556789999999999999999999 99999999944 45789998
No 32
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.98 E-value=6.2e-11 Score=114.37 Aligned_cols=52 Identities=29% Similarity=0.856 Sum_probs=47.6
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccCeEEEEc
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 324 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i~~ 324 (330)
+++..|.||++...+++++||||.|||..|+..| ..||+||+.|...++|++
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~~i~~ 344 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVRTFL 344 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEEECC-
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeEEeec
Confidence 4567899999999999999999999999999987 789999999999999875
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=6.2e-10 Score=80.61 Aligned_cols=43 Identities=26% Similarity=0.685 Sum_probs=38.7
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhh---cCCCCccc
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF---QTNRCPIC 312 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~---~~~~CPiC 312 (330)
+++..|.||++...+.++++|||. ||..|+..|+. ...+||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 566799999999999999999999 99999999987 34589998
No 34
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3.9e-10 Score=86.42 Aligned_cols=48 Identities=31% Similarity=0.628 Sum_probs=39.2
Q ss_pred CCCcccccccCCCC--------------CeEec-CCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 270 SGKECVICLSEPRD--------------TTVLP-CRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 270 ~~~~C~ICl~~~~d--------------~v~lP-CgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
++..|.||++...+ .++++ |+|. ||..|+..|+.++++||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 34568888887754 45555 9999 9999999999988999999998753
No 35
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.95 E-value=4.1e-10 Score=84.97 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=44.2
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhc-CCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~-~~~CPiCR~~I~~ 318 (330)
.++..|.||++...+.++++|||. ||..|+..|+.. ..+||+||+.+..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 456799999999999999999999 999999999876 6789999999864
No 36
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.94 E-value=4.4e-10 Score=90.86 Aligned_cols=48 Identities=19% Similarity=0.534 Sum_probs=39.3
Q ss_pred CCcccccccCCCCC------------------eEecCCCccccHHHHHHHhh-----cCCCCccccccccCe
Q 020171 271 GKECVICLSEPRDT------------------TVLPCRHMCMCSECAKVLQF-----QTNRCPICRQPVERL 319 (330)
Q Consensus 271 ~~~C~ICl~~~~d~------------------v~lPCgH~c~C~~Ca~~l~~-----~~~~CPiCR~~I~~~ 319 (330)
+..|.|||+...+. .+++|+|. ||..|+..|+. ....||+||+.+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 35899999987543 28899999 99999999983 456899999988643
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.94 E-value=1.8e-10 Score=91.69 Aligned_cols=49 Identities=27% Similarity=0.716 Sum_probs=43.6
Q ss_pred CCCCcccccccCCCCCeE-ecCCCccccHHHHHHHhhcC-CCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTV-LPCRHMCMCSECAKVLQFQT-NRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~-lPCgH~c~C~~Ca~~l~~~~-~~CPiCR~~I~~ 318 (330)
+++..|.||++...+.+. ++|||. ||..|+..|+... ..||+||+.+..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 345789999999999988 999999 9999999998877 689999999843
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.92 E-value=5.1e-10 Score=89.91 Aligned_cols=49 Identities=29% Similarity=0.624 Sum_probs=44.6
Q ss_pred CCCCcccccccCCCCCeEe-cCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~l-PCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
+++..|.||++...+.+.+ +|||. ||..|+..|...+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 3467899999999999888 99999 9999999999888899999999875
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.92 E-value=4.6e-10 Score=92.19 Aligned_cols=57 Identities=25% Similarity=0.639 Sum_probs=48.2
Q ss_pred CCCCcccccccCCCCC-------eEecCCCccccHHHHHHHhhcCCCCccccccccC--eEEEEcCC
Q 020171 269 DSGKECVICLSEPRDT-------TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER--LLEIKVNN 326 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~-------v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~--~l~i~~~~ 326 (330)
.++.+|.||++...+. ++++|||. ||..|+..|+..+.+||+||+.+.. +..++++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~ 70 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGS 70 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSS
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCccccccccccCC
Confidence 3457899999998876 99999999 9999999999888999999999964 55555543
No 40
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.92 E-value=5.6e-10 Score=108.92 Aligned_cols=55 Identities=31% Similarity=0.724 Sum_probs=49.1
Q ss_pred CCCcccccccCCCCCeEecCCCccccHHHHHHHhh-cCCCCccccccccCeEEEEcC
Q 020171 270 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF-QTNRCPICRQPVERLLEIKVN 325 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~-~~~~CPiCR~~I~~~l~i~~~ 325 (330)
...+|.||++...++++++|||. ||..|+..|.. ....||+||+.|.....|.++
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v~ 386 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 386 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECSCC
T ss_pred CCCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEecC
Confidence 34689999999999999999999 99999999987 578899999999988777664
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.90 E-value=3.5e-10 Score=93.05 Aligned_cols=49 Identities=22% Similarity=0.545 Sum_probs=43.1
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcC-CCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT-NRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~-~~CPiCR~~I~~ 318 (330)
+++..|.||++...+.++++|||. ||..|+..|+... ..||+||+.+..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 345689999999999999999999 9999999987654 489999999965
No 42
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.90 E-value=3.7e-10 Score=89.23 Aligned_cols=48 Identities=25% Similarity=0.567 Sum_probs=43.6
Q ss_pred CCCcccccccCCCCCeEe-cCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 270 SGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~v~l-PCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
+...|.||++...+.+++ +|||. ||..|+..|...+..||+||+.+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 456899999999999888 89999 9999999999888899999998864
No 43
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=5.9e-10 Score=81.31 Aligned_cols=48 Identities=27% Similarity=0.769 Sum_probs=38.9
Q ss_pred CCCccccccc-CCCCC----eEecCCCccccHHHHHHHhhc-CCCCccccccccC
Q 020171 270 SGKECVICLS-EPRDT----TVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER 318 (330)
Q Consensus 270 ~~~~C~ICl~-~~~d~----v~lPCgH~c~C~~Ca~~l~~~-~~~CPiCR~~I~~ 318 (330)
++..|.||++ ...+. ++++|||. ||..|+..|+.+ ...||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3568999999 55554 57899999 999999999554 4679999999864
No 44
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=2.6e-10 Score=81.28 Aligned_cols=45 Identities=33% Similarity=0.766 Sum_probs=39.8
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCcccccccc
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 317 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~ 317 (330)
++...|.||++...+.++++|||. ||..|+..| ..+||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCc-ccHHHHccC---CCCCCcCCcEee
Confidence 456789999999999999999999 999998763 468999999875
No 45
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.88 E-value=1.1e-09 Score=83.59 Aligned_cols=55 Identities=24% Similarity=0.622 Sum_probs=43.2
Q ss_pred CCCCcccccccCC--CCCeEec--CCCccccHHHHHHHhhc-CCCCccccccccCeEEEEc
Q 020171 269 DSGKECVICLSEP--RDTTVLP--CRHMCMCSECAKVLQFQ-TNRCPICRQPVERLLEIKV 324 (330)
Q Consensus 269 ~~~~~C~ICl~~~--~d~v~lP--CgH~c~C~~Ca~~l~~~-~~~CPiCR~~I~~~l~i~~ 324 (330)
+++..|.||++.. .|.+++| |||. ||..|+..++.. ...||+||+.+..-..++.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~ 68 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDPAVYK 68 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCC
T ss_pred ccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCchhhc
Confidence 4567899999987 4567777 9999 999999987643 4679999999976444433
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=9.9e-10 Score=88.19 Aligned_cols=47 Identities=30% Similarity=0.750 Sum_probs=41.9
Q ss_pred CCcccccccCCCCCeEecCCCccccHHHHHHHhhcCC---CCccccccccC
Q 020171 271 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTN---RCPICRQPVER 318 (330)
Q Consensus 271 ~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~---~CPiCR~~I~~ 318 (330)
...|.||++...+.++++|||. ||..|+..|..... .||+||..+..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4689999999999999999999 99999999987653 89999998864
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.84 E-value=4.9e-10 Score=90.92 Aligned_cols=49 Identities=31% Similarity=0.698 Sum_probs=43.2
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhc-CCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~-~~~CPiCR~~I~~ 318 (330)
.++..|.||++...+.++++|||. ||..|+..|... ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 456789999999999999999999 999999998765 5689999998863
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.83 E-value=1.1e-09 Score=93.58 Aligned_cols=49 Identities=22% Similarity=0.502 Sum_probs=43.5
Q ss_pred CCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCC-CCccccccccCe
Q 020171 270 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTN-RCPICRQPVERL 319 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~-~CPiCR~~I~~~ 319 (330)
+...|.||++...+.++++|||. ||..|+..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45789999999999999999999 99999999987654 799999998753
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.81 E-value=1.2e-09 Score=89.19 Aligned_cols=49 Identities=29% Similarity=0.638 Sum_probs=43.8
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCC-CCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTN-RCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~-~CPiCR~~I~~ 318 (330)
+++..|.||++...+.++++|||. ||..|+..|+..+. +||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 456799999999999999999999 99999999887655 89999999865
No 50
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.80 E-value=3.5e-09 Score=85.53 Aligned_cols=46 Identities=22% Similarity=0.394 Sum_probs=38.9
Q ss_pred CCcccccccCCCC------------------CeEecCCCccccHHHHHHHhhcCCCCcccccccc
Q 020171 271 GKECVICLSEPRD------------------TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 317 (330)
Q Consensus 271 ~~~C~ICl~~~~d------------------~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~ 317 (330)
+..|.||++...+ .++++|+|. ||..|+..|+..+..||+||+.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence 3568888887654 366899999 999999999998899999999863
No 51
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.80 E-value=3.9e-09 Score=84.26 Aligned_cols=49 Identities=14% Similarity=0.061 Sum_probs=44.9
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
.+...|.||++-.+|.++++|||. ||..|+..|+....+||+||..+..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 556899999999999999999999 9999999998877899999998864
No 52
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.78 E-value=2.2e-09 Score=92.50 Aligned_cols=48 Identities=29% Similarity=0.681 Sum_probs=42.5
Q ss_pred CCCcccccccCCCCCeEe-cCCCccccHHHHHHHhhc-CCCCccccccccC
Q 020171 270 SGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQ-TNRCPICRQPVER 318 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~v~l-PCgH~c~C~~Ca~~l~~~-~~~CPiCR~~I~~ 318 (330)
+...|.||++...+.+.+ +|||. ||..|+..|+.. ...||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 456899999999998887 99999 999999999876 6789999999853
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.77 E-value=2.2e-09 Score=88.02 Aligned_cols=54 Identities=26% Similarity=0.647 Sum_probs=46.2
Q ss_pred CCCCcccccccCCCCC-------eEecCCCccccHHHHHHHhhcCCCCccccccccC--eEEEE
Q 020171 269 DSGKECVICLSEPRDT-------TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER--LLEIK 323 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~-------v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~--~l~i~ 323 (330)
++...|.||++...+. ++++|||. ||..|+..|+..+..||+||+.|.. +..++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 4567899999987764 89999999 9999999999989999999999863 55554
No 54
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.73 E-value=3.2e-09 Score=86.20 Aligned_cols=48 Identities=27% Similarity=0.570 Sum_probs=43.2
Q ss_pred CCCcccccccCCCCCeEecCCCccccHHHHHHHhhc-CCCCccccccccC
Q 020171 270 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER 318 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~-~~~CPiCR~~I~~ 318 (330)
++..|.||++...+.+.++|||. ||..|+..|+.. ...||+||+.+..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 45789999999999999999999 999999999876 6789999999864
No 55
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.71 E-value=1.1e-08 Score=79.06 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=44.9
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
.+...|.||++-.+|.++++|||. ||..|+..|+....+||+||..+..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 456899999999999999999999 9999999998877899999998854
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.71 E-value=1.3e-08 Score=80.98 Aligned_cols=49 Identities=16% Similarity=0.054 Sum_probs=44.8
Q ss_pred CCCCcccccccCCCCCeEecCC-CccccHHHHHHHhhcCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCR-HMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCg-H~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
.++..|.||++-.+|.++++|| |. ||..|+..|+....+||+||..+..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 4567999999999999999999 99 9999999998877889999998864
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.64 E-value=6.5e-09 Score=87.94 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=42.1
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCC-CCccccccc
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTN-RCPICRQPV 316 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~-~CPiCR~~I 316 (330)
+++..|.||++...+.+.++|||. ||..|+..|+.... .||+||..+
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 456789999999999999999999 99999999987654 899999975
No 58
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1.7e-08 Score=77.43 Aligned_cols=51 Identities=22% Similarity=0.495 Sum_probs=41.8
Q ss_pred CCCCcccccccCC--CCCeEecCC-----CccccHHHHHHHhhcC--CCCccccccccCeE
Q 020171 269 DSGKECVICLSEP--RDTTVLPCR-----HMCMCSECAKVLQFQT--NRCPICRQPVERLL 320 (330)
Q Consensus 269 ~~~~~C~ICl~~~--~d~v~lPCg-----H~c~C~~Ca~~l~~~~--~~CPiCR~~I~~~l 320 (330)
+++..|.||+++. .+.+++||+ |. |+..|+..|+..+ .+||+||..+.-..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 5567899999876 356889997 99 9999999998765 48999999886433
No 59
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.59 E-value=6e-09 Score=84.90 Aligned_cols=45 Identities=29% Similarity=0.665 Sum_probs=40.8
Q ss_pred CCCcccccccCCCCCeEe-cCCCccccHHHHHHHhhcCCCCcccccccc
Q 020171 270 SGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVE 317 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~v~l-PCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~ 317 (330)
+...|.||++...+.+++ +|||. ||..|+..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhc--CCCcCCCCcCc
Confidence 457899999999999999 99999 99999999865 68999999884
No 60
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.57 E-value=8.4e-09 Score=84.77 Aligned_cols=46 Identities=22% Similarity=0.394 Sum_probs=0.4
Q ss_pred CCcccccccCCCC------------------CeEecCCCccccHHHHHHHhhcCCCCcccccccc
Q 020171 271 GKECVICLSEPRD------------------TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 317 (330)
Q Consensus 271 ~~~C~ICl~~~~d------------------~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~ 317 (330)
+..|.||++...+ +++++|+|. ||..|+..|+..++.||+||+.+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCeee
Confidence 3579999988754 234699999 999999999988899999999853
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.52 E-value=2.4e-08 Score=91.67 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=43.2
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcC-CCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT-NRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~-~~CPiCR~~I~~ 318 (330)
.+...|.||++-.+|.++++|||. ||..|+..|+..+ ..||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 456789999999999999999999 9999999988764 449999999863
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.48 E-value=4e-08 Score=84.90 Aligned_cols=49 Identities=29% Similarity=0.643 Sum_probs=43.5
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcC-CCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT-NRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~-~~CPiCR~~I~~ 318 (330)
++...|.||++...+.+.++|||. ||..|+..|+..+ .+||+||..|..
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 456799999999999999999999 9999999987654 489999999865
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=3.4e-07 Score=71.83 Aligned_cols=46 Identities=22% Similarity=0.383 Sum_probs=39.9
Q ss_pred CCCCcccccccCCCCCeEec-CCCccccHHHHHHHhhcC------CCCcc--cccc
Q 020171 269 DSGKECVICLSEPRDTTVLP-CRHMCMCSECAKVLQFQT------NRCPI--CRQP 315 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lP-CgH~c~C~~Ca~~l~~~~------~~CPi--CR~~ 315 (330)
.++..|.||++-++|.++++ |||. ||..|+..|+... .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 34578999999999999997 9999 9999999987653 48999 9855
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.19 E-value=6.7e-07 Score=78.58 Aligned_cols=49 Identities=12% Similarity=0.069 Sum_probs=43.3
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcC-CCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT-NRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~-~~CPiCR~~I~~ 318 (330)
.+...|.||++-.+|.|+++|||. ||..|+..|+..+ .+||+||..+..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 456799999999999999999999 9999999988764 469999998864
No 65
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.11 E-value=1.6e-06 Score=62.67 Aligned_cols=48 Identities=19% Similarity=0.372 Sum_probs=39.6
Q ss_pred CCCCcccccccCCCCCeEecCCC-----ccccHHHHHHHhhc--CCCCcccccccc
Q 020171 269 DSGKECVICLSEPRDTTVLPCRH-----MCMCSECAKVLQFQ--TNRCPICRQPVE 317 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH-----~c~C~~Ca~~l~~~--~~~CPiCR~~I~ 317 (330)
+++..|.||+++..+..++||.+ . ++..|+..|... +..|++||..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~-~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELEN-VHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGS-CCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhh-hHHHHHHHHHHhCCCCccCCCCCeee
Confidence 56679999999877777899775 5 999999999764 568999998764
No 66
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.04 E-value=3.5e-06 Score=66.76 Aligned_cols=51 Identities=27% Similarity=0.682 Sum_probs=40.9
Q ss_pred cccccccCCCC-CeEecCCCccccHHHHHHHhhc-CCCCccccccccCeEEEEc
Q 020171 273 ECVICLSEPRD-TTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVERLLEIKV 324 (330)
Q Consensus 273 ~C~ICl~~~~d-~v~lPCgH~c~C~~Ca~~l~~~-~~~CPiCR~~I~~~l~i~~ 324 (330)
-|.+|---... -.++||.|. ||.+|+..|.++ .+.||+||..|.++-++.+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~ 55 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQCTR 55 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEG
T ss_pred ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEEecc
Confidence 36666655544 478899998 999999998765 4789999999999888754
No 67
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.98 E-value=1.1e-05 Score=60.86 Aligned_cols=49 Identities=27% Similarity=0.403 Sum_probs=40.0
Q ss_pred CCCCcccccccCCCCC-eEecCCCccccHHHHHHHhhcC--CCCccccccccC
Q 020171 269 DSGKECVICLSEPRDT-TVLPCRHMCMCSECAKVLQFQT--NRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~-v~lPCgH~c~C~~Ca~~l~~~~--~~CPiCR~~I~~ 318 (330)
+...+|.||++....- ...-|+|. |...|+..|+..+ .+||+||+.+..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 5567999999987643 33379999 9999999998776 789999988753
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.93 E-value=5e-06 Score=76.97 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=41.3
Q ss_pred CCCCcccccccCCCCCeEe-cCCCccccHHHHHHHhhcC--CCCcc--cccccc
Q 020171 269 DSGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQT--NRCPI--CRQPVE 317 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~l-PCgH~c~C~~Ca~~l~~~~--~~CPi--CR~~I~ 317 (330)
..+..|.||++-+++.|.. .|||. ||..|+..|+..+ ..||+ ||..+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4567899999999999875 99999 9999999987654 46999 999764
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.92 E-value=3.8e-06 Score=60.87 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=42.5
Q ss_pred CCcccccccCCCCCeEe-cCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 271 GKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 271 ~~~C~ICl~~~~d~v~l-PCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
...|.||++-.+|.+++ +|||. ||.+|+..|...+.+||++|.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 36799999999999999 99999 9999999998877789999999854
No 70
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.90 E-value=4.1e-06 Score=65.29 Aligned_cols=45 Identities=24% Similarity=0.602 Sum_probs=34.9
Q ss_pred CCCcccccccCCCCCeE---ecCCCccccHHHHHHHhhc--------CCCCcc--cccc
Q 020171 270 SGKECVICLSEPRDTTV---LPCRHMCMCSECAKVLQFQ--------TNRCPI--CRQP 315 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~v~---lPCgH~c~C~~Ca~~l~~~--------~~~CPi--CR~~ 315 (330)
+...|.||++...+..+ .+|||. ||.+|+..++.. ..+||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45689999999776433 379999 999999886442 237999 9987
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.74 E-value=7.2e-06 Score=78.56 Aligned_cols=50 Identities=18% Similarity=0.418 Sum_probs=38.7
Q ss_pred CCCCCcccccccCCCCCe--------EecCCCccccHHHHHHHhhcC-----------CCCccccccccC
Q 020171 268 TDSGKECVICLSEPRDTT--------VLPCRHMCMCSECAKVLQFQT-----------NRCPICRQPVER 318 (330)
Q Consensus 268 d~~~~~C~ICl~~~~d~v--------~lPCgH~c~C~~Ca~~l~~~~-----------~~CPiCR~~I~~ 318 (330)
++...+|.|||+...+.. -..|+|. |+..|+..|.... ..||.||++|..
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 356779999998766511 2379999 9999999997542 469999998864
No 72
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.79 E-value=0.0022 Score=50.10 Aligned_cols=48 Identities=33% Similarity=0.818 Sum_probs=39.9
Q ss_pred CcccccccCCCCCeEecCC-CccccHHHHHHHhhcCCCCccccccccCeEEE
Q 020171 272 KECVICLSEPRDTTVLPCR-HMCMCSECAKVLQFQTNRCPICRQPVERLLEI 322 (330)
Q Consensus 272 ~~C~ICl~~~~d~v~lPCg-H~c~C~~Ca~~l~~~~~~CPiCR~~I~~~l~i 322 (330)
.-|..|.-+.+. ++-|. |. +|..|+..|+..++.|+||..++-..|++
T Consensus 29 ~nCKsCWf~~k~--LV~C~dHY-LCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 29 QFCKSCWFENKG--LVECNNHY-LCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCSSCSCCSS--EEECSSCE-EEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred ccChhhccccCC--eeeecchh-hHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 469999987774 55676 88 99999999999999999999988766654
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.81 E-value=0.097 Score=47.49 Aligned_cols=48 Identities=25% Similarity=0.378 Sum_probs=36.5
Q ss_pred CCCcccccccCCCCC-eEecCCCccccHHHHHHHhhcC--CCCccccccccC
Q 020171 270 SGKECVICLSEPRDT-TVLPCRHMCMCSECAKVLQFQT--NRCPICRQPVER 318 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~-v~lPCgH~c~C~~Ca~~l~~~~--~~CPiCR~~I~~ 318 (330)
.-.+|.||.+-..-- ..-.|+|. |+..|+..|.... .+||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 467899999875542 22239999 9999999997654 489999987644
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.30 E-value=0.061 Score=41.64 Aligned_cols=30 Identities=27% Similarity=0.674 Sum_probs=25.9
Q ss_pred CCcccccccC-CCCCeE--ecCCCccccHHHHHH
Q 020171 271 GKECVICLSE-PRDTTV--LPCRHMCMCSECAKV 301 (330)
Q Consensus 271 ~~~C~ICl~~-~~d~v~--lPCgH~c~C~~Ca~~ 301 (330)
+..|.||++. .++++. +.|+|. ||..|+..
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 4689999976 567766 999999 99999997
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=90.21 E-value=0.25 Score=37.46 Aligned_cols=33 Identities=27% Similarity=0.636 Sum_probs=29.0
Q ss_pred CCCCcccccccCCCCCeEecCC----CccccHHHHHHH
Q 020171 269 DSGKECVICLSEPRDTTVLPCR----HMCMCSECAKVL 302 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCg----H~c~C~~Ca~~l 302 (330)
..-..|.+|.++..|+-++-|- |. ||+.|.+..
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr~s 49 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSRES 49 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCe-eeccccHHH
Confidence 4567899999999999999995 88 999998874
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=68.91 E-value=3.6 Score=39.54 Aligned_cols=46 Identities=24% Similarity=0.605 Sum_probs=30.8
Q ss_pred CCCcccccccCCCCC-eEecCCCccccHHHHHHHhh--c--CCCCccccccc
Q 020171 270 SGKECVICLSEPRDT-TVLPCRHMCMCSECAKVLQF--Q--TNRCPICRQPV 316 (330)
Q Consensus 270 ~~~~C~ICl~~~~d~-v~lPCgH~c~C~~Ca~~l~~--~--~~~CPiCR~~I 316 (330)
-...|.|-+...... .-.-|.|+ -|++-..-|.. + .-+||+|...+
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~Hl-QCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHL-QCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSS-CCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred EeecCCCccccccccCcCCcCCCc-ceECHHHHHHHhhcCCceeCCCCCccc
Confidence 346788877777664 56679998 66666544322 2 34699998876
No 77
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=62.89 E-value=0.41 Score=34.06 Aligned_cols=42 Identities=31% Similarity=0.925 Sum_probs=24.2
Q ss_pred CCCCccccccc-CCCCCeEecCCCcc------ccHHHHHHHhhcCCC----Cccccc
Q 020171 269 DSGKECVICLS-EPRDTTVLPCRHMC------MCSECAKVLQFQTNR----CPICRQ 314 (330)
Q Consensus 269 ~~~~~C~ICl~-~~~d~v~lPCgH~c------~C~~Ca~~l~~~~~~----CPiCR~ 314 (330)
++...|.||+. ++.|- |||.| +|..|--.+...+++ |-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG----~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADG----CGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSS----CCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccC----CCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 45678999995 45554 56664 566664444333322 666654
No 78
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=59.16 E-value=10 Score=29.11 Aligned_cols=49 Identities=22% Similarity=0.532 Sum_probs=35.0
Q ss_pred CCCCcccccccCCCC----CeEecCC---CccccHHHHHHHhhcC-CCCccccccccC
Q 020171 269 DSGKECVICLSEPRD----TTVLPCR---HMCMCSECAKVLQFQT-NRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d----~v~lPCg---H~c~C~~Ca~~l~~~~-~~CPiCR~~I~~ 318 (330)
.....|.||=++.-. -+|.-|. -- +|..|.+.-+... ..||-|.....+
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FP-vCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFP-ACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCC-CCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCCh-hhHHHHHHHHhccCccccccCCcccc
Confidence 355789999987432 1455554 34 8999999877764 569999998865
No 79
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=53.31 E-value=8.6 Score=41.40 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=44.3
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcCCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~~~CPiCR~~I~~ 318 (330)
-+...|.|-++-.+|.|++|.||..+=..++..|.....+||+-|+++..
T Consensus 889 P~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 45678999999999999999996559999999998888899999998864
No 80
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=48.84 E-value=9.6 Score=26.92 Aligned_cols=40 Identities=28% Similarity=0.747 Sum_probs=29.5
Q ss_pred CcccccccCCCCCeEe---cCCCccccHHHHHHHhhcCCCCccc
Q 020171 272 KECVICLSEPRDTTVL---PCRHMCMCSECAKVLQFQTNRCPIC 312 (330)
Q Consensus 272 ~~C~ICl~~~~d~v~l---PCgH~c~C~~Ca~~l~~~~~~CPiC 312 (330)
..|--|.....+...+ -|++. ||.+|-.-+-.+-..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCC
Confidence 4699998887665433 46777 9999976655455789998
No 81
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=47.11 E-value=8.1 Score=27.98 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=24.4
Q ss_pred CCCCcccccccCCCCCeEecC-CCccccHHHHHHH
Q 020171 269 DSGKECVICLSEPRDTTVLPC-RHMCMCSECAKVL 302 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPC-gH~c~C~~Ca~~l 302 (330)
++..-|+||.+. .....+-| +-+ ||..|-+.+
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDL-YC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDL-YCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEE-ECSSHHHHH
T ss_pred cCCCeeEEeCCC-CeEEecCCCCce-ehHHHHHHH
Confidence 556789999998 44556677 566 999998776
No 82
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=45.79 E-value=17 Score=25.90 Aligned_cols=46 Identities=17% Similarity=0.334 Sum_probs=27.6
Q ss_pred CCCCcccccccCCCCCeEecCCCccccHHHHHHHhhcC----CCCcccccc
Q 020171 269 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT----NRCPICRQP 315 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~~~----~~CPiCR~~ 315 (330)
..+..|.||.+...-..---|... |+..|+.-.+... =.|+.|++.
T Consensus 10 ~~~~~C~vC~~~~~ll~Cd~C~~~-~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDGTDVLRCTHCAAA-FHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCCTTCEECSSSCCE-ECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCCCeEEECCCCCCc-eecccCCCccCcCCCCCEECccccCC
Confidence 455689999865432222234444 8889986422221 269999764
No 83
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=40.36 E-value=22 Score=29.01 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=29.4
Q ss_pred CCCCCcccccccCCCCCeEecCCCccccHHHHHHHh------h-----cCCCCcccccc
Q 020171 268 TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQ------F-----QTNRCPICRQP 315 (330)
Q Consensus 268 d~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~------~-----~~~~CPiCR~~ 315 (330)
|..+..|.||-+--.-..---|-.. ||..|+.... . ..=.|.+|+..
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~-Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNA-FCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCE-EEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCCCeeEecCCCchh-hhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4556679999976432222235555 9999998531 1 12369999764
No 84
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=39.03 E-value=5.7 Score=37.18 Aligned_cols=49 Identities=24% Similarity=0.508 Sum_probs=38.2
Q ss_pred CCCCcccccccCCCCCeEec----CC--CccccHHHHHHHhhcCCCCccccccccCe
Q 020171 269 DSGKECVICLSEPRDTTVLP----CR--HMCMCSECAKVLQFQTNRCPICRQPVERL 319 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lP----Cg--H~c~C~~Ca~~l~~~~~~CPiCR~~I~~~ 319 (330)
.....|.||=+...-.++.. =| |+ .|.-|...|.....+||.|-.. ..+
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l-~Cs~C~t~W~~~R~~C~~Cg~~-~~l 234 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYL-SCSLCACEWHYVRIKCSHCEES-KHL 234 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEE-EETTTCCEEECCTTSCSSSCCC-SCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEE-EeCCCCCEEeecCcCCcCCCCC-CCe
Confidence 34579999999987665542 23 55 9999999999988999999886 443
No 85
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=34.38 E-value=20 Score=34.29 Aligned_cols=46 Identities=24% Similarity=0.504 Sum_probs=31.3
Q ss_pred CCcccccccCCCCC-eEecCCCccccHHHHHHHhhc----CCCCcccccccc
Q 020171 271 GKECVICLSEPRDT-TVLPCRHMCMCSECAKVLQFQ----TNRCPICRQPVE 317 (330)
Q Consensus 271 ~~~C~ICl~~~~d~-v~lPCgH~c~C~~Ca~~l~~~----~~~CPiCR~~I~ 317 (330)
...|.|-+...... .-..|.|+ -|++-..-|..+ .-+||+|.+.+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~Hl-qCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHL-QCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCC-CCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCC-ccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 45688877777664 55679999 677665544322 246999998763
No 86
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=32.66 E-value=3.5 Score=34.73 Aligned_cols=45 Identities=20% Similarity=0.529 Sum_probs=30.6
Q ss_pred CCCcccccccCC-----CCCeEecCCCccccHHHHHHHhhcC-CCCcccccc
Q 020171 270 SGKECVICLSEP-----RDTTVLPCRHMCMCSECAKVLQFQT-NRCPICRQP 315 (330)
Q Consensus 270 ~~~~C~ICl~~~-----~d~v~lPCgH~c~C~~Ca~~l~~~~-~~CPiCR~~ 315 (330)
++..|.+|...+ +-.+..-|.|. +|..|....+... =.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~-VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLF-VCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCE-ECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCch-hhcccccccCCCCcEeeHHHHHH
Confidence 468999999874 23566778888 9999984332221 248888653
No 87
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=29.81 E-value=42 Score=27.70 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=31.1
Q ss_pred CCCCCcccccccCCCCCeEecCCCccccHHHHHHHhh---------c--CCCCcccccc
Q 020171 268 TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF---------Q--TNRCPICRQP 315 (330)
Q Consensus 268 d~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~l~~---------~--~~~CPiCR~~ 315 (330)
|..+..|.||.+.-.-..--.|--. ||..|+..... . .=.|++|+..
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~-Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNA-FCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCE-EEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCe-eeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4566789999987653333345556 99999985321 1 2359999853
No 88
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=28.10 E-value=47 Score=28.04 Aligned_cols=54 Identities=30% Similarity=0.584 Sum_probs=35.4
Q ss_pred CCCCCCCcccccccCCCCCeEecCC----CccccHHHHHHHhhc----------CCCCccccccc-cCeEEE
Q 020171 266 DETDSGKECVICLSEPRDTTVLPCR----HMCMCSECAKVLQFQ----------TNRCPICRQPV-ERLLEI 322 (330)
Q Consensus 266 ~~d~~~~~C~ICl~~~~d~v~lPCg----H~c~C~~Ca~~l~~~----------~~~CPiCR~~I-~~~l~i 322 (330)
|+|..+..|.||-+.. .++-|. ..+||..|+..+... .=.|=+|...- ..+|+-
T Consensus 74 DeDG~~~yC~wC~~Gg---~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~l~~ll~~ 142 (159)
T 3a1b_A 74 DDDGYQSYCTICCGGR---EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKGTYGLLRR 142 (159)
T ss_dssp CTTSSBSSCTTTSCCS---EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSCEETTEEB
T ss_pred CCCCCcceeeEecCCC---eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCccHHHHhhh
Confidence 3445667899999754 455565 355999999886432 12599997654 445543
No 89
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=27.67 E-value=56 Score=31.45 Aligned_cols=54 Identities=26% Similarity=0.487 Sum_probs=34.0
Q ss_pred CCCCCCcccccccCCCCCeEe--cCCCccccHHHHHHHhhc----------CCCCccccccc-cCeEE
Q 020171 267 ETDSGKECVICLSEPRDTTVL--PCRHMCMCSECAKVLQFQ----------TNRCPICRQPV-ERLLE 321 (330)
Q Consensus 267 ~d~~~~~C~ICl~~~~d~v~l--PCgH~c~C~~Ca~~l~~~----------~~~CPiCR~~I-~~~l~ 321 (330)
+|..+..|.||-+...-...- .|.. |||..|++.+... .=.|=+|...- ..+++
T Consensus 89 ~DG~~~yCr~C~~Gg~l~~Cdn~~C~r-~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p~~~ll~ 155 (386)
T 2pv0_B 89 DDGYQSYCSICCSGETLLICGNPDCTR-CYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSRSGLLQ 155 (386)
T ss_dssp SSSSBCSCTTTCCCSSCEECCSTTCCC-EECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCCEETTEE
T ss_pred CCCCcccceEcCCCCeEEEeCCCCCCc-chHHHHHHHhcChhHHHHhhccCCceEEEcCCcchHhhhh
Confidence 345667899999765322222 3444 4999999886421 23699998654 44554
No 90
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=25.58 E-value=16 Score=25.49 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=24.9
Q ss_pred CCCCCcccccccCCCCCeEecCCCccccHHHHHH-Hhh---cCCCCccccccc
Q 020171 268 TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKV-LQF---QTNRCPICRQPV 316 (330)
Q Consensus 268 d~~~~~C~ICl~~~~d~v~lPCgH~c~C~~Ca~~-l~~---~~~~CPiCR~~I 316 (330)
|.++..|.||.+...-..---|... |+..|+.. +.. ..=.|+.|+...
T Consensus 6 d~~~~~C~vC~~~g~ll~Cd~C~~~-fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGELLCCDTCPSS-YHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCCSSCBCCSSSCCC-BCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCCCCEEEcCCCCHH-HcccccCCCcCcCCCCccCChhhcCch
Confidence 3556789999864321212223333 55666552 111 112599997643
No 91
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=25.25 E-value=1.2e+02 Score=22.87 Aligned_cols=33 Identities=18% Similarity=0.561 Sum_probs=24.1
Q ss_pred CCCCcccccccCCCCCeEecCC--CccccHHHHHHH
Q 020171 269 DSGKECVICLSEPRDTTVLPCR--HMCMCSECAKVL 302 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCg--H~c~C~~Ca~~l 302 (330)
..+..|-||---..+ .++||| -.+|+..|++.+
T Consensus 13 ~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccccccc-ceeccccccccccHhhcccc
Confidence 456799999754433 467888 445899999986
No 92
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.20 E-value=63 Score=28.35 Aligned_cols=32 Identities=19% Similarity=0.515 Sum_probs=23.0
Q ss_pred CCCCcccccccCCCCC----eEecCCCccccHHHHHH
Q 020171 269 DSGKECVICLSEPRDT----TVLPCRHMCMCSECAKV 301 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~----v~lPCgH~c~C~~Ca~~ 301 (330)
.++..|.+|...+.-. -.--||+. ||..|...
T Consensus 162 ~~~~~C~~C~~~F~~~~RrhHCR~CG~v-~C~~Cs~~ 197 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMTRKHHCRACGQI-FCGKCSSK 197 (226)
T ss_dssp CCCSBCTTTCCBCBTTBCCEECTTTCCE-ECTTTCCE
T ss_pred ccCCCCcCcCCCCCccccccccCCCcCE-eChhhcCC
Confidence 3456899999876532 33468888 99999764
No 93
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=22.86 E-value=13 Score=32.39 Aligned_cols=45 Identities=18% Similarity=0.409 Sum_probs=25.8
Q ss_pred CCCCCcccccccCCCCCeEecC---CCccccHHHHHHHhh----cCCCCccccccc
Q 020171 268 TDSGKECVICLSEPRDTTVLPC---RHMCMCSECAKVLQF----QTNRCPICRQPV 316 (330)
Q Consensus 268 d~~~~~C~ICl~~~~d~v~lPC---gH~c~C~~Ca~~l~~----~~~~CPiCR~~I 316 (330)
|.++..|.||..... +|-| ... |+..|+..-.. ..=.||.|+..-
T Consensus 4 d~~~~~C~~C~~~g~---ll~Cd~C~~~-~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNGGD---LLCCEKCPKV-FHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCCEE---EEECSSSSCE-ECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCCc---eEEcCCCCCc-cCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 356678999986542 3334 333 66677532111 113699998754
No 94
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=20.53 E-value=32 Score=24.64 Aligned_cols=50 Identities=14% Similarity=0.353 Sum_probs=29.0
Q ss_pred CCCCcccccccCCCCCeEecCCC--ccccHHHHHHHhhc----CCCCccccccccC
Q 020171 269 DSGKECVICLSEPRDTTVLPCRH--MCMCSECAKVLQFQ----TNRCPICRQPVER 318 (330)
Q Consensus 269 ~~~~~C~ICl~~~~d~v~lPCgH--~c~C~~Ca~~l~~~----~~~CPiCR~~I~~ 318 (330)
++...|.||........++-|-. ..|+..|+..-... .=.|+.|+..+..
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 44567999987654433344431 23777887642221 2359999886654
Done!