Query 020172
Match_columns 330
No_of_seqs 182 out of 942
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 12:53:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 1E-15 3.4E-20 120.4 3.2 62 227-288 8-70 (82)
2 4ati_A MITF, microphthalmia-as 99.5 8.4E-15 2.9E-19 122.4 6.4 63 223-285 25-91 (118)
3 4h10_B Circadian locomoter out 99.5 5.7E-14 1.9E-18 109.0 6.2 56 227-282 10-66 (71)
4 1a0a_A BHLH, protein (phosphat 99.5 1.1E-14 3.7E-19 110.0 1.5 53 226-278 3-62 (63)
5 1an4_A Protein (upstream stimu 99.5 2.5E-14 8.5E-19 107.2 3.3 52 226-277 6-63 (65)
6 1hlo_A Protein (transcription 99.4 1.2E-13 4.2E-18 107.5 3.4 60 228-287 15-76 (80)
7 4h10_A ARYL hydrocarbon recept 99.4 3.5E-14 1.2E-18 110.3 0.3 49 227-275 11-63 (73)
8 1nkp_B MAX protein, MYC proto- 99.4 8.5E-13 2.9E-17 103.1 6.4 58 228-285 5-64 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.3 2.1E-12 7.3E-17 102.9 6.1 56 228-283 9-67 (88)
10 3u5v_A Protein MAX, transcript 99.2 4.9E-12 1.7E-16 98.8 5.0 56 227-282 7-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.2 3.7E-11 1.3E-15 94.5 6.0 59 228-286 4-65 (80)
12 4f3l_A Mclock, circadian locom 98.9 1E-09 3.4E-14 103.3 5.7 52 226-277 13-65 (361)
13 1mdy_A Protein (MYOD BHLH doma 98.9 1.8E-09 6.1E-14 82.8 4.8 50 228-277 15-66 (68)
14 2ql2_B Neurod1, neurogenic dif 98.8 4.4E-09 1.5E-13 78.7 5.5 51 228-278 5-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1.9E-09 6.3E-14 102.9 2.7 51 225-275 13-67 (387)
16 4ath_A MITF, microphthalmia-as 98.4 1.8E-07 6.1E-12 74.7 5.0 48 236-283 3-54 (83)
17 2lfh_A DNA-binding protein inh 98.4 7.3E-08 2.5E-12 74.4 1.6 45 231-275 20-67 (68)
18 4aya_A DNA-binding protein inh 97.9 2.6E-05 8.9E-10 63.8 6.7 50 233-282 33-85 (97)
19 2wt7_A Proto-oncogene protein 36.0 17 0.00057 26.6 1.9 15 234-248 2-16 (63)
20 3muj_A Transcription factor CO 33.1 49 0.0017 28.4 4.6 35 239-273 95-133 (138)
21 1hwt_C Protein (heme activator 30.7 32 0.0011 25.0 2.7 22 267-288 57-78 (81)
22 1m2x_A Class B carbapenemase B 27.3 27 0.00093 29.2 2.0 31 249-279 191-221 (223)
23 1a7t_A Metallo-beta-lactamase; 26.4 37 0.0013 28.7 2.7 31 248-278 200-230 (232)
24 2er8_A Regulatory protein Leu3 25.6 18 0.00062 25.9 0.5 22 267-288 48-69 (72)
25 3fx7_A Putative uncharacterize 24.6 1E+02 0.0035 24.8 4.8 39 236-282 46-84 (94)
26 2fhx_A SPM-1; metallo-beta-lac 23.5 37 0.0013 28.6 2.1 30 249-278 216-245 (246)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.56 E-value=1e-15 Score=120.38 Aligned_cols=62 Identities=23% Similarity=0.444 Sum_probs=57.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCC-CCCChhchHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 020172 227 DPQTVAARQRRERISERIRVLQRLVPGG-SKMDTASMLDEAANYLKFLRSQVKALENPGHQKP 288 (330)
Q Consensus 227 ~~Hs~aER~RRerINer~~~LrsLVPg~-~KmDKASILeeAIdYIK~LQ~QVq~Le~~~~~L~ 288 (330)
..|+.+||+||++||++|..|+.|||++ .|+||++||++||+||++||.+++.|+.+...|.
T Consensus 8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999997 8999999999999999999999999998765543
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.53 E-value=8.4e-15 Score=122.42 Aligned_cols=63 Identities=22% Similarity=0.474 Sum_probs=52.4
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHhcCCCCC----CCChhchHHHHHHHHHHHHHHHHHHhCCCC
Q 020172 223 RISTDPQTVAARQRRERISERIRVLQRLVPGGS----KMDTASMLDEAANYLKFLRSQVKALENPGH 285 (330)
Q Consensus 223 r~ss~~Hs~aER~RRerINer~~~LrsLVPg~~----KmDKASILeeAIdYIK~LQ~QVq~Le~~~~ 285 (330)
+..+.+|+++||+||++||++|..|+.|||++. |++|++||+.||+||++||.+++.|+++..
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445679999999999999999999999999873 688999999999999999999999986543
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.46 E-value=5.7e-14 Score=108.98 Aligned_cols=56 Identities=23% Similarity=0.469 Sum_probs=51.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCC-CCCChhchHHHHHHHHHHHHHHHHHHhC
Q 020172 227 DPQTVAARQRRERISERIRVLQRLVPGG-SKMDTASMLDEAANYLKFLRSQVKALEN 282 (330)
Q Consensus 227 ~~Hs~aER~RRerINer~~~LrsLVPg~-~KmDKASILeeAIdYIK~LQ~QVq~Le~ 282 (330)
..|+.+||+||++||++|.+|+.|||+. .|+||++||+.||+||++||.++.=|+.
T Consensus 10 ~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~~ 66 (71)
T 4h10_B 10 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLEH 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 4799999999999999999999999975 6999999999999999999999887763
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.45 E-value=1.1e-14 Score=109.99 Aligned_cols=53 Identities=21% Similarity=0.429 Sum_probs=48.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCCC-------CCCChhchHHHHHHHHHHHHHHHH
Q 020172 226 TDPQTVAARQRRERISERIRVLQRLVPGG-------SKMDTASMLDEAANYLKFLRSQVK 278 (330)
Q Consensus 226 s~~Hs~aER~RRerINer~~~LrsLVPg~-------~KmDKASILeeAIdYIK~LQ~QVq 278 (330)
...|.++||+||++||..|..|+.|||++ .|++||+||+.||+||++||.+|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 45899999999999999999999999954 577899999999999999998763
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=2.5e-14 Score=107.20 Aligned_cols=52 Identities=25% Similarity=0.491 Sum_probs=48.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCCCC------CCChhchHHHHHHHHHHHHHHH
Q 020172 226 TDPQTVAARQRRERISERIRVLQRLVPGGS------KMDTASMLDEAANYLKFLRSQV 277 (330)
Q Consensus 226 s~~Hs~aER~RRerINer~~~LrsLVPg~~------KmDKASILeeAIdYIK~LQ~QV 277 (330)
...|+.+||+||++||+.|..|+.|||++. |+||++||++||+||++||.++
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999875 7899999999999999999865
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.39 E-value=1.2e-13 Score=107.49 Aligned_cols=60 Identities=23% Similarity=0.429 Sum_probs=55.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCC--CCCChhchHHHHHHHHHHHHHHHHHHhCCCCCC
Q 020172 228 PQTVAARQRRERISERIRVLQRLVPGG--SKMDTASMLDEAANYLKFLRSQVKALENPGHQK 287 (330)
Q Consensus 228 ~Hs~aER~RRerINer~~~LrsLVPg~--~KmDKASILeeAIdYIK~LQ~QVq~Le~~~~~L 287 (330)
.|+.+||+||..||+.|..|+.|||.. .|++|++||..||+||+.|+.+++.|+.+...|
T Consensus 15 ~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 15 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999976 699999999999999999999999998766554
No 7
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.39 E-value=3.5e-14 Score=110.33 Aligned_cols=49 Identities=29% Similarity=0.465 Sum_probs=46.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCC----CCCChhchHHHHHHHHHHHHH
Q 020172 227 DPQTVAARQRRERISERIRVLQRLVPGG----SKMDTASMLDEAANYLKFLRS 275 (330)
Q Consensus 227 ~~Hs~aER~RRerINer~~~LrsLVPg~----~KmDKASILeeAIdYIK~LQ~ 275 (330)
..|+.+||+||++||+.|.+|+.|||.+ .|+|||+||+.||+||+.|+.
T Consensus 11 ~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 11 EAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999976 799999999999999999974
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.36 E-value=8.5e-13 Score=103.09 Aligned_cols=58 Identities=24% Similarity=0.451 Sum_probs=53.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCC--CCCChhchHHHHHHHHHHHHHHHHHHhCCCC
Q 020172 228 PQTVAARQRRERISERIRVLQRLVPGG--SKMDTASMLDEAANYLKFLRSQVKALENPGH 285 (330)
Q Consensus 228 ~Hs~aER~RRerINer~~~LrsLVPg~--~KmDKASILeeAIdYIK~LQ~QVq~Le~~~~ 285 (330)
.|+.+||+||+.||+.|..|+.+||.+ .|++|++||..||+||+.|+.+++.|+.+..
T Consensus 5 ~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~ 64 (83)
T 1nkp_B 5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999974 8999999999999999999998888776543
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.30 E-value=2.1e-12 Score=102.93 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=51.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhchHHHHHHHHHHHHHHHHHHhCC
Q 020172 228 PQTVAARQRRERISERIRVLQRLVPGG---SKMDTASMLDEAANYLKFLRSQVKALENP 283 (330)
Q Consensus 228 ~Hs~aER~RRerINer~~~LrsLVPg~---~KmDKASILeeAIdYIK~LQ~QVq~Le~~ 283 (330)
.|+.+||+||+.||++|..|+.+||.. .|++|++||..||+||++|+.+.+.|..+
T Consensus 9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~ 67 (88)
T 1nkp_A 9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE 67 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999975 69999999999999999999998876543
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.24 E-value=4.9e-12 Score=98.84 Aligned_cols=56 Identities=25% Similarity=0.296 Sum_probs=49.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCC---CCCC-ChhchHHHHHHHHHHHHHHHHHHhC
Q 020172 227 DPQTVAARQRRERISERIRVLQRLVPG---GSKM-DTASMLDEAANYLKFLRSQVKALEN 282 (330)
Q Consensus 227 ~~Hs~aER~RRerINer~~~LrsLVPg---~~Km-DKASILeeAIdYIK~LQ~QVq~Le~ 282 (330)
..|+..||+||+.||++|..|+.+||. +.|. .|..||..||+||++||.++++++.
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 378999999999999999999999995 3555 6889999999999999999999865
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.16 E-value=3.7e-11 Score=94.46 Aligned_cols=59 Identities=25% Similarity=0.290 Sum_probs=53.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhchHHHHHHHHHHHHHHHHHHhCCCCC
Q 020172 228 PQTVAARQRRERISERIRVLQRLVPGG---SKMDTASMLDEAANYLKFLRSQVKALENPGHQ 286 (330)
Q Consensus 228 ~Hs~aER~RRerINer~~~LrsLVPg~---~KmDKASILeeAIdYIK~LQ~QVq~Le~~~~~ 286 (330)
.|+..||+||..|++.|..|+++||.. .|++|+.||..|++||+.|+.+.+.|..+...
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~ 65 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ 65 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999965 68899999999999999999999888765443
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.90 E-value=1e-09 Score=103.29 Aligned_cols=52 Identities=19% Similarity=0.446 Sum_probs=42.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCC-CCCCCChhchHHHHHHHHHHHHHHH
Q 020172 226 TDPQTVAARQRRERISERIRVLQRLVP-GGSKMDTASMLDEAANYLKFLRSQV 277 (330)
Q Consensus 226 s~~Hs~aER~RRerINer~~~LrsLVP-g~~KmDKASILeeAIdYIK~LQ~QV 277 (330)
..+|+.+||+||++||+.|.+|++||| ...|+||++||..||+|||.|+...
T Consensus 13 ~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 13 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 347889999999999999999999999 4579999999999999999998653
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.86 E-value=1.8e-09 Score=82.84 Aligned_cols=50 Identities=20% Similarity=0.406 Sum_probs=46.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCC--CCCChhchHHHHHHHHHHHHHHH
Q 020172 228 PQTVAARQRRERISERIRVLQRLVPGG--SKMDTASMLDEAANYLKFLRSQV 277 (330)
Q Consensus 228 ~Hs~aER~RRerINer~~~LrsLVPg~--~KmDKASILeeAIdYIK~LQ~QV 277 (330)
.|+..||+|+..||+.|..|+.+||.. .|++|+.+|..||+||.+|+..+
T Consensus 15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999964 78999999999999999999865
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.82 E-value=4.4e-09 Score=78.73 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=46.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhchHHHHHHHHHHHHHHHH
Q 020172 228 PQTVAARQRRERISERIRVLQRLVPGG---SKMDTASMLDEAANYLKFLRSQVK 278 (330)
Q Consensus 228 ~Hs~aER~RRerINer~~~LrsLVPg~---~KmDKASILeeAIdYIK~LQ~QVq 278 (330)
.++..||+|+..||+.|..||.+||.. .|+.|..+|..||+||.+|+..++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 367889999999999999999999964 589999999999999999998753
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.77 E-value=1.9e-09 Score=102.90 Aligned_cols=51 Identities=27% Similarity=0.453 Sum_probs=47.2
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhcCC----CCCCCChhchHHHHHHHHHHHHH
Q 020172 225 STDPQTVAARQRRERISERIRVLQRLVP----GGSKMDTASMLDEAANYLKFLRS 275 (330)
Q Consensus 225 ss~~Hs~aER~RRerINer~~~LrsLVP----g~~KmDKASILeeAIdYIK~LQ~ 275 (330)
++.+|+.+||+||++||+.|.+|+.||| ...|+||++||..||+|||.|+.
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 3458999999999999999999999999 56899999999999999999984
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.44 E-value=1.8e-07 Score=74.73 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhcCCCC----CCCChhchHHHHHHHHHHHHHHHHHHhCC
Q 020172 236 RRERISERIRVLQRLVPGG----SKMDTASMLDEAANYLKFLRSQVKALENP 283 (330)
Q Consensus 236 RRerINer~~~LrsLVPg~----~KmDKASILeeAIdYIK~LQ~QVq~Le~~ 283 (330)
-|..||++|.+|..|||.+ .|.+|++||..||+||++||.+++.+.++
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999975 47899999999999999999987766543
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.39 E-value=7.3e-08 Score=74.45 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC---CCCChhchHHHHHHHHHHHHH
Q 020172 231 VAARQRRERISERIRVLQRLVPGG---SKMDTASMLDEAANYLKFLRS 275 (330)
Q Consensus 231 ~aER~RRerINer~~~LrsLVPg~---~KmDKASILeeAIdYIK~LQ~ 275 (330)
..||+|+..||+.|..||.+||.. .|++|..+|..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 448888999999999999999965 689999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.86 E-value=2.6e-05 Score=63.81 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC---CCCChhchHHHHHHHHHHHHHHHHHHhC
Q 020172 233 ARQRRERISERIRVLQRLVPGG---SKMDTASMLDEAANYLKFLRSQVKALEN 282 (330)
Q Consensus 233 ER~RRerINer~~~LrsLVPg~---~KmDKASILeeAIdYIK~LQ~QVq~Le~ 282 (330)
||.|=..||+.|..||.+||.. .|+.|..+|..||+||..|+..++.-..
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~ 85 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLK 85 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5667788999999999999964 6899999999999999999998776544
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=35.99 E-value=17 Score=26.64 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 020172 234 RQRRERISERIRVLQ 248 (330)
Q Consensus 234 R~RRerINer~~~Lr 248 (330)
|++|.+...++.+.+
T Consensus 2 kr~rrrerNR~AA~r 16 (63)
T 2wt7_A 2 KRRIRRERNKMAAAK 16 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHH
Confidence 444444455555554
No 20
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=33.08 E-value=49 Score=28.44 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCCC----CCCChhchHHHHHHHHHHH
Q 020172 239 RISERIRVLQRLVPGG----SKMDTASMLDEAANYLKFL 273 (330)
Q Consensus 239 rINer~~~LrsLVPg~----~KmDKASILeeAIdYIK~L 273 (330)
.|.-.|..|+.+||.- .++-|.-||..|.|++..|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 5788999999999953 5788999999999998866
No 21
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=30.66 E-value=32 Score=25.01 Aligned_cols=22 Identities=41% Similarity=0.386 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCC
Q 020172 267 ANYLKFLRSQVKALENPGHQKP 288 (330)
Q Consensus 267 IdYIK~LQ~QVq~Le~~~~~L~ 288 (330)
..||..|+.+|+.||.....|.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999877663
No 22
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=27.34 E-value=27 Score=29.25 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=22.2
Q ss_pred hcCCCCCCCChhchHHHHHHHHHHHHHHHHH
Q 020172 249 RLVPGGSKMDTASMLDEAANYLKFLRSQVKA 279 (330)
Q Consensus 249 sLVPg~~KmDKASILeeAIdYIK~LQ~QVq~ 279 (330)
.++|+-...-....|+.+++|++.++++|++
T Consensus 191 ~i~pgHg~~~~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 191 YVVAGHDDWKDQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp EEEESBSCCCSTTHHHHHHHHHHHHHHTC--
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHHHhc
Confidence 5667644333467999999999999998753
No 23
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=26.44 E-value=37 Score=28.69 Aligned_cols=31 Identities=10% Similarity=0.276 Sum_probs=23.6
Q ss_pred HhcCCCCCCCChhchHHHHHHHHHHHHHHHH
Q 020172 248 QRLVPGGSKMDTASMLDEAANYLKFLRSQVK 278 (330)
Q Consensus 248 rsLVPg~~KmDKASILeeAIdYIK~LQ~QVq 278 (330)
..++|+-...-...+++.+++||+.|++++.
T Consensus 200 ~~v~pgHg~~~~~~~~~~~~~~l~~~~~~~~ 230 (232)
T 1a7t_A 200 RYVVPGHGNYGGTELIEHTKQIVNQYIESTS 230 (232)
T ss_dssp SEEEESSSCCBCTHHHHHHHHHHHHHHHHHC
T ss_pred CEEECCCCCcccHHHHHHHHHHHHHHHHHhc
Confidence 4567775544445789999999999998875
No 24
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=25.59 E-value=18 Score=25.93 Aligned_cols=22 Identities=9% Similarity=-0.004 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCC
Q 020172 267 ANYLKFLRSQVKALENPGHQKP 288 (330)
Q Consensus 267 IdYIK~LQ~QVq~Le~~~~~L~ 288 (330)
-.||..|+.+|+.|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3788888888888887665553
No 25
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=24.58 E-value=1e+02 Score=24.83 Aligned_cols=39 Identities=23% Similarity=0.466 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChhchHHHHHHHHHHHHHHHHHHhC
Q 020172 236 RRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLRSQVKALEN 282 (330)
Q Consensus 236 RRerINer~~~LrsLVPg~~KmDKASILeeAIdYIK~LQ~QVq~Le~ 282 (330)
.|.+..+.|..|.+.+ .-..+.|=+||.+|+.+++.|++
T Consensus 46 kr~kFee~fe~l~s~l--------~~f~e~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 46 RRDKFSEVLDNLKSTF--------NEFDEAAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHhhHHHhHHHHHHHHHhHH
Confidence 4556666666665422 12446788999999999999986
No 26
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=23.46 E-value=37 Score=28.65 Aligned_cols=30 Identities=10% Similarity=0.272 Sum_probs=23.3
Q ss_pred hcCCCCCCCChhchHHHHHHHHHHHHHHHH
Q 020172 249 RLVPGGSKMDTASMLDEAANYLKFLRSQVK 278 (330)
Q Consensus 249 sLVPg~~KmDKASILeeAIdYIK~LQ~QVq 278 (330)
.++|+-...-....|.++++||+.|+.+|+
T Consensus 216 ~i~pgHg~~~~~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 216 IVIPGHGEWGGPEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp EEEESBSCCBSTHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 566765444446899999999999999875
Done!