Your job contains 1 sequence.
>020173
MAEQGEITVNPTVSVVTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQ
IGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAA
LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA
PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPA
QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQ
FGGSAQQVALAKQRVDEYIYSQLIQQAGAQ
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020173
(330 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2150956 - symbol:AT5G15270 "AT5G15270" species... 270 9.9e-23 1
TAIR|locus:2084908 - symbol:FLK "AT3G04610" species:3702 ... 208 9.0e-21 2
TAIR|locus:2035807 - symbol:AT1G14170 "AT1G14170" species... 234 5.7e-19 1
ZFIN|ZDB-GENE-070424-78 - symbol:zgc:162999 "zgc:162999" ... 172 2.4e-18 2
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 171 2.9e-18 2
UNIPROTKB|G3V0E8 - symbol:PCBP2 "Poly(RC) binding protein... 169 8.2e-18 2
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 174 8.2e-18 2
UNIPROTKB|F1NPL2 - symbol:PCBP3 "Uncharacterized protein"... 173 8.5e-18 2
UNIPROTKB|F1NPL4 - symbol:PCBP3 "Uncharacterized protein"... 173 9.9e-18 2
UNIPROTKB|E2RCF9 - symbol:PCBP2 "Uncharacterized protein"... 169 1.1e-17 2
TAIR|locus:2120755 - symbol:PEP "AT4G26000" species:3702 ... 202 1.3e-17 2
UNIPROTKB|Q3SYT9 - symbol:PCBP2 "Poly(RC) binding protein... 169 1.5e-17 2
UNIPROTKB|Q17QV0 - symbol:PCBP3 "Uncharacterized protein"... 171 1.7e-17 2
UNIPROTKB|E9PFP8 - symbol:PCBP3 "Poly(rC)-binding protein... 171 1.7e-17 2
MGI|MGI:108202 - symbol:Pcbp2 "poly(rC) binding protein 2... 169 1.8e-17 2
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 171 1.9e-17 2
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 171 1.9e-17 2
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 171 1.9e-17 2
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 171 1.9e-17 2
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 171 1.9e-17 2
TAIR|locus:2161413 - symbol:AT5G46190 "AT5G46190" species... 178 2.0e-16 2
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 158 2.2e-16 2
UNIPROTKB|B4DXP5 - symbol:PCBP2 "Poly(rC)-binding protein... 158 2.3e-16 2
UNIPROTKB|Q15366 - symbol:PCBP2 "Poly(rC)-binding protein... 158 2.7e-16 2
RGD|1309626 - symbol:Pcbp2 "poly(rC) binding protein 2" s... 158 2.7e-16 2
UNIPROTKB|C9J0A4 - symbol:PCBP4 "Poly(rC)-binding protein... 153 3.0e-16 2
UNIPROTKB|F1SFQ4 - symbol:PCBP2 "Uncharacterized protein"... 158 3.8e-16 2
UNIPROTKB|I3LRN5 - symbol:PCBP4 "Uncharacterized protein"... 153 4.2e-16 2
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 157 5.0e-16 2
UNIPROTKB|E2RG64 - symbol:PCBP4 "Uncharacterized protein"... 153 5.2e-16 2
UNIPROTKB|Q0VCU0 - symbol:PCBP4 "Poly(rC)-binding protein... 153 5.2e-16 2
MGI|MGI:1890471 - symbol:Pcbp4 "poly(rC) binding protein ... 151 5.7e-16 2
RGD|1307910 - symbol:Pcbp4 "poly(rC) binding protein 4" s... 151 5.7e-16 2
ZFIN|ZDB-GENE-040426-2122 - symbol:zgc:65870 "zgc:65870" ... 159 7.2e-16 2
UNIPROTKB|P57723 - symbol:PCBP4 "Poly(rC)-binding protein... 153 8.4e-16 2
ZFIN|ZDB-GENE-030131-563 - symbol:pcbp2 "poly(rC) binding... 158 8.9e-16 2
UNIPROTKB|Q5E9A3 - symbol:PCBP1 "Poly(rC)-binding protein... 150 9.0e-16 2
UNIPROTKB|J9P7Y9 - symbol:PCBP1 "Uncharacterized protein"... 150 9.0e-16 2
UNIPROTKB|Q15365 - symbol:PCBP1 "Poly(rC)-binding protein... 150 9.0e-16 2
UNIPROTKB|I3LEC2 - symbol:PCBP1 "Uncharacterized protein"... 150 9.0e-16 2
MGI|MGI:1345635 - symbol:Pcbp1 "poly(rC) binding protein ... 150 9.0e-16 2
RGD|1561319 - symbol:Pcbp1 "poly(rC) binding protein 1" s... 150 9.0e-16 2
UNIPROTKB|H3BRU6 - symbol:PCBP2 "Poly(rC)-binding protein... 150 9.7e-16 2
UNIPROTKB|F8VRG9 - symbol:PCBP2 "Poly(rC)-binding protein... 121 1.6e-15 3
UNIPROTKB|J9P8W8 - symbol:PCBP2 "Uncharacterized protein"... 148 3.6e-15 2
UNIPROTKB|E1BVU6 - symbol:LOC100858906 "Uncharacterized p... 148 8.5e-15 2
FB|FBgn0015907 - symbol:bl "bancal" species:7227 "Drosoph... 112 1.6e-14 3
UNIPROTKB|K7GQW0 - symbol:RFC4 "Uncharacterized protein" ... 205 3.3e-14 1
TAIR|locus:2017612 - symbol:AT1G51580 "AT1G51580" species... 179 2.2e-13 2
UNIPROTKB|Q5RB68 - symbol:IGF2BP2 "Insulin-like growth fa... 198 3.2e-13 1
TAIR|locus:2831364 - symbol:AT4G18375 "AT4G18375" species... 158 4.4e-13 2
TAIR|locus:2056951 - symbol:AT2G03110 "AT2G03110" species... 172 1.1e-12 1
WB|WBGene00017816 - symbol:F26B1.2b species:6239 "Caenorh... 113 2.3e-12 3
UNIPROTKB|P91277 - symbol:F26B1.2 "Protein F26B1.2, isofo... 113 2.3e-12 3
UNIPROTKB|H9L011 - symbol:LOC426023 "Uncharacterized prot... 169 2.4e-12 1
MGI|MGI:1890358 - symbol:Igf2bp2 "insulin-like growth fac... 161 3.2e-12 2
TAIR|locus:2168367 - symbol:RCF3 "AT5G53060" species:3702... 157 4.9e-12 2
TAIR|locus:2066020 - symbol:AT2G22600 "AT2G22600" species... 140 1.3e-11 3
UNIPROTKB|P61978 - symbol:HNRNPK "Heterogeneous nuclear r... 137 2.1e-11 2
MGI|MGI:99894 - symbol:Hnrnpk "heterogeneous nuclear ribo... 137 2.1e-11 2
RGD|71058 - symbol:Hnrnpk "heterogeneous nuclear ribonucl... 137 2.1e-11 2
UNIPROTKB|F1PDI8 - symbol:IGF2BP2 "Uncharacterized protei... 155 3.0e-11 2
UNIPROTKB|K7GQ87 - symbol:RFC4 "Uncharacterized protein" ... 154 3.2e-11 2
ASPGD|ASPL0000075803 - symbol:AN4546 species:162425 "Emer... 147 3.2e-11 2
UNIPROTKB|F1NVW3 - symbol:IGF2BP2 "Uncharacterized protei... 158 3.4e-11 2
RGD|1305614 - symbol:Igf2bp2 "insulin-like growth factor ... 152 3.6e-11 2
UNIPROTKB|K7GKD3 - symbol:RFC4 "Uncharacterized protein" ... 154 3.7e-11 2
UNIPROTKB|F1SFK0 - symbol:RFC4 "Uncharacterized protein" ... 154 3.8e-11 2
UNIPROTKB|Q9UNW9 - symbol:NOVA2 "RNA-binding protein Nova... 148 4.7e-11 2
UNIPROTKB|F8VWQ4 - symbol:PCBP2 "Poly(rC)-binding protein... 113 5.4e-11 2
UNIPROTKB|E1BFI4 - symbol:IGF2BP2 "Uncharacterized protei... 154 5.7e-11 2
UNIPROTKB|F1PUD6 - symbol:NOVA2 "Uncharacterized protein"... 146 8.7e-11 2
UNIPROTKB|F1NWN2 - symbol:IGF2BP2 "Uncharacterized protei... 176 1.2e-10 1
UNIPROTKB|F1MS84 - symbol:NOVA2 "Uncharacterized protein"... 143 1.5e-10 2
CGD|CAL0000592 - symbol:orf19.5627 species:5476 "Candida ... 131 1.5e-10 2
UNIPROTKB|I3LQS0 - symbol:HNRNPK "Uncharacterized protein... 129 1.5e-10 2
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 171 1.7e-10 1
UNIPROTKB|B4DLC0 - symbol:PCBP2 "Poly(rC)-binding protein... 169 1.7e-10 1
UNIPROTKB|Q3T0D0 - symbol:HNRNPK "Heterogeneous nuclear r... 129 1.8e-10 2
UNIPROTKB|F1RM28 - symbol:NOVA2 "Uncharacterized protein"... 143 2.6e-10 2
UNIPROTKB|F8W0G4 - symbol:PCBP2 "Poly(rC)-binding protein... 149 4.2e-10 1
RGD|1308032 - symbol:Nova2 "neuro-oncological ventral ant... 139 6.1e-10 2
ZFIN|ZDB-GENE-040426-1926 - symbol:hnrnpk "heterogeneous ... 122 8.8e-10 2
UNIPROTKB|E2RJ54 - symbol:E2RJ54 "Uncharacterized protein... 120 1.0e-09 2
ZFIN|ZDB-GENE-050706-149 - symbol:zgc:110045 "zgc:110045"... 154 1.5e-09 1
UNIPROTKB|Q9Y6M1 - symbol:IGF2BP2 "Insulin-like growth fa... 148 1.5e-09 2
UNIPROTKB|F8W930 - symbol:IGF2BP2 "Insulin-like growth fa... 148 1.5e-09 2
UNIPROTKB|G4N5A5 - symbol:MGG_16887 "Uncharacterized prot... 128 1.9e-09 2
UNIPROTKB|D3DS81 - symbol:NOVA1 "Neuro-oncological ventra... 132 3.2e-09 2
ZFIN|ZDB-GENE-060503-536 - symbol:igf2bp2b "insulin-like ... 160 4.1e-09 2
UNIPROTKB|F1NPL3 - symbol:PCBP3 "Uncharacterized protein"... 159 4.5e-09 1
UNIPROTKB|H9L0I0 - symbol:HNRPK "Uncharacterized protein"... 114 5.6e-09 2
UNIPROTKB|H9L242 - symbol:HNRPK "Uncharacterized protein"... 114 5.7e-09 2
ZFIN|ZDB-GENE-040426-1923 - symbol:hnrpkl "heterogeneous ... 115 5.7e-09 2
UNIPROTKB|Q5ZIQ3 - symbol:HNRNPK "Heterogeneous nuclear r... 113 7.3e-09 2
UNIPROTKB|C9JZY3 - symbol:PCBP4 "Poly(rC)-binding protein... 137 8.9e-09 1
UNIPROTKB|F1LMZ7 - symbol:Nova1 "RNA-binding protein Nova... 133 1.2e-08 2
UNIPROTKB|E1C453 - symbol:HNRNPK "Heterogeneous nuclear r... 111 1.2e-08 2
POMBASE|SPCC757.09c - symbol:rnc1 "RNA-binding protein th... 119 2.6e-08 2
RGD|621345 - symbol:Nova1 "neuro-oncological ventral anti... 130 2.7e-08 2
WARNING: Descriptions of 86 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 270 (100.1 bits), Expect = 9.9e-23, P = 9.9e-23
Identities = 76/228 (33%), Positives = 115/228 (50%)
Query: 17 TEPEPRHDVSG-KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
+ P+ +D +G +RR G+ S R D +FR + P ++IG VIG+ G ++++
Sbjct: 19 SRPQSDYDDNGGSKRRYRGDDRDSLVIDR---DDTVFRYLCPVKKIGSVIGRGGDIVKQL 75
Query: 76 REEXXXXXXXXXXXXRHEERVIII-SSKDNDNVVSDAENALQ--QIAALILKD----DDS 128
R + +ERVI I S D N D E L Q A + D DD+
Sbjct: 76 RNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDALFRIHDRVVADDA 135
Query: 129 NSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCA 188
SE S V A +LL+ Q GC++G GQ ++ +R+ +GA I I+ +PLCA
Sbjct: 136 RSEDSPEGEKQVTA---KLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCA 192
Query: 189 SAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSA 236
SD ++QISG+V V AL++I ++L ENP R +S + Y A
Sbjct: 193 L--NSDELIQISGEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYPA 238
Score = 201 (75.8 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 68/228 (29%), Positives = 105/228 (46%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIIS 100
P+ A + R++ P I VIGK G I ++R+E + +I IS
Sbjct: 275 PRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITIS 334
Query: 101 SKDNDNVVSDAEN-ALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
+++ V DA + ++ + L K D S G V+ T RLL+ S+ GC++G
Sbjct: 335 ARE---VFEDAYSPTIEAVMRLQPKCSDKVERDS----GLVSFTT-RLLVPSSRIGCILG 386
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G I ++R + A I IL LP AS + D +VQISG++ AL++I ++LR
Sbjct: 387 KGGAIITEMRRMTKANIRILGKENLPKVAS--DDDEMVQISGELDVAKEALIQITSRLRA 444
Query: 220 NPPRQVISISPAYNYSAIRPAQPFVE--PTSADYVTFEMLISESLVGG 265
N V A SA+ P P+V P + D ++ S L G
Sbjct: 445 N----VFDREGAV--SALMPVLPYVPVAPDAGDRFDYDSRDSRRLERG 486
>TAIR|locus:2084908 [details] [associations]
symbol:FLK "AT3G04610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009911
"positive regulation of flower development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GO:GO:0003723
GO:GO:0009911 EMBL:AC011437 KO:K13162 HSSP:Q9UNW9 EMBL:AY070475
IPI:IPI00521688 RefSeq:NP_187112.1 UniGene:At.28392
ProteinModelPortal:Q9SR13 SMR:Q9SR13 STRING:Q9SR13 PRIDE:Q9SR13
ProMEX:Q9SR13 EnsemblPlants:AT3G04610.1 GeneID:819619
KEGG:ath:AT3G04610 TAIR:At3g04610 InParanoid:Q9SR13 OMA:LEPQQYE
PhylomeDB:Q9SR13 ProtClustDB:CLSN2914698 Genevestigator:Q9SR13
Uniprot:Q9SR13
Length = 577
Score = 208 (78.3 bits), Expect = 9.0e-21, Sum P(2) = 9.0e-21
Identities = 57/202 (28%), Positives = 104/202 (51%)
Query: 19 PEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
PE + ED + G + + + +FR++VP++++G +IG++G I+KI EE
Sbjct: 156 PEHLESLQKSEPEEDATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEE 215
Query: 79 XXXXXXXXXXXXRHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAA 137
ER +++S K+ ++ + + + L ++ I+ D + EAS+ A
Sbjct: 216 TRARIKILDGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIV--DGLDGEASQ-AP 272
Query: 138 GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVV 197
+T RLL+ SQAG LIG G ++ ++ +S + +L LP+ A + DRVV
Sbjct: 273 PPSKVST-RLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFAL--QDDRVV 329
Query: 198 QISGDVPAVLNALVEIGNQLRE 219
++ G+ +V AL I + LR+
Sbjct: 330 EVVGEPTSVHRALELIASHLRK 351
Score = 98 (39.6 bits), Expect = 9.0e-21, Sum P(2) = 9.0e-21
Identities = 33/104 (31%), Positives = 45/104 (43%)
Query: 219 ENPPRQVISI---SPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
E P Q IS P N + A P V A VT +M I S +IG GSNIS
Sbjct: 427 EKQPHQGISAYGREPPMNVH-VSSAPPMV----AQQVTQQMQIPLSYADAVIGTSGSNIS 481
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
R SGA + + +G ++ G+ QV A Q + ++
Sbjct: 482 YTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNFM 525
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 234 (87.4 bits), Expect = 5.7e-19, P = 5.7e-19
Identities = 78/268 (29%), Positives = 131/268 (48%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSK---- 102
++D ++R + P ++ G +IGK G ++IR E EERV+ + S
Sbjct: 41 SEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEEL 100
Query: 103 ----DNDNVVSDAENALQQIAALILKD---DDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
D+ +V A +AL ++ +++ D DD + + + G T+R+L+ Q G
Sbjct: 101 NHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDL--GEKQTVTVRMLVPSDQIG 158
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
C+IG GQ I+ LRN + A I ++ + LP CA D ++ I G+ V AL ++ +
Sbjct: 159 CVIGKGGQVIQNLRNDTNAQIRVIK-DHLPACALTLSHDELLLIIGEPLVVREALYQVAS 217
Query: 216 QLRENPPR-QVISISPAYNYSAIRPAQPFVEP--TS-----------ADYVTFEM--LIS 259
L +NP R Q + +S + + S +P + TS AD F + +
Sbjct: 218 LLHDNPSRFQHLLLSSSSS-SMHQPGAMLMSAALTSSHRNYAVRRDIADAREFCVCFICP 276
Query: 260 ESLVGGLIGRCGSNISRIRNESGAMIKV 287
VGG+IG+ G I++IR E+GA I+V
Sbjct: 277 AENVGGVIGKGGGFINQIRQETGATIRV 304
Score = 189 (71.6 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 59/176 (33%), Positives = 87/176 (49%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDN 104
A A++ I P+ +G VIGK G I +IR+E ++ +I ISSK+
Sbjct: 264 ADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEF 323
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
S A NA A+ L+ S A +A +T RLL++ SQ GCLIG G
Sbjct: 324 YEDQSPAVNA-----AIRLQQRCSEKVGKD--ANDLAIST-RLLVSSSQIGCLIGKGGAV 375
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R+ + A I IL +P A E + +VQI+G A + AL ++ +LR N
Sbjct: 376 ISEMRSVTRANIRILQKEDVPKIA--REDEEMVQITGSPDAAMKALTQVILRLRAN 429
>ZFIN|ZDB-GENE-070424-78 [details] [associations]
symbol:zgc:162999 "zgc:162999" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-070424-78
GO:GO:0003723 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 EMBL:BC135088 IPI:IPI00845944
RefSeq:NP_001083021.1 UniGene:Dr.122660 ProteinModelPortal:A4IGG5
SMR:A4IGG5 PRIDE:A4IGG5 GeneID:100038772 KEGG:dre:100038772
NextBio:20788560 Bgee:A4IGG5 Uniprot:A4IGG5
Length = 350
Score = 172 (65.6 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 49/171 (28%), Positives = 88/171 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER++ I+ D +
Sbjct: 19 RLLMHGKEVGSIIGKKGETVKKMREESSARINVSEGNC--PERIVTITGP-TDAIFK--- 72
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A IA ++D NS ++ A T+RL++ SQ G LIG G I+++R S+
Sbjct: 73 -AFAMIAYKF-EEDIINSMSNSQATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMREST 129
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 130 GAQVQV-AGDMLP-----NSTERAVTISGTPEAIIQCVKQICVVMLESPPK 174
Score = 110 (43.8 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 229 SPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+P + PA P V+ S+ T E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 245 TPFTSLGQTTPAFPGVD-ASSQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIA 303
Query: 289 GGKGEQKHRHIQFGGSAQQVALAKQRVD 316
R I G+ ++LA+ ++
Sbjct: 304 NAMEGSSDRQITITGTPANISLAQYLIN 331
Score = 100 (40.3 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 30/92 (32%), Positives = 45/92 (48%)
Query: 131 EASKVAA--GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCA 188
E SKV + G TIRLL+ G + G +IG G+ ++K+R S A I + N C
Sbjct: 2 ELSKVQSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESSARINVSEGN----CP 57
Query: 189 SAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 58 -----ERIVTITGPTDAIFKAFAMIAYKFEED 84
Score = 82 (33.9 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 245 EPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGG 303
+ TS VT +++ S G LIG+ GS I +R +GA ++V G R + G
Sbjct: 93 QATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTISG 152
Query: 304 SAQQV 308
+ + +
Sbjct: 153 TPEAI 157
Score = 74 (31.1 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXR 91
E+ I + V R++VP+ Q G +IGK G +I+++RE
Sbjct: 82 EEDIINSMSNSQATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLP 141
Query: 92 HE-ERVIIIS 100
+ ER + IS
Sbjct: 142 NSTERAVTIS 151
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 171 (65.3 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 49/171 (28%), Positives = 88/171 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER++ I+ D +
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNC--PERIVTITGP-TDAIFK--- 70
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A IA ++D NS ++ A T+RL++ SQ G LIG G I+++R S+
Sbjct: 71 -AFAMIAYKF-EEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIREST 127
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 128 GAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 113 (44.8 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 35/100 (35%), Positives = 51/100 (51%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA 231
+R+V I+G A+ A I + E+ + S SPA
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEEDIINSM-SNSPA 92
Score = 108 (43.1 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 239 PAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRH 298
PA P ++ S T E+ I L+G +IGR G+ I+ IR SGA IK+ R
Sbjct: 230 PAFPGLD-ASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQ 288
Query: 299 IQFGGSAQQVALAKQRVDEYIYSQL 323
I G+ ++LA+ ++ + S++
Sbjct: 289 ITITGTPANISLAQYLINARLTSEV 313
Score = 83 (34.3 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE + ER + IS D ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 156
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 157 Q----CVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQG 199
>UNIPROTKB|G3V0E8 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CH471054 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 RefSeq:NP_001122386.1 UniGene:Hs.546271 GeneID:5094
KEGG:hsa:5094 CTD:5094 HGNC:HGNC:8648 KO:K13162 ChiTaRS:PCBP2
GenomeRNAi:5094 NextBio:19648 ProteinModelPortal:G3V0E8 SMR:G3V0E8
PRIDE:G3V0E8 Ensembl:ENST00000437231 Ensembl:ENST00000455667
ArrayExpress:G3V0E8 Bgee:G3V0E8 Uniprot:G3V0E8
Length = 318
Score = 169 (64.5 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 49/176 (27%), Positives = 93/176 (52%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC--PERIITLAGPTN-------- 66
Query: 113 NALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 107 (42.7 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 106 (42.4 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 237 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 296
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 297 ISLAQYLINVRLSSE 311
Score = 74 (31.1 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
A V R++VP+ Q G +IGK G +I++IRE
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 174 (66.3 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 50/186 (26%), Positives = 87/186 (46%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
VS NA+ LI K + ++ KV + IRL++ SQ G L
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEFNDVGKVGKTQIP---IRLIVPASQCGSL 117
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG SG I+++R ++G +I + A LP + ++R V +SG + + +I +
Sbjct: 118 IGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLVM 171
Query: 218 RENPPR 223
E+PPR
Sbjct: 172 LESPPR 177
Score = 111 (44.1 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 34/102 (33%), Positives = 52/102 (50%)
Query: 235 SAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GK 291
S +R A P A EM +S L+G +IG+ G+ I+ IR SGAMI++ +
Sbjct: 272 SQLRTANP---ANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEERE 328
Query: 292 GEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ---LIQQAGAQ 330
G R I G+ VALA+ ++ + Q L++QA +Q
Sbjct: 329 GGNTDRTITISGNPDSVALAQYLINMSVELQKANLLEQAQSQ 370
>UNIPROTKB|F1NPL2 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00812713 Ensembl:ENSGALT00000021485 ArrayExpress:F1NPL2
Uniprot:F1NPL2
Length = 319
Score = 173 (66.0 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 47/172 (27%), Positives = 89/172 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER++ I+ +DA
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSC--PERIVTITGP------TDA- 67
Query: 113 NALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+ + + LK ++D N+ + T+RL++ SQ G LIG G I+++R S
Sbjct: 68 -IFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRES 126
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 TGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 105 (42.0 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 30/89 (33%), Positives = 46/89 (51%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + P
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGSCP------ 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 56 --ERIVTITGPTDAIFKAFSMIALKFEED 82
Score = 101 (40.6 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 246 PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSA 305
PTS+ E+ I L+G +IGR GS I+ IR SGA IK+ R + GS
Sbjct: 240 PTSSH----ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSP 295
Query: 306 QQVALAKQRVD 316
++LA+ ++
Sbjct: 296 ANISLAQYLIN 306
Score = 83 (34.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 247 TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
TS VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 93 TSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 79 (32.9 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 29/111 (26%), Positives = 52/111 (46%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE + ER + IS D ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 156
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
++QI ++L +S + + + A+ ++ AG QA + G
Sbjct: 157 Q----CVKQICVVML---ESPPKGATIPYRPKPASA-PIIFAGGQAFTIQG 199
>UNIPROTKB|F1NPL4 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00571530 Ensembl:ENSGALT00000021482 ArrayExpress:F1NPL4
Uniprot:F1NPL4
Length = 326
Score = 173 (66.0 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 47/172 (27%), Positives = 89/172 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER++ I+ +DA
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSC--PERIVTITGP------TDA- 67
Query: 113 NALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+ + + LK ++D N+ + T+RL++ SQ G LIG G I+++R S
Sbjct: 68 -IFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRES 126
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 TGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 105 (42.0 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 30/89 (33%), Positives = 46/89 (51%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + P
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGSCP------ 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 56 --ERIVTITGPTDAIFKAFSMIALKFEED 82
Score = 101 (40.6 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 246 PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSA 305
PTS+ E+ I L+G +IGR GS I+ IR SGA IK+ R + GS
Sbjct: 243 PTSSH----ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSP 298
Query: 306 QQVALAKQRVD 316
++LA+ ++
Sbjct: 299 ANISLAQYLIN 309
Score = 83 (34.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 247 TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
TS VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 93 TSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 79 (32.9 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 29/111 (26%), Positives = 52/111 (46%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE + ER + IS D ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 156
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
++QI ++L +S + + + A+ ++ AG QA + G
Sbjct: 157 Q----CVKQICVVML---ESPPKGATIPYRPKPASA-PIIFAGGQAFTIQG 199
>UNIPROTKB|E2RCF9 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:AAEX03014980 RefSeq:XP_857995.1
ProteinModelPortal:E2RCF9 Ensembl:ENSCAFT00000010996 GeneID:477596
KEGG:cfa:477596 Uniprot:E2RCF9
Length = 331
Score = 169 (64.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 49/176 (27%), Positives = 93/176 (52%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC--PERIITLAGPTN-------- 66
Query: 113 NALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 107 (42.7 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 106 (42.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 250 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 309
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 310 ISLAQYLINVRLSSE 324
Score = 74 (31.1 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
A V R++VP+ Q G +IGK G +I++IRE
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
>TAIR|locus:2120755 [details] [associations]
symbol:PEP "AT4G26000" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048467 "gynoecium development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
EMBL:AL049483 GO:GO:0003723 GO:GO:0048367 GO:GO:0048467 HSSP:Q96AE4
KO:K13162 EMBL:AY056288 EMBL:AY099659 EMBL:AY114064 IPI:IPI00547245
PIR:T04255 RefSeq:NP_194330.1 UniGene:At.23137 UniGene:At.66652
ProteinModelPortal:Q9SZH4 SMR:Q9SZH4 IntAct:Q9SZH4 STRING:Q9SZH4
PaxDb:Q9SZH4 PRIDE:Q9SZH4 EnsemblPlants:AT4G26000.1 GeneID:828706
KEGG:ath:AT4G26000 TAIR:At4g26000 eggNOG:NOG314569
HOGENOM:HOG000243588 InParanoid:Q9SZH4 OMA:MCEETRA PhylomeDB:Q9SZH4
ProtClustDB:CLSN2685896 Genevestigator:Q9SZH4 Uniprot:Q9SZH4
Length = 495
Score = 202 (76.2 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 54/173 (31%), Positives = 96/173 (55%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNV- 107
D +FR+IVP ++G +IG++G I+K+ EE +R+++IS K+
Sbjct: 73 DCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAY 132
Query: 108 VSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+S A +A+ ++ + L D+D + + AG V ++ +RLL+A +QA LIG G I
Sbjct: 133 MSPAMDAVLRVFRRVSGLPDNDDDDVQN---AGSVFSS-VRLLVASTQAINLIGKQGSLI 188
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
+ + +SGA++ IL+ + P A+ + +R+V + G+ +L AL I LR
Sbjct: 189 KSIVENSGASVRILSEEETPFYAA--QDERIVDLQGEALKILKALEAIVGHLR 239
Score = 73 (30.8 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
V+ M I S +IG G+NI+ IR SGA I + + ++ G+ QV A
Sbjct: 341 VSQTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIKESPHPDQIT-VEIKGTTSQVQTA 399
Query: 312 KQRVDEYI 319
+Q + E+I
Sbjct: 400 EQLIQEFI 407
>UNIPROTKB|Q3SYT9 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2" species:9913 "Bos
taurus" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:DAAA02012861 EMBL:DAAA02012860
EMBL:BC103397 IPI:IPI00696193 RefSeq:NP_001029883.1
UniGene:Bt.49118 SMR:Q3SYT9 STRING:Q3SYT9
Ensembl:ENSBTAT00000027662 GeneID:540653 KEGG:bta:540653
InParanoid:Q3SYT9 NextBio:20878753 Uniprot:Q3SYT9
Length = 349
Score = 169 (64.5 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 49/176 (27%), Positives = 93/176 (52%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC--PERIITLAGPTN-------- 66
Query: 113 NALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 107 (42.7 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 106 (42.4 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 268 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 327
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 328 ISLAQYLINVRLSSE 342
Score = 74 (31.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
A V R++VP+ Q G +IGK G +I++IRE
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
>UNIPROTKB|Q17QV0 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F EMBL:DAAA02003497 EMBL:DAAA02003498
EMBL:DAAA02003499 EMBL:DAAA02003500 EMBL:DAAA02003501 EMBL:BC118166
IPI:IPI00733966 RefSeq:NP_001069752.1 UniGene:Bt.27304 SMR:Q17QV0
Ensembl:ENSBTAT00000043482 GeneID:613725 KEGG:bta:613725
InParanoid:Q17QV0 NextBio:20898729 Uniprot:Q17QV0
Length = 361
Score = 171 (65.3 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 49/171 (28%), Positives = 88/171 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER++ I+ D +
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNC--PERIVTITGP-TDAIFK--- 70
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A IA ++D NS ++ A T+RL++ SQ G LIG G I+++R S+
Sbjct: 71 -AFAMIAYKF-EEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIREST 127
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 128 GAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 113 (44.8 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 35/100 (35%), Positives = 51/100 (51%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA 231
+R+V I+G A+ A I + E+ + S SPA
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEEDIINSM-SNSPA 92
Score = 104 (41.7 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 285 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 344
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 345 YLINARLTSEV 355
Score = 78 (32.5 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE + ER + IS D ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 156
Query: 109 SDAENALQQIAALILK 124
++QI ++L+
Sbjct: 157 Q----CVKQICVVMLE 168
>UNIPROTKB|E9PFP8 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 HGNC:HGNC:8651 ChiTaRS:PCBP3 IPI:IPI00550365
ProteinModelPortal:E9PFP8 SMR:E9PFP8 PRIDE:E9PFP8
Ensembl:ENST00000400304 UCSC:uc002zht.2 ArrayExpress:E9PFP8
Bgee:E9PFP8 Uniprot:E9PFP8
Length = 361
Score = 171 (65.3 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 49/171 (28%), Positives = 88/171 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER++ I+ D +
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNC--PERIVTITGP-TDAIFK--- 70
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A IA ++D NS ++ A T+RL++ SQ G LIG G I+++R S+
Sbjct: 71 -AFAMIAYKF-EEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIREST 127
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 128 GAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 113 (44.8 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 35/100 (35%), Positives = 51/100 (51%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA 231
+R+V I+G A+ A I + E+ + S SPA
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEEDIINSM-SNSPA 92
Score = 104 (41.7 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 285 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 344
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 345 YLINARLTSEV 355
Score = 78 (32.5 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE + ER + IS D ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 156
Query: 109 SDAENALQQIAALILK 124
++QI ++L+
Sbjct: 157 Q----CVKQICVVMLE 168
>MGI|MGI:108202 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0050687 "negative regulation of defense response
to virus" evidence=ISO] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:108202 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 GO:GO:0050687
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094 KO:K13162 OMA:CVVMLEL
ChiTaRS:PCBP2 EMBL:L19661 EMBL:X75947 EMBL:X97982 EMBL:AF236845
EMBL:AF236842 EMBL:AF236843 EMBL:AF236844 IPI:IPI00127707
IPI:IPI00221796 IPI:IPI00221799 PIR:S78515 RefSeq:NP_001096635.1
RefSeq:NP_001096636.1 RefSeq:NP_035172.2 UniGene:Mm.236513
ProteinModelPortal:Q61990 SMR:Q61990 IntAct:Q61990 STRING:Q61990
PhosphoSite:Q61990 REPRODUCTION-2DPAGE:Q61990 PaxDb:Q61990
PRIDE:Q61990 Ensembl:ENSMUST00000077037 Ensembl:ENSMUST00000078404
Ensembl:ENSMUST00000108838 GeneID:18521 KEGG:mmu:18521
UCSC:uc007xvy.2 UCSC:uc007xvz.2 UCSC:uc009vat.1 InParanoid:Q61990
NextBio:294276 Bgee:Q61990 CleanEx:MM_PCBP2 Genevestigator:Q61990
GermOnline:ENSMUSG00000056851 Uniprot:Q61990
Length = 362
Score = 169 (64.5 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 49/176 (27%), Positives = 93/176 (52%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC--PERIITLAGPTN-------- 66
Query: 113 NALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 107 (42.7 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 106 (42.4 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 281 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 340
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 341 ISLAQYLINVRLSSE 355
Score = 74 (31.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
A V R++VP+ Q G +IGK G +I++IRE
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 171 (65.3 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 49/171 (28%), Positives = 88/171 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER++ I+ D +
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNC--PERIVTITGP-TDAIFK--- 102
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A IA ++D NS ++ A T+RL++ SQ G LIG G I+++R S+
Sbjct: 103 -AFAMIAYKF-EEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIREST 159
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 160 GAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 113 (44.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 35/100 (35%), Positives = 51/100 (51%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA 231
+R+V I+G A+ A I + E+ + S SPA
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEEDIINSM-SNSPA 124
Score = 104 (41.7 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 294 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 353
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 354 YLINARLTSEV 364
Score = 83 (34.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE + ER + IS D ++
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 188
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 189 Q----CVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQG 231
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 171 (65.3 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 49/171 (28%), Positives = 88/171 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER++ I+ D +
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNC--PERIVTITGP-TDAIFK--- 102
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A IA ++D NS ++ A T+RL++ SQ G LIG G I+++R S+
Sbjct: 103 -AFAMIAYKF-EEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIREST 159
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 160 GAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 113 (44.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 35/100 (35%), Positives = 51/100 (51%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA 231
+R+V I+G A+ A I + E+ + S SPA
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEEDIINSM-SNSPA 124
Score = 104 (41.7 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 295 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 354
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 355 YLINARLTSEV 365
Score = 83 (34.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE + ER + IS D ++
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 188
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 189 Q----CVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQG 231
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 171 (65.3 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 49/171 (28%), Positives = 88/171 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER++ I+ D +
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNC--PERIVTITGP-TDAIFK--- 102
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A IA ++D NS ++ A T+RL++ SQ G LIG G I+++R S+
Sbjct: 103 -AFAMIAYKF-EEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIREST 159
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 160 GAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 113 (44.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 35/100 (35%), Positives = 51/100 (51%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA 231
+R+V I+G A+ A I + E+ + S SPA
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEEDIINSM-SNSPA 124
Score = 104 (41.7 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 295 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 354
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 355 YLINARLTSEV 365
Score = 83 (34.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE + ER + IS D ++
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 188
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 189 Q----CVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQG 231
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 171 (65.3 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 49/171 (28%), Positives = 88/171 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER++ I+ D +
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNC--PERIVTITGP-TDAIFK--- 102
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A IA ++D NS ++ A T+RL++ SQ G LIG G I+++R S+
Sbjct: 103 -AFAMIAYKF-EEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIREST 159
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 160 GAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 113 (44.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 35/100 (35%), Positives = 51/100 (51%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA 231
+R+V I+G A+ A I + E+ + S SPA
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEEDIINSM-SNSPA 124
Score = 104 (41.7 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 295 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 354
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 355 YLINARLTSEV 365
Score = 83 (34.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE + ER + IS D ++
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 188
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 189 Q----CVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQG 231
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 171 (65.3 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 49/171 (28%), Positives = 88/171 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER++ I+ D +
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNC--PERIVTITGP-TDAIFK--- 102
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A IA ++D NS ++ A T+RL++ SQ G LIG G I+++R S+
Sbjct: 103 -AFAMIAYKF-EEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIREST 159
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 160 GAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 113 (44.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 35/100 (35%), Positives = 51/100 (51%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA 231
+R+V I+G A+ A I + E+ + S SPA
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEEDIINSM-SNSPA 124
Score = 104 (41.7 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 295 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 354
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 355 YLINARLTSEV 365
Score = 83 (34.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE + ER + IS D ++
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 188
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 189 Q----CVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQG 231
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 178 (67.7 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 52/178 (29%), Positives = 97/178 (54%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEER-VIIISSKD 103
++++ + ++I S +IG+VIGK G I+ IR+ H++ VI +++ +
Sbjct: 312 SRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATE 371
Query: 104 N-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
+ D++ S A A+ L+L++ ++ + KV ++LL++ GC+IG SG
Sbjct: 372 SPDDLKSMAVEAV-----LLLQEKINDEDEDKVK--------MQLLVSSKVIGCIIGKSG 418
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + A I I N P CA + D +V+ISG+V V +AL++I +LR++
Sbjct: 419 SIISEIRKRTKADIHISKGNNTPKCADPN--DELVEISGEVSNVRDALIQIVLRLRDD 474
Score = 153 (58.9 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 62/217 (28%), Positives = 97/217 (44%)
Query: 28 KRRREDGEIEGSDPKRRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXX 85
+RRR E S+ K+ D V++RI+ PS +G VIGK G I IR+E
Sbjct: 23 QRRRLSYE---SEEKKIDNKDDLVVVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKV 79
Query: 86 XXXXXRHEERVIII--SSKDNDNVVS------DAENALQQIAALILKDDDSNSEASKVAA 137
ERVI I S + ++V D L A +LK D+ + AA
Sbjct: 80 VDPFPGCSERVITIFCSVSEKKDIVDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAA 139
Query: 138 GHVAANT-----IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL-PLCASAH 191
+ + RLL+ SQ +IG SG I+ +R + A + +++ + P A
Sbjct: 140 ENTKIDRDDFRECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAM 199
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
+ D +V ISG+ +V AL + + + PR+ I +
Sbjct: 200 DFDNIVMISGETESVKKALFAVSAIMYKVSPREQIPL 236
Score = 95 (38.5 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I + VG ++GR G N+ IR SGAMI++ K R G+++Q A+
Sbjct: 575 TMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQKRTAE 634
Query: 313 QRVDEYIYS 321
+I S
Sbjct: 635 NLFQAFIMS 643
Score = 79 (32.9 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 236 AIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQK 295
A+ Q + D V ++L+S ++G +IG+ GS IS IR + A I + G K
Sbjct: 383 AVLLLQEKINDEDEDKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPK 442
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 158 (60.7 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 49/180 (27%), Positives = 93/180 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC--PERIITLAGPTN-------- 66
Query: 113 NALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQV 225
S+GA + + A + LP + ++R + I+G +++ + +I L ++PP+ V
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV 178
Score = 107 (42.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 106 (42.4 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 240 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 299
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 300 ISLAQYLINVRLSSE 314
Score = 74 (31.1 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
A V R++VP+ Q G +IGK G +I++IRE
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
>UNIPROTKB|B4DXP5 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K
UniGene:Hs.546271 HGNC:HGNC:8648 ChiTaRS:PCBP2 EMBL:AK302067
IPI:IPI00900327 SMR:B4DXP5 STRING:B4DXP5 Ensembl:ENST00000552819
UCSC:uc001sdf.4 Uniprot:B4DXP5
Length = 322
Score = 158 (60.7 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 49/180 (27%), Positives = 93/180 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC--PERIITLAGPTN-------- 66
Query: 113 NALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQV 225
S+GA + + A + LP + ++R + I+G +++ + +I L ++PP+ V
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV 178
Score = 107 (42.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 106 (42.4 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 241 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 300
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 301 ISLAQYLINVRLSSE 315
Score = 74 (31.1 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
A V R++VP+ Q G +IGK G +I++IRE
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
>UNIPROTKB|Q15366 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0016071 "mRNA metabolic process"
evidence=NAS] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IPI] [GO:0050687 "negative regulation of defense response
to virus" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032480 "negative
regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 Reactome:REACT_6900 GO:GO:0005654 GO:GO:0043161
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0045087 EMBL:CH471054
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 EMBL:AC068889
GO:GO:0000398 EMBL:AC023509 GO:GO:0032480 GO:GO:0050687
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
EMBL:X78136 EMBL:AB188306 EMBL:AK292141 EMBL:AB208825 EMBL:BC001155
EMBL:BC071942 EMBL:BC107688 IPI:IPI00012066 IPI:IPI00216689
IPI:IPI00470509 IPI:IPI00791223 IPI:IPI00796337 PIR:S65679
RefSeq:NP_001092090.1 RefSeq:NP_001122383.1 RefSeq:NP_001122384.1
RefSeq:NP_001122385.1 RefSeq:NP_001122386.1 RefSeq:NP_005007.2
RefSeq:NP_114366.1 UniGene:Hs.546271 PDB:2AXY PDB:2JZX PDB:2P2R
PDB:2PQU PDB:2PY9 PDBsum:2AXY PDBsum:2JZX PDBsum:2P2R PDBsum:2PQU
PDBsum:2PY9 ProteinModelPortal:Q15366 SMR:Q15366 DIP:DIP-58934N
IntAct:Q15366 MINT:MINT-96192 STRING:Q15366 PhosphoSite:Q15366
DMDM:6707736 PaxDb:Q15366 PeptideAtlas:Q15366 PRIDE:Q15366
DNASU:5094 Ensembl:ENST00000359282 Ensembl:ENST00000359462
Ensembl:ENST00000439930 Ensembl:ENST00000447282
Ensembl:ENST00000546463 Ensembl:ENST00000548933
Ensembl:ENST00000552296 GeneID:5094 KEGG:hsa:5094 UCSC:uc001sdl.4
CTD:5094 GeneCards:GC12P053844 HGNC:HGNC:8648 HPA:HPA038356
MIM:601210 neXtProt:NX_Q15366 PharmGKB:PA32987 InParanoid:Q15366
KO:K13162 OMA:CVVMLEL ChiTaRS:PCBP2 EvolutionaryTrace:Q15366
GenomeRNAi:5094 NextBio:19648 ArrayExpress:Q15366 Bgee:Q15366
CleanEx:HS_PCBP2 Genevestigator:Q15366 GermOnline:ENSG00000197111
Uniprot:Q15366
Length = 365
Score = 158 (60.7 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 49/180 (27%), Positives = 93/180 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC--PERIITLAGPTN-------- 66
Query: 113 NALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQV 225
S+GA + + A + LP + ++R + I+G +++ + +I L ++PP+ V
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV 178
Score = 108 (43.1 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 29/94 (30%), Positives = 47/94 (50%)
Query: 234 YSAIRPAQPFVE-----PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+S I + P V+ SA + E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 265 FSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA 324
Query: 289 GGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
R + GSA ++LA+ ++ + S+
Sbjct: 325 NPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 358
Score = 107 (42.7 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 74 (31.1 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
A V R++VP+ Q G +IGK G +I++IRE
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
>RGD|1309626 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0050687 "negative regulation of defense response to virus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1309626 GO:GO:0003723 eggNOG:NOG315872
HOVERGEN:HBG053520 CTD:5094 KO:K13162 IPI:IPI00464805 EMBL:BC078906
RefSeq:NP_001013241.1 UniGene:Rn.106644 ProteinModelPortal:Q6AYU5
SMR:Q6AYU5 PRIDE:Q6AYU5 GeneID:363005 KEGG:rno:363005
UCSC:RGD:1309626 NextBio:682109 Genevestigator:Q6AYU5
Uniprot:Q6AYU5
Length = 365
Score = 158 (60.7 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 49/180 (27%), Positives = 93/180 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC--PERIITLAGPTN-------- 66
Query: 113 NALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQV 225
S+GA + + A + LP + ++R + I+G +++ + +I L ++PP+ V
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV 178
Score = 108 (43.1 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 29/94 (30%), Positives = 47/94 (50%)
Query: 234 YSAIRPAQPFVE-----PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+S I + P V+ SA + E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 265 FSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA 324
Query: 289 GGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
R + GSA ++LA+ ++ + S+
Sbjct: 325 NPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 358
Score = 107 (42.7 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 74 (31.1 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
A V R++VP+ Q G +IGK G +I++IRE
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
>UNIPROTKB|C9J0A4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00385206 ProteinModelPortal:C9J0A4 SMR:C9J0A4
STRING:C9J0A4 Ensembl:ENST00000471622 ArrayExpress:C9J0A4
Bgee:C9J0A4 Uniprot:C9J0A4
Length = 323
Score = 153 (58.9 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 49/188 (26%), Positives = 96/188 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +++IRE+ ER+ I+ +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSC--PERITTITGS-----TAAVF 73
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEKLRN 170
+A+ IA + D+D A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 74 HAVSMIAFKL--DEDLC--AAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISIS 229
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 130 TTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYH 183
Query: 230 PAYNYSAI 237
P+ + +
Sbjct: 184 PSLSLGTV 191
Score = 111 (44.1 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 34/95 (35%), Positives = 48/95 (50%)
Query: 222 PRQVISISPAYNYSAIRPAQPFVEP---TSADYVTFEMLISESLVGGLIGRCGSNISRIR 278
P +V + ++ A+ A P V P + E L+ L+G +IGR GS IS IR
Sbjct: 210 PAEVTKLQQLSSH-AVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIR 268
Query: 279 NESGAMIKVYGGKGEQK-HRHIQFGGSAQQVALAK 312
SGA IK+ G + E RH+ GS +ALA+
Sbjct: 269 QMSGAHIKI-GNQAEGAGERHVTITGSPVSIALAQ 302
>UNIPROTKB|F1SFQ4 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 CTD:5094 KO:K13162
OMA:CVVMLEL EMBL:CU928648 RefSeq:NP_001231441.1 UniGene:Ssc.4977
Ensembl:ENSSSCT00000000294 GeneID:397665 KEGG:ssc:397665
ArrayExpress:F1SFQ4 Uniprot:F1SFQ4
Length = 353
Score = 158 (60.7 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 49/180 (27%), Positives = 93/180 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC--PERIITLAGPTN-------- 66
Query: 113 NALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQV 225
S+GA + + A + LP + ++R + I+G +++ + +I L ++PP+ V
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV 178
Score = 107 (42.7 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 106 (42.4 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 272 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 331
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 332 ISLAQYLINVRLSSE 346
Score = 74 (31.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
A V R++VP+ Q G +IGK G +I++IRE
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
>UNIPROTKB|I3LRN5 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 OMA:MSSSDAG
EMBL:FP102591 Ensembl:ENSSSCT00000026653 Uniprot:I3LRN5
Length = 404
Score = 153 (58.9 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 49/188 (26%), Positives = 96/188 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +++IRE+ ER+ I+ +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSC--PERITTITGS-----TAAVF 73
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEKLRN 170
+A+ IA + D+D A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 74 HAVSMIAFKL--DEDLC--AAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISIS 229
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 130 TTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYH 183
Query: 230 PAYNYSAI 237
P+ + +
Sbjct: 184 PSLSLGTV 191
Score = 114 (45.2 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 35/96 (36%), Positives = 48/96 (50%)
Query: 222 PRQVISISPAYNYSAIRPAQPFVEPTSADYVTF----EMLISESLVGGLIGRCGSNISRI 277
P +V + + A+ A P + P D T E L+ L+G +IGR GS IS I
Sbjct: 210 PAEVTKLQQLSGH-AVPFASPSMVPAGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEI 268
Query: 278 RNESGAMIKVYGGKGEQK-HRHIQFGGSAQQVALAK 312
R SGA IK+ G + E RH+ GS +ALA+
Sbjct: 269 RQMSGAHIKI-GNQAEGAGERHVTITGSPVSIALAQ 303
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 157 (60.3 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 46/161 (28%), Positives = 82/161 (50%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER++ I+ D +
Sbjct: 25 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNC--PERIVTITGP-TDAIFK--- 78
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A IA ++D NS ++ A T+RL++ SQ G LIG G I+++R S+
Sbjct: 79 -AFAMIAYKF-EEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIREST 135
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
GA + + A + LP + ++R V ISG A++ + +I
Sbjct: 136 GAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQI 170
Score = 113 (44.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 35/100 (35%), Positives = 51/100 (51%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 11 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 63
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA 231
+R+V I+G A+ A I + E+ + S SPA
Sbjct: 64 --ERIVTITGPTDAIFKAFAMIAYKFEEDIINSM-SNSPA 100
Score = 104 (41.7 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 246 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 305
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 306 YLINARLTSEV 316
Score = 78 (32.5 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE + ER + IS D ++
Sbjct: 106 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 164
Query: 109 SDAENALQQIAALILK 124
++QI ++L+
Sbjct: 165 Q----CVKQICVVMLE 176
>UNIPROTKB|E2RG64 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 KO:K13162
CTD:57060 OMA:MSSSDAG EMBL:AAEX03012201 RefSeq:XP_849987.1
Ensembl:ENSCAFT00000015946 GeneID:476603 KEGG:cfa:476603
NextBio:20852230 Uniprot:E2RG64
Length = 403
Score = 153 (58.9 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 49/188 (26%), Positives = 96/188 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +++IRE+ ER+ I+ +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSC--PERITTITGS-----TAAVF 73
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEKLRN 170
+A+ IA + D+D A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 74 HAVSMIAFKL--DEDLC--AAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISIS 229
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 130 TTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYH 183
Query: 230 PAYNYSAI 237
P+ + +
Sbjct: 184 PSLSLGTV 191
Score = 113 (44.8 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQK-HRHIQ 300
P ++P A + E L+ L+G +IGR GS IS IR SGA IK+ G + E RH+
Sbjct: 233 PGLDP-GAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GNQAEGAGERHVT 290
Query: 301 FGGSAQQVALAK 312
GS +ALA+
Sbjct: 291 ITGSPVSIALAQ 302
Score = 101 (40.6 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 38/160 (23%), Positives = 74/160 (46%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE + ER + +S D ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVP-DAII 160
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ----N 164
++QI A+IL +S + + + H + + +L++ +Q + G G
Sbjct: 161 L----CVRQICAVIL---ESPPKGATIPY-HPSLSLGTVLLSANQGFSVQGQYGAVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP-LCASAHESDRVVQISGDV 203
+ KL+ SG + +P+ +P L A S + + D+
Sbjct: 213 VTKLQQLSGHAVPFASPSMVPGLDPGAQTSSQEFLVPNDL 252
Score = 91 (37.1 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 27/96 (28%), Positives = 48/96 (50%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + P +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCP--------ERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA + RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGNVSRP 100
>UNIPROTKB|Q0VCU0 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162 EMBL:BC120009
IPI:IPI00707807 RefSeq:NP_001068751.1 UniGene:Bt.7587
ProteinModelPortal:Q0VCU0 SMR:Q0VCU0 PRIDE:Q0VCU0
Ensembl:ENSBTAT00000024779 GeneID:506889 KEGG:bta:506889 CTD:57060
InParanoid:Q0VCU0 OMA:MSSSDAG OrthoDB:EOG48D0VR NextBio:20867786
Uniprot:Q0VCU0
Length = 403
Score = 153 (58.9 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 49/188 (26%), Positives = 96/188 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +++IRE+ ER+ I+ +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSC--PERITTITGS-----TAAVF 73
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEKLRN 170
+A+ IA + D+D A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 74 HAVSMIAFKL--DEDLC--AAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISIS 229
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 130 TTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYH 183
Query: 230 PAYNYSAI 237
P+ + +
Sbjct: 184 PSLSLGTV 191
Score = 113 (44.8 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQK-HRHIQ 300
P ++P S + E L+ L+G +IGR GS IS IR SGA IK+ G + E RH+
Sbjct: 233 PGLDP-STQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GNQAEGAGERHVT 290
Query: 301 FGGSAQQVALAK 312
GS +ALA+
Sbjct: 291 ITGSPVSIALAQ 302
Score = 99 (39.9 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 38/160 (23%), Positives = 74/160 (46%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE + ER + +S D ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVP-DAII 160
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ----N 164
++QI A+IL +S + + + H + + +L++ +Q + G G
Sbjct: 161 L----CVRQICAVIL---ESPPKGATIPY-HPSLSLGTVLLSTNQGFSVQGQYGTVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP-LCASAHESDRVVQISGDV 203
+ KL+ SG + +P+ +P L S S + + D+
Sbjct: 213 VTKLQQLSGHAVPFASPSMVPGLDPSTQTSSQEFLVPNDL 252
Score = 91 (37.1 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 27/96 (28%), Positives = 48/96 (50%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + P +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCP--------ERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA + RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGNVSRP 100
>MGI|MGI:1890471 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890471 GO:GO:0005737 GO:GO:0003677
GO:GO:0003723 GO:GO:0030529 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162
CTD:57060 OrthoDB:EOG48D0VR EMBL:AF176328 EMBL:BC010694
IPI:IPI00118718 RefSeq:NP_067542.3 UniGene:Mm.286394
ProteinModelPortal:P57724 SMR:P57724 STRING:P57724
PhosphoSite:P57724 PaxDb:P57724 PRIDE:P57724
Ensembl:ENSMUST00000024260 GeneID:59092 KEGG:mmu:59092
InParanoid:P57724 NextBio:314742 Bgee:P57724 CleanEx:MM_PCBP4
Genevestigator:P57724 GermOnline:ENSMUSG00000023495 Uniprot:P57724
Length = 403
Score = 151 (58.2 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 49/188 (26%), Positives = 95/188 (50%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +++IRE+ ER+ I+ +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSC--PERITTITGS-----TAAVF 73
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEKLRN 170
+A+ IA + D+D A+ G V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 74 HAVSMIAFKL--DEDLC--AAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISIS 229
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 130 TTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYH 183
Query: 230 PAYNYSAI 237
P+ + +
Sbjct: 184 PSLSLGTV 191
Score = 115 (45.5 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 35/95 (36%), Positives = 48/95 (50%)
Query: 222 PRQVISISPAYNYSAIRPAQPFVEP---TSADYVTFEMLISESLVGGLIGRCGSNISRIR 278
P +V + + A+ A P V P S + E L+ L+G +IGR GS IS IR
Sbjct: 210 PAEVTKLQQLSGH-AVPFASPSVVPGMDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIR 268
Query: 279 NESGAMIKVYGGKGEQK-HRHIQFGGSAQQVALAK 312
SGA IK+ G + E RH+ GS +ALA+
Sbjct: 269 QMSGAHIKI-GNQAEGAGERHVTITGSPVSIALAQ 302
>RGD|1307910 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0006977
"DNA damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=ISO] [GO:0007050 "cell
cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307910 GO:GO:0003723
GeneTree:ENSGT00550000074311 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR IPI:IPI00366708 RefSeq:NP_001178812.1
UniGene:Rn.40405 Ensembl:ENSRNOT00000017139 GeneID:363133
KEGG:rno:363133 UCSC:RGD:1307910 NextBio:682555 Uniprot:D3ZCS3
Length = 403
Score = 151 (58.2 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 49/188 (26%), Positives = 95/188 (50%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +++IRE+ ER+ I+ +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSC--PERITTITGS-----TAAVF 73
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEKLRN 170
+A+ IA + D+D A+ G V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 74 HAVSMIAFKL--DEDLC--AAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISIS 229
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 130 TTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYH 183
Query: 230 PAYNYSAI 237
P+ + +
Sbjct: 184 PSLSLGTV 191
Score = 115 (45.5 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 35/95 (36%), Positives = 48/95 (50%)
Query: 222 PRQVISISPAYNYSAIRPAQPFVEP---TSADYVTFEMLISESLVGGLIGRCGSNISRIR 278
P +V + + A+ A P V P S + E L+ L+G +IGR GS IS IR
Sbjct: 210 PAEVTKLQQLSGH-AVPFASPSVVPGLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIR 268
Query: 279 NESGAMIKVYGGKGEQK-HRHIQFGGSAQQVALAK 312
SGA IK+ G + E RH+ GS +ALA+
Sbjct: 269 QMSGAHIKI-GNQAEGAGERHVTITGSPVSIALAQ 302
>ZFIN|ZDB-GENE-040426-2122 [details] [associations]
symbol:zgc:65870 "zgc:65870" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-040426-2122
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CU856621
EMBL:AL954840 EMBL:CABZ01011786 EMBL:CABZ01011787 EMBL:CABZ01011788
EMBL:CABZ01011789 EMBL:CABZ01011790 EMBL:CU462880 EMBL:CU469461
IPI:IPI01016643 Ensembl:ENSDART00000137945 Bgee:F1Q8M8
Uniprot:F1Q8M8
Length = 464
Score = 159 (61.0 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 49/174 (28%), Positives = 87/174 (50%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +++IREE ER+I I+ E
Sbjct: 30 RLLMHGKEVGSIIGKKGETVKRIREESSARINISEGSC--PERIITITGA--------TE 79
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ + +K ++ A+ VA G V + T+RL+I SQ G LIG G I+++R
Sbjct: 80 CVFRAFTMITIKLEEDL--AALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEIR 137
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+GA + + A + LP + ++R V ISG A++ + I + E+PP+
Sbjct: 138 EKTGAQVQV-AGDLLP-----NSTERGVTISGSQDAIIQCVKLICTVILESPPK 185
Score = 107 (42.7 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 247 TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQ 306
+S+ + E+LI L+G +IGR G+ I+ IR SGA IK+ RH+ GS
Sbjct: 275 SSSQTASQELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQLDSTSDRHVTITGSPI 334
Query: 307 QVALAK 312
+ LA+
Sbjct: 335 SINLAQ 340
Score = 86 (35.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+RLL+ G + G +IG G+ ++++R S A I I + P +R++ I+G
Sbjct: 28 TLRLLMHGKEVGSIIGKKGETVKRIREESSARINI-SEGSCP--------ERIITITGAT 78
Query: 204 PAVLNALVEIGNQLREN 220
V A I +L E+
Sbjct: 79 ECVFRAFTMITIKLEED 95
Score = 86 (35.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 247 TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSA 305
TS VT ++I S G LIG+ GS I IR ++GA ++V G R + GS
Sbjct: 106 TSKPPVTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAGDLLPNSTERGVTISGSQ 165
Query: 306 QQV 308
+
Sbjct: 166 DAI 168
Score = 75 (31.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
V R+++P+ Q G +IGK G +I++IRE+
Sbjct: 111 VTLRLVIPASQCGSLIGKGGSKIKEIREK 139
>UNIPROTKB|P57723 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR EMBL:AF176330 EMBL:AK023993 EMBL:BC003008
EMBL:BC004153 EMBL:BC017098 IPI:IPI00027973 IPI:IPI00386254
RefSeq:NP_001167571.1 RefSeq:NP_065151.2 RefSeq:NP_127501.1
RefSeq:NP_127503.1 UniGene:Hs.20930 ProteinModelPortal:P57723
SMR:P57723 IntAct:P57723 MINT:MINT-2873350 STRING:P57723
PhosphoSite:P57723 DMDM:12230429 PRIDE:P57723
Ensembl:ENST00000322099 Ensembl:ENST00000355852
Ensembl:ENST00000428823 Ensembl:ENST00000461554
Ensembl:ENST00000484633 GeneID:57060 KEGG:hsa:57060 UCSC:uc003dce.2
UCSC:uc003dck.2 GeneCards:GC03M051991 HGNC:HGNC:8652 MIM:608503
neXtProt:NX_P57723 PharmGKB:PA32991 GenomeRNAi:57060 NextBio:62848
ArrayExpress:P57723 Bgee:P57723 CleanEx:HS_PCBP4
Genevestigator:P57723 GermOnline:ENSG00000090097 Uniprot:P57723
Length = 403
Score = 153 (58.9 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 49/188 (26%), Positives = 96/188 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +++IRE+ ER+ I+ +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSC--PERITTITGS-----TAAVF 73
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEKLRN 170
+A+ IA + D+D A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 74 HAVSMIAFKL--DEDLC--AAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISIS 229
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 130 TTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYH 183
Query: 230 PAYNYSAI 237
P+ + +
Sbjct: 184 PSLSLGTV 191
Score = 111 (44.1 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 34/95 (35%), Positives = 48/95 (50%)
Query: 222 PRQVISISPAYNYSAIRPAQPFVEP---TSADYVTFEMLISESLVGGLIGRCGSNISRIR 278
P +V + ++ A+ A P V P + E L+ L+G +IGR GS IS IR
Sbjct: 210 PAEVTKLQQLSSH-AVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIR 268
Query: 279 NESGAMIKVYGGKGEQK-HRHIQFGGSAQQVALAK 312
SGA IK+ G + E RH+ GS +ALA+
Sbjct: 269 QMSGAHIKI-GNQAEGAGERHVTITGSPVSIALAQ 302
>ZFIN|ZDB-GENE-030131-563 [details] [associations]
symbol:pcbp2 "poly(rC) binding protein 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-563 GO:GO:0003723 GeneTree:ENSGT00550000074311
HOGENOM:HOG000182823 HOVERGEN:HBG053520 CTD:5094 KO:K13162
OMA:CVVMLEL HSSP:Q9UNW9 EMBL:CR848672 EMBL:BC045508 EMBL:BC066603
EMBL:AY398394 IPI:IPI00495300 RefSeq:NP_957486.1 UniGene:Dr.76907
SMR:Q7ZVK5 Ensembl:ENSDART00000025885 GeneID:321844 KEGG:dre:321844
InParanoid:Q7ZVK5 NextBio:20807553 Uniprot:Q7ZVK5
Length = 318
Score = 158 (60.7 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 45/173 (26%), Positives = 89/173 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER+I ++ +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC--PERIITLAGP-----TTAIF 69
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A I L++D S+S ++ A T+R+++ SQ G LIG G I+++R S+
Sbjct: 70 KAFSMIIEK-LEEDISSSMSNSTATSKPPV-TLRIVVPASQCGSLIGKGGCKIKEIREST 127
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 128 GAQVQV-AGDMLP-----NSTERAITIAGTPLSIIECVKQICVVMLESPPKGV 174
Score = 102 (41.0 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLREN 220
A+ A I +L E+
Sbjct: 66 TAIFKAFSMIIEKLEED 82
Score = 100 (40.3 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GS
Sbjct: 237 SAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSSDRQVTITGSPAS 296
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 297 ISLAEYLINARLSSE 311
Score = 75 (31.5 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
V RI+VP+ Q G +IGK G +I++IRE
Sbjct: 98 VTLRIVVPASQCGSLIGKGGCKIKEIRE 125
>UNIPROTKB|Q5E9A3 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
EMBL:BT021017 IPI:IPI00687560 RefSeq:NP_001015565.1 UniGene:Bt.4620
ProteinModelPortal:Q5E9A3 SMR:Q5E9A3 MINT:MINT-6732977
STRING:Q5E9A3 PRIDE:Q5E9A3 Ensembl:ENSBTAT00000011824 GeneID:509917
KEGG:bta:509917 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
InParanoid:Q5E9A3 KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K
NextBio:20869194 Uniprot:Q5E9A3
Length = 356
Score = 150 (57.9 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 47/182 (25%), Positives = 92/182 (50%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +++IREE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNC--PERIITLTGPTN-------- 66
Query: 113 NALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQVI 226
S+GA + + A + LP + ++R + I+G +V + +I L ++P +V+
Sbjct: 126 STGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVM 179
Query: 227 SI 228
+I
Sbjct: 180 TI 181
Score = 112 (44.5 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I +L+G +IGR G+NI+ IR SGA IK+ R + GSA ++LA+
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQ 340
Query: 313 QRVDEYIYSQ 322
++ + S+
Sbjct: 341 YLINARLSSE 350
Score = 102 (41.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
+A +G TIRLL+ G + G +IG G++++++R SGA I I N C
Sbjct: 2 DAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN----CP-- 55
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R++ ++G A+ A I ++L E+
Sbjct: 56 ---ERIITLTGPTNAIFKAFAMIIDKLEED 82
Score = 75 (31.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKD 103
A V R++VP+ Q G +IGK G +I++IRE + ER I I+
Sbjct: 93 ASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG-- 150
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKV 135
V ++QI L++ + S S +V
Sbjct: 151 ---VPQSVTECVKQIC-LVMLETLSQSPQGRV 178
>UNIPROTKB|J9P7Y9 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5093
KO:K12889 OMA:RNISERN EMBL:AAEX03007630 RefSeq:XP_538537.1
Ensembl:ENSCAFT00000005324 GeneID:481417 KEGG:cfa:481417
Uniprot:J9P7Y9
Length = 356
Score = 150 (57.9 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 47/182 (25%), Positives = 92/182 (50%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +++IREE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNC--PERIITLTGPTN-------- 66
Query: 113 NALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQVI 226
S+GA + + A + LP + ++R + I+G +V + +I L ++P +V+
Sbjct: 126 STGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVM 179
Query: 227 SI 228
+I
Sbjct: 180 TI 181
Score = 112 (44.5 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I +L+G +IGR G+NI+ IR SGA IK+ R + GSA ++LA+
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQ 340
Query: 313 QRVDEYIYSQ 322
++ + S+
Sbjct: 341 YLINARLSSE 350
Score = 102 (41.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
+A +G TIRLL+ G + G +IG G++++++R SGA I I N C
Sbjct: 2 DAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN----CP-- 55
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R++ ++G A+ A I ++L E+
Sbjct: 56 ---ERIITLTGPTNAIFKAFAMIIDKLEED 82
Score = 75 (31.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKD 103
A V R++VP+ Q G +IGK G +I++IRE + ER I I+
Sbjct: 93 ASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG-- 150
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKV 135
V ++QI L++ + S S +V
Sbjct: 151 ---VPQSVTECVKQIC-LVMLETLSQSPQGRV 178
>UNIPROTKB|Q15365 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9606
"Homo sapiens" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0016071 "mRNA metabolic process" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 GO:GO:0003697 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG315872 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K EMBL:X78137 EMBL:U24223
EMBL:Z29505 EMBL:BC039742 IPI:IPI00016610 RefSeq:NP_006187.2
UniGene:Hs.2853 PDB:1WVN PDB:1ZTG PDB:3VKE PDBsum:1WVN PDBsum:1ZTG
PDBsum:3VKE ProteinModelPortal:Q15365 SMR:Q15365 DIP:DIP-38136N
IntAct:Q15365 MINT:MINT-96267 STRING:Q15365 PhosphoSite:Q15365
DMDM:42560548 OGP:Q15365 REPRODUCTION-2DPAGE:IPI00016610
UCD-2DPAGE:Q15365 PaxDb:Q15365 PeptideAtlas:Q15365 PRIDE:Q15365
DNASU:5093 Ensembl:ENST00000303577 GeneID:5093 KEGG:hsa:5093
UCSC:uc002sgf.3 GeneCards:GC02P070314 HGNC:HGNC:8647 HPA:CAB037113
MIM:601209 neXtProt:NX_Q15365 PharmGKB:PA32986 InParanoid:Q15365
PhylomeDB:Q15365 ChiTaRS:PCBP1 EvolutionaryTrace:Q15365
GenomeRNAi:5093 NextBio:19644 ArrayExpress:Q15365 Bgee:Q15365
CleanEx:HS_PCBP1 Genevestigator:Q15365 GermOnline:ENSG00000169564
Uniprot:Q15365
Length = 356
Score = 150 (57.9 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 47/182 (25%), Positives = 92/182 (50%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +++IREE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNC--PERIITLTGPTN-------- 66
Query: 113 NALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQVI 226
S+GA + + A + LP + ++R + I+G +V + +I L ++P +V+
Sbjct: 126 STGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVM 179
Query: 227 SI 228
+I
Sbjct: 180 TI 181
Score = 112 (44.5 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I +L+G +IGR G+NI+ IR SGA IK+ R + GSA ++LA+
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQ 340
Query: 313 QRVDEYIYSQ 322
++ + S+
Sbjct: 341 YLINARLSSE 350
Score = 102 (41.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
+A +G TIRLL+ G + G +IG G++++++R SGA I I N C
Sbjct: 2 DAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN----CP-- 55
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R++ ++G A+ A I ++L E+
Sbjct: 56 ---ERIITLTGPTNAIFKAFAMIIDKLEED 82
Score = 75 (31.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKD 103
A V R++VP+ Q G +IGK G +I++IRE + ER I I+
Sbjct: 93 ASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG-- 150
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKV 135
V ++QI L++ + S S +V
Sbjct: 151 ---VPQSVTECVKQIC-LVMLETLSQSPQGRV 178
>UNIPROTKB|I3LEC2 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0003697 GeneTree:ENSGT00550000074311 KO:K12889
OMA:RNISERN EMBL:CU928518 RefSeq:XP_003125105.1
Ensembl:ENSSSCT00000028976 GeneID:100511501 KEGG:ssc:100511501
Uniprot:I3LEC2
Length = 356
Score = 150 (57.9 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 47/182 (25%), Positives = 92/182 (50%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +++IREE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNC--PERIITLTGPTN-------- 66
Query: 113 NALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQVI 226
S+GA + + A + LP + ++R + I+G +V + +I L ++P +V+
Sbjct: 126 STGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVM 179
Query: 227 SI 228
+I
Sbjct: 180 TI 181
Score = 112 (44.5 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I +L+G +IGR G+NI+ IR SGA IK+ R + GSA ++LA+
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQ 340
Query: 313 QRVDEYIYSQ 322
++ + S+
Sbjct: 341 YLINARLSSE 350
Score = 102 (41.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
+A +G TIRLL+ G + G +IG G++++++R SGA I I N C
Sbjct: 2 DAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN----CP-- 55
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R++ ++G A+ A I ++L E+
Sbjct: 56 ---ERIITLTGPTNAIFKAFAMIIDKLEED 82
Score = 75 (31.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKD 103
A V R++VP+ Q G +IGK G +I++IRE + ER I I+
Sbjct: 93 ASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG-- 150
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKV 135
V ++QI L++ + S S +V
Sbjct: 151 ---VPQSVTECVKQIC-LVMLETLSQSPQGRV 178
>MGI|MGI:1345635 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008494 "translation activator
activity" evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1345635 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 GO:GO:0008494 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K12889
OMA:RNISERN OrthoDB:EOG46WZ8K ChiTaRS:PCBP1 EMBL:AF139894
EMBL:AF139895 EMBL:BC069915 EMBL:BC004793 IPI:IPI00128904
RefSeq:NP_035995.1 UniGene:Mm.274146 ProteinModelPortal:P60335
SMR:P60335 IntAct:P60335 STRING:P60335 PhosphoSite:P60335
REPRODUCTION-2DPAGE:IPI00128904 REPRODUCTION-2DPAGE:P60335
PaxDb:P60335 PRIDE:P60335 Ensembl:ENSMUST00000053015 GeneID:23983
KEGG:mmu:23983 InParanoid:P60335 NextBio:303869 Bgee:P60335
CleanEx:MM_PCBP1 Genevestigator:P60335
GermOnline:ENSMUSG00000051695 Uniprot:P60335
Length = 356
Score = 150 (57.9 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 47/182 (25%), Positives = 92/182 (50%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +++IREE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNC--PERIITLTGPTN-------- 66
Query: 113 NALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQVI 226
S+GA + + A + LP + ++R + I+G +V + +I L ++P +V+
Sbjct: 126 STGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVM 179
Query: 227 SI 228
+I
Sbjct: 180 TI 181
Score = 112 (44.5 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I +L+G +IGR G+NI+ IR SGA IK+ R + GSA ++LA+
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQ 340
Query: 313 QRVDEYIYSQ 322
++ + S+
Sbjct: 341 YLINARLSSE 350
Score = 102 (41.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
+A +G TIRLL+ G + G +IG G++++++R SGA I I N C
Sbjct: 2 DAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN----CP-- 55
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R++ ++G A+ A I ++L E+
Sbjct: 56 ---ERIITLTGPTNAIFKAFAMIIDKLEED 82
Score = 75 (31.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKD 103
A V R++VP+ Q G +IGK G +I++IRE + ER I I+
Sbjct: 93 ASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG-- 150
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKV 135
V ++QI L++ + S S +V
Sbjct: 151 ---VPQSVTECVKQIC-LVMLETLSQSPQGRV 178
>RGD|1561319 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1561319 GO:GO:0003723 GO:GO:0003697 OMA:RNISERN
OrthoDB:EOG46WZ8K IPI:IPI00882480 ProteinModelPortal:D3ZS68
SMR:D3ZS68 PRIDE:D3ZS68 Ensembl:ENSRNOT00000023806 UCSC:RGD:1561319
Uniprot:D3ZS68
Length = 356
Score = 150 (57.9 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 47/182 (25%), Positives = 92/182 (50%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +++IREE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNC--PERIITLTGPTN-------- 66
Query: 113 NALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQVI 226
S+GA + + A + LP + ++R + I+G +V + +I L ++P +V+
Sbjct: 126 STGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVM 179
Query: 227 SI 228
+I
Sbjct: 180 TI 181
Score = 112 (44.5 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I +L+G +IGR G+NI+ IR SGA IK+ R + GSA ++LA+
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQ 340
Query: 313 QRVDEYIYSQ 322
++ + S+
Sbjct: 341 YLINARLSSE 350
Score = 102 (41.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
+A +G TIRLL+ G + G +IG G++++++R SGA I I N C
Sbjct: 2 DAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN----CP-- 55
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R++ ++G A+ A I ++L E+
Sbjct: 56 ---ERIITLTGPTNAIFKAFAMIIDKLEED 82
Score = 75 (31.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKD 103
A V R++VP+ Q G +IGK G +I++IRE + ER I I+
Sbjct: 93 ASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG-- 150
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKV 135
V ++QI L++ + S S +V
Sbjct: 151 ---VPQSVTECVKQIC-LVMLETLSQSPQGRV 178
>UNIPROTKB|H3BRU6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 Ensembl:ENST00000562264 Uniprot:H3BRU6
Length = 301
Score = 150 (57.9 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
Identities = 48/174 (27%), Positives = 89/174 (51%)
Query: 59 RQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENALQQI 118
+++G +IGK+G ++K+REE ER+I ++ N A+ +
Sbjct: 4 KEVGSIIGKKGESVKKMREESGARINISEGNC--PERIITLAGPTN---------AIFKA 52
Query: 119 AALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGAT 175
A+I L++D S+S + AA T+RL++ SQ G LIG G I+++R S+GA
Sbjct: 53 FAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQ 111
Query: 176 IVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQV 225
+ + A + LP + ++R + I+G +++ + +I L ++PP+ V
Sbjct: 112 VQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV 159
Score = 108 (43.1 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
Identities = 29/94 (30%), Positives = 47/94 (50%)
Query: 234 YSAIRPAQPFVE-----PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+S I + P V+ SA + E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 201 FSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA 260
Query: 289 GGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
R + GSA ++LA+ ++ + S+
Sbjct: 261 NPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 294
Score = 86 (35.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
G + G +IG G++++K+R SGA I I N C +R++ ++G A+ A
Sbjct: 3 GKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPTNAIFKAF 53
Query: 211 VEIGNQLRENPPRQVISISPAYNYSAIRP 239
I ++L E+ IS S + +A RP
Sbjct: 54 AMIIDKLEED-----ISSSMTNSTAASRP 77
Score = 74 (31.1 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
A V R++VP+ Q G +IGK G +I++IRE
Sbjct: 74 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 106
>UNIPROTKB|F8VRG9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022480
ProteinModelPortal:F8VRG9 SMR:F8VRG9 PRIDE:F8VRG9
Ensembl:ENST00000552083 ArrayExpress:F8VRG9 Bgee:F8VRG9
Uniprot:F8VRG9
Length = 323
Score = 121 (47.7 bits), Expect = 1.6e-15, Sum P(3) = 1.6e-15
Identities = 31/102 (30%), Positives = 58/102 (56%)
Query: 124 KDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
++D S+S + AA T+RL++ SQ G LIG G I+++R S+GA + + A +
Sbjct: 41 EEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDM 98
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 99 LP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 135
Score = 106 (42.4 bits), Expect = 1.6e-15, Sum P(3) = 1.6e-15
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 242 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 301
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 302 ISLAQYLINVRLSSE 316
Score = 82 (33.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQD-VLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
S K+ RE+ +I S A ++ V R++VP+ Q G +IGK G +I++IRE
Sbjct: 35 SVKKMREE-DISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 86
Score = 76 (31.8 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 26/96 (27%), Positives = 45/96 (46%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRN---SSGATIVILA---PNQLPLCASAHESDRVV 197
TIRLL+ G + G +IG G++++K+R SS T A P L L A + ++
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREEDISSSMTNSTAASRPPVTLRLVVPASQCGSLI 74
Query: 198 QISG----DVPAVLNALVEIGNQLRENPPRQVISIS 229
G ++ A V++ + N + I+I+
Sbjct: 75 GKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 110
Score = 74 (31.1 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 26/84 (30%), Positives = 37/84 (44%)
Query: 126 DDSNSEASKVAAG-HVAANTI--RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
+ S+ E AG +A T L I GC+IG G I ++R SGA I I P
Sbjct: 226 ESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV 285
Query: 183 QLPLCASAHESDRVVQISGDVPAV 206
+ +DR V I+G ++
Sbjct: 286 E-------GSTDRQVTITGSAASI 302
Score = 70 (29.7 bits), Expect = 1.6e-15, Sum P(3) = 1.6e-15
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREE 78
R+++ +++G +IGK+G ++K+REE
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREE 42
>UNIPROTKB|J9P8W8 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014817 Ensembl:ENSCAFT00000021540 OMA:QTSSHEM
Uniprot:J9P8W8
Length = 315
Score = 148 (57.2 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 44/176 (25%), Positives = 90/176 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER+I ++ N +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGAGINISEGNC--PERIITLAGPTNA-IFKAFA 73
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+ ++ +I S+S + AA T+RL++ SQ G LIG G I+++R S+
Sbjct: 74 MIIDKLEEVI-----SSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIREST 127
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
GA + + A + LP + ++R + I+G +++ + +I + + PP + ++I
Sbjct: 128 GAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLD-PPSKGVTI 176
Score = 109 (43.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 33/96 (34%), Positives = 51/96 (53%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGAGINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E VIS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEE-----VISSSMTNSTAASRP 96
Score = 106 (42.4 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 234 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 293
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 294 ISLAQYLINVRLSSE 308
Score = 74 (31.1 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
A V R++VP+ Q G +IGK G +I++IRE
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
>UNIPROTKB|E1BVU6 [details] [associations]
symbol:LOC100858906 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:AADN02031620
EMBL:AADN02034412 EMBL:AADN02034413 EMBL:AADN02034414
IPI:IPI00682929 Ensembl:ENSGALT00000007004 Uniprot:E1BVU6
Length = 339
Score = 148 (57.2 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 47/171 (27%), Positives = 84/171 (49%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK G RE+ ER++ I+ D +
Sbjct: 17 RLLMHGKEVGSIIGKMGCLHVVTREQSGARINISEGNC--PERIVTITGP-TDAIFK--- 70
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A IA ++D +NS ++ A T+RL++ SQ G LIG G I+++R S+
Sbjct: 71 -AFAMIAYKF-EEDITNSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIREST 127
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 128 GAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 104 (41.7 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 263 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 322
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 323 YLINARLTSEV 333
Score = 83 (34.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 30/89 (33%), Positives = 41/89 (46%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKMGCLHVVTREQSGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 83 (34.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE + ER + IS D ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 156
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 157 Q----CVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQG 199
>FB|FBgn0015907 [details] [associations]
symbol:bl "bancal" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=ISS] [GO:0003729
"mRNA binding" evidence=NAS;TAS] [GO:0005634 "nucleus"
evidence=IC;IDA;TAS] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000785 "chromatin" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=TAS]
[GO:0045165 "cell fate commitment" evidence=TAS] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0007446 "imaginal disc growth"
evidence=TAS] [GO:0008134 "transcription factor binding"
evidence=TAS] [GO:0035107 "appendage morphogenesis" evidence=TAS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0008283 GO:GO:0003729 GO:GO:0000785 GO:GO:0030529
GO:GO:0008134 GO:GO:0045165 GO:GO:0000381 GO:GO:0007446 HSSP:P61978
GO:GO:0035062 FlyBase:FBgn0015907 ChiTaRS:bl GO:GO:0035107
EMBL:AF275629 ProteinModelPortal:Q7KHL0 SMR:Q7KHL0 STRING:Q7KHL0
PRIDE:Q7KHL0 InParanoid:Q7KHL0 ArrayExpress:Q7KHL0 Bgee:Q7KHL0
Uniprot:Q7KHL0
Length = 508
Score = 112 (44.5 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 30/93 (32%), Positives = 46/93 (49%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI S AGC+IG GQ I+++R+ G + + N P +DRVVQ G
Sbjct: 97 VRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQS 151
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAI 237
V+ A+ E+ R+ P + I N+ +
Sbjct: 152 QVIEAVREVITLTRDTPIKGAIHNYDPMNFDRV 184
Score = 99 (39.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+LI S AG +IG GQ+I+K+R AT+ + +Q P +R +QIS D+
Sbjct: 24 TVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSV-DDSQGP--------ERTIQISADI 74
Query: 204 PAVLNALVEI 213
+ L + E+
Sbjct: 75 ESTLEIITEM 84
Score = 98 (39.6 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
S + A+ V GH N+ ++ I AG +IG G I ++RN S A I I P LP
Sbjct: 406 SPNAATNVPQGHDPNNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEP--LP-- 461
Query: 188 ASAHESDRVVQISG 201
+ +DR++ ISG
Sbjct: 462 ---NSNDRIITISG 472
Score = 94 (38.1 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 245 EPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGS 304
+P ++ VT I + L G +IG+ G I RIRNES A I + R I G+
Sbjct: 418 DPNNSTQVT----IPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGT 473
Query: 305 AQQVALAKQRVDEYIYSQ 322
+Q+ +A+ + + ++ +
Sbjct: 474 PKQIQMAQYLLQQSVHEE 491
Score = 92 (37.4 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 28/75 (37%), Positives = 39/75 (52%)
Query: 28 KRRREDGEIEG-SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXX 86
KR D E EG D KR ++++ + RI++PS G VIGK G IQK+R +
Sbjct: 2 KREMND-EGEGPQDQKRNRRSEETV-RILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVD 59
Query: 87 XXXXRHEERVIIISS 101
+ ER I IS+
Sbjct: 60 DS--QGPERTIQISA 72
>UNIPROTKB|K7GQW0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035698 Uniprot:K7GQW0
Length = 477
Score = 205 (77.2 bits), Expect = 3.3e-14, P = 3.3e-14
Identities = 77/310 (24%), Positives = 138/310 (44%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G + A+ D RI+VP++ +G +IGKEG I+
Sbjct: 81 VSSPSPPQRAQRGDHSSREQGHAPGGSSQ--ARQIDFPLRILVPTQFVGAIIGKEGLTIK 138
Query: 74 KIREEXXXXXXXXXX--XXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++ E+ V I ++ + + A + I ++ K+ D
Sbjct: 139 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 192
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 193 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 240
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQPFVE-PTSA 249
+R + + G V A NA +EI +LRE +++++ Y S++ P F P
Sbjct: 241 NPERTITVKGTVEACANAEIEIMKKLREAFENDMLAVNTHSGYFSSLYPPHQFGPFPHHH 300
Query: 250 DYVTFEML---ISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG-EQKHRHIQFGGSA 305
Y E++ I VG +IG+ G++I ++ +GA IK+ +G + R + G
Sbjct: 301 SYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPP 360
Query: 306 QQVALAKQRV 315
+ A+ R+
Sbjct: 361 EAQFKAQGRI 370
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 179 (68.1 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 51/173 (29%), Positives = 92/173 (53%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDN-DN 106
++V FR++ P+ ++G +IGK G ++ ++ E EER+I+IS+++N +
Sbjct: 274 EEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLER 333
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
S A++ + ++ I+ + E S AA RLL+ G L+G G I
Sbjct: 334 RHSLAQDGVMRVHNRIV---EIGFEPS-------AAVVARLLVHSPYIGRLLGKGGHLIS 383
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++R ++GA+I + A +Q S H D +VQ+ G++ V +AL +I +LRE
Sbjct: 384 EMRRATGASIRVFAKDQATKYESQH--DEIVQVIGNLKTVQDALFQILCRLRE 434
Score = 145 (56.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 37/126 (29%), Positives = 69/126 (54%)
Query: 100 SSKDNDNVVSDAENALQQI-AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
S D++ S A+ AL ++ ++ DD + + ++ G + R+++ G+Q L+
Sbjct: 105 SGGDDEEAPSSAQMALLRVFERIVFGDDAATVDGDELDKGE-SEGLCRMIVRGNQVDYLM 163
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ I+K+R SGA + I + +Q+P CA D V+Q++G +V AL+ + N L+
Sbjct: 164 SKGGKMIQKIREDSGAIVRISSTDQIPPCA--FPGDVVIQMNGKFSSVKKALLLVTNCLQ 221
Query: 219 EN--PP 222
E+ PP
Sbjct: 222 ESGAPP 227
Score = 94 (38.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHI 299
PF P + V F +L VG LIG+ G+ + ++NESGA IKV + + R I
Sbjct: 266 PFNRPVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERII 323
Score = 73 (30.8 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 245 EPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG----KGEQKHRHI- 299
EP++A V +L+ +G L+G+ G IS +R +GA I+V+ K E +H I
Sbjct: 355 EPSAA--VVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIV 412
Query: 300 QFGGSAQQV 308
Q G+ + V
Sbjct: 413 QVIGNLKTV 421
Score = 64 (27.6 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQR 314
E++I ++ +G + G SN++ I+ SGA + V+ K + G++ Q A+
Sbjct: 552 EIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVVVSGTSDQAHFAQSL 611
Query: 315 VDEYI 319
+ +I
Sbjct: 612 LHAFI 616
>UNIPROTKB|Q5RB68 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005856 "cytoskeleton"
evidence=ISS] [GO:0048027 "mRNA 5'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HOVERGEN:HBG052725 CTD:10644
GO:GO:0044430 EMBL:CR858786 RefSeq:NP_001125573.1 UniGene:Pab.13543
ProteinModelPortal:Q5RB68 SMR:Q5RB68 PRIDE:Q5RB68 GeneID:100172487
KEGG:pon:100172487 InParanoid:Q5RB68 Uniprot:Q5RB68
Length = 556
Score = 198 (74.8 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 76/310 (24%), Positives = 138/310 (44%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G + A+ D RI+VP++ +G +IGKEG I+
Sbjct: 160 VSSPSPPQRAQRGDHSSREQGHAPGGTSQ--ARQIDFPLRILVPTQFVGAIIGKEGLTIK 217
Query: 74 KIREEXXXXXXXXXX--XXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++ E+ V I ++ + + A + I ++ K+ D
Sbjct: 218 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 271
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 272 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 319
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQPFVE-PTSA 249
+R + + G V A +A +EI +LRE +++++ Y S++ P F P
Sbjct: 320 NPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQFGPFPHHH 379
Query: 250 DYVTFEML---ISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG-EQKHRHIQFGGSA 305
Y E++ I VG +IG+ G++I ++ +GA IK+ +G + R + G
Sbjct: 380 SYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPP 439
Query: 306 QQVALAKQRV 315
+ A+ R+
Sbjct: 440 EAQFKAQGRI 449
>TAIR|locus:2831364 [details] [associations]
symbol:AT4G18375 "AT4G18375" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161548 EMBL:AL021710
KO:K13162 EMBL:AY133701 EMBL:BT001108 IPI:IPI00539414
IPI:IPI00548636 RefSeq:NP_193572.1 RefSeq:NP_849406.1
UniGene:At.32914 ProteinModelPortal:P58223 SMR:P58223
MEROPS:S01.441 PaxDb:P58223 EnsemblPlants:AT4G18375.2 GeneID:827566
KEGG:ath:AT4G18375 GeneFarm:2264 TAIR:At4g18375 eggNOG:NOG297635
HOGENOM:HOG000084632 InParanoid:P58223 OMA:ANICISK PhylomeDB:P58223
ProtClustDB:CLSN2686050 Genevestigator:P58223 GermOnline:AT4G18375
Uniprot:P58223
Length = 606
Score = 158 (60.7 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 60/211 (28%), Positives = 99/211 (46%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIII--SSKDNDNV 107
V++RI+ P +G VIGK G I IR +RVI I S K+
Sbjct: 36 VVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEE 95
Query: 108 V----SD------AENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+ S+ A++AL ++ I+ D+ N+ + V RLL+ SQ+ L
Sbjct: 96 IGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDD--NKECRLLVPFSQSSSL 153
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQL-PLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
IG +G+NI+++R + A++ +++ + P A E D VV ISG+ +V AL +
Sbjct: 154 IGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAI 213
Query: 217 LRENPPRQVISISPAYNYSAIRPAQPFVEPT 247
+ + PR+ I P + S PA + P+
Sbjct: 214 MYKINPRENI---PLDSTSQDVPAASVIVPS 241
Score = 121 (47.7 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 37/137 (27%), Positives = 74/137 (54%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXR--HEERVIIISSK 102
+++++++F+++ P I +VIGK G I++IRE + +E VII+++
Sbjct: 307 SRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTAT 366
Query: 103 DN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
++ D++ S A A+ L+L++ ++ +A V ++LL++ GC+IG S
Sbjct: 367 ESPDDMKSMAVEAV-----LLLQEYINDEDAENVK--------MQLLVSSKVIGCVIGKS 413
Query: 162 GQNIEKLRNSSGATIVI 178
G I ++R + A I I
Sbjct: 414 GSVINEIRKRTNANICI 430
Score = 106 (42.4 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
++LL++ GC+IG SG I ++R + A I C S + D +V++SG+V
Sbjct: 397 MQLLVSSKVIGCVIGKSGSVINEIRKRTNANI----------CISKGKKDDLVEVSGEVS 446
Query: 205 AVLNALVEIGNQLREN 220
+V +AL++I +LRE+
Sbjct: 447 SVRDALIQIVLRLRED 462
Score = 85 (35.0 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 236 AIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK 291
A+ Q ++ A+ V ++L+S ++G +IG+ GS I+ IR + A I + GK
Sbjct: 379 AVLLLQEYINDEDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKGK 434
Score = 82 (33.9 bits), Expect = 9.0e-13, Sum P(2) = 9.0e-13
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQR 314
E+LI + ++G+ G N+ IR SGAMI++ K G+ +Q+ A+
Sbjct: 539 EILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMRCAENL 598
Query: 315 VDEYIYS 321
V ++ S
Sbjct: 599 VQAFVMS 605
>TAIR|locus:2056951 [details] [associations]
symbol:AT2G03110 "AT2G03110" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:BT012113 EMBL:BT012369 IPI:IPI00542292 RefSeq:NP_178410.2
UniGene:At.23438 ProteinModelPortal:Q6NLG5 SMR:Q6NLG5
EnsemblPlants:AT2G03110.1 GeneID:814840 KEGG:ath:AT2G03110
TAIR:At2g03110 InParanoid:Q6NLG5 PhylomeDB:Q6NLG5
Genevestigator:Q6NLG5 Uniprot:Q6NLG5
Length = 153
Score = 172 (65.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 48/135 (35%), Positives = 71/135 (52%)
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALIL----KDDDSNSEASKVAAGHVAANTIRLL 148
EER I DN++ V A +AL ++ +++ DDD ++ + + G T+R+L
Sbjct: 22 EERNRI--EDDNEDFVCPAFDALFKVHDMVVVEEFDDDDDYNDNDEYSEGQTVV-TVRML 78
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
+ Q G LIG G I+ LRN + A I + N LP+CA A D ++QI GD AV
Sbjct: 79 VPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRNDN-LPMCALALSHDELLQIIGDPSAVRE 137
Query: 209 ALVEIGNQLRENPPR 223
AL ++ L NP R
Sbjct: 138 ALYQVAFLLYNNPSR 152
>WB|WBGene00017816 [details] [associations]
symbol:F26B1.2b species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0009792
GO:GO:0006974 GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 113 (44.8 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 31/91 (34%), Positives = 47/91 (51%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ S AG LIG +G I++LR A + I CA +DRV+ SG+
Sbjct: 127 VRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTG-----CAPG-STDRVLITSGEQK 180
Query: 205 AVLNALVEIGNQLRENPPR-QVISISPAYNY 234
VL + E+ +L+E P + PA+NY
Sbjct: 181 NVLGIIEEVMKELKEIPIKGSATPYLPAFNY 211
Score = 96 (38.9 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T ++ I L G +IGR G I+RIR ESGA I + G Q R I G+ QQ+ A+
Sbjct: 318 TAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNG-QPERIITIKGTEQQIHSAQ 376
Query: 313 QRVDEYI 319
+ + +
Sbjct: 377 YLLQQCV 383
Score = 96 (38.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLL++ AG +IG G+NI++LR A + Q+P ++ +RV ++ D
Sbjct: 52 VRLLVSSKSAGAIIGKGGENIKRLRAEFNAHV------QVP---DSNTPERVCTVTADEK 102
Query: 205 AVLNALVEIGNQLREN 220
VLN L ++ +L +N
Sbjct: 103 TVLNILKDVLPRLEDN 118
Score = 68 (29.0 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 15/72 (20%), Positives = 35/72 (48%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R++V G +IG+ G +I+++RE+ ++I+S + NV+ E
Sbjct: 128 RMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVLITSGEQKNVLGIIE 187
Query: 113 NALQQIAALILK 124
++++ + +K
Sbjct: 188 EVMKELKEIPIK 199
Score = 63 (27.2 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R++V S+ G +IGK G I+++R E ERV +++ D V++ +
Sbjct: 53 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNT--PERVCTVTA-DEKTVLNILK 109
Query: 113 NALQQI 118
+ L ++
Sbjct: 110 DVLPRL 115
>UNIPROTKB|P91277 [details] [associations]
symbol:F26B1.2 "Protein F26B1.2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0009792 GO:GO:0006974
GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 113 (44.8 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 31/91 (34%), Positives = 47/91 (51%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ S AG LIG +G I++LR A + I CA +DRV+ SG+
Sbjct: 127 VRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTG-----CAPG-STDRVLITSGEQK 180
Query: 205 AVLNALVEIGNQLRENPPR-QVISISPAYNY 234
VL + E+ +L+E P + PA+NY
Sbjct: 181 NVLGIIEEVMKELKEIPIKGSATPYLPAFNY 211
Score = 96 (38.9 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T ++ I L G +IGR G I+RIR ESGA I + G Q R I G+ QQ+ A+
Sbjct: 318 TAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNG-QPERIITIKGTEQQIHSAQ 376
Query: 313 QRVDEYI 319
+ + +
Sbjct: 377 YLLQQCV 383
Score = 96 (38.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLL++ AG +IG G+NI++LR A + Q+P ++ +RV ++ D
Sbjct: 52 VRLLVSSKSAGAIIGKGGENIKRLRAEFNAHV------QVP---DSNTPERVCTVTADEK 102
Query: 205 AVLNALVEIGNQLREN 220
VLN L ++ +L +N
Sbjct: 103 TVLNILKDVLPRLEDN 118
Score = 68 (29.0 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 15/72 (20%), Positives = 35/72 (48%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R++V G +IG+ G +I+++RE+ ++I+S + NV+ E
Sbjct: 128 RMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVLITSGEQKNVLGIIE 187
Query: 113 NALQQIAALILK 124
++++ + +K
Sbjct: 188 EVMKELKEIPIK 199
Score = 63 (27.2 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R++V S+ G +IGK G I+++R E ERV +++ D V++ +
Sbjct: 53 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNT--PERVCTVTA-DEKTVLNILK 109
Query: 113 NALQQI 118
+ L ++
Sbjct: 110 DVLPRL 115
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 169 (64.5 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 49/176 (27%), Positives = 93/176 (52%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC--PERIITLAGPTN-------- 66
Query: 113 NALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 107 (42.7 bits), Expect = 0.00086, P = 0.00085
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
>MGI|MGI:1890358 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890358 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 CTD:10644 OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2
GO:GO:0044430 EMBL:AY531659 EMBL:AK170531 EMBL:CT009567
IPI:IPI00338748 IPI:IPI00761863 RefSeq:NP_898850.2
UniGene:Mm.489442 ProteinModelPortal:Q5SF07 SMR:Q5SF07
STRING:Q5SF07 PhosphoSite:Q5SF07 REPRODUCTION-2DPAGE:Q5SF07
PaxDb:Q5SF07 PRIDE:Q5SF07 Ensembl:ENSMUST00000100052 GeneID:319765
KEGG:mmu:319765 UCSC:uc007yrz.1 UCSC:uc007ysb.1 InParanoid:A6X8Z4
OMA:KQQEQKH NextBio:395368 Bgee:Q5SF07 Genevestigator:Q5SF07
GermOnline:ENSMUSG00000033581 Uniprot:Q5SF07
Length = 592
Score = 161 (61.7 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 57/220 (25%), Positives = 100/220 (45%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
V+ P P H R RE G GS + A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 160 VSSPSPPH-----RAREQGHGPGSSSQ--ARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 212
Query: 76 REEXXXXXXXXXX--XXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++ E+ V I ++ + + A + I ++ K+ D A
Sbjct: 213 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 266
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 267 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 314
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN 233
+R + + G + A NA +EI +LRE +++++ N
Sbjct: 315 ERTITVRGTIEACANAEIEIMKKLREAFENDMLAVNQQAN 354
Score = 73 (30.8 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 25/101 (24%), Positives = 46/101 (45%)
Query: 220 NPPRQVISISPAYNYSAIRPAQ---PFVEPTS-ADYVTFEMLISESLVGGLIGRCGSNIS 275
+PP + Y +S++ P PF S + T + I VG +IG+ G++I
Sbjct: 386 SPPYHPFATHSGY-FSSLYPHHHFGPFPHHHSYPEQETVSLFIPTQAVGAIIGKKGAHIK 444
Query: 276 RIRNESGAMIKVYGGKG-EQKHRHIQFGGSAQQVALAKQRV 315
++ +GA IK+ +G + R + G + A+ R+
Sbjct: 445 QLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 485
Score = 44 (20.5 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 243 FVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
F P + + + S G +IG+ G ++ ++N + A + V
Sbjct: 494 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIV 538
>TAIR|locus:2168367 [details] [associations]
symbol:RCF3 "AT5G53060" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AY062686
EMBL:BT008402 IPI:IPI00520369 RefSeq:NP_200118.3 UniGene:At.27262
ProteinModelPortal:Q8W4B1 SMR:Q8W4B1 IntAct:Q8W4B1 PaxDb:Q8W4B1
PRIDE:Q8W4B1 EnsemblPlants:AT5G53060.1 GeneID:835386
KEGG:ath:AT5G53060 TAIR:At5g53060 eggNOG:NOG293832
InParanoid:Q8W4B1 OMA:THIRILP PhylomeDB:Q8W4B1
ProtClustDB:CLSN2680526 Genevestigator:Q8W4B1 Uniprot:Q8W4B1
Length = 652
Score = 157 (60.3 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 58/189 (30%), Positives = 89/189 (47%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISS---KDNDNVV 108
+RI+ + G VIGK G I+ IR+ ER+I IS +D D +
Sbjct: 70 YRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDGRM 129
Query: 109 ---SDAENALQQIAALILKDD----------DSNSEASKVAAGHVAANTIRLLIAGSQAG 155
S A+ AL + IL+ + + + V G T RL+++ G
Sbjct: 130 PSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVT-RLVVSRMHVG 188
Query: 156 CLIGMSGQNIEKLRNSSGATIVILA-PNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
CL+G G+ IE++R + I IL + LP C S S+ +VQI G++ AV NAL +
Sbjct: 189 CLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSL--SEEIVQIVGELNAVKNALAIVS 246
Query: 215 NQLRENPPR 223
++LRE+ R
Sbjct: 247 SRLRESQHR 255
Score = 156 (60.0 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 48/175 (27%), Positives = 91/175 (52%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDN-D 105
+++++F+I+ P+ +I +V+G+ I ++ E +E++I ISS++ D
Sbjct: 322 SEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPD 381
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ A+ AL I I+ D + + T RLL+ + CL G +G ++
Sbjct: 382 DPFFPAQEALLHIQTQII---DLIPDKDNLI-------TTRLLVPSRDSICLEGKAG-SV 430
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
++ +G ++ ILA ++P CAS + D V+QI+G++ A ALVE+ LR +
Sbjct: 431 SEISRLTGTSVQILAREEIPRCASIN--DVVIQITGEIRAAREALVELTLLLRSH 483
Score = 77 (32.2 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 19/76 (25%), Positives = 41/76 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+++ E++V L+ + + +++I SGA + + + E+ I+ G+ +Q A+
Sbjct: 578 TLEVVLPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQAERAQ 637
Query: 313 QRVDEYIYSQLIQQAG 328
+ +I S IQ+ G
Sbjct: 638 SLLQGFILS--IQEDG 651
Score = 61 (26.5 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 233 NYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV---YG 289
NY+ PA P E ++ + F++L + ++G I ++NE G ++V
Sbjct: 306 NYAEEAPAVPVGENVYSEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVA 365
Query: 290 GKGEQ 294
G EQ
Sbjct: 366 GSDEQ 370
>TAIR|locus:2066020 [details] [associations]
symbol:AT2G22600 "AT2G22600" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002685 GO:GO:0003723 KO:K13162
IPI:IPI00526685 RefSeq:NP_850026.1 UniGene:At.52868
ProteinModelPortal:F4IJK5 SMR:F4IJK5 PRIDE:F4IJK5
EnsemblPlants:AT2G22600.1 GeneID:816791 KEGG:ath:AT2G22600
OMA:RVVCHAS Uniprot:F4IJK5
Length = 632
Score = 140 (54.3 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 29/76 (38%), Positives = 50/76 (65%)
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
+L +Q G ++G+ G+N+E +R +SGA I +L P P+C + ++D ++QI+GDV AV
Sbjct: 144 ILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP---PICGT--KNDELIQITGDVLAV 198
Query: 207 LNALVEIGNQLRENPP 222
ALV + + ++ N P
Sbjct: 199 KKALVMVSSYIQNNAP 214
Score = 140 (54.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 51/179 (28%), Positives = 90/179 (50%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDN-DNVV 108
V+F+II S G +IGK+G I+ ++ E ERV+ +S+++N ++
Sbjct: 277 VVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLESRY 336
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
S A+NAL + A ++ D + G + +LL+ A G +G N E +
Sbjct: 337 SHAQNALALVFARSVEIDVEKGLRPGLHNGAIVKT--KLLVPSHFANSFNG-NG-NREAI 392
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP-PRQVI 226
++GA + I NQ+ S E++ V++I G+ V AL + ++LREN P++V+
Sbjct: 393 I-ATGADVHISVGNQVLEWIS--ENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKVL 448
Score = 76 (31.8 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 227 SISPAYNYSAIRPAQPFVEPTSADY-VTFEMLISESLVGGLIGRCGSNISRIRNESGAMI 285
S+S A A P+ S + V F+++ + + GG+IG+ G+ I ++NE+GA I
Sbjct: 251 SLSNATEIVASNRHLPYDGGNSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASI 310
Query: 286 KV 287
V
Sbjct: 311 SV 312
Score = 73 (30.8 bits), Expect = 2.6e-11, Sum P(3) = 2.6e-11
Identities = 18/81 (22%), Positives = 36/81 (44%)
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQF 301
P + S +T E+ + + +G L GR G+ + ++ SGA + V G + +
Sbjct: 554 PRSKGVSVRKITLELAVEKDALGSLYGRDGTGVDNLQQISGANVDVKDPTGTEAT--VLI 611
Query: 302 GGSAQQVALAKQRVDEYIYSQ 322
G+ +Q A ++ + Q
Sbjct: 612 SGNPEQARTAMSLIESILTDQ 632
Score = 53 (23.7 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
+ R++ + IG +IG G+ + K+R E
Sbjct: 24 ETAIRVVCHASVIGGIIGSNGYVVSKLRRE 53
>UNIPROTKB|P61978 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IMP] [GO:0072369
"regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048260 "positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IMP] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0019048 GO:GO:0007165
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000978
GO:GO:0001077 GO:GO:0000790 GO:GO:0003697 EMBL:CH471089
GO:GO:0048260 GO:GO:0000398 GO:GO:0071013 EMBL:AL354733
GO:GO:0045716 GO:GO:0010988 CTD:3190 eggNOG:NOG285495
HOVERGEN:HBG051916 KO:K12886 OMA:KALRTDX OrthoDB:EOG49KFRD
GO:GO:0072369 InterPro:IPR012987 Pfam:PF08067 EMBL:S74678
EMBL:X72727 EMBL:AB209562 EMBL:BC000355 EMBL:BC014980
IPI:IPI00216049 IPI:IPI00216746 IPI:IPI00807545 PIR:S43363
RefSeq:NP_002131.2 RefSeq:NP_112552.1 RefSeq:NP_112553.1
UniGene:Hs.522257 PDB:1J5K PDB:1KHM PDB:1ZZI PDB:1ZZJ PDB:1ZZK
PDBsum:1J5K PDBsum:1KHM PDBsum:1ZZI PDBsum:1ZZJ PDBsum:1ZZK
ProteinModelPortal:P61978 SMR:P61978 DIP:DIP-31805N IntAct:P61978
MINT:MINT-225422 STRING:P61978 PhosphoSite:P61978 DMDM:48429103
SWISS-2DPAGE:P61978 PaxDb:P61978 PRIDE:P61978 DNASU:3190
Ensembl:ENST00000351839 Ensembl:ENST00000360384
Ensembl:ENST00000376263 Ensembl:ENST00000376264
Ensembl:ENST00000376268 Ensembl:ENST00000376281 GeneID:3190
KEGG:hsa:3190 UCSC:uc004ang.4 UCSC:uc004anh.4 GeneCards:GC09M086582
HGNC:HGNC:5044 HPA:CAB004435 HPA:CAB016225 HPA:HPA007644 MIM:600712
neXtProt:NX_P61978 PharmGKB:PA162391350 ChEMBL:CHEMBL3469
ChiTaRS:HNRNPK EvolutionaryTrace:P61978 GenomeRNAi:3190
NextBio:12686 PMAP-CutDB:P61978 ArrayExpress:P61978 Bgee:P61978
CleanEx:HS_HNRNPK Genevestigator:P61978 GermOnline:ENSG00000165119
Uniprot:P61978
Length = 463
Score = 137 (53.3 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 57/206 (27%), Positives = 90/206 (43%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXX 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 XXXXRHEERVIIISSKDND------NVVSDAENALQQIAALILKDDDSNSEASK-VAAGH 139
ER++ IS+ ++ E LQ + S+A + + H
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 140 VAANT----IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
+ +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CCP-HSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 116 (45.9 bits), Expect = 0.00055, P = 0.00055
Identities = 41/148 (27%), Positives = 70/148 (47%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + P+ +S E R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV--PD-----SSGPE--RILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISPAYNYSAIRPAQPFVEPTSADY-VTFEMLISE 260
+ L +I L E P S P + A+ + +D+ +LI +
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLES-DAVECLN-YQHYKGSDFDCELRLLIHQ 153
Query: 261 SLVGGLIGRCGSNISRIRNESGAMIKVY 288
SL GG+IG G+ I +R + IK++
Sbjct: 154 SLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 89 (36.4 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
+T ++ I + L G +IG+ G I +IR+ESGA IK+ + R I G+ Q+ A
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 312 K 312
+
Sbjct: 448 Q 448
>MGI|MGI:99894 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010988
"regulation of low-density lipoprotein particle clearance"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:99894 GO:GO:0005737 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOVERGEN:HBG051916 KO:K12886
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:L31961
EMBL:AK011428 EMBL:AK051313 EMBL:AK078777 EMBL:AK088462
EMBL:BC006694 IPI:IPI00224575 IPI:IPI00890005 IPI:IPI00990152
RefSeq:NP_079555.1 UniGene:Mm.142872 ProteinModelPortal:P61979
SMR:P61979 IntAct:P61979 STRING:P61979 PhosphoSite:P61979
REPRODUCTION-2DPAGE:IPI00223253 REPRODUCTION-2DPAGE:P61979
PaxDb:P61979 PRIDE:P61979 Ensembl:ENSMUST00000043269
Ensembl:ENSMUST00000116403 Ensembl:ENSMUST00000176207 GeneID:15387
KEGG:mmu:15387 UCSC:uc007qtw.1 UCSC:uc007qty.1 NextBio:288062
Bgee:P61979 Genevestigator:P61979 GermOnline:ENSMUSG00000063902
Uniprot:P61979
Length = 463
Score = 137 (53.3 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 57/206 (27%), Positives = 90/206 (43%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXX 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 XXXXRHEERVIIISSKDND------NVVSDAENALQQIAALILKDDDSNSEASK-VAAGH 139
ER++ IS+ ++ E LQ + S+A + + H
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 140 VAANT----IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
+ +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CCP-HSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 116 (45.9 bits), Expect = 0.00055, P = 0.00055
Identities = 41/148 (27%), Positives = 70/148 (47%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + P+ +S E R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV--PD-----SSGPE--RILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISPAYNYSAIRPAQPFVEPTSADY-VTFEMLISE 260
+ L +I L E P S P + A+ + +D+ +LI +
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLES-DAVECLN-YQHYKGSDFDCELRLLIHQ 153
Query: 261 SLVGGLIGRCGSNISRIRNESGAMIKVY 288
SL GG+IG G+ I +R + IK++
Sbjct: 154 SLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 89 (36.4 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
+T ++ I + L G +IG+ G I +IR+ESGA IK+ + R I G+ Q+ A
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 312 K 312
+
Sbjct: 448 Q 448
>RGD|71058 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010988 "regulation of low-density
lipoprotein particle clearance" evidence=IEA;ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0045716
"positive regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:71058 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 HOVERGEN:HBG051916
KO:K12886 InterPro:IPR012987 Pfam:PF08067 EMBL:D17711
IPI:IPI00780608 PIR:S41495 RefSeq:NP_476482.1 UniGene:Rn.11854
ProteinModelPortal:P61980 SMR:P61980 IntAct:P61980 MINT:MINT-1505757
STRING:P61980 PhosphoSite:P61980 World-2DPAGE:0004:P61980
PRIDE:P61980 Ensembl:ENSRNOT00000025916 GeneID:117282
KEGG:rno:117282 UCSC:RGD:71058 InParanoid:P61980 NextBio:620239
ArrayExpress:P61980 Genevestigator:P61980
GermOnline:ENSRNOG00000019113 Uniprot:P61980
Length = 463
Score = 137 (53.3 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 57/206 (27%), Positives = 90/206 (43%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXX 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 XXXXRHEERVIIISSKDND------NVVSDAENALQQIAALILKDDDSNSEASK-VAAGH 139
ER++ IS+ ++ E LQ + S+A + + H
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 140 VAANT----IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
+ +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CCP-HSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 116 (45.9 bits), Expect = 0.00055, P = 0.00055
Identities = 41/148 (27%), Positives = 70/148 (47%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + P+ +S E R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV--PD-----SSGPE--RILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISPAYNYSAIRPAQPFVEPTSADY-VTFEMLISE 260
+ L +I L E P S P + A+ + +D+ +LI +
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLES-DAVECLN-YQHYKGSDFDCELRLLIHQ 153
Query: 261 SLVGGLIGRCGSNISRIRNESGAMIKVY 288
SL GG+IG G+ I +R + IK++
Sbjct: 154 SLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 89 (36.4 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
+T ++ I + L G +IG+ G I +IR+ESGA IK+ + R I G+ Q+ A
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 312 K 312
+
Sbjct: 448 Q 448
>UNIPROTKB|F1PDI8 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 CTD:10644 OMA:KQQEQKH
EMBL:AAEX03017290 EMBL:AAEX03017291 EMBL:AAEX03017292
RefSeq:XP_535832.3 Ensembl:ENSCAFT00000021148 GeneID:478662
KEGG:cfa:478662 Uniprot:F1PDI8
Length = 531
Score = 155 (59.6 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 57/223 (25%), Positives = 99/223 (44%)
Query: 13 VSVVTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRI 72
VS T P+ R RE G G + A+ D RI+VP++ +G +IGKEG I
Sbjct: 92 VSSPTPPQ-RAQRGDHSSREQGHAPGGSSQ--ARQIDFPLRILVPTQFVGAIIGKEGLTI 148
Query: 73 QKIREEXXXXXXXXXX--XXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNS 130
+ I ++ E+ V I ++ + + A + I ++ K+ D
Sbjct: 149 KNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETK 202
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
A ++ +++L G LIG G+N++K+ + +G I I + L S
Sbjct: 203 LAEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SI 250
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN 233
+ +R + + G V A NA VEI +LRE +++++ N
Sbjct: 251 YNPERTITVKGTVEACANAEVEIMKKLREAFENDMLAVNQQAN 293
Score = 69 (29.3 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 25/99 (25%), Positives = 42/99 (42%)
Query: 221 PPRQVISISPAYNYSAIRPAQ--PFVEPTS-ADYVTFEMLISESLVGGLIGRCGSNISRI 277
PP + Y S P Q PF S + + I VG +IG+ G++I ++
Sbjct: 326 PPYHPFATHSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQL 385
Query: 278 RNESGAMIKVYGGKG-EQKHRHIQFGGSAQQVALAKQRV 315
+GA IK+ +G + R + G + A+ R+
Sbjct: 386 ARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 424
Score = 44 (20.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 243 FVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
F P + + + S G +IG+ G ++ ++N + A + V
Sbjct: 433 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIV 477
>UNIPROTKB|K7GQ87 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035397 Uniprot:K7GQ87
Length = 498
Score = 154 (59.3 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 55/222 (24%), Positives = 98/222 (44%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G + A+ D RI+VP++ +G +IGKEG I+
Sbjct: 59 VSSPSPPQRAQRGDHSSREQGHAPGGSSQ--ARQIDFPLRILVPTQFVGAIIGKEGLTIK 116
Query: 74 KIREEXXXXXXXXXX--XXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++ E+ V I ++ + + A + I ++ K+ D
Sbjct: 117 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 170
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 171 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 218
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN 233
+R + + G V A NA +EI +LRE +++++ N
Sbjct: 219 NPERTITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQAN 260
Score = 69 (29.3 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 25/99 (25%), Positives = 42/99 (42%)
Query: 221 PPRQVISISPAYNYSAIRPAQ--PFVEPTS-ADYVTFEMLISESLVGGLIGRCGSNISRI 277
PP + Y S P Q PF S + + I VG +IG+ G++I ++
Sbjct: 293 PPYHPFATHSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQL 352
Query: 278 RNESGAMIKVYGGKG-EQKHRHIQFGGSAQQVALAKQRV 315
+GA IK+ +G + R + G + A+ R+
Sbjct: 353 ARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 391
Score = 44 (20.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 243 FVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
F P + + + S G +IG+ G ++ ++N + A + V
Sbjct: 400 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIV 444
>ASPGD|ASPL0000075803 [details] [associations]
symbol:AN4546 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0043409 "negative regulation of MAPK cascade"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:BN001303 EMBL:AACD01000078
OrthoDB:EOG4Z65XM eggNOG:NOG315872 HOGENOM:HOG000184255
RefSeq:XP_662150.1 ProteinModelPortal:Q5B4I4
EnsemblFungi:CADANIAT00005892 GeneID:2872347 KEGG:ani:AN4546.2
OMA:AQANEKA Uniprot:Q5B4I4
Length = 542
Score = 147 (56.8 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 55/212 (25%), Positives = 99/212 (46%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXX 90
++G++E + AQ +L R IV S++ G +IGK G + +R+E
Sbjct: 208 DEGDLEVAPKTEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVP 267
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ +S A +A +L+ A ++ G + +N IR
Sbjct: 268 GVHDRVLTVTG-----ALSGTARAYALVAKGLLEG------APQMGMGGIVSNNGTHPIR 316
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 317 LLISHNQMGTIIGRQGLKIKHIQDASGVRMVA-QKEMLP-----QSTERIVEVQGTPEGI 370
Query: 207 LNALVEIGNQLRENPPRQVISISPAYNYSAIR 238
A+ EIG L ++ R +I YN A+R
Sbjct: 371 EKAIWEIGKCLIDDWQRGTGTI--LYN-PAVR 399
Score = 78 (32.5 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQK-HRHIQ 300
P V + T + I +VG +IGR G+ I+ IR SGA I + ++ R
Sbjct: 452 PLVTEDGEEIQTQNISIPADMVGCIIGRGGTKITEIRRSSGARISIAKAPHDETGERMFT 511
Query: 301 FGGSAQ 306
GSAQ
Sbjct: 512 IMGSAQ 517
>UNIPROTKB|F1NVW3 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0044430 "cytoskeletal part" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:AADN02024285 EMBL:AADN02024286
IPI:IPI00581668 Ensembl:ENSGALT00000022629 Uniprot:F1NVW3
Length = 573
Score = 158 (60.7 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 55/230 (23%), Positives = 97/230 (42%)
Query: 6 EITVNPTVSVVTEPEP-RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKV 64
+++ P V + P P R G RE G G + K D R++VP++ +G +
Sbjct: 124 KVSYIPDEEVSSPPPPQRSRRGGHASREQGSSPGGSSQ--PKQLDFPLRMLVPTQFVGAI 181
Query: 65 IGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVVSDAENALQQIAALIL 123
IGKEG I+ + ++ E+ I I + A + I ++
Sbjct: 182 IGKEGLTIKNLTKQTQSKVDIHRKENAGAAEKPITIHATPEG-----CSEACRMILDIMQ 236
Query: 124 KDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
K+ D A ++ +++L S G LIG G+N++K+ +G I I
Sbjct: 237 KEADETKSAEEIP--------LKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQD 288
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN 233
L + + +R + + G A NA VEI +LRE +++++ N
Sbjct: 289 LTI----YNPERTITVKGSTEACSNAEVEIMKKLREAYENDIVAVNQQAN 334
Score = 66 (28.3 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 23/89 (25%), Positives = 39/89 (43%)
Query: 228 ISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+S Y S + A P P V + I VG +IG+ G +I ++ +GA IK+
Sbjct: 379 LSGLYGASPVG-AFPHQHPLPEQEVV-NLFIPTQAVGAIIGKKGQHIKQLARFAGASIKI 436
Query: 288 YGGKG-EQKHRHIQFGGSAQQVALAKQRV 315
+G + R + G + A+ R+
Sbjct: 437 APAEGPDATERMVIITGPPEAQFKAQGRI 465
Score = 38 (18.4 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 243 FVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
F P + + + G +IG+ G ++ ++N + A + V
Sbjct: 474 FFNPKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEVIV 518
>RGD|1305614 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0044430 "cytoskeletal part"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:1305614
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 EMBL:CH473999
GeneTree:ENSGT00530000063171 CTD:10644 OrthoDB:EOG4FBHSJ
GO:GO:0044430 IPI:IPI00559516 RefSeq:NP_001257527.1
UniGene:Rn.17318 Ensembl:ENSRNOT00000036958 GeneID:303824
KEGG:rno:303824 UCSC:RGD:1305614 NextBio:652153 Uniprot:D3ZWZ6
Length = 592
Score = 152 (58.6 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 55/220 (25%), Positives = 100/220 (45%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
++ P P H R RE G GS + A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 160 LSSPSPPH-----RAREQGHGPGSSSQ--ARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 212
Query: 76 REEXXXXXXXXXX--XXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++ E+ V I ++ + + A + I ++ K+ D A
Sbjct: 213 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 266
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 267 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 314
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN 233
+R + + G + A +A +EI +LRE +++++ N
Sbjct: 315 ERTITVKGTIEACASAEMEIMKKLREAFENDMLAVNQQAN 354
Score = 73 (30.8 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 25/101 (24%), Positives = 46/101 (45%)
Query: 220 NPPRQVISISPAYNYSAIRPAQ---PFVEPTS-ADYVTFEMLISESLVGGLIGRCGSNIS 275
+PP + Y +S++ P PF S + T + I VG +IG+ G++I
Sbjct: 386 SPPYHPFATHSGY-FSSLYPHHHFGPFPHHHSYPEQETVSLFIPTQAVGAIIGKKGAHIK 444
Query: 276 RIRNESGAMIKVYGGKG-EQKHRHIQFGGSAQQVALAKQRV 315
++ +GA IK+ +G + R + G + A+ R+
Sbjct: 445 QLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 485
Score = 47 (21.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 18/87 (20%), Positives = 39/87 (44%)
Query: 243 FVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHI--Q 300
F P + + + S G +IG+ G ++ ++N + A + V + ++ + +
Sbjct: 494 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVR 553
Query: 301 FGGSAQQVALAKQRVDEYIYSQLIQQA 327
G A++++ E I Q+ QQA
Sbjct: 554 IIGHFFASQTAQRKIRE-IVQQVKQQA 579
>UNIPROTKB|K7GKD3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000033522 Uniprot:K7GKD3
Length = 520
Score = 154 (59.3 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 55/222 (24%), Positives = 98/222 (44%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G + A+ D RI+VP++ +G +IGKEG I+
Sbjct: 81 VSSPSPPQRAQRGDHSSREQGHAPGGSSQ--ARQIDFPLRILVPTQFVGAIIGKEGLTIK 138
Query: 74 KIREEXXXXXXXXXX--XXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++ E+ V I ++ + + A + I ++ K+ D
Sbjct: 139 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 192
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 193 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 240
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN 233
+R + + G V A NA +EI +LRE +++++ N
Sbjct: 241 NPERTITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQAN 282
Score = 69 (29.3 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 25/99 (25%), Positives = 42/99 (42%)
Query: 221 PPRQVISISPAYNYSAIRPAQ--PFVEPTS-ADYVTFEMLISESLVGGLIGRCGSNISRI 277
PP + Y S P Q PF S + + I VG +IG+ G++I ++
Sbjct: 315 PPYHPFATHSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQL 374
Query: 278 RNESGAMIKVYGGKG-EQKHRHIQFGGSAQQVALAKQRV 315
+GA IK+ +G + R + G + A+ R+
Sbjct: 375 ARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 413
Score = 44 (20.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 243 FVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
F P + + + S G +IG+ G ++ ++N + A + V
Sbjct: 422 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIV 466
>UNIPROTKB|F1SFK0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:CU582974 Ensembl:ENSSSCT00000012907
Uniprot:F1SFK0
Length = 524
Score = 154 (59.3 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 55/222 (24%), Positives = 98/222 (44%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G + A+ D RI+VP++ +G +IGKEG I+
Sbjct: 85 VSSPSPPQRAQRGDHSSREQGHAPGGSSQ--ARQIDFPLRILVPTQFVGAIIGKEGLTIK 142
Query: 74 KIREEXXXXXXXXXX--XXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++ E+ V I ++ + + A + I ++ K+ D
Sbjct: 143 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 196
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 197 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 244
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN 233
+R + + G V A NA +EI +LRE +++++ N
Sbjct: 245 NPERTITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQAN 286
Score = 69 (29.3 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 25/99 (25%), Positives = 42/99 (42%)
Query: 221 PPRQVISISPAYNYSAIRPAQ--PFVEPTS-ADYVTFEMLISESLVGGLIGRCGSNISRI 277
PP + Y S P Q PF S + + I VG +IG+ G++I ++
Sbjct: 319 PPYHPFATHSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQL 378
Query: 278 RNESGAMIKVYGGKG-EQKHRHIQFGGSAQQVALAKQRV 315
+GA IK+ +G + R + G + A+ R+
Sbjct: 379 ARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 417
Score = 44 (20.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 243 FVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
F P + + + S G +IG+ G ++ ++N + A + V
Sbjct: 426 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIV 470
>UNIPROTKB|Q9UNW9 [details] [associations]
symbol:NOVA2 "RNA-binding protein Nova-2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:AF083898
GO:GO:0005634 GO:GO:0003723 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 KO:K14944 EMBL:U70477 EMBL:AC006540
IPI:IPI00156005 RefSeq:NP_002507.1 UniGene:Hs.375439 PDB:1DTJ
PDB:1EC6 PDBsum:1DTJ PDBsum:1EC6 ProteinModelPortal:Q9UNW9
SMR:Q9UNW9 STRING:Q9UNW9 PhosphoSite:Q9UNW9 DMDM:33516944
PRIDE:Q9UNW9 DNASU:4858 Ensembl:ENST00000263257 GeneID:4858
KEGG:hsa:4858 UCSC:uc002pdv.2 CTD:4858 GeneCards:GC19M046442
HGNC:HGNC:7887 HPA:HPA045607 MIM:601991 neXtProt:NX_Q9UNW9
PharmGKB:PA31689 InParanoid:Q9UNW9 OMA:TPPEVVC PhylomeDB:Q9UNW9
EvolutionaryTrace:Q9UNW9 GenomeRNAi:4858 NextBio:18718
ArrayExpress:Q9UNW9 Bgee:Q9UNW9 CleanEx:HS_NOVA2
Genevestigator:Q9UNW9 GermOnline:ENSG00000104967 Uniprot:Q9UNW9
Length = 492
Score = 148 (57.2 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 61/261 (23%), Positives = 111/261 (42%)
Query: 20 EPRHDVSGKRRREDG-EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
EP S KR E E+ + + + ++++PS G +IGK G I ++++E
Sbjct: 2 EPEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKE 61
Query: 79 XXXXXXXXXXXXRHE---ERVIIIS-SKDNDNVV-SDAENALQQIAALILKDDDSNSEAS 133
+ ERV ++ + + N V S +++I + K + N
Sbjct: 62 TGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQP 121
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+ A +L++ S AG +IG G ++ + SGA + + +Q P + E
Sbjct: 122 QTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQE- 177
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQ-VISISPAYNYSAIRPAQPFVEP--TSAD 250
RVV +SG+ V A+ I +++E+P ++IS A + + P P + AD
Sbjct: 178 -RVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPAD 236
Query: 251 YVTFEMLISESLVGGLIGRCG 271
+ S + GL+G G
Sbjct: 237 VLPAAAAASAAAASGLLGPAG 257
Score = 117 (46.2 bits), Expect = 0.00047, P = 0.00047
Identities = 45/168 (26%), Positives = 80/168 (47%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++LI AG +IG GQ I +L+ +GATI + ++RV + G
Sbjct: 35 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF----YPGTTERVCLVQGTAE 90
Query: 205 AVLNALVE-IGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A LNA+ I ++RE P Q ++ N ++P Q + P A ++++ S
Sbjct: 91 A-LNAVHSFIAEKVREIP--QAMTKPEVVNI--LQP-QTTMNPDRAKQA--KLIVPNSTA 142
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGKGEQ---KHRHIQFGGSAQQV 308
G +IG+ G+ + + +SGA +++ K E + R + G +QV
Sbjct: 143 GLIIGKGGATVKAVMEQSGAWVQL-SQKPEGINLQERVVTVSGEPEQV 189
Score = 74 (31.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE----QKHRHIQFGGSAQQVAL 310
E+ + E+LVG ++G+ G + + +GA I++ KGE ++R + GS
Sbjct: 410 EIAVPENLVGAILGKGGKTLVEYQELTGARIQI-SKKGEFLPGTRNRRVTITGSPAATQA 468
Query: 311 AKQRVDEYI-YSQLIQQAGAQ 330
A+ + + + Y Q ++ + Q
Sbjct: 469 AQYLISQRVTYEQGVRASNPQ 489
>UNIPROTKB|F8VWQ4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021922
ProteinModelPortal:F8VWQ4 SMR:F8VWQ4 PRIDE:F8VWQ4
Ensembl:ENST00000550927 ArrayExpress:F8VWQ4 Bgee:F8VWQ4
Uniprot:F8VWQ4
Length = 308
Score = 113 (44.8 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 35/123 (28%), Positives = 62/123 (50%)
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
V+ N I L+ D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 5 VIEGGLNVTLTIRLLMHGKDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 63
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 64 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 117
Query: 223 RQV 225
+ V
Sbjct: 118 KGV 120
Score = 106 (42.4 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 227 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 286
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 287 ISLAQYLINVRLSSE 301
Score = 74 (31.1 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
A V R++VP+ Q G +IGK G +I++IRE
Sbjct: 35 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 67
>UNIPROTKB|E1BFI4 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171 CTD:10644
GO:GO:0044430 OMA:KQQEQKH EMBL:DAAA02001852 EMBL:DAAA02001853
EMBL:DAAA02001854 EMBL:DAAA02001855 EMBL:DAAA02001856
IPI:IPI00721408 RefSeq:NP_001179433.1 UniGene:Bt.33805
ProteinModelPortal:E1BFI4 Ensembl:ENSBTAT00000036032 GeneID:519028
KEGG:bta:519028 NextBio:20872792 Uniprot:E1BFI4
Length = 599
Score = 154 (59.3 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 55/222 (24%), Positives = 98/222 (44%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G + A+ D RI+VP++ +G +IGKEG I+
Sbjct: 160 VSSPSPPQRAQRGDHSSREQGHAPGGSSQ--ARQIDFPLRILVPTQFVGAIIGKEGLTIK 217
Query: 74 KIREEXXXXXXXXXX--XXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++ E+ V I ++ + + A + I ++ K+ D
Sbjct: 218 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 271
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 272 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 319
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN 233
+R + + G V A NA +EI +LRE +++++ N
Sbjct: 320 NPERTITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQAN 361
Score = 69 (29.3 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 25/99 (25%), Positives = 42/99 (42%)
Query: 221 PPRQVISISPAYNYSAIRPAQ--PFVEPTS-ADYVTFEMLISESLVGGLIGRCGSNISRI 277
PP + Y S P Q PF S + + I VG +IG+ G++I ++
Sbjct: 394 PPYHPFATHSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQL 453
Query: 278 RNESGAMIKVYGGKG-EQKHRHIQFGGSAQQVALAKQRV 315
+GA IK+ +G + R + G + A+ R+
Sbjct: 454 ARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 492
Score = 44 (20.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 243 FVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
F P + + + S G +IG+ G ++ ++N + A + V
Sbjct: 501 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIV 545
>UNIPROTKB|F1PUD6 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:AAEX03000869 EMBL:AAEX03000868 Ensembl:ENSCAFT00000006989
Uniprot:F1PUD6
Length = 502
Score = 146 (56.5 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 56/239 (23%), Positives = 104/239 (43%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE---ERVI 97
P A+ + ++++PS G +IGK G I ++++E + ERV
Sbjct: 34 PCAPAEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVC 93
Query: 98 IIS-SKDNDNVV-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
++ + + N V S +++I + K + N + A +L++ S AG
Sbjct: 94 LVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAG 153
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+IG G ++ + SGA + + +Q P + E RVV +SG+ V A+ I
Sbjct: 154 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQ 208
Query: 216 QLRENPPRQ-VISISPAYNYSAIRPAQPFVEP--TSADYVTFEMLISESLVGGLIGRCG 271
+++E+P ++IS A + + P P + AD + S + GL+G G
Sbjct: 209 KVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAG 267
Score = 117 (46.2 bits), Expect = 0.00048, P = 0.00048
Identities = 45/168 (26%), Positives = 80/168 (47%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++LI AG +IG GQ I +L+ +GATI + ++RV + G
Sbjct: 45 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF----YPGTTERVCLVQGTAE 100
Query: 205 AVLNALVE-IGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A LNA+ I ++RE P Q ++ N ++P Q + P A ++++ S
Sbjct: 101 A-LNAVHSFIAEKVREIP--QAMTKPEVVNI--LQP-QTTMNPDRAKQA--KLIVPNSTA 152
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGKGEQ---KHRHIQFGGSAQQV 308
G +IG+ G+ + + +SGA +++ K E + R + G +QV
Sbjct: 153 GLIIGKGGATVKAVMEQSGAWVQL-SQKPEGINLQERVVTVSGEPEQV 199
Score = 74 (31.1 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE----QKHRHIQFGGSAQQVAL 310
E+ + E+LVG ++G+ G + + +GA I++ KGE ++R + GS
Sbjct: 420 EIAVPENLVGAILGKGGKTLVEYQELTGARIQI-SKKGEFLPGTRNRRVTITGSPAATQA 478
Query: 311 AKQRVDEYI-YSQLIQQAGAQ 330
A+ + + + Y Q ++ + Q
Sbjct: 479 AQYLISQRVTYEQGVRASNPQ 499
>UNIPROTKB|F1NWN2 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 EMBL:AADN02024285
EMBL:AADN02024286 IPI:IPI00599184 Ensembl:ENSGALT00000010541
Uniprot:F1NWN2
Length = 551
Score = 176 (67.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 78/341 (22%), Positives = 137/341 (40%)
Query: 6 EITVNPTVSVVTEPEP-RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKV 64
+++ P V + P P R G RE G G + K D R++VP++ +G +
Sbjct: 124 KVSYIPDEEVSSPPPPQRSRRGGHASREQGSSPGGSSQ--PKQLDFPLRMLVPTQFVGAI 181
Query: 65 IGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVVSDAENALQQIAALIL 123
IGKEG I+ + ++ E+ I I + A + I ++
Sbjct: 182 IGKEGLTIKNLTKQTQSKVDIHRKENAGAAEKPITIHATPEG-----CSEACRMILDIMQ 236
Query: 124 KDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
K+ D A ++ +++L S G LIG G+N++K+ +G I I
Sbjct: 237 KEADETKSAEEIP--------LKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQD 288
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
L + + +R + + G A NA VEI +LRE +++++ P N SA+
Sbjct: 289 LTI----YNPERTITVKGSTEACSNAEVEIMKKLREAYENDIVAVNQQANLIPGLNLSAL 344
Query: 238 ----------------------RPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
P PF + + V + I VG +IG+ G +I
Sbjct: 345 GIFSTGLSMLPSSAGARGAAAAAPYHPFAQLPEQEVVN--LFIPTQAVGAIIGKKGQHIK 402
Query: 276 RIRNESGAMIKVYGGKG-EQKHRHIQFGGSAQQVALAKQRV 315
++ +GA IK+ +G + R + G + A+ R+
Sbjct: 403 QLARFAGASIKIAPAEGPDATERMVIITGPPEAQFKAQGRI 443
>UNIPROTKB|F1MS84 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:DAAA02047389 IPI:IPI00703570 Ensembl:ENSBTAT00000017485
Uniprot:F1MS84
Length = 464
Score = 143 (55.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 54/231 (23%), Positives = 101/231 (43%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE---ERVIIIS-SKDN 104
+ ++++PS G +IGK G I ++++E + ERV ++ + +
Sbjct: 4 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 63
Query: 105 DNVV-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
N V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 64 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 123
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 124 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDPQS 178
Query: 224 Q-VISISPAYNYSAIRPAQPFVEP--TSADYVTFEMLISESLVGGLIGRCG 271
++IS A + + P P + AD + S + GL+G G
Sbjct: 179 SSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAG 229
Score = 117 (46.2 bits), Expect = 0.00043, P = 0.00043
Identities = 45/168 (26%), Positives = 80/168 (47%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++LI AG +IG GQ I +L+ +GATI + ++RV + G
Sbjct: 7 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF----YPGTTERVCLVQGTAE 62
Query: 205 AVLNALVE-IGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A LNA+ I ++RE P Q ++ N ++P Q + P A ++++ S
Sbjct: 63 A-LNAVHSFIAEKVREIP--QAMTKPEVVNI--LQP-QTTMNPDRAKQA--KLIVPNSTA 114
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGKGEQ---KHRHIQFGGSAQQV 308
G +IG+ G+ + + +SGA +++ K E + R + G +QV
Sbjct: 115 GLIIGKGGATVKAVMEQSGAWVQL-SQKPEGINLQERVVTVSGEPEQV 161
Score = 74 (31.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE----QKHRHIQFGGSAQQVAL 310
E+ + E+LVG ++G+ G + + +GA I++ KGE ++R + GS
Sbjct: 382 EIAVPENLVGAILGKGGKTLVEYQELTGARIQI-SKKGEFLPGTRNRRVTITGSPAATQA 440
Query: 311 AKQRVDEYI-YSQLIQQAGAQ 330
A+ + + + Y Q ++ + Q
Sbjct: 441 AQYLISQRVTYEQGVRASNPQ 461
>CGD|CAL0000592 [details] [associations]
symbol:orf19.5627 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IEA]
[GO:0006469 "negative regulation of protein kinase activity"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 CGD:CAL0000592 GO:GO:0003723 EMBL:AACQ01000034
eggNOG:NOG315872 RefSeq:XP_719187.1 ProteinModelPortal:Q5ABS3
GeneID:3639231 KEGG:cal:CaO19.5627 Uniprot:Q5ABS3
Length = 368
Score = 131 (51.2 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 51/174 (29%), Positives = 83/174 (47%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG G I IR E ER++ +S K + D
Sbjct: 72 YRVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISRLIPGSHERILTVSGK-----LDDC 126
Query: 112 ENALQQIA-ALILKDDDS-NSEASKVAAG--HVAANTI-RLLIAGSQAGCLIGMSGQNIE 166
AL A ALI + +S N K + + TI RLLI SQ G LIG G I+
Sbjct: 127 AKALSYFAQALINANIESYNYFPLKQLSSTPNTEETTILRLLIPNSQMGTLIGSKGARIQ 186
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+L+N+ ++ I + + LP ++R+V++ G V + ++L I L E+
Sbjct: 187 QLQNNFNISM-IASKSFLP-----GSNERLVELQGTVDDLYDSLRIISRCLIED 234
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 38/134 (28%), Positives = 64/134 (47%)
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
R+L++ +AGCLIG +GQ I+ +RN + I L +HE R++ +SG +
Sbjct: 73 RVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISR-----LIPGSHE--RILTVSGKLDD 125
Query: 206 VLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGG 265
AL L + + +YNY ++ Q P + + +LI S +G
Sbjct: 126 CAKALSYFAQAL-------INANIESYNYFPLK--QLSSTPNTEETTILRLLIPNSQMGT 176
Query: 266 LIGRCGSNISRIRN 279
LIG G+ I +++N
Sbjct: 177 LIGSKGARIQQLQN 190
Score = 84 (34.6 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRV 315
+VG LIG+ GS I +R SGAMI + + R GS+ V AKQ +
Sbjct: 297 IVGALIGKRGSRIDGVRKVSGAMIAISEAIEGENERVFTITGSSHAVDKAKQMI 350
>UNIPROTKB|I3LQS0 [details] [associations]
symbol:HNRNPK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072369 "regulation of lipid transport by positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0045716 "positive regulation of
low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IEA] [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0000978 GO:GO:0001077 GO:GO:0000790
GO:GO:0048260 GO:GO:0071013 GO:GO:0045716 GO:GO:0010988
GeneTree:ENSGT00550000074311 OMA:KALRTDX GO:GO:0072369
InterPro:IPR012987 Pfam:PF08067 EMBL:FP312814
Ensembl:ENSSSCT00000025854 Uniprot:I3LQS0
Length = 444
Score = 129 (50.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 56/206 (27%), Positives = 89/206 (43%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXX 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R +
Sbjct: 23 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 82
Query: 87 XXXXRHEERVIIISSKDND------NVVSDAENALQQIAALILKDDDSNSEASK-VAAGH 139
ER++ IS+ ++ E LQ + S+A + + H
Sbjct: 83 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 140
Query: 140 VAANT----IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
+ +RLLI S AG +IG+ G I++LR ++ TI + C +DR
Sbjct: 141 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CCP-QSTDR 194
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 195 VVLIGGKPDRVVECIKIILDLISESP 220
Score = 119 (46.9 bits), Expect = 0.00024, P = 0.00024
Identities = 46/169 (27%), Positives = 77/169 (45%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + P+ +S E R++ IS D+
Sbjct: 48 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV--PD-----SSGPE--RILSISADIE 98
Query: 205 AVLNALVEIGNQLREN---PPRQVISISPAYNYSAIRPAQPFVEPTSADY-VTFEMLISE 260
+ L +I L E P S P + A+ + +D+ +LI +
Sbjct: 99 TIGEILKKIIPTLEEGLQLPSPTATSQLPLES-DAVECLN-YQHYKGSDFDCELRLLIHQ 156
Query: 261 SLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQK-HRHIQFGGSAQQV 308
SL GG+IG G+ I +R + IK++ Q R + GG +V
Sbjct: 157 SLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRV 205
Score = 89 (36.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
+T ++ I + L G +IG+ G I +IR+ESGA IK+ + R I G+ Q+ A
Sbjct: 369 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 428
Query: 312 K 312
+
Sbjct: 429 Q 429
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 171 (65.3 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 49/171 (28%), Positives = 88/171 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER++ I+ D +
Sbjct: 19 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNC--PERIVTITGP-TDAIFK--- 72
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A IA ++D NS ++ A T+RL++ SQ G LIG G I+++R S+
Sbjct: 73 -AFAMIAYKF-EEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMREST 129
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 130 GAQVQV-AGDMLP-----NSTERAVTISGTPEAIIQCVKQICVVMLESPPK 174
Score = 106 (42.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 42/153 (27%), Positives = 68/153 (44%)
Query: 169 RNSSGATIVILAPNQL---PLCASAHESDRVVQISGDVPA-VLNALVEIGNQLRENPPRQ 224
R +T VI + Q+ PL ASA ++Q +PA + I + + Q
Sbjct: 181 RPKPASTPVIFSGGQVRADPLAASAANLSLLLQHQ-PLPAYTIQGQYAIPHPDQLTKLHQ 239
Query: 225 V-ISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGA 283
+ + +P PA P ++ S T E+ I L+G +IGR G+ I+ IR SGA
Sbjct: 240 LAMQQTPFTPLGQTTPAFPGLD-ASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGA 298
Query: 284 MIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVD 316
IK+ R I G+ ++LA+ ++
Sbjct: 299 QIKIANAMEGSSERQITITGTPANISLAQYLIN 331
Score = 73 (30.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIIS 100
V R++VP+ Q G +IGK G +I+++RE + ER + IS
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTIS 151
>UNIPROTKB|B4DLC0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HOVERGEN:HBG053520 HGNC:HGNC:8648 ChiTaRS:PCBP2
EMBL:AK296930 IPI:IPI01009186 SMR:B4DLC0 STRING:B4DLC0
Ensembl:ENST00000541275 UCSC:uc010soh.1 Uniprot:B4DLC0
Length = 301
Score = 169 (64.5 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 49/176 (27%), Positives = 93/176 (52%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC--PERIITLAGPTN-------- 66
Query: 113 NALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
>UNIPROTKB|Q3T0D0 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0072369 "regulation of
lipid transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0045716 "positive
regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA] [GO:0010988 "regulation of
low-density lipoprotein particle clearance" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0000978 GO:GO:0001077 GO:GO:0000790 GO:GO:0048260
GO:GO:0071013 GO:GO:0045716 GO:GO:0010988 EMBL:BC102450
IPI:IPI00696554 RefSeq:NP_001029734.1 UniGene:Bt.47688
ProteinModelPortal:Q3T0D0 SMR:Q3T0D0 STRING:Q3T0D0 PRIDE:Q3T0D0
Ensembl:ENSBTAT00000028162 GeneID:528135 KEGG:bta:528135 CTD:3190
eggNOG:NOG285495 GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764
HOVERGEN:HBG051916 InParanoid:Q3T0D0 KO:K12886 OMA:KALRTDX
OrthoDB:EOG49KFRD NextBio:20874747 GO:GO:0072369 InterPro:IPR012987
Pfam:PF08067 Uniprot:Q3T0D0
Length = 464
Score = 129 (50.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 56/206 (27%), Positives = 89/206 (43%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXX 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 XXXXRHEERVIIISSKDND------NVVSDAENALQQIAALILKDDDSNSEASK-VAAGH 139
ER++ IS+ ++ E LQ + S+A + + H
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 140 VAANT----IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
+ +RLLI S AG +IG+ G I++LR ++ TI + C +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CCP-QSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 119 (46.9 bits), Expect = 0.00026, P = 0.00026
Identities = 46/169 (27%), Positives = 77/169 (45%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + P+ +S E R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV--PD-----SSGPE--RILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISPAYNYSAIRPAQPFVEPTSADY-VTFEMLISE 260
+ L +I L E P S P + A+ + +D+ +LI +
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLES-DAVECLN-YQHYKGSDFDCELRLLIHQ 153
Query: 261 SLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQK-HRHIQFGGSAQQV 308
SL GG+IG G+ I +R + IK++ Q R + GG +V
Sbjct: 154 SLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRV 202
Score = 89 (36.4 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
+T ++ I + L G +IG+ G I +IR+ESGA IK+ + R I G+ Q+ A
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 312 K 312
+
Sbjct: 448 Q 448
>UNIPROTKB|F1RM28 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:FP102597 Ensembl:ENSSSCT00000003434 Uniprot:F1RM28
Length = 554
Score = 143 (55.4 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 54/231 (23%), Positives = 101/231 (43%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE---ERVIIIS-SKDN 104
+ ++++PS G +IGK G I ++++E + ERV ++ + +
Sbjct: 94 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 153
Query: 105 DNVV-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
N V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 154 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 213
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 214 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDPQS 268
Query: 224 Q-VISISPAYNYSAIRPAQPFVEP--TSADYVTFEMLISESLVGGLIGRCG 271
++IS A + + P P + AD + S + GL+G G
Sbjct: 269 SSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAG 319
Score = 117 (46.2 bits), Expect = 0.00056, P = 0.00056
Identities = 45/168 (26%), Positives = 80/168 (47%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++LI AG +IG GQ I +L+ +GATI + ++RV + G
Sbjct: 97 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF----YPGTTERVCLVQGTAE 152
Query: 205 AVLNALVE-IGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A LNA+ I ++RE P Q ++ N ++P Q + P A ++++ S
Sbjct: 153 A-LNAVHSFIAEKVREIP--QAMTKPEVVNI--LQP-QTTMNPDRAKQA--KLIVPNSTA 204
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGKGEQ---KHRHIQFGGSAQQV 308
G +IG+ G+ + + +SGA +++ K E + R + G +QV
Sbjct: 205 GLIIGKGGATVKAVMEQSGAWVQL-SQKPEGINLQERVVTVSGEPEQV 251
Score = 74 (31.1 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE----QKHRHIQFGGSAQQVAL 310
E+ + E+LVG ++G+ G + + +GA I++ KGE ++R + GS
Sbjct: 472 EIAVPENLVGAILGKGGKTLVEYQELTGARIQI-SKKGEFLPGTRNRRVTITGSPAATQA 530
Query: 311 AKQRVDEYI-YSQLIQQAGAQ 330
A+ + + + Y Q ++ + Q
Sbjct: 531 AQYLISQRVTYEQGVRASNPQ 551
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 149 (57.5 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 45/155 (29%), Positives = 82/155 (52%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC--PERIITLAGPTN-------- 66
Query: 113 NALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++R
Sbjct: 67 -AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
S+GA + + A + LP + ++R + I+G +P
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAITIAG-IP 152
Score = 107 (42.7 bits), Expect = 0.00021, P = 0.00021
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
>RGD|1308032 [details] [associations]
symbol:Nova2 "neuro-oncological ventral antigen 2" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1308032 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00650000093048 IPI:IPI00958388
Ensembl:ENSRNOT00000057965 Uniprot:F1M4H5
Length = 516
Score = 139 (54.0 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 53/231 (22%), Positives = 100/231 (43%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE---ERVIIIS-SKDN 104
+ ++++PS G +IGK G I ++++E + ERV ++ + +
Sbjct: 56 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 115
Query: 105 DNVV-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
N S +++I + K + N + A +L++ S AG +IG G
Sbjct: 116 LNAAHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 175
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 176 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDPQS 230
Query: 224 Q-VISISPAYNYSAIRPAQPFVEP--TSADYVTFEMLISESLVGGLIGRCG 271
++IS A + + P P + AD + S + GL+G G
Sbjct: 231 SSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAG 281
Score = 115 (45.5 bits), Expect = 0.00084, P = 0.00084
Identities = 43/167 (25%), Positives = 78/167 (46%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++LI AG +IG GQ I +L+ +GATI + ++RV + G
Sbjct: 59 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF----YPGTTERVCLVQGTAE 114
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
A+ A I ++RE P Q ++ N ++P Q + P A ++++ S G
Sbjct: 115 ALNAAHSFIAEKVREIP--QAMTKPEVVNI--LQP-QTTMNPDRAKQA--KLIVPNSTAG 167
Query: 265 GLIGRCGSNISRIRNESGAMIKVYGGKGEQ---KHRHIQFGGSAQQV 308
+IG+ G+ + + +SGA +++ K E + R + G +QV
Sbjct: 168 LIIGKGGATVKAVMEQSGAWVQL-SQKPEGINLQERVVTVSGEPEQV 213
Score = 74 (31.1 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE----QKHRHIQFGGSAQQVAL 310
E+ + E+LVG ++G+ G + + +GA I++ KGE ++R + GS
Sbjct: 434 EIAVPENLVGAILGKGGKTLVEYQELTGARIQI-SKKGEFLPGTRNRRVTITGSPAATQA 492
Query: 311 AKQRVDEYI-YSQLIQQAGAQ 330
A+ + + + Y Q ++ + Q
Sbjct: 493 AQYLISQRVTYEQGVRASNPQ 513
>ZFIN|ZDB-GENE-040426-1926 [details] [associations]
symbol:hnrnpk "heterogeneous nuclear
ribonucleoprotein K" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-040426-1926 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 InterPro:IPR012987 Pfam:PF08067
EMBL:CR376792 EMBL:CU682767 IPI:IPI00865147 RefSeq:NP_998159.2
UniGene:Dr.106469 UniGene:Dr.122250 Ensembl:ENSDART00000097919
GeneID:406267 KEGG:dre:406267 NextBio:20817900 ArrayExpress:F1QWB4
Bgee:F1QWB4 Uniprot:F1QWB4
Length = 429
Score = 122 (48.0 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 55/193 (28%), Positives = 90/193 (46%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXX 83
+GKR +D E E P +R++ D V RI++ S+ G VIGK G I+ +R +
Sbjct: 19 NGKRSADDSEEE--KPYKRSRNSDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNATV 76
Query: 84 XXXXXXXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
ER++ +S+ ++ + AE L+ I L E + G
Sbjct: 77 SVPDSSG--PERILSVSA----DIPTVAEILLKIIPTL---------EEYQHHKGVDFDC 121
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL---APNQLP-LCASAHESDRVVQI 199
+RLLI S AG +IG+ G I++LR+S+ TI + P + +++RVVQ
Sbjct: 122 ELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQECCPQSTDRVVLVGGKAERVVQC 181
Query: 200 SGDVPAVLNALVE 212
+ +L +VE
Sbjct: 182 ---IKTMLELIVE 191
Score = 96 (38.9 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 30/95 (31%), Positives = 47/95 (49%)
Query: 126 DDSNSEAS-KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL 184
DDS E K + +R+L+ AG +IG G+NI+ LR AT+ + P+
Sbjct: 25 DDSEEEKPYKRSRNSDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNATVSV--PD-- 80
Query: 185 PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S E R++ +S D+P V L++I L E
Sbjct: 81 ---SSGPE--RILSVSADIPTVAEILLKIIPTLEE 110
Score = 89 (36.4 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
+T ++ I + L G +IG+ G I +IR+ESGA IK+ + R I G+ Q+ A
Sbjct: 354 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGSEDRIITITGTQDQIQNA 413
Query: 312 K 312
+
Sbjct: 414 Q 414
>UNIPROTKB|E2RJ54 [details] [associations]
symbol:E2RJ54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 OMA:INPWANG EMBL:AAEX03026697
Ensembl:ENSCAFT00000027729 NextBio:20855871 Uniprot:E2RJ54
Length = 439
Score = 120 (47.3 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 56/195 (28%), Positives = 84/195 (43%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXX 86
GK ED E E + + R + V RI++ S+ G VIGK G I+ + +
Sbjct: 20 GKCPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALHTDYNASVSVP 79
Query: 87 XXXXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
ER++ IS+ D E + ILK E + G +R
Sbjct: 80 DSSG--PERILSISA--------DIETIGE-----ILKKIIPTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CCP-HPTDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENP 221
+ + I + + E+P
Sbjct: 179 VECIKIILDLISESP 193
Score = 91 (37.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
+T ++ IS+ L G +IG+ G I ++R+ESGA IK+ + R I G+ Q+
Sbjct: 364 ITTQVTISKDLAGSIIGKGGRRIKQVRHESGASIKIDEPLEGSEDRVITITGTQDQI 420
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 154 (59.3 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 48/171 (28%), Positives = 83/171 (48%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER++ I+ V+
Sbjct: 20 RLLMHGKEVGSIIGKKGETVKKMREESGARINISDGSS--PERIVTITGASE--VIF--- 72
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A IA +D ++ S V + T+RL+ SQ G LIG G I+++R S+
Sbjct: 73 KAFAMIAEKFEEDILASMINSTVTSRPPV--TLRLVFPASQCGSLIGKGGSKIKEIREST 130
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA + + A + LP ++R V ISG A+ + I + E+PP+
Sbjct: 131 GAQVQV-AGDLLP-----DSTERAVTISGTPHAITQCVKHICTVMLESPPK 175
Score = 97 (39.2 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 27/93 (29%), Positives = 43/93 (46%)
Query: 129 NSEASKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
N V+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I
Sbjct: 2 NEREGGVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI--------- 52
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+ +R+V I+G + A I + E+
Sbjct: 53 SDGSSPERIVTITGASEVIFKAFAMIAEKFEED 85
Score = 80 (33.2 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 247 TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
TS VT ++ S G LIG+ GS I IR +GA ++V G
Sbjct: 96 TSRPPVTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 138
>UNIPROTKB|Q9Y6M1 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005856 "cytoskeleton"
evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISS]
[GO:0045182 "translation regulator activity" evidence=ISS]
[GO:0042035 "regulation of cytokine biosynthetic process"
evidence=IC] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 HOVERGEN:HBG052725
eggNOG:NOG249985 HOGENOM:HOG000000675 EMBL:AF057352 EMBL:EU408701
EMBL:EU408702 EMBL:EU408703 EMBL:AC016961 EMBL:AC108670
EMBL:BC021290 IPI:IPI00179713 IPI:IPI00180983 IPI:IPI00743914
IPI:IPI00922068 IPI:IPI00953576 RefSeq:NP_001007226.1
RefSeq:NP_006539.3 UniGene:Hs.35354 PDB:2CQH PDBsum:2CQH
ProteinModelPortal:Q9Y6M1 SMR:Q9Y6M1 IntAct:Q9Y6M1 STRING:Q9Y6M1
PhosphoSite:Q9Y6M1 DMDM:224471831 PaxDb:Q9Y6M1 PRIDE:Q9Y6M1
DNASU:10644 Ensembl:ENST00000346192 Ensembl:ENST00000382199
Ensembl:ENST00000421047 GeneID:10644 KEGG:hsa:10644 UCSC:uc003fpo.3
UCSC:uc003fpp.3 UCSC:uc010hyi.3 UCSC:uc010hyj.3 UCSC:uc010hyl.3
CTD:10644 GeneCards:GC03M185361 HGNC:HGNC:28867 HPA:CAB017126
MIM:608289 neXtProt:NX_Q9Y6M1 PharmGKB:PA128394577
OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2 EvolutionaryTrace:Q9Y6M1
GenomeRNAi:10644 NextBio:40455 ArrayExpress:Q9Y6M1 Bgee:Q9Y6M1
CleanEx:HS_IGF2BP2 Genevestigator:Q9Y6M1 GermOnline:ENSG00000073792
GO:GO:0044430 Uniprot:Q9Y6M1
Length = 599
Score = 148 (57.2 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 54/222 (24%), Positives = 98/222 (44%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G + A+ D RI+VP++ +G +IGKEG I+
Sbjct: 160 VSSPSPPQRAQRGDHSSREQGHAPGGTSQ--ARQIDFPLRILVPTQFVGAIIGKEGLTIK 217
Query: 74 KIREEXXXXXXXXXX--XXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++ E+ V I ++ + + A + I ++ K+ D
Sbjct: 218 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 271
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 272 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 319
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN 233
+R + + G V A +A +EI +LRE +++++ N
Sbjct: 320 NPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNQQAN 361
Score = 62 (26.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG-EQKHRHIQFGGSAQQVALAKQR 314
+ I VG +IG+ G++I ++ +GA IK+ +G + R + G + A+ R
Sbjct: 432 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGR 491
Query: 315 V 315
+
Sbjct: 492 I 492
Score = 44 (20.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 243 FVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
F P + + + S G +IG+ G ++ ++N + A + V
Sbjct: 501 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIV 545
>UNIPROTKB|F8W930 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC016961 EMBL:AC108670
IPI:IPI00953576 HGNC:HGNC:28867 ChiTaRS:IGF2BP2 OMA:KQQEQKH
ProteinModelPortal:F8W930 SMR:F8W930 PRIDE:F8W930
Ensembl:ENST00000457616 UCSC:uc003fpq.3 ArrayExpress:F8W930
Bgee:F8W930 Uniprot:F8W930
Length = 605
Score = 148 (57.2 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 54/222 (24%), Positives = 98/222 (44%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G + A+ D RI+VP++ +G +IGKEG I+
Sbjct: 166 VSSPSPPQRAQRGDHSSREQGHAPGGTSQ--ARQIDFPLRILVPTQFVGAIIGKEGLTIK 223
Query: 74 KIREEXXXXXXXXXX--XXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++ E+ V I ++ + + A + I ++ K+ D
Sbjct: 224 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 277
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 278 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 325
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN 233
+R + + G V A +A +EI +LRE +++++ N
Sbjct: 326 NPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNQQAN 367
Score = 62 (26.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG-EQKHRHIQFGGSAQQVALAKQR 314
+ I VG +IG+ G++I ++ +GA IK+ +G + R + G + A+ R
Sbjct: 438 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGR 497
Query: 315 V 315
+
Sbjct: 498 I 498
Score = 44 (20.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 243 FVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
F P + + + S G +IG+ G ++ ++N + A + V
Sbjct: 507 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIV 551
>UNIPROTKB|G4N5A5 [details] [associations]
symbol:MGG_16887 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CM001233 GO:GO:0003723
RefSeq:XP_003712769.1 ProteinModelPortal:G4N5A5
EnsemblFungi:MGG_16887T0 GeneID:12985187 KEGG:mgr:MGG_16887
Uniprot:G4N5A5
Length = 370
Score = 128 (50.1 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 47/181 (25%), Positives = 79/181 (43%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRH 92
DGE + A+AQ + R IV S++ G +IGK G + +R+E
Sbjct: 30 DGEPAPKTDEEYAQAQ-LTVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGV 88
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
+RV+ I+ A +A +L+ S V+ + I+LLI+ +
Sbjct: 89 HDRVLTITGG-----CEGISKAYAVVARALLEGAPSMGMGGVVSNN--GTHPIKLLISHN 141
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
Q G +IG G I+ +++ SG +V LP ++RVV++ G + A+ E
Sbjct: 142 QMGTIIGRQGLKIKHIQDVSGVRMVA-QKEMLP-----QSTERVVEVQGTPEGIQRAVWE 195
Query: 213 I 213
I
Sbjct: 196 I 196
Score = 87 (35.7 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 33/124 (26%), Positives = 54/124 (43%)
Query: 107 VVSDA-ENALQQ-IAALILKDDD-----SNSEASKVAAGHVAAN-TIRLLIAGSQAGCLI 158
V ++A N L + I L + DD+ A K + A T+R +++ +AG +I
Sbjct: 2 VATEAMTNELAEGIDGLKVNDDEPRLGPDGEPAPKTDEEYAQAQLTVRAIVSSKEAGVII 61
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G+N+ LR+ +G + Q H DRV+ I+G + A + L
Sbjct: 62 GKGGKNVADLRDETGVKAGVSKVVQ-----GVH--DRVLTITGGCEGISKAYAVVARALL 114
Query: 219 ENPP 222
E P
Sbjct: 115 EGAP 118
Score = 77 (32.2 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQK-HRHIQ 300
P + + T + I +VG +IGR GS IS IR SGA I + ++ R
Sbjct: 278 PTHDENGEEIQTQNISIPADMVGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFT 337
Query: 301 FGGSAQ 306
GSA+
Sbjct: 338 IMGSAK 343
>UNIPROTKB|D3DS81 [details] [associations]
symbol:NOVA1 "Neuro-oncological ventral antigen 1, isoform
CRA_a" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:CH471078
RefSeq:NP_006480.2 UniGene:Hs.31588 GeneID:4857 KEGG:hsa:4857
CTD:4857 HGNC:HGNC:7886 HOGENOM:HOG000007833 KO:K14944
ChiTaRS:NOVA1 GenomeRNAi:4857 NextBio:18710 EMBL:AL079343
EMBL:AL132716 IPI:IPI00956017 SMR:D3DS81 Ensembl:ENST00000465357
UCSC:uc001wpz.3 Uniprot:D3DS81
Length = 483
Score = 132 (51.5 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 56/251 (22%), Positives = 109/251 (43%)
Query: 28 KRRREDGEIEGSDPKRRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXX 85
++R + E KR +D ++++PS G +IGK G I ++++E
Sbjct: 26 RKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKL 85
Query: 86 XXXXXRHE---ERVIIISSK-DNDNVVSD--AENALQQIAALILKDDDSNSEASKVAAGH 139
+ ERV +I + N V AE ++++ + K + + +
Sbjct: 86 SKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEK-IREMPQNVAKTEPVSILQPQTTVNP 144
Query: 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
+++++ S AG +IG G ++ + SGA + + +Q P + E RVV +
Sbjct: 145 DRIKQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPDGINLQE--RVVTV 199
Query: 200 SGDVPAVLNALVEIGNQLRENPPR-QVISISPAYNYSAIRPAQPFVEPTSADYV-TFEML 257
SG+ A+ I +++E+P ++IS Y+ + PT + Y T E+L
Sbjct: 200 SGEPEQNRKAVELIIQKIQEDPQSGSCLNIS----YANVTGPVANSNPTGSPYANTAEVL 255
Query: 258 ISESLVGGLIG 268
+ + GL+G
Sbjct: 256 PTAAAAAGLLG 266
Score = 128 (50.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 43/144 (29%), Positives = 72/144 (50%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++LI AG +IG GQ I +L+ +GATI + ++RV I G V
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF----YPGTTERVCLIQGTVE 107
Query: 205 AVLNALVE-IGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A LNA+ I ++RE P + V P S ++P Q V P V ++++ S
Sbjct: 108 A-LNAVHGFIAEKIREMP-QNVAKTEPV---SILQP-QTTVNPDRIKQV--KIIVPNSTA 159
Query: 264 GGLIGRCGSNISRIRNESGAMIKV 287
G +IG+ G+ + + +SGA +++
Sbjct: 160 GLIIGKGGATVKAVMEQSGAWVQL 183
Score = 74 (31.1 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE----QKHRHIQFGG 303
S D V E+ + E+LVG ++G+ G + + +GA I++ KGE ++R + G
Sbjct: 396 SKDVV--EIAVPENLVGAILGKGGKTLVEYQELTGARIQI-SKKGEFVPGTRNRKVTITG 452
Query: 304 SAQQVALAKQRVDEYI-YSQLIQQAGAQ 330
+ A+ + + I Y Q ++ A Q
Sbjct: 453 TPAATQAAQYLITQRITYEQGVRAANPQ 480
>ZFIN|ZDB-GENE-060503-536 [details] [associations]
symbol:igf2bp2b "insulin-like growth factor 2 mRNA
binding protein 2b" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-060503-536
GO:GO:0003723 EMBL:CR382370 GeneTree:ENSGT00530000063171
EMBL:BX004885 IPI:IPI00919570 PRIDE:F1QN87
Ensembl:ENSDART00000088166 Bgee:F1QN87 Uniprot:F1QN87
Length = 446
Score = 160 (61.4 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 57/216 (26%), Positives = 96/216 (44%)
Query: 25 VSGKRRREDGE--IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXX 82
V+G R +E G+ G R + Q++ RI+VP++ +G +IGKEG I+ I ++
Sbjct: 33 VTGSREQEFGQPGAMGGPQGPRQRQQELPLRILVPTQFVGAIIGKEGLTIKNITKQTQSK 92
Query: 83 XXXXXX--XXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHV 140
E+ + I SSK+ Q +IL+ + + +K+ V
Sbjct: 93 VDIHRKENAGATEKAITIHSSKEG----------CSQACRMILEIMEKEANDTKI----V 138
Query: 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200
+++L S G LIG G+N++K+ +G I I A L + + +R + +
Sbjct: 139 EEVPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISALQDL----TVYNQERTISVR 194
Query: 201 GDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSA 236
G V A EI +LRE V S++ N A
Sbjct: 195 GGVEECCKAEGEIMKKLREAHENDVASVNQQTNMMA 230
Score = 40 (19.1 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 247 TSADYVTFE--MLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
T+ + V E + + + G +IG+ G ++ ++N + A + V
Sbjct: 348 TAKEEVKLEAHIKVPSTAAGRVIGKGGKTVNELQNLTSAEVIV 390
>UNIPROTKB|F1NPL3 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00591502 Ensembl:ENSGALT00000021483 OMA:DLNMNLS
ArrayExpress:F1NPL3 Uniprot:F1NPL3
Length = 356
Score = 159 (61.0 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 44/162 (27%), Positives = 83/162 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER++ I+ +DA
Sbjct: 16 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSC--PERIVTITGP------TDA- 66
Query: 113 NALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+ + + LK ++D N+ + T+RL++ SQ G LIG G I+++R S
Sbjct: 67 -IFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRES 125
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
+GA + + A + LP + ++R V ISG A++ + +I
Sbjct: 126 TGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQI 161
Score = 115 (45.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 40/153 (26%), Positives = 67/153 (43%)
Query: 175 TIVILAPNQ--LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAY 232
TI+ A N L LC + I G L ++ ++PP + +
Sbjct: 201 TILASAGNHTVLDLCLPCASRFQAFTIQGQYAIPHPDLTKLHQLAMQHPPFTPLGQTTP- 259
Query: 233 NYSAIRPAQPFV--EPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG 290
+ A P+ P + + TS + E+ I L+G +IGR GS I+ IR SGA IK+
Sbjct: 260 GFPAHFPSVPHIGLDATSPTS-SHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANA 318
Query: 291 KGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
R + GS ++LA+ ++ + S++
Sbjct: 319 TEGSAERQVTITGSPANISLAQYLINARLSSEV 351
Score = 105 (42.0 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 30/89 (33%), Positives = 46/89 (51%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + P
Sbjct: 2 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGSCP------ 54
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 55 --ERIVTITGPTDAIFKAFSMIALKFEED 81
Score = 83 (34.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 247 TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
TS VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 92 TSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 134
Score = 81 (33.6 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 27/118 (22%), Positives = 52/118 (44%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE + ER + IS D ++
Sbjct: 97 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 155
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ--AGCLIGMSGQN 164
++QI ++L+ + + + ++ AG Q A ++ +G +
Sbjct: 156 Q----CVKQICVVMLEVSEHSPPKGATIPYRPKPASAPIIFAGGQVRADTILASAGNH 209
>UNIPROTKB|H9L0I0 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 EMBL:AADN02078253 EMBL:AADN02078254 EMBL:AADN02078255
Ensembl:ENSGALT00000023210 Uniprot:H9L0I0
Length = 426
Score = 114 (45.2 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 53/202 (26%), Positives = 93/202 (46%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXX 83
+ +GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R +
Sbjct: 14 ETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 XXXXXXXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
ER++ IS+ D + + E L++I + ++ + + S
Sbjct: 74 SVPDSSG--PERILSISA-DTETI---GE-ILKKIIPTL--EEYQHYKGSDFDC------ 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL---APNQLP-LCASAHESDRVVQI 199
+RLLI S AG +IG+ G I++LR ++ TI + P+ + + DRVV+
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVEC 178
Query: 200 SGDVPAVLNALVEIGNQLRENP 221
+ +L+ + E + R P
Sbjct: 179 ---IKIILDLIFESPIKGRAQP 197
Score = 90 (36.7 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 222 PRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNES 281
P ++ Y+YS + + +T ++ I + L G +IG+ G I +IR+ES
Sbjct: 323 PPELFEGGSGYDYSYAGGRGSYGD-LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHES 381
Query: 282 GAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
GA IK+ + R I G+ Q+ A+
Sbjct: 382 GASIKIDEPLEGSEDRIITITGTQDQIQNAQ 412
>UNIPROTKB|H9L242 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 OMA:INPWANG EMBL:AADN02078253 EMBL:AADN02078254
EMBL:AADN02078255 Ensembl:ENSGALT00000035757 Uniprot:H9L242
Length = 427
Score = 114 (45.2 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 53/202 (26%), Positives = 93/202 (46%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXX 83
+ +GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R +
Sbjct: 14 ETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 XXXXXXXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
ER++ IS+ D + + E L++I + ++ + + S
Sbjct: 74 SVPDSSG--PERILSISA-DTETI---GE-ILKKIIPTL--EEYQHYKGSDFDC------ 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL---APNQLP-LCASAHESDRVVQI 199
+RLLI S AG +IG+ G I++LR ++ TI + P+ + + DRVV+
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVEC 178
Query: 200 SGDVPAVLNALVEIGNQLRENP 221
+ +L+ + E + R P
Sbjct: 179 ---IKIILDLIFESPIKGRAQP 197
Score = 90 (36.7 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 222 PRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNES 281
P ++ Y+YS + + +T ++ I + L G +IG+ G I +IR+ES
Sbjct: 323 PPELFEGGSGYDYSYAGGRGSYGD-LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHES 381
Query: 282 GAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
GA IK+ + R I G+ Q+ A+
Sbjct: 382 GASIKIDEPLEGSEDRIITITGTQDQIQNAQ 412
>ZFIN|ZDB-GENE-040426-1923 [details] [associations]
symbol:hnrpkl "heterogeneous nuclear
ribonucleoprotein K, like" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1923 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG051916 InterPro:IPR012987 Pfam:PF08067 EMBL:BC096867
IPI:IPI00493887 UniGene:Dr.47275 ProteinModelPortal:Q4V9J6
SMR:Q4V9J6 STRING:Q4V9J6 InParanoid:Q4V9J6 NextBio:20817897
ArrayExpress:Q4V9J6 Uniprot:Q4V9J6
Length = 431
Score = 115 (45.5 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 45/153 (29%), Positives = 72/153 (47%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXX 83
D +GKR ED + E + + R + V R+++ S+ G VIGK G I+ +R +
Sbjct: 18 DTNGKRPAEDMDEEQAFKRSRNTDEMVELRVLLRSKNAGAVIGKGGKNIKALRTDYNASV 77
Query: 84 XXXXXXXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
ER++ +S+ D D + E L+ I L E + +G
Sbjct: 78 SVPDSSG--PERILSVSA-DIDTI---GEILLKIIPTL---------EEYQHYSGTDFDC 122
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
+RLLI S AG +IG+ G I++LR ++ TI
Sbjct: 123 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 155
Score = 89 (36.4 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
+T ++ I + L G +IG+ G I +IR+ESGA IK+ + R I G+ Q+ A
Sbjct: 356 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 415
Query: 312 K 312
+
Sbjct: 416 Q 416
Score = 88 (36.0 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI S AG +IG+ G I++LR ++ TI + C H +DRVV + G
Sbjct: 124 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CCP-HSTDRVVLVGGKPE 177
Query: 205 AVLNALVEIGNQLRENP 221
V+ + I + E P
Sbjct: 178 RVVECIKVILELIAEAP 194
Score = 80 (33.2 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 30/121 (24%), Positives = 56/121 (46%)
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
I +D D S+ + ++ A +D +A K + +R+L+ AG +I
Sbjct: 5 IEQQDEDTTFSNTDTNGKRPA-----EDMDEEQAFKRSRNTDEMVELRVLLRSKNAGAVI 59
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G+NI+ LR A++ + P+ +S E R++ +S D+ + L++I L
Sbjct: 60 GKGGKNIKALRTDYNASVSV--PD-----SSGPE--RILSVSADIDTIGEILLKIIPTLE 110
Query: 219 E 219
E
Sbjct: 111 E 111
>UNIPROTKB|Q5ZIQ3 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:NOG285495
HOGENOM:HOG000019764 HOVERGEN:HBG051916 KO:K12886 OrthoDB:EOG49KFRD
InterPro:IPR012987 Pfam:PF08067 EMBL:AJ720731 IPI:IPI00593692
RefSeq:NP_001026556.1 UniGene:Gga.28787 HSSP:P61978
ProteinModelPortal:Q5ZIQ3 SMR:Q5ZIQ3 STRING:Q5ZIQ3 PRIDE:Q5ZIQ3
GeneID:426516 KEGG:gga:426516 CTD:380255 InParanoid:Q5ZIQ3
NextBio:20828064 Uniprot:Q5ZIQ3
Length = 427
Score = 113 (44.8 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 44/153 (28%), Positives = 74/153 (48%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXX 83
+ +GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R +
Sbjct: 14 ETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 XXXXXXXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
ER++ IS+ D + + E L++I + ++ + + S
Sbjct: 74 SVPDSSG--PERILSISA-DTETI---GE-ILKKIIPTL--EEYQHYKGSDFDC------ 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
+RLLI S AG +IG+ G I++LR ++ TI
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 151
Score = 92 (37.4 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G
Sbjct: 120 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CCP-HSTDRVVLIGGKPD 173
Query: 205 AVLNALVEIGNQLRENP 221
V+ + I + + E+P
Sbjct: 174 RVVECIKIILDLISESP 190
Score = 90 (36.7 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 222 PRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNES 281
P ++ Y+YS + + +T ++ I + L G +IG+ G I +IR+ES
Sbjct: 323 PPELFEGGSGYDYSYAGGRGSYGD-LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHES 381
Query: 282 GAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
GA IK+ + R I G+ Q+ A+
Sbjct: 382 GASIKIDEPLEGSEDRIITITGTQDQIQNAQ 412
Score = 73 (30.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + P+ +S E R++ IS D
Sbjct: 42 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV--PD-----SSGPE--RILSISADTE 92
Query: 205 AVLNALVEIGNQLRE 219
+ L +I L E
Sbjct: 93 TIGEILKKIIPTLEE 107
>UNIPROTKB|C9JZY3 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00984041 ProteinModelPortal:C9JZY3 SMR:C9JZY3
STRING:C9JZY3 Ensembl:ENST00000468324 ArrayExpress:C9JZY3
Bgee:C9JZY3 Uniprot:C9JZY3
Length = 168
Score = 137 (53.3 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 44/163 (26%), Positives = 85/163 (52%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +++IRE+ ER+ I+ +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSC--PERITTITGS-----TAAVF 73
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEKLRN 170
+A+ IA + D+D A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 74 HAVSMIAFKL--DEDLC--AAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
++GA + + A + LP + ++R V +SG A++ + +I
Sbjct: 130 TTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQI 166
>UNIPROTKB|F1LMZ7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00331877
Ensembl:ENSRNOT00000044527 ArrayExpress:F1LMZ7 Uniprot:F1LMZ7
Length = 474
Score = 133 (51.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 56/251 (22%), Positives = 109/251 (43%)
Query: 28 KRRREDGEIEGSDPKRRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXX 85
++R + E KR +D ++++PS G +IGK G I ++++E
Sbjct: 25 RKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKL 84
Query: 86 XXXXXRHE---ERVIIISSK-DNDNVVSD--AENALQQIAALILKDDDSNSEASKVAAGH 139
+ ERV +I + N V AE ++++ + K + + +
Sbjct: 85 SKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEK-IREMPQNVAKTEPVSILQPQTTVNP 143
Query: 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
+++++ S AG +IG G ++ + SGA + + +Q P + E RVV +
Sbjct: 144 DRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQE--RVVTV 198
Query: 200 SGDVPAVLNALVEIGNQLRENPPR-QVISISPAYNYSAIRPAQPFVEPTSADYV-TFEML 257
SG+ A+ I +++E+P ++IS Y+ + PT + Y T E+L
Sbjct: 199 SGEPEQNRKAVELIIQKIQEDPQSGSCLNIS----YANVTGPVANSNPTGSPYANTAEVL 254
Query: 258 ISESLVGGLIG 268
+ + GL+G
Sbjct: 255 PTAAAAAGLLG 265
Score = 128 (50.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 43/144 (29%), Positives = 72/144 (50%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++LI AG +IG GQ I +L+ +GATI + ++RV I G +
Sbjct: 51 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF----YPGTTERVCLIQGTIE 106
Query: 205 AVLNALVE-IGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A LNA+ I ++RE P + V P S ++P Q V P V ++++ S
Sbjct: 107 A-LNAVHGFIAEKIREMP-QNVAKTEPV---SILQP-QTTVNPDRIKQV--KIIVPNSTA 158
Query: 264 GGLIGRCGSNISRIRNESGAMIKV 287
G +IG+ G+ + I +SGA +++
Sbjct: 159 GLIIGKGGATVKAIMEQSGAWVQL 182
Score = 67 (28.6 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE----QKHRHIQFGG 303
S D V E+ + E+LVG ++G+ G + + +GA I++ KGE ++R + G
Sbjct: 395 SKDVV--EIAVPENLVGAILGKGGKTLVEYQELTGARIQI-SKKGEFVPGTRNRKVTITG 451
Query: 304 SAQQVALAKQRVDEYI-YSQ 322
+ A+ + + I Y Q
Sbjct: 452 TPAATQAAQYLITQRITYEQ 471
>UNIPROTKB|E1C453 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0010988 "regulation
of low-density lipoprotein particle clearance" evidence=IEA]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IEA] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 KO:K12886 OMA:KALRTDX
InterPro:IPR012987 Pfam:PF08067 EMBL:AADN02064910 EMBL:AADN02064911
IPI:IPI00684854 RefSeq:XP_003643054.1 Ensembl:ENSGALT00000020563
GeneID:427458 KEGG:gga:427458 Uniprot:E1C453
Length = 426
Score = 111 (44.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 46/153 (30%), Positives = 69/153 (45%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXX 83
+ +GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R +
Sbjct: 14 ETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 XXXXXXXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
ER++ IS+ D E + ILK E + G
Sbjct: 74 SVPDSSG--PERILSISA--------DIETIGE-----ILKKIIPTLEEYQHYKGSDFDC 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
+RLLI S AG +IG+ G I++LR ++ TI
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 151
Score = 92 (37.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G
Sbjct: 120 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CCP-HSTDRVVLIGGKPD 173
Query: 205 AVLNALVEIGNQLRENP 221
V+ + I + + E+P
Sbjct: 174 RVVECIKIILDLISESP 190
Score = 90 (36.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 222 PRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNES 281
P ++ Y+YS + + +T ++ I + L G +IG+ G I +IR+ES
Sbjct: 322 PPELFEGGSGYDYSYAGGRGSYGD-LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHES 380
Query: 282 GAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
GA IK+ + R I G+ Q+ A+
Sbjct: 381 GASIKIDEPLEGSEDRIITITGTQDQIQNAQ 411
Score = 76 (31.8 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + P+ +S E R++ IS D+
Sbjct: 42 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV--PD-----SSGPE--RILSISADIE 92
Query: 205 AVLNALVEIGNQLRE 219
+ L +I L E
Sbjct: 93 TIGEILKKIIPTLEE 107
>POMBASE|SPCC757.09c [details] [associations]
symbol:rnc1 "RNA-binding protein that suppresses
calcineurin deletion Rnc1" species:4896 "Schizosaccharomyces pombe"
[GO:0003729 "mRNA binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IGI]
[GO:0048255 "mRNA stabilization" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
PomBase:SPCC757.09c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003729 GO:GO:0048255 GO:GO:0043409
HSSP:Q91WJ8 OrthoDB:EOG4Z65XM eggNOG:NOG315872 PIR:T41600
RefSeq:NP_587684.1 ProteinModelPortal:O74919 STRING:O74919
PRIDE:O74919 EnsemblFungi:SPCC757.09c.1 GeneID:2539434
KEGG:spo:SPCC757.09c HOGENOM:HOG000184255 OMA:NCESIAY
NextBio:20800596 Uniprot:O74919
Length = 398
Score = 119 (46.9 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 45/170 (26%), Positives = 78/170 (45%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNV 107
Q + R ++ +R+ G +IGK G + ++R +RV+ IS +NV
Sbjct: 92 QQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKAVPNVHDRVLTISGP-LENV 150
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
V A + I + K+ +N + + A +RLLIA S G +IG +G I+
Sbjct: 151 V----RAYRFIIDIFAKNS-TNPDGTPSDAN--TPRKLRLLIAHSLMGSIIGRNGLRIKL 203
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
+++ + I + + LP ++R V+I G V + A+ EIG L
Sbjct: 204 IQDKCSCRM-IASKDMLP-----QSTERTVEIHGTVDNLHAAIWEIGKCL 247
Score = 82 (33.9 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSG--ATIVILAPNQLPLCASAHESDRVVQISG 201
T+R L++ +AG +IG +G+N+ +LR+++ A + PN H DRV+ ISG
Sbjct: 95 TLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKAVPN-------VH--DRVLTISG 145
Query: 202 DVPAVLNA---LVEIGNQLRENP 221
+ V+ A +++I + NP
Sbjct: 146 PLENVVRAYRFIIDIFAKNSTNP 168
Score = 77 (32.2 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 233 NYSA-IRPA--QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+Y A + PA PF++ VT + I +VG +IGR GS IS IR SG+ I +
Sbjct: 302 SYGAQVFPATQMPFLQQPK---VTQNISIPADMVGCIIGRGGSKISEIRRTSGSKISI 356
>RGD|621345 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0005634 GO:GO:0007399 GO:GO:0003723
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048
EMBL:AY262017 IPI:IPI00331877 UniGene:Rn.232418
ProteinModelPortal:Q80WA4 SMR:Q80WA4 PRIDE:Q80WA4 UCSC:RGD:621345
ArrayExpress:Q80WA4 Genevestigator:Q80WA4 Uniprot:Q80WA4
Length = 474
Score = 130 (50.8 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 56/251 (22%), Positives = 108/251 (43%)
Query: 28 KRRREDGEIEGSDPKRRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXX 85
++R + E KR +D ++++PS G +IGK G I ++++E
Sbjct: 25 RKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKL 84
Query: 86 XXXXXRHE---ERVIIISSK-DNDNVVSD--AENALQQIAALILKDDDSNSEASKVAAGH 139
+ ERV +I + N V AE ++++ + K + + +
Sbjct: 85 SKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEK-IREMPQNVAKTEPVSILQPQTTVNP 143
Query: 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
+++++ S AG +IG G ++ + SGA + + +Q P + E RVV +
Sbjct: 144 DRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQE--RVVTV 198
Query: 200 SGDVPAVLNALVEIGNQLRENPPR-QVISISPAYNYSAIRPAQPFVEPTSADYV-TFEML 257
SG+ A+ I +++E+P ++IS Y+ + PT Y T E+L
Sbjct: 199 SGEPEQNRKAVELIIQKIQEDPQSGSCLNIS----YANVTGPVANSNPTGFPYANTAEVL 254
Query: 258 ISESLVGGLIG 268
+ + GL+G
Sbjct: 255 PTAAAAAGLLG 265
Score = 128 (50.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 43/144 (29%), Positives = 72/144 (50%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++LI AG +IG GQ I +L+ +GATI + ++RV I G +
Sbjct: 51 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF----YPGTTERVCLIQGTIE 106
Query: 205 AVLNALVE-IGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A LNA+ I ++RE P + V P S ++P Q V P V ++++ S
Sbjct: 107 A-LNAVHGFIAEKIREMP-QNVAKTEPV---SILQP-QTTVNPDRIKQV--KIIVPNSTA 158
Query: 264 GGLIGRCGSNISRIRNESGAMIKV 287
G +IG+ G+ + I +SGA +++
Sbjct: 159 GLIIGKGGATVKAIMEQSGAWVQL 182
Score = 67 (28.6 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE----QKHRHIQFGG 303
S D V E+ + E+LVG ++G+ G + + +GA I++ KGE ++R + G
Sbjct: 395 SKDVV--EIAVPENLVGAILGKGGKTLVEYQELTGARIQI-SKKGEFVPGTRNRKVTITG 451
Query: 304 SAQQVALAKQRVDEYI-YSQ 322
+ A+ + + I Y Q
Sbjct: 452 TPAATQAAQYLITQRITYEQ 471
>ZFIN|ZDB-GENE-060526-113 [details] [associations]
symbol:nova1 "neuro-oncological ventral antigen 1"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-060526-113 GO:GO:0003723 EMBL:BX005407
GeneTree:ENSGT00650000093048 CTD:4857 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944 OMA:FRQNNTA
EMBL:BC171495 EMBL:BC171499 IPI:IPI00487894 RefSeq:NP_001038254.1
UniGene:Dr.103261 SMR:Q1LYC7 Ensembl:ENSDART00000097684
GeneID:555590 KEGG:dre:555590 InParanoid:Q1LYC7 OrthoDB:EOG40ZQZR
NextBio:20881056 Uniprot:Q1LYC7
Length = 495
Score = 124 (48.7 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 60/287 (20%), Positives = 113/287 (39%)
Query: 1 MAEQGEITVNPTVS----VVTEPEPRHDVSGKRRRE-DGEIEGSDPKRRAKAQD--VLFR 53
M GE+ N S + P+ D+S R+R + E S KR ++ +
Sbjct: 1 MMAGGEVQQNGIFSTPQHLSQSPQMDPDLSDSRKRPLETPTEASSTKRSNTGEEGEYFLK 60
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE---ERVIIISSKDNDNVVSD 110
+++PS G +IGK G I ++++E + ERV +I ++
Sbjct: 61 VLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG--TVEALNG 118
Query: 111 AENALQQIAALILKDDDSNSEASKVAAGHVAANTIR-----LLIAGSQAGCLIGMSGQNI 165
N + + + +E + N R L++ S AG +IG G +
Sbjct: 119 VHNFIAE-KVREMPQSSQKTEPVSILQPQTTVNPDRIKQAKLIVPNSTAGLIIGKGGATV 177
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ- 224
+ + SGA + + +Q P + E RVV +SG+ A+ I +++E+P
Sbjct: 178 KAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQNRKAVEIIVQKIQEDPQSSS 232
Query: 225 VISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCG 271
++IS + + + P P + + + L+G+ G
Sbjct: 233 CLNISYSNITGPVANSNPTGSPFANSTEVLPNAAAAATASTLLGQAG 279
Score = 115 (45.5 bits), Expect = 0.00079, P = 0.00079
Identities = 42/159 (26%), Positives = 71/159 (44%)
Query: 130 SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCAS 189
S + G +++LI AG +IG GQ I +L+ +GATI +
Sbjct: 44 SSTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF----Y 99
Query: 190 AHESDRVVQISGDVPAVLNALVE-IGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTS 248
++RV I G V A LN + I ++RE P P S ++P Q V P
Sbjct: 100 PGTTERVCLIQGTVEA-LNGVHNFIAEKVREMPQSSQ-KTEPV---SILQP-QTTVNPDR 153
Query: 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
++++ S G +IG+ G+ + + +SGA +++
Sbjct: 154 IKQA--KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL 190
Score = 73 (30.8 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE----QKHRHIQFGGSAQQVAL 310
E+ + E+LVG ++G+ G + + +GA I++ KGE ++R + GS
Sbjct: 413 EIAVPENLVGAILGKGGKTLVEYQELTGARIQI-SKKGEFIPGTRNRKVTITGSPAATQA 471
Query: 311 AKQRVDEYI-YSQLIQQAGAQ 330
A+ + + I Y Q ++ Q
Sbjct: 472 AQYLISQRITYEQGVRATNPQ 492
>UNIPROTKB|F1LU04 [details] [associations]
symbol:F1LU04 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 IPI:IPI00777998
Ensembl:ENSRNOT00000016081 Uniprot:F1LU04
Length = 358
Score = 103 (41.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 36/133 (27%), Positives = 63/133 (47%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K REE ER+I ++ N
Sbjct: 29 RLLMQGKEVGSIIGKKGESVKK-REESGAHLNISEGNC--PERIITLAGPTNAT------ 79
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+ A + L++D S S + AA T RL++ SQ G LIG I+++ ++
Sbjct: 80 --FKAFAMIKLEEDRSRSMTNSTAASRPV--TSRLVVPDSQCGSLIGKGICKIKEVGETT 135
Query: 173 GATIVILAPNQLP 185
G V +A + LP
Sbjct: 136 GP--VQVAGDMLP 146
Score = 87 (35.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E L L+G +IGR G+ I+ I SGA IK+ +G R + G A
Sbjct: 279 SAQTTSHE-LTPNDLIGCIIGRQGAKINEIHQMSGAQIKIANPEGSTD-RQVTITGPAAS 336
Query: 308 VALAKQRVD 316
++LA+ ++
Sbjct: 337 ISLAQYLIN 345
Score = 85 (35.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K R SGA + I N C +R++ ++G
Sbjct: 27 TIRLLMQGKEVGSIIGKKGESVKK-REESGAHLNISEGN----CP-----ERIITLAGPT 76
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPA 231
A A I +L E+ R + + + A
Sbjct: 77 NATFKAFAMI--KLEEDRSRSMTNSTAA 102
>UNIPROTKB|F1M8T3 [details] [associations]
symbol:F1M8T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 IPI:IPI00780141
Ensembl:ENSRNOT00000055638 OMA:SISEGNC Uniprot:F1M8T3
Length = 214
Score = 139 (54.0 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 41/163 (25%), Positives = 82/163 (50%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+R+E ER+I ++ N
Sbjct: 7 RLLMHGKEVGSIIGKDGESVKKMRKESGARISISEGNC--PERIITLAGPTN-------- 56
Query: 113 NALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
+ A +I L++D S+S + AA T+ L++ SQ G LIG G I+++R
Sbjct: 57 --FKSFAMIIDKLEEDISSSMTNSTAASRPRV-TVWLVVPASQCGSLIGKGGCKIKEIRE 113
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
S+G + + A + LP + ++R + I+G +++ + +I
Sbjct: 114 STGVQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQI 150
Score = 94 (38.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 5 TIRLLMHGKEVGSIIGKDGESVKKMRKESGARISISEGN----CP-----ERIITLAG-- 53
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
P + I ++L E+ IS S + +A RP
Sbjct: 54 PTNFKSFAMIIDKLEED-----ISSSMTNSTAASRP 84
Score = 69 (29.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQV 308
VT +++ S G LIG+ G I IR +G ++V G R I G Q +
Sbjct: 86 VTVWLVVPASQCGSLIGKGGCKIKEIRESTGVQVQVAGDMLPNSTERAITIAGIPQSI 143
>UNIPROTKB|O00425 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0045182 "translation regulator
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0042035
"regulation of cytokine biosynthetic process" evidence=IC]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 EMBL:AC005082
HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF EMBL:U76705 EMBL:U97188
EMBL:BX640800 EMBL:BX648488 EMBL:AC021876 EMBL:AC079780
EMBL:BC065269 IPI:IPI00165467 IPI:IPI00658000 RefSeq:NP_006538.2
UniGene:Hs.700696 PDB:2E44 PDBsum:2E44 ProteinModelPortal:O00425
SMR:O00425 IntAct:O00425 STRING:O00425 PhosphoSite:O00425
PaxDb:O00425 PRIDE:O00425 Ensembl:ENST00000258729 GeneID:10643
KEGG:hsa:10643 UCSC:uc003swf.3 UCSC:uc003swg.3
GeneCards:GC07M023316 HGNC:HGNC:28868 HPA:HPA002037 MIM:608259
neXtProt:NX_O00425 PharmGKB:PA128394576 InParanoid:O00425
PhylomeDB:O00425 ChiTaRS:Igf2bp3 EvolutionaryTrace:O00425
GenomeRNAi:10643 NextBio:40451 ArrayExpress:O00425 Bgee:O00425
CleanEx:HS_IGF2BP3 CleanEx:HS_IMP3 Genevestigator:O00425
Uniprot:O00425
Length = 579
Score = 149 (57.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 72/325 (22%), Positives = 137/325 (42%)
Query: 18 EPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
+P R + + G GS K+ K D+ R++VP++ +G +IGKEG I+ I +
Sbjct: 167 QPRGRRGLGQRGSSRQGS-PGSVSKQ--KPCDLPLRLLVPTQFVGAIIGKEGATIRNITK 223
Query: 78 EXXXXXXXXXX--XXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKV 135
+ E+ + I+S+ + + A + I ++ K+ ++
Sbjct: 224 QTQSKIDVHRKENAGAAEKSITILSTPEGTSA------ACKSILEIMHKEAQDIKFTEEI 277
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
+++L + G LIG G+N++K+ + I I +L L + +R
Sbjct: 278 P--------LKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTL----YNPER 325
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAIR---PAQPFVEP 246
+ + G+V A EI ++RE+ + S++ P N +A+ P P
Sbjct: 326 TITVKGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPP 385
Query: 247 TSAD-------YVTFEMLISESL--------VGGLIGRCGSNISRIRNESGAMIKVYGGK 291
TS Y FE +E++ VG +IG+ G +I ++ +GA IK+ +
Sbjct: 386 TSGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAE 445
Query: 292 G-EQKHRHIQFGGSAQQVALAKQRV 315
+ K R + G + A+ R+
Sbjct: 446 APDAKVRMVIITGPPEAQFKAQGRI 470
>UNIPROTKB|F8VXH9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022190
ProteinModelPortal:F8VXH9 SMR:F8VXH9 Ensembl:ENST00000550520
ArrayExpress:F8VXH9 Bgee:F8VXH9 Uniprot:F8VXH9
Length = 160
Score = 125 (49.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 42/151 (27%), Positives = 76/151 (50%)
Query: 66 GKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENALQQIAALI--- 122
GK+G ++K+REE ER+I ++ N A+ + A+I
Sbjct: 22 GKKGESVKKMREESGARINISEGNC--PERIITLAGPTN---------AIFKAFAMIIDK 70
Query: 123 LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
L++D S+S + AA T+RL++ SQ G LIG G I+++R S+GA + + A +
Sbjct: 71 LEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGD 128
Query: 183 QLPLCASAHESDRVVQISGDVPAVLNALVEI 213
LP + ++R + I+G +++ + +I
Sbjct: 129 MLP-----NSTERAITIAGIPQSIIECVKQI 154
>UNIPROTKB|E2RA50 [details] [associations]
symbol:E2RA50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000002165 NextBio:20851993 Uniprot:E2RA50
Length = 439
Score = 101 (40.6 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 45/150 (30%), Positives = 65/150 (43%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXX 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 XXXXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
ER++ IS+ D E + ILK E + G +R
Sbjct: 80 DSSG--PERILSISA--------DIETIGE-----ILKKIIPTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
LLI S AG +IG+ G I+K ++ TI
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKKFGGNTQTTI 154
Score = 89 (36.4 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
+T ++ I + L G +IG+ G I +IR+ESGA IK+ + R I G+ Q+ A
Sbjct: 364 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 423
Query: 312 K 312
+
Sbjct: 424 Q 424
Score = 85 (35.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI S AG +IG+ G I+K ++ TI + C H +DRVV I G
Sbjct: 123 LRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLFQE-----CCP-HSTDRVVLIGGKPD 176
Query: 205 AVLNALVEIGNQLRENP 221
V+ + I + + E+P
Sbjct: 177 RVVECIKIILDLISESP 193
Score = 76 (31.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + P+ +S E R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV--PD-----SSGPE--RILSISADIE 95
Query: 205 AVLNALVEIGNQLRE 219
+ L +I L E
Sbjct: 96 TIGEILKKIIPTLEE 110
>UNIPROTKB|D4ADH2 [details] [associations]
symbol:D4ADH2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00197192
PRIDE:D4ADH2 Ensembl:ENSRNOT00000026359 OMA:IFHICAV Uniprot:D4ADH2
Length = 311
Score = 95 (38.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
NA+ + A+I+ D +S + A+ ++ SQ G LIG G+ I+++R S+
Sbjct: 65 NAIFKAFAMII-DKPEEDISSSMTNSTAASRPPVTVVPASQCGSLIG-KGK-IKEIREST 121
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA + A N LP + ++R + I+G +P+++ + +I + E P R
Sbjct: 122 GAQVQA-AGNMLP-----NSTERAITIAGILPSIIECVKQICVVMLETPRR 166
Score = 91 (37.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 234 YSAIRPAQPFVE-----PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+S I + P V+ SA + E+ + L+G +IGR + I+ IR SGA IK
Sbjct: 211 FSGIESSSPEVKGYLGLDESAQTTSHELTLPNDLIGCIIGRQDAKINEIRQMSGAQIKTA 270
Query: 289 GGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
R + G A ++LA+ ++ + S+
Sbjct: 271 NPVEGSTDRQVTITGPAASISLAQYLINARLSSE 304
Score = 81 (33.6 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 32/133 (24%), Positives = 62/133 (46%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +I K ++K++E+ ER+I ++ N
Sbjct: 17 RLLMHGKEVGSIIRKSRESVKKLQEKGARINISEGNC---PERIITLAGPTN-------- 65
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A+ + A+I+ D +S + A+ ++ SQ G LIG G+ I+++R S+
Sbjct: 66 -AIFKAFAMII-DKPEEDISSSMTNSTAASRPPVTVVPASQCGSLIG-KGK-IKEIREST 121
Query: 173 GATIVILAPNQLP 185
GA + A N LP
Sbjct: 122 GAQVQA-AGNMLP 133
Score = 77 (32.2 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 32/105 (30%), Positives = 51/105 (48%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +I S ++++KL+ GA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIRKSRESVKKLQEK-GARINISEGN----CP-----ERIITLAGPT 64
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTS 248
A+ A I ++ P + IS S + +A RP V P S
Sbjct: 65 NAIFKAFAMIIDK-----PEEDISSSMTNSTAASRPPVTVV-PAS 103
>UNIPROTKB|J9P8W9 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643
OMA:EAQDTKF EMBL:AAEX03009368 EMBL:AAEX03009369 EMBL:AAEX03009370
RefSeq:XP_539474.2 Ensembl:ENSCAFT00000046043 GeneID:482357
KEGG:cfa:482357 Uniprot:J9P8W9
Length = 579
Score = 147 (56.8 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 72/325 (22%), Positives = 136/325 (41%)
Query: 18 EPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
+P R + G GS K+ K D+ R++VP++ +G +IGKEG I+ I +
Sbjct: 167 QPRGRRGFGQRGSSRQGS-PGSVSKQ--KPCDLPLRLLVPTQFVGAIIGKEGATIRNITK 223
Query: 78 EXXXXXXXXXX--XXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKV 135
+ E+ + I+S+ + + A + I ++ K+ ++
Sbjct: 224 QTQSKIDVHRKENAGAAEKSITILSTPEGTSA------ACKSILEIMHKEAQDIKFTEEI 277
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
+++L + G LIG G+N++K+ + I I +L L + +R
Sbjct: 278 P--------LKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTL----YNPER 325
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAIR---PAQPFVEP 246
+ + G+V A EI ++RE+ + S++ P N +A+ P P
Sbjct: 326 TITVKGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPP 385
Query: 247 TSAD-------YVTFEMLISESL--------VGGLIGRCGSNISRIRNESGAMIKVYGGK 291
TS Y FE +E++ VG +IG+ G +I ++ +GA IK+ +
Sbjct: 386 TSGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAE 445
Query: 292 G-EQKHRHIQFGGSAQQVALAKQRV 315
+ K R + G + A+ R+
Sbjct: 446 APDAKVRMVIITGPPEAQFKAQGRI 470
>UNIPROTKB|Q5T6W5 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00514561 SMR:Q5T6W5 MINT:MINT-1445469
Ensembl:ENST00000435158 Uniprot:Q5T6W5
Length = 428
Score = 92 (37.4 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G
Sbjct: 112 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CCP-HSTDRVVLIGGKPD 165
Query: 205 AVLNALVEIGNQLRENP 221
V+ + I + + E+P
Sbjct: 166 RVVECIKIILDLISESP 182
Score = 89 (36.4 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
+T ++ I + L G +IG+ G I +IR+ESGA IK+ + R I G+ Q+ A
Sbjct: 353 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 412
Query: 312 K 312
+
Sbjct: 413 Q 413
Score = 45 (20.9 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQI 61
GKR ED E E + + R + V RI++ S+ I
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNI 54
>MGI|MGI:1890359 [details] [associations]
symbol:Igf2bp3 "insulin-like growth factor 2 mRNA binding
protein 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890359 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HSSP:Q9Y6M1 HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OrthoDB:EOG405S0T
CTD:10643 OMA:EAQDTKF ChiTaRS:Igf2bp3 EMBL:AK088465 EMBL:AK011689
EMBL:AK147140 EMBL:BC045138 EMBL:BC049082 IPI:IPI00331315
RefSeq:NP_076159.3 UniGene:Mm.281018 ProteinModelPortal:Q9CPN8
SMR:Q9CPN8 STRING:Q9CPN8 PhosphoSite:Q9CPN8 PaxDb:Q9CPN8
PRIDE:Q9CPN8 Ensembl:ENSMUST00000031838 GeneID:140488
KEGG:mmu:140488 UCSC:uc009bwi.2 InParanoid:Q9CPN8 NextBio:369800
Bgee:Q9CPN8 Genevestigator:Q9CPN8 Uniprot:Q9CPN8
Length = 579
Score = 146 (56.5 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 71/328 (21%), Positives = 138/328 (42%)
Query: 18 EPEPRHDVSGKRRR-EDGEIEGSDPKRRAKAQ--DVLFRIIVPSRQIGKVIGKEGHRIQK 74
+ P + G+R + G + P +K + D+ R++VP++ +G +IGKEG I+
Sbjct: 161 QQNPSPQLRGRRGPGQRGSSRQASPGSVSKQKPCDLPLRLLVPTQFVGAIIGKEGATIRN 220
Query: 75 IREEXXXXXXXXXX--XXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEA 132
I ++ E+ + I+S+ + + A + I ++ K+
Sbjct: 221 ITKQTQSKIDVHRKENTGAAEKSITILSTPEGTSA------ACKSILEIMHKEAQDIKFT 274
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
++ +++L + G LIG G+N++K+ + I I +L L +
Sbjct: 275 EEIP--------LKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTL----YN 322
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAIR---PAQPF 243
+R + + G V A EI ++RE+ + S++ P N +A+ P
Sbjct: 323 PERTITVKGSVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGM 382
Query: 244 VEPTSAD-------YVTFEMLISESL--------VGGLIGRCGSNISRIRNESGAMIKVY 288
PTS Y FE +E++ VG +IG+ G +I ++ +GA IK+
Sbjct: 383 PPPTSGPPSTLTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIA 442
Query: 289 GGKG-EQKHRHIQFGGSAQQVALAKQRV 315
+ + K R + G + A+ R+
Sbjct: 443 PAEAPDAKVRMVIITGPPEAQFKAQGRI 470
>UNIPROTKB|Q9GZT1 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IDA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IDA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=IDA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007050 "cell
cycle arrest" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0008630
GO:GO:0006977 EMBL:CH471055 GO:GO:0007050 GO:GO:0003723
EMBL:AC115284 HOGENOM:HOG000182823 HOVERGEN:HBG053520
UniGene:Hs.20930 HGNC:HGNC:8652 NextBio:62848 EMBL:AF257770
EMBL:AF257772 IPI:IPI00006997 HSSP:Q9UNW9 SMR:Q9GZT1 STRING:Q9GZT1
Ensembl:ENST00000395014 UCSC:uc003dcc.2 Uniprot:Q9GZT1
Length = 424
Score = 111 (44.1 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 34/95 (35%), Positives = 48/95 (50%)
Query: 222 PRQVISISPAYNYSAIRPAQPFVEP---TSADYVTFEMLISESLVGGLIGRCGSNISRIR 278
P +V + ++ A+ A P V P + E L+ L+G +IGR GS IS IR
Sbjct: 231 PAEVTKLQQLSSH-AVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIR 289
Query: 279 NESGAMIKVYGGKGEQK-HRHIQFGGSAQQVALAK 312
SGA IK+ G + E RH+ GS +ALA+
Sbjct: 290 QMSGAHIKI-GNQAEGAGERHVTITGSPVSIALAQ 323
Score = 74 (31.1 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
V R+++P+ Q G +IGK G +I++IRE
Sbjct: 68 VTLRLVIPASQCGSLIGKAGTKIKEIRE 95
Score = 71 (30.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCL 157
S + ++ + A+ ++I D + A+ G+V+ T+RL+I SQ G L
Sbjct: 23 SCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSL 82
Query: 158 IGMSGQNIEKLRNSSG 173
IG +G I+++R G
Sbjct: 83 IGKAGTKIKEIREVRG 98
>ZFIN|ZDB-GENE-070912-44 [details] [associations]
symbol:igf2bp2a "insulin-like growth factor 2 mRNA
binding protein 2a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-070912-44
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CR936497
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG4FBHSJ EMBL:CT737147
IPI:IPI00865862 SMR:A9C3V8 Ensembl:ENSDART00000102419
Uniprot:A9C3V8
Length = 606
Score = 130 (50.8 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 54/219 (24%), Positives = 89/219 (40%)
Query: 19 PEPRHDVSGKRRRE-DGE--IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
P R+ G+ RE D + GS R K D R++VP++ +G +IGKEG I+ I
Sbjct: 164 PGTRNRRGGRTSREQDSQPGTSGSSLGSRQKQPDFPLRMLVPTQFVGAIIGKEGLTIKNI 223
Query: 76 REEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASK 134
++ E+ I I S A I ++ K+
Sbjct: 224 TKQTQSKVDIHRKENAGAAEKPITIHSTPEG-----CSTACHMIMDIMQKEAVDTKVTED 278
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
+ +++L S G LIG G+N++K+ + I I + L + + +
Sbjct: 279 IP--------LKILAHNSLVGRLIGKEGRNLKKIEEDTETKITISSLQDLTI----YNPE 326
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN 233
R + + G + A A VEI +LRE V +I+ N
Sbjct: 327 RTIIVKGSIEACCRAEVEIMKKLREAYENDVAAINQQSN 365
Score = 57 (25.1 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 247 TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
T+ + + I VG +IG+ G +I ++ +GA IK+
Sbjct: 429 TAPEQEVVYLFIPTQAVGAIIGKKGQHIKQLARFAGASIKI 469
Score = 46 (21.3 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 19/84 (22%), Positives = 39/84 (46%)
Query: 247 TSADYVTFE--MLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK--GEQKHRHIQFG 302
T+ + V E + + S G +IG+ G ++ ++N + A + V + E ++
Sbjct: 509 TAKEEVKLETHIKVPSSAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENDEVFVKIS 568
Query: 303 GSAQQVALAKQRVDEYIYSQLIQQ 326
G A++++ E I Q+ QQ
Sbjct: 569 GHFFASQTAQRKIREII-QQVKQQ 591
>UNIPROTKB|F1MPB2 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643 OMA:EAQDTKF
EMBL:DAAA02010222 IPI:IPI00712553 RefSeq:NP_001179217.1
UniGene:Bt.80827 PRIDE:F1MPB2 Ensembl:ENSBTAT00000025854
GeneID:539650 KEGG:bta:539650 NextBio:20878131 Uniprot:F1MPB2
Length = 580
Score = 142 (55.0 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 72/326 (22%), Positives = 134/326 (41%)
Query: 18 EPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
+P R + G GS K+ K D+ R++VP++ +G +IGKEG I+ I +
Sbjct: 167 QPRGRRGFGQRGSSRQGS-PGSVSKQ--KPCDLPLRLLVPTQFVGAIIGKEGATIRNITK 223
Query: 78 EXXXXXXXXXX--XXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKV 135
+ E+ + I+S+ + + A + I ++ K+ ++
Sbjct: 224 QTQSKIDVHRKENAGAAEKSITILSTPEGTSA------ACKSILEIMHKEAQDIKFTEEI 277
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
+++L + G LIG G+N++K+ + I I +L L + +R
Sbjct: 278 P--------LKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTL----YNPER 325
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAIR---PAQPFVEP 246
+ + G+V A EI ++RE+ + S++ P N +A+ P P
Sbjct: 326 TITVKGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPP 385
Query: 247 TSAD-------YVTFE---------MLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG 290
TS Y FE + I VG +IG+ G +I ++ +GA IK+
Sbjct: 386 TSGPPSAITPPYPQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPA 445
Query: 291 KG-EQKHRHIQFGGSAQQVALAKQRV 315
+ + K R + G + A+ R+
Sbjct: 446 EAPDAKVRMVIITGPPEAQFKAQGRI 471
>UNIPROTKB|D4A8D6 [details] [associations]
symbol:D4A8D6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00559929
Ensembl:ENSRNOT00000045980 Uniprot:D4A8D6
Length = 330
Score = 111 (44.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 37/136 (27%), Positives = 69/136 (50%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G ++GK+G +K+ EE ER+I + +
Sbjct: 17 RLLMHGKEVGSIMGKKGESARKLCEECGTLINILEENCL--ERIITFAGQ---------R 65
Query: 113 NALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
NA+ + A+I L+ D S+S A+ AA + N + L++ Q G LIG G I+++R
Sbjct: 66 NAIFKAFAMIIDKLEGDLSSSIANSTAASRPSVN-LCLVVPDCQCGSLIGKGGCKIKEIR 124
Query: 170 NSSGATIVILAPNQLP 185
++GA + + A + LP
Sbjct: 125 ENTGAQVQV-AGHMLP 139
Score = 67 (28.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 17/75 (22%), Positives = 33/75 (44%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ + L+G +I G+ I+ + GA IK+ + GS
Sbjct: 249 SAQTTSHELTVPNDLIGCIIRHQGAEINEVCQACGAQIKIANPMEGSTDWQVTITGSTAS 308
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ + + S+
Sbjct: 309 ISLAQYLISVRLSSE 323
>UNIPROTKB|E1BKJ7 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010610 "regulation of mRNA stability involved in response to
stress" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:DAAA02049054 EMBL:DAAA02049055 IPI:IPI00699469
RefSeq:NP_001179383.1 UniGene:Bt.27949 Ensembl:ENSBTAT00000015586
GeneID:516853 KEGG:bta:516853 NextBio:20872317 Uniprot:E1BKJ7
Length = 577
Score = 140 (54.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 70/310 (22%), Positives = 128/310 (41%)
Query: 6 EITVNPTVSVVTEPEP-RHDVSGKRR--REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIG 62
+++ P + PE R G R R+ + P ++ + D+ R++VP++ +G
Sbjct: 150 KVSYIPDEQITQGPENGRRGGFGSRGQPRQGSPVAAGAPAKQQQV-DIPLRLLVPTQYVG 208
Query: 63 KVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVVSDAENALQQIAAL 121
+IGKEG I+ I ++ E+ I + S +A + I +
Sbjct: 209 AIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEG-----CSSACKMILEI 263
Query: 122 ILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+ K+ A +V +++L + G LIG G+N++K+ + I I +
Sbjct: 264 MHKEAKDTKTADEVP--------LKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSL 315
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYS 235
L L + +R + + G + A EI ++RE V ++S P N +
Sbjct: 316 QDLTL----YNPERTITVKGAIENCCRAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLA 371
Query: 236 AIR--PAQPFVEPT-------SADYVTF------EML---ISESLVGGLIGRCGSNISRI 277
A+ PA P +A Y +F EM+ I VG +IG+ G +I ++
Sbjct: 372 AVGLFPASSSAVPPPPSSVTGAAPYSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQL 431
Query: 278 RNESGAMIKV 287
+ A IK+
Sbjct: 432 SRFASASIKI 441
Score = 42 (19.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 258 ISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ S G +IG+ G ++ ++N + A + V
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEVVV 523
>UNIPROTKB|E2RTC5 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0045182 "translation regulator activity"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0010610 "regulation of mRNA stability involved in
response to stress" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:AAEX03006519 EMBL:AAEX03006520 RefSeq:XP_548184.2
ProteinModelPortal:E2RTC5 Ensembl:ENSCAFT00000026763 GeneID:491064
KEGG:cfa:491064 Uniprot:E2RTC5
Length = 577
Score = 140 (54.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 70/310 (22%), Positives = 128/310 (41%)
Query: 6 EITVNPTVSVVTEPEP-RHDVSGKRR--REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIG 62
+++ P + PE R G R R+ + P ++ + D+ R++VP++ +G
Sbjct: 150 KVSYIPDEQIAQGPENGRRGGFGSRGQPRQGSPVAAGAPAKQQQV-DIPLRLLVPTQYVG 208
Query: 63 KVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVVSDAENALQQIAAL 121
+IGKEG I+ I ++ E+ I + S +A + I +
Sbjct: 209 AIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEG-----CSSACKMILEI 263
Query: 122 ILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+ K+ A +V +++L + G LIG G+N++K+ + I I +
Sbjct: 264 MHKEAKDTKTADEVP--------LKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSL 315
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYS 235
L L + +R + + G + A EI ++RE V ++S P N +
Sbjct: 316 QDLTL----YNPERTITVKGAIENCCRAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLA 371
Query: 236 AIR--PAQPFVEPT-------SADYVTF------EML---ISESLVGGLIGRCGSNISRI 277
A+ PA P +A Y +F EM+ I VG +IG+ G +I ++
Sbjct: 372 AVGLFPASSSAVPPPPSSVTGAAPYSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQL 431
Query: 278 RNESGAMIKV 287
+ A IK+
Sbjct: 432 SRFASASIKI 441
Score = 42 (19.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 258 ISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ S G +IG+ G ++ ++N + A + V
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEVVV 523
>UNIPROTKB|Q9NZI8 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0043197 "dendritic
spine" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IMP]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IDA]
[GO:0005829 "cytosol" evidence=TAS] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0045182 "translation
regulator activity" evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IDA] [GO:0042035 "regulation of cytokine biosynthetic
process" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737
Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182 GO:GO:0030027
GO:GO:0003723 GO:GO:0048027 GO:GO:0003730 GO:GO:0042035
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 EMBL:AF198254 EMBL:DQ227344
EMBL:AC091133 EMBL:AC105030 IPI:IPI00008557 IPI:IPI00930694
RefSeq:NP_001153895.1 RefSeq:NP_006537.3 UniGene:Hs.144936 PDB:3KRM
PDBsum:3KRM ProteinModelPortal:Q9NZI8 SMR:Q9NZI8 DIP:DIP-38139N
IntAct:Q9NZI8 STRING:Q9NZI8 PhosphoSite:Q9NZI8 DMDM:296434536
PaxDb:Q9NZI8 PeptideAtlas:Q9NZI8 PRIDE:Q9NZI8 DNASU:10642
Ensembl:ENST00000290341 Ensembl:ENST00000431824 GeneID:10642
KEGG:hsa:10642 UCSC:uc002iom.3 GeneCards:GC17P047074
H-InvDB:HIX0013955 HGNC:HGNC:28866 HPA:HPA021367 MIM:608288
neXtProt:NX_Q9NZI8 PharmGKB:PA143485501 InParanoid:Q9NZI8
PhylomeDB:Q9NZI8 EvolutionaryTrace:Q9NZI8 GenomeRNAi:10642
NextBio:40447 ArrayExpress:Q9NZI8 Bgee:Q9NZI8 CleanEx:HS_IGF2BP1
CleanEx:HS_ZBP1 Genevestigator:Q9NZI8 GO:GO:0006403 Uniprot:Q9NZI8
Length = 577
Score = 140 (54.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 70/310 (22%), Positives = 128/310 (41%)
Query: 6 EITVNPTVSVVTEPEP-RHDVSGKRR--REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIG 62
+++ P + PE R G R R+ + P ++ + D+ R++VP++ +G
Sbjct: 150 KVSYIPDEQIAQGPENGRRGGFGSRGQPRQGSPVAAGAPAKQQQV-DIPLRLLVPTQYVG 208
Query: 63 KVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVVSDAENALQQIAAL 121
+IGKEG I+ I ++ E+ I + S +A + I +
Sbjct: 209 AIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEG-----CSSACKMILEI 263
Query: 122 ILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+ K+ A +V +++L + G LIG G+N++K+ + I I +
Sbjct: 264 MHKEAKDTKTADEVP--------LKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSL 315
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYS 235
L L + +R + + G + A EI ++RE V ++S P N +
Sbjct: 316 QDLTL----YNPERTITVKGAIENCCRAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLA 371
Query: 236 AIR--PAQPFVEPT-------SADYVTF------EML---ISESLVGGLIGRCGSNISRI 277
A+ PA P +A Y +F EM+ I VG +IG+ G +I ++
Sbjct: 372 AVGLFPASSSAVPPPPSSVTGAAPYSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQL 431
Query: 278 RNESGAMIKV 287
+ A IK+
Sbjct: 432 SRFASASIKI 441
Score = 42 (19.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 258 ISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ S G +IG+ G ++ ++N + A + V
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEVVV 523
>RGD|708580 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0006403 "RNA localization" evidence=IMP] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=ISS]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0043197 "dendritic spine" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:708580
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
GO:GO:0030425 Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182
GO:GO:0030027 GO:GO:0048027 GO:GO:0003730 GO:GO:0010494
GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OMA:EQETVHV OrthoDB:EOG405S0T GO:GO:0010610
GO:GO:0006403 EMBL:AF541940 IPI:IPI00192556 RefSeq:NP_783184.1
UniGene:Rn.77572 ProteinModelPortal:Q8CGX0 SMR:Q8CGX0 STRING:Q8CGX0
PhosphoSite:Q8CGX0 Ensembl:ENSRNOT00000008139 GeneID:303477
KEGG:rno:303477 UCSC:RGD:708580 InParanoid:Q8CGX0 NextBio:651402
ArrayExpress:Q8CGX0 Genevestigator:Q8CGX0 Uniprot:Q8CGX0
Length = 577
Score = 139 (54.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 70/310 (22%), Positives = 128/310 (41%)
Query: 6 EITVNPTVSVVTEPEP-RHDVSGKRR--REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIG 62
+++ P + PE R G R R+ + P ++ + D+ R++VP++ +G
Sbjct: 150 KVSYIPDEQIAQGPENGRRGGFGSRGQPRQGSPVAAGAPAKQQQV-DIPLRLLVPTQYVG 208
Query: 63 KVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVVSDAENALQQIAAL 121
+IGKEG I+ I ++ E+ I + S +A + I +
Sbjct: 209 AIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEG-----CSSACKMILEI 263
Query: 122 ILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+ K+ A +V +++L + G LIG G+N++K+ + I I +
Sbjct: 264 MHKEAKDTKTADEVP--------LKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSL 315
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYS 235
L L + +R + + G + A EI ++RE V ++S P N +
Sbjct: 316 QDLTL----YNPERTITVKGAIENCCRAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLA 371
Query: 236 AIR--PAQPFVEPT-------SADYVTF------EML---ISESLVGGLIGRCGSNISRI 277
A+ PA P +A Y +F EM+ I VG +IG+ G +I ++
Sbjct: 372 AVGLFPASSSAVPPPPSSVTGAAPYGSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQL 431
Query: 278 RNESGAMIKV 287
+ A IK+
Sbjct: 432 SRFASASIKI 441
Score = 42 (19.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 258 ISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ S G +IG+ G ++ ++N + A + V
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEVVV 523
>UNIPROTKB|I3L9X2 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:10642 GeneTree:ENSGT00530000063171 OMA:EQETVHV
EMBL:FP312864 RefSeq:XP_003358128.1 Ensembl:ENSSSCT00000022825
GeneID:100620940 KEGG:ssc:100620940 Uniprot:I3L9X2
Length = 577
Score = 138 (53.6 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 69/310 (22%), Positives = 129/310 (41%)
Query: 6 EITVNPTVSVVTEPEP--RHDVSGKRR-REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIG 62
+++ P + PE R S + + R+ + P ++ + D+ R++VP++ +G
Sbjct: 150 KVSYIPDEQIAQGPENGRRGGFSSRGQPRQGSPVAAGAPAKQQQV-DIPLRLLVPTQYVG 208
Query: 63 KVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVVSDAENALQQIAAL 121
+IGKEG I+ I ++ E+ I + S +A + I +
Sbjct: 209 AIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEG-----CSSACKMILEI 263
Query: 122 ILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+ K+ A +V +++L + G LIG G+N++K+ + I I +
Sbjct: 264 MHKEAKDTKTADEVP--------LKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSL 315
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYS 235
L L + +R + + G + A EI ++RE V ++S P N +
Sbjct: 316 QDLTL----YNPERTITVKGAIENCCRAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLA 371
Query: 236 AIR--PAQPFVEPT-------SADYVTF------EML---ISESLVGGLIGRCGSNISRI 277
A+ PA P +A Y +F EM+ I VG +IG+ G +I ++
Sbjct: 372 AVGLFPASSSAVPPPPSSVTGAAPYSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQL 431
Query: 278 RNESGAMIKV 287
+ A IK+
Sbjct: 432 SRFASASIKI 441
Score = 42 (19.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 258 ISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ S G +IG+ G ++ ++N + A + V
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEVVV 523
>MGI|MGI:1890357 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006403 "RNA localization"
evidence=ISO] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010610
"regulation of mRNA stability involved in response to stress"
evidence=ISO] [GO:0017148 "negative regulation of translation"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0045182 "translation
regulator activity" evidence=ISO] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=ISO] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
EMBL:AF061569 MGI:MGI:1890357 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 GO:GO:0030425 Gene3D:3.30.70.330
GO:GO:0045182 GO:GO:0048027 GO:GO:0003730 EMBL:AL603682
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 GO:GO:0006403 EMBL:AK044850
EMBL:AK013940 EMBL:AL606704 EMBL:BC051679 IPI:IPI00131056
RefSeq:NP_034081.1 UniGene:Mm.294769 UniGene:Mm.490105
ProteinModelPortal:O88477 SMR:O88477 DIP:DIP-48578N STRING:O88477
PhosphoSite:O88477 PaxDb:O88477 PRIDE:O88477
Ensembl:ENSMUST00000013559 GeneID:140486 KEGG:mmu:140486
UCSC:uc007lay.2 InParanoid:O88477 NextBio:369796 Bgee:O88477
Genevestigator:O88477 Uniprot:O88477
Length = 577
Score = 138 (53.6 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 70/310 (22%), Positives = 127/310 (40%)
Query: 6 EITVNPTVSVVTEPEP-RHDVSGKRR--REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIG 62
+++ P + PE R G R R+ + P ++ D+ R++VP++ +G
Sbjct: 150 KVSYIPDEQITQGPENGRRGGFGSRGQPRQGSPVAAGAPAKQQPV-DIPLRLLVPTQYVG 208
Query: 63 KVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVVSDAENALQQIAAL 121
+IGKEG I+ I ++ E+ I + S +A + I +
Sbjct: 209 AIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEG-----CSSACKMILEI 263
Query: 122 ILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+ K+ A +V +++L + G LIG G+N++K+ + I I +
Sbjct: 264 MHKEAKDTKTADEVP--------LKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSL 315
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYS 235
L L + +R + + G + A EI ++RE V ++S P N +
Sbjct: 316 QDLTL----YNPERTITVKGAIENCCRAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLA 371
Query: 236 AIR--PAQPFVEPT-------SADYVTF------EML---ISESLVGGLIGRCGSNISRI 277
A+ PA P +A Y +F EM+ I VG +IG+ G +I ++
Sbjct: 372 AVGLFPASSSAVPPPPSSVTGAAPYSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQL 431
Query: 278 RNESGAMIKV 287
+ A IK+
Sbjct: 432 SRFASASIKI 441
Score = 42 (19.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 258 ISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ S G +IG+ G ++ ++N + A + V
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEVVV 523
>UNIPROTKB|O42254 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182
GO:GO:0048027 GO:GO:0003730 GO:GO:0010494 GO:GO:0070937
GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725 EMBL:AF026527
IPI:IPI00576155 RefSeq:NP_990402.1 UniGene:Gga.567
ProteinModelPortal:O42254 SMR:O42254 Ensembl:ENSGALT00000001975
GeneID:395953 KEGG:gga:395953 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 InParanoid:O42254
OMA:EQETVHV OrthoDB:EOG405S0T NextBio:20816018 GO:GO:0010610
Uniprot:O42254
Length = 576
Score = 134 (52.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 70/309 (22%), Positives = 124/309 (40%)
Query: 6 EITVNPTVSVVTEPEP-RHDVSGKRR--REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIG 62
+++ P V PE R G R R+ + P ++ D+ R++VP++ +G
Sbjct: 150 KVSYIPDEQSVQGPENGRRGGFGARGAPRQGSPVTAGAPVKQQPV-DIPLRLLVPTQYVG 208
Query: 63 KVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVVSDAENALQQIAAL 121
+IGKEG I+ I ++ E+ I I S A + I +
Sbjct: 209 AIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISIHSTPEG-----CSAACKMILEI 263
Query: 122 ILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+ K+ A +V +++L + G LIG G+N++K+ + I I +
Sbjct: 264 MQKEAKDTKTADEVP--------LKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSL 315
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYS 235
L L + +R + + G + A EI ++RE V ++S P N +
Sbjct: 316 QDLTL----YNPERTITVKGSIENCCKAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLA 371
Query: 236 AIR--PAQPFVEPT-------SADYVTF--------EMLISESLVGGLIGRCGSNISRIR 278
A+ PA P +A Y +F + I VG +IG+ G +I ++
Sbjct: 372 AVGLFPASSNAVPPPPSSVSGAAPYSSFMPPEQETVHVFIPAQAVGAIIGKKGQHIKQLS 431
Query: 279 NESGAMIKV 287
+ A IK+
Sbjct: 432 RFASASIKI 440
Score = 44 (20.5 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 14/71 (19%), Positives = 36/71 (50%)
Query: 258 ISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHI--QFGGSAQQVALAKQRV 315
+ S G +IG+ G ++ ++N + A + V + ++ + + G +A++++
Sbjct: 493 VPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENEQVIVKIIGHFYASQMAQRKI 552
Query: 316 DEYIYSQLIQQ 326
+ I +Q+ QQ
Sbjct: 553 RD-ILAQVKQQ 562
>UNIPROTKB|F1NP95 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02003296
EMBL:AADN02003297 EMBL:AADN02003298 EMBL:AADN02003299
EMBL:AADN02003300 EMBL:AADN02003301 EMBL:AADN02003302
EMBL:AADN02003303 EMBL:AADN02003304 EMBL:AADN02003305
EMBL:AADN02003306 EMBL:AADN02003307 EMBL:AADN02003308
EMBL:AADN02003309 EMBL:AADN02003310 EMBL:AADN02003311
EMBL:AADN02003312 EMBL:AADN02003313 EMBL:AADN02003314
EMBL:AADN02003315 IPI:IPI00814536 Ensembl:ENSGALT00000016012
ArrayExpress:F1NP95 Uniprot:F1NP95
Length = 345
Score = 133 (51.9 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 56/251 (22%), Positives = 109/251 (43%)
Query: 28 KRRREDGEIEGSDPKRRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXX 85
++R + E KR +D ++++PS G +IGK G I ++++E
Sbjct: 9 RKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKL 68
Query: 86 XXXXXRHE---ERVIIISSK-DNDNVVSD--AENALQQIAALILKDDDSNSEASKVAAGH 139
+ ERV +I + N V AE ++++ + K + + +
Sbjct: 69 SKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEK-IREMPQNVAKTEPVSILQPQTTVNP 127
Query: 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
+++++ S AG +IG G ++ + SGA + + +Q P + E RVV +
Sbjct: 128 DRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQE--RVVTV 182
Query: 200 SGDVPAVLNALVEIGNQLRENPPR-QVISISPAYNYSAIRPAQPFVEPTSADYV-TFEML 257
SG+ A+ I +++E+P ++IS Y+ + PT + Y T E+L
Sbjct: 183 SGEPEQNRKAVELIIQKIQEDPQSGSCLNIS----YANVTGPVANSNPTGSPYANTAEVL 238
Query: 258 ISESLVGGLIG 268
+ + GL+G
Sbjct: 239 PTAAAAAGLLG 249
Score = 129 (50.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 44/144 (30%), Positives = 72/144 (50%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++LI AG +IG GQ I +L+ +GATI + ++RV I G V
Sbjct: 35 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF----YPGTTERVCLIQGTVE 90
Query: 205 AVLNALVE-IGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A LNA+ I ++RE P + V P S ++P Q V P V ++++ S
Sbjct: 91 A-LNAVHGFIAEKIREMP-QNVAKTEPV---SILQP-QTTVNPDRIKQV--KIIVPNSTA 142
Query: 264 GGLIGRCGSNISRIRNESGAMIKV 287
G +IG+ G+ + I +SGA +++
Sbjct: 143 GLIIGKGGATVKAIMEQSGAWVQL 166
>ASPGD|ASPL0000045500 [details] [associations]
symbol:AN10257 species:162425 "Emericella nidulans"
[GO:0010834 "telomere maintenance via telomere shortening"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:BN001307 GO:GO:0003723
EnsemblFungi:CADANIAT00008760 OMA:ESENNAE Uniprot:C8VLW6
Length = 465
Score = 94 (38.1 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 34/147 (23%), Positives = 64/147 (43%)
Query: 34 GEIEGSDPKRRAKAQD----VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXX 89
GE G+ +++ + QD + R ++ S++ VIGK G + +IR
Sbjct: 89 GEAAGNQSEQQ-RPQDESNWIHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYS 147
Query: 90 XRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
ER++ VS ++A+ + LI++ + N + +RLLI
Sbjct: 148 RGAVERIL---------TVSGPQDAVAKAFGLIIRTLN-NEPLDAASTAQSKTYPLRLLI 197
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATI 176
G +IG G I +++++SGA +
Sbjct: 198 PHILIGSIIGKGGTRIREIQDASGARL 224
Score = 85 (35.0 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 239 PAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRH 298
PA P +T ++ I +VG +IG+ G+ I+ IR+ SG++IK+ + R
Sbjct: 378 PAAPVGGAMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERL 437
Query: 299 IQFGGSAQ--QVAL 310
+ G+ + Q+AL
Sbjct: 438 VTITGTQECNQMAL 451
Score = 74 (31.1 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 26/90 (28%), Positives = 42/90 (46%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
IR +I+ +A +IG G+N+ ++R SGA + ++ A E R++ +SG
Sbjct: 110 IRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSR-----GAVE--RILTVSGPQD 162
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNY 234
AV A I L N P S + + Y
Sbjct: 163 AVAKAFGLIIRTLN-NEPLDAASTAQSKTY 191
>UNIPROTKB|O57526 [details] [associations]
symbol:igf2bp3-b "Insulin-like growth factor 2 mRNA-binding
protein 3-B" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0051028 HSSP:Q9Y6M1
HOVERGEN:HBG052725 KO:K13197 EMBL:AF042353 EMBL:AF064633
EMBL:BC057700 RefSeq:NP_001079932.1 UniGene:Xl.240
ProteinModelPortal:O57526 SMR:O57526 GeneID:379623 KEGG:xla:379623
CTD:379623 Xenbase:XB-GENE-6255198 Uniprot:O57526
Length = 593
Score = 136 (52.9 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 71/330 (21%), Positives = 133/330 (40%)
Query: 18 EPEPRHDVSGKRRREDGEIEGSDP--KRRAKAQ-DVLFRIIVPSRQIGKVIGKEGHRIQK 74
+P+ +H + + G P R K Q +V R++VP++ +G +IGKEG I+
Sbjct: 170 QPQQQHPQGRRGFGQRGPARQGSPGAAARPKPQSEVPLRMLVPTQFVGAIIGKEGATIRN 229
Query: 75 IREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
I ++ E+ I I S A + I ++ K+
Sbjct: 230 ITKQTQSKIDIHRKENAGAAEKPITIHSTPEG-----CSAACKIIMEIMQKEAQDTKFTE 284
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
++ +++L + G LIG G+N++K+ + I I L L +
Sbjct: 285 EIP--------LKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTL----YNP 332
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAIR---PAQPFV 244
+R + + G + A E+ ++RE+ + +++ P N +A+ P+ +
Sbjct: 333 ERTITVKGSIETCAKAEEEVMKKIRESYENDIAAMNLQAHLIPGLNLNALGLFPPSSSGM 392
Query: 245 EP---------TSADYVTF---------EMLISESLVGGLIGRCGSNISRIRNESGAMIK 286
P TSA Y F + I VG +IG+ G +I ++ +GA IK
Sbjct: 393 PPPSAGVSSPTTSASYPPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIK 452
Query: 287 VYGGKG-EQKHRHIQFGGSAQQVALAKQRV 315
+ +G + K R + G + A+ R+
Sbjct: 453 IAPAEGPDAKLRMVIITGPPEAQFKAQGRI 482
>UNIPROTKB|O73932 [details] [associations]
symbol:igf2bp3-a "Insulin-like growth factor 2 mRNA-binding
protein 3-A" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0030529 GO:GO:0051028
EMBL:AF055923 EMBL:AF064634 EMBL:BC170196 EMBL:BC170224
EMBL:BC170477 EMBL:BC170479 RefSeq:NP_001081752.1 UniGene:Xl.319
HSSP:Q9Y6M1 ProteinModelPortal:O73932 SMR:O73932 IntAct:O73932
PRIDE:O73932 GeneID:394293 KEGG:xla:394293 CTD:394293
Xenbase:XB-GENE-864935 HOVERGEN:HBG052725 KO:K13197 Uniprot:O73932
Length = 594
Score = 136 (52.9 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 74/337 (21%), Positives = 137/337 (40%)
Query: 11 PTVSVVTEPEPRHDVSGKRRREDGEIEGSDP--KRRAKAQ-DVLFRIIVPSRQIGKVIGK 67
P+ + +P+ +H + + G P R K Q +V R++VP++ +G +IGK
Sbjct: 164 PSQQLQQQPQQQHPQGRRGFGQRGPARQGSPGAAARPKPQTEVPLRMLVPTQFVGAIIGK 223
Query: 68 EGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVVSDAENALQQIAALILKDD 126
EG I+ I ++ E+ I I S A + I ++ K+
Sbjct: 224 EGATIRNITKQTQSKIDIHRKENAGAAEKPITIHSTPEG-----CSAACKIIMEIMQKEA 278
Query: 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPL 186
++ +++L + G LIG G+N++K+ + I I L L
Sbjct: 279 QDTKFTEEIP--------LKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTL 330
Query: 187 CASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAIR-- 238
+ +R + + G + A EI ++RE+ + +++ P N +A+
Sbjct: 331 ----YNPERTITVKGSIEPCAKAEEEIMKKIRESYENDIAAMNLQAHLIPGLNLNALGLF 386
Query: 239 PAQ------PFV---EPTSA-DYVTF---------EMLISESLVGGLIGRCGSNISRIRN 279
P+ P V PTS+ Y F + I VG +IG+ G +I ++
Sbjct: 387 PSSSSGMPPPSVGVPSPTSSTSYPPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSR 446
Query: 280 ESGAMIKVYGGKG-EQKHRHIQFGGSAQQVALAKQRV 315
+GA IK+ +G + K R + G + A+ R+
Sbjct: 447 FAGASIKIAPAEGPDAKLRMVIITGPPEAQFKAQGRI 483
>SGD|S000000437 [details] [associations]
symbol:PBP2 "RNA binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 SGD:S000000437 GO:GO:0005634 GO:GO:0005737
GO:GO:0003729 EMBL:BK006936 GO:GO:0030529 RefSeq:NP_009792.3
GeneID:852533 KEGG:sce:YBR233W GeneTree:ENSGT00550000074311
KO:K00565 RefSeq:NP_009795.3 GeneID:852538 KEGG:sce:YBR236C
EMBL:Z36101 PIR:S46109 ProteinModelPortal:P38151 SMR:P38151
DIP:DIP-4947N IntAct:P38151 MINT:MINT-570424 STRING:P38151
PaxDb:P38151 EnsemblFungi:YBR233W CYGD:YBR233w eggNOG:NOG315872
HOGENOM:HOG000000730 OMA:GKHINSV OrthoDB:EOG4CRQ87 NextBio:971589
Genevestigator:P38151 GermOnline:YBR233W GO:GO:0010834
Uniprot:P38151
Length = 413
Score = 106 (42.4 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 50/202 (24%), Positives = 86/202 (42%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVV 108
DV R++ + ++G +G I +I+ E ER++ + +D V
Sbjct: 66 DVHLRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGTCDD--V 123
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
+ A + + A L ++ N E +++ I LLI GC+IG G + ++
Sbjct: 124 AKAYGMIVR-ALLEEHGNEDNGEDIEIS--------INLLIPHHLMGCIIGKRGSRLREI 174
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL----RENPPRQ 224
+ S A + +PNQL L +DR++ I+G A+ A I L E+P +
Sbjct: 175 EDLSAAKL-FASPNQLLL-----SNDRILTINGVPDAIHIATFYISQTLLNFQMESPQKN 228
Query: 225 V---ISISPA-YNYSAIRPAQP 242
V I P +N I +QP
Sbjct: 229 VKRSIYYQPTQFNSVLIDHSQP 250
Score = 70 (29.7 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 250 DYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGS--AQQ 307
++V E+ I E VG +IG+ G +I+ ++ +G I + R + G+ A Q
Sbjct: 329 NFVQQEIFIDEKFVGNVIGKDGKHINSVKESTGCSIIIQDPVEGSSERRLTIRGTFMASQ 388
Query: 308 VAL 310
A+
Sbjct: 389 AAI 391
>FB|FBgn0262735 [details] [associations]
symbol:Imp "IGF-II mRNA-binding protein" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0051124 "synaptic growth at
neuromuscular junction" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IEP]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
SMART:SM00322 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0051124 GO:GO:0007283 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 CTD:32009 UniGene:Dm.3773 GeneID:32009
KEGG:dme:Dmel_CG1691 FlyBase:FBgn0262735 GenomeRNAi:32009
NextBio:776342 RefSeq:NP_001036268.2 ProteinModelPortal:Q0KHU2
SMR:Q0KHU2 STRING:Q0KHU2 PRIDE:Q0KHU2 UCSC:CG1691-RI
OrthoDB:EOG4RBP0X PhylomeDB:Q0KHU2 Bgee:Q0KHU2 Uniprot:Q0KHU2
Length = 588
Score = 105 (42.0 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 39/193 (20%), Positives = 86/193 (44%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXX--RHEERVII 98
P R+A D RI+V S +G +IG++G I+ I ++ E+ + I
Sbjct: 87 PGRQA---DFPLRILVQSEMVGAIIGRQGSTIRTITQQSRARVDVHRKENVGSLEKSITI 143
Query: 99 ISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+ +N N +QQ A+ + + E S++ +++L + G +
Sbjct: 144 YGNPENCTNACKRILEVMQQ-EAISTNKGELSPECSEIC--------LKILAHNNLIGRI 194
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG SG I+++ + I + + N + ++ +R++ + G + + A +I +L
Sbjct: 195 IGKSGNTIKRIMQDTDTKITVSSINDI----NSFNLERIITVKGLIENMSRAENQISTKL 250
Query: 218 RENPPRQVISISP 230
R++ + +++P
Sbjct: 251 RQSYENDLQAMAP 263
Score = 75 (31.5 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+T E+L++ S VG +IG+ G N+ ++ +G++IK+
Sbjct: 404 LTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKL 439
Score = 59 (25.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
P V P T+ + I + VG +IG GS+I I S A +K+
Sbjct: 309 PPVFPNDLQETTY-LYIPNNAVGAIIGTRGSHIRSIMRFSNASLKI 353
>UNIPROTKB|Q5ZLP8 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T EMBL:AJ719686
IPI:IPI00594271 RefSeq:NP_001006359.1 UniGene:Gga.4039
ProteinModelPortal:Q5ZLP8 SMR:Q5ZLP8 PRIDE:Q5ZLP8
Ensembl:ENSGALT00000017840 GeneID:420617 KEGG:gga:420617 CTD:10643
InParanoid:Q5ZLP8 OMA:EAQDTKF NextBio:20823504 Uniprot:Q5ZLP8
Length = 584
Score = 135 (52.6 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 72/337 (21%), Positives = 132/337 (39%)
Query: 11 PTVSVVTEPEPRHDVSGKRRREDGEIEGSDPKR--RAKAQ-DVLFRIIVPSRQIGKVIGK 67
P +P +H + + G P R K Q DV R++VP++ +G +IGK
Sbjct: 155 PDEMAAQQPPQQHPQGRRGFGQRGPPRQGSPSATTRQKPQSDVPLRMLVPTQFVGAIIGK 214
Query: 68 EGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISSKDNDNVVSDAENALQQIAALILKDD 126
EG I+ I ++ E+ I I S A + I ++ K+
Sbjct: 215 EGATIRNITKQTQSKIDIHRKENAGAAEKPITIHSTPEG-----CSTACKIIMEIMQKEA 269
Query: 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPL 186
++ +++L + G LIG G+N++K+ + I I L L
Sbjct: 270 QDTKFTEEIP--------LKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTL 321
Query: 187 CASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAIR-- 238
+ +R + + G + A EI ++RE+ + +++ P N +A+
Sbjct: 322 ----YNPERTITVKGSIETCAKAEEEIMKKIRESYENDIAAMNLQAHLIPGLNLNALGLF 377
Query: 239 -PAQPFVEP---------TSADYVTF---------EMLISESLVGGLIGRCGSNISRIRN 279
P+ + P +A Y F + I VG +IG+ G +I ++
Sbjct: 378 PPSSSGIPPPAVSVASAAAAASYPPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSR 437
Query: 280 ESGAMIKVYGGKG-EQKHRHIQFGGSAQQVALAKQRV 315
+GA IK+ +G + K R + G + A+ R+
Sbjct: 438 FAGASIKIAPAEGPDAKLRMVIITGPPEAQFKAQGRI 474
>ZFIN|ZDB-GENE-060929-1258 [details] [associations]
symbol:igf2bp1 "insulin-like growth factor 2 mRNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322
SMART:SM00360 ZFIN:ZDB-GENE-060929-1258 GO:GO:0005634 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0070937
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T EMBL:BC124196 IPI:IPI00800578
RefSeq:NP_001070027.1 UniGene:Dr.81351 ProteinModelPortal:Q08CK7
SMR:Q08CK7 PRIDE:Q08CK7 GeneID:558182 KEGG:dre:558182
InParanoid:Q08CK7 NextBio:20882359 Uniprot:Q08CK7
Length = 598
Score = 135 (52.6 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 65/299 (21%), Positives = 122/299 (40%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIIS 100
P + A D+ R++VP++ +G +IGKEG I+ I ++ R E
Sbjct: 191 PSKHQHA-DIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVH----RKENA----G 241
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+ + + +IL+ + ++ +K A V +++L + G LIG
Sbjct: 242 AAEKPISIHSTPEGCSAACRMILEIMNQEAKDTKTA-DEVP---LKVLAHNNFVGRLIGK 297
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G+N++K+ + I I L L + +R + + G + A A EI ++RE
Sbjct: 298 EGRNLKKVEQDTDTKITISPLQDLTL----YNPERTITVKGSIEACCLAEQEIMKKVREA 353
Query: 221 PPRQVISIS------PAYNYSAIR-----------------PAQPFVEPTSADYVTFEML 257
+ +++ P N AI P P+ +++ T +
Sbjct: 354 YDNDIAAMNQQTHLIPGLNLGAIGLFPPSSAMPPPALGNSVPGPPYGPMGASEQETVHVY 413
Query: 258 ISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG-EQKHRHIQFGGSAQQVALAKQRV 315
I VG LIG+ G +I ++ +GA IK+ + + K R + G + A+ R+
Sbjct: 414 IPAQAVGALIGKKGQHIKQLSRFAGASIKIAPAEAPDSKMRMVIVTGPPEAQFKAQGRI 472
>UNIPROTKB|I3LRF8 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:FP312938
Ensembl:ENSSSCT00000030310 Uniprot:I3LRF8
Length = 265
Score = 128 (50.1 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 42/173 (24%), Positives = 83/173 (47%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER++ I+ +DA
Sbjct: 47 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNC--PERIVTITGP------TDA- 97
Query: 113 NALQQIAALILKDDDSN--SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
+ A + K ++ + S ++A T R++ G GC++G L+
Sbjct: 98 -IFKAFAMIAYKFEEVSRVSGLCEIAENAFGVWTQRVITLGVTVGCVLGQGPLCPPGLKG 156
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 STGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 203
Score = 110 (43.8 bits), Expect = 0.00094, P = 0.00094
Identities = 31/88 (35%), Positives = 45/88 (51%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 33 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 85
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRE 219
+R+V I+G A+ A I + E
Sbjct: 86 --ERIVTITGPTDAIFKAFAMIAYKFEE 111
>GENEDB_PFALCIPARUM|PFF0250w [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 83 (34.3 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 34/135 (25%), Positives = 62/135 (45%)
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
++ K NDN + D + + K+ N K V+ +R ++ +I
Sbjct: 340 MNMKKNDNYMDDNMSIDDNDNYSVPKE--KNLLLHKYGK-EVSPCVVRFVLDVETTAWII 396
Query: 159 GMSGQNIEKLRNSSGATIVIL-APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
G +G +I+++R+ +GA VI+ AP+ + + DR++ +SG NAL I Q+
Sbjct: 397 GKAGCHIKEIRSVTGAGAVIVDAPDNIE---NVKTCDRILTLSGSAENKFNALKLIVRQM 453
Query: 218 RE------NPPRQVI 226
E NP R ++
Sbjct: 454 EEREKNINNPMRMLV 468
Score = 76 (31.8 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK--- 312
ML+ LIGR GS I I +SG+ I+V K + + + GS + LA
Sbjct: 466 MLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKESENEKLVLITGSPEAKILASVLV 525
Query: 313 -QRVDEY 318
Q+++EY
Sbjct: 526 LQKLEEY 532
Score = 61 (26.5 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIRE 77
+++P+R IG VIGK G+ +++I +
Sbjct: 63 LLLPNRAIGYVIGKSGNNVREIEK 86
Score = 56 (24.8 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIRE 77
IIVP+R I +IG++G +I + E
Sbjct: 148 IIVPTRSIPIIIGQKGSKISSLSE 171
>UNIPROTKB|C6KSP9 [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 83 (34.3 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 34/135 (25%), Positives = 62/135 (45%)
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
++ K NDN + D + + K+ N K V+ +R ++ +I
Sbjct: 340 MNMKKNDNYMDDNMSIDDNDNYSVPKE--KNLLLHKYGK-EVSPCVVRFVLDVETTAWII 396
Query: 159 GMSGQNIEKLRNSSGATIVIL-APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
G +G +I+++R+ +GA VI+ AP+ + + DR++ +SG NAL I Q+
Sbjct: 397 GKAGCHIKEIRSVTGAGAVIVDAPDNIE---NVKTCDRILTLSGSAENKFNALKLIVRQM 453
Query: 218 RE------NPPRQVI 226
E NP R ++
Sbjct: 454 EEREKNINNPMRMLV 468
Score = 76 (31.8 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK--- 312
ML+ LIGR GS I I +SG+ I+V K + + + GS + LA
Sbjct: 466 MLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKESENEKLVLITGSPEAKILASVLV 525
Query: 313 -QRVDEY 318
Q+++EY
Sbjct: 526 LQKLEEY 532
Score = 61 (26.5 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIRE 77
+++P+R IG VIGK G+ +++I +
Sbjct: 63 LLLPNRAIGYVIGKSGNNVREIEK 86
Score = 56 (24.8 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIRE 77
IIVP+R I +IG++G +I + E
Sbjct: 148 IIVPTRSIPIIIGQKGSKISSLSE 171
>ZFIN|ZDB-GENE-080211-1 [details] [associations]
symbol:nova2 "neuro-oncological ventral antigen 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-080211-1 GO:GO:0003723 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 EMBL:AY597523
IPI:IPI01006797 UniGene:Dr.77006 OrthoDB:EOG4D26RK
ArrayExpress:Q53B45 Uniprot:Q53B45
Length = 473
Score = 121 (47.7 bits), Expect = 0.00016, P = 0.00016
Identities = 39/143 (27%), Positives = 68/143 (47%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++LI AG +IG GQ I +L+ +GATI + ++RV I G V
Sbjct: 65 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF----YPGTTERVCLIQGTVE 120
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
A+ N I ++RE P + P S ++P Q V P ++++ S G
Sbjct: 121 ALNNVHDFIAEKVREMP-QSAQKTEPV---SILQP-QTTVNPDRVKQA--KLVVPNSTAG 173
Query: 265 GLIGRCGSNISRIRNESGAMIKV 287
+IG+ G+ + + +SGA +++
Sbjct: 174 LIIGKGGATVKAVMEQSGAWVQL 196
Score = 110 (43.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 50/230 (21%), Positives = 95/230 (41%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE---ERVIIISSKDN- 104
+ ++++PS G +IGK G I ++++E + ERV +I
Sbjct: 62 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEA 121
Query: 105 -DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+NV ++++ K + + + +L++ S AG +IG G
Sbjct: 122 LNNVHDFIAEKVREMPQSAQKTEPVSILQPQTTVNPDRVKQAKLVVPNSTAGLIIGKGGA 181
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++ + SGA + + +Q P + E RVV ISG+ P VEI Q + P+
Sbjct: 182 TVKAVMEQSGAWVQL---SQKPDGINLQE--RVVTISGE-PEQNRKAVEIIVQKIQEDPQ 235
Query: 224 QVISISPAY-NYSA-IRPAQPFVEP--TSADYVTFEMLISESLVGGLIGR 269
++ +Y N S + + P P SA+ + + + L+G+
Sbjct: 236 SSSCLNISYSNISGPVANSNPTGSPYANSAEVMPAAAAAAAATASSLLGQ 285
Score = 63 (27.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE----QKHRHIQFGGS 304
E+ + E+LVG ++G+ G + + +GA I++ KGE ++R + GS
Sbjct: 420 EIAVPENLVGAILGKGGKTLVEYQELTGARIQI-SKKGEFVPGTRNRKVTITGS 472
>ZFIN|ZDB-GENE-000308-1 [details] [associations]
symbol:igf2bp3 "insulin-like growth factor 2 mRNA
binding protein 3" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-000308-1
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF
EMBL:AF161270 EMBL:BC045873 IPI:IPI00497892 RefSeq:NP_571566.1
UniGene:Dr.8280 ProteinModelPortal:Q9PW80 SMR:Q9PW80 PRIDE:Q9PW80
Ensembl:ENSDART00000010140 GeneID:30967 KEGG:dre:30967
InParanoid:Q9PW80 NextBio:20807119 ArrayExpress:Q9PW80 Bgee:Q9PW80
Uniprot:Q9PW80
Length = 582
Score = 131 (51.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 70/303 (23%), Positives = 127/303 (41%)
Query: 44 RAKAQ-DVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE-ERVIIISS 101
R K Q DV R++VP++ +G +IGKEG I+ I ++ E+ I + S
Sbjct: 188 RPKLQSDVPLRLLVPTQFVGAIIGKEGATIRNITKQTHSKIDIHRKENAGAAEKPITVHS 247
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+A + I ++ K+ ++ +++L + G LIG
Sbjct: 248 TPEG-----CSSACRNIMEIMQKEAIDTKITEEIP--------LKILAHNNFVGRLIGKE 294
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I L L + +R + + G + A A EI ++RE+
Sbjct: 295 GRNLKKIEQDTDTKITISPLQDLTL----YNPERTITVKGTLDACAKAEEEIMKKVRESY 350
Query: 222 PRQVISIS------PAYNYSAIR--P--AQPFVEPT---------SADYVTF-EMLISES 261
V ++ P N +A+ P A + P+ A Y +F + SE+
Sbjct: 351 ENDVAAMHLQSNLIPGLNLNALGLFPGAASGGISPSVVSGPPPGAQAGYQSFGAQMESET 410
Query: 262 L--------VGGLIGRCGSNISRIRNESGAMIKVYGGKG-EQKHRHIQFGGSAQQVALAK 312
+ VG +IG+ G +I ++ +GA IK+ G + K R + G + A+
Sbjct: 411 VHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPADGIDAKQRMVIISGPPEAQFKAQ 470
Query: 313 QRV 315
R+
Sbjct: 471 GRI 473
>WB|WBGene00016489 [details] [associations]
symbol:C36E6.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096
Pfam:PF09005 GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080802
GeneID:181773 KEGG:cel:CELE_C36E6.1 CTD:181773 HOGENOM:HOG000018892
RefSeq:NP_510825.1 ProteinModelPortal:Q9BLA0 SMR:Q9BLA0
STRING:Q9BLA0 PaxDb:Q9BLA0 PRIDE:Q9BLA0 EnsemblMetazoa:C36E6.1b
UCSC:C36E6.1a WormBase:C36E6.1b InParanoid:Q9BLA0 OMA:IQLIQEN
NextBio:915282 ArrayExpress:Q9BLA0 Uniprot:Q9BLA0
Length = 641
Score = 103 (41.3 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 31/136 (22%), Positives = 62/136 (45%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVS 109
+ I +P+ + G +IGK G +++K+R + + + D V
Sbjct: 157 ITIEIPIPANKCGAIIGKGGEQMRKLRSWTNCNVQLLQDNNIADTVKPLKITGDPKQV-- 214
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
E +A ++ +DD+ + A G VA ++++ + G ++G+ G+NI+KL
Sbjct: 215 --EQCRLLVADILACNDDTPASAMMAGNGPVATMSLQVKVPRCTVGAIMGLQGKNIKKLS 272
Query: 170 NSSGATIVILAPNQLP 185
+ +G I L P+ P
Sbjct: 273 DETGTKIQFL-PDDDP 287
Score = 73 (30.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 24/72 (33%), Positives = 32/72 (44%)
Query: 245 EPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQK-HRHIQFGG 303
E +A V F M+I S G +IGR G I +I ESGA ++ + G
Sbjct: 319 EAANAPVVLFYMVIPASKCGLVIGRGGETIKQINQESGAHCELSRDPNTNPIEKTFVIRG 378
Query: 304 SAQQVALAKQRV 315
S QV AK +
Sbjct: 379 SEAQVEHAKHLI 390
>ZFIN|ZDB-GENE-030131-4357 [details] [associations]
symbol:khsrp "KH-type splicing regulatory protein"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-030131-4357 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:AL929150 IPI:IPI00482681
Ensembl:ENSDART00000038330 ArrayExpress:F1QXP8 Bgee:F1QXP8
Uniprot:F1QXP8
Length = 666
Score = 100 (40.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 36/164 (21%), Positives = 71/164 (43%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I KI+++ +R + I+ + A+ L
Sbjct: 113 VPDGMVGLIIGRGGEQINKIQQDSGCKVQIAPDSGGLPDRSVSITG--GPEAIQKAKMML 170
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGAT 175
I + S E++ +GH+ ++I +AG +IG G+ I++L+ +G
Sbjct: 171 DDIVSRGRGTPPSFHESTN-GSGHMQ----EMVIPAGKAGLIIGKGGETIKQLQERAGVK 225
Query: 176 IVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++++ + D+ ++I GD V A + LRE
Sbjct: 226 MILIQD-----ASQGPNMDKPLRIIGDPYKVQQAREMVQEILRE 264
Score = 76 (31.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMI--KVYGGKGEQKHRHIQFGGSAQQVALAK 312
E+ + VG +IGR G I +I+N++G I K G G K HI G + A
Sbjct: 297 EVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKPDDGTGPDKIAHIM--GPPDRCEHAA 354
Query: 313 QRVDEYIYSQLIQQAG 328
++E + S +++ G
Sbjct: 355 SIINELLQSIRVREEG 370
>WB|WBGene00003978 [details] [associations]
symbol:pes-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:FO081827 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 RefSeq:NP_497351.3 ProteinModelPortal:Q95Y67
SMR:Q95Y67 PaxDb:Q95Y67 EnsemblMetazoa:Y119D3B.17 GeneID:175288
KEGG:cel:CELE_Y119D3B.17 UCSC:Y119D3B.17 CTD:175288
WormBase:Y119D3B.17 HOGENOM:HOG000020666 InParanoid:Q95Y67
OMA:PHSTERA NextBio:887534 Uniprot:Q95Y67
Length = 432
Score = 128 (50.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 35/125 (28%), Positives = 62/125 (49%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+++ +Q G LIG G I+ +R ++GA+I + A LP H ++R V +SG
Sbjct: 154 TMRVIVPATQCGSLIGKGGSKIKDIREATGASIQV-ASEMLP-----HSTERAVTLSGTA 207
Query: 204 PAVLNALVEIGNQLRENPPR-QVISI--SPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
A+ + ++ L E PP+ I+ P +N AI + + + L +
Sbjct: 208 DAINLCMTQVCQILLEAPPKGSTITYRPKPTFNPLAIATSAATIAAQQQQAQAQQQLAAA 267
Query: 261 SLVGG 265
+L+GG
Sbjct: 268 ALMGG 272
Score = 117 (46.2 bits), Expect = 0.00038, P = 0.00038
Identities = 36/133 (27%), Positives = 66/133 (49%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +I+KIREE ER++ I+ V+ A
Sbjct: 75 RLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSC--PERIVTITG--TLGVIGKAF 130
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
N + ++D + V + T+R+++ +Q G LIG G I+ +R ++
Sbjct: 131 NMVCNKF-----EEDMLLLPNSVPKPPI---TMRVIVPATQCGSLIGKGGSKIKDIREAT 182
Query: 173 GATIVILAPNQLP 185
GA+I + A LP
Sbjct: 183 GASIQV-ASEMLP 194
Score = 94 (38.1 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G I+K+R SGA I I + P +R+V I+G +
Sbjct: 73 TIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINI-SDGSCP--------ERIVTITGTL 123
Query: 204 PAVLNALVEIGNQLREN 220
+ A + N+ E+
Sbjct: 124 GVIGKAFNMVCNKFEED 140
Score = 74 (31.1 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQVAL 310
+T +++ + G LIG+ GS I IR +GA I+V R + G+A + L
Sbjct: 153 ITMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSGTADAINL 212
Query: 311 AKQRV 315
+V
Sbjct: 213 CMTQV 217
>UNIPROTKB|F8W1G6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021049
Ensembl:ENST00000546652 ArrayExpress:F8W1G6 Bgee:F8W1G6
Uniprot:F8W1G6
Length = 202
Score = 120 (47.3 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 35/120 (29%), Positives = 62/120 (51%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE ER+I ++ N
Sbjct: 14 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC--PERIITLAGPTN-------- 63
Query: 113 NALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++R
Sbjct: 64 -AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIR 121
Score = 107 (42.7 bits), Expect = 0.00098, P = 0.00098
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 12 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 62
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 63 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 93
>TAIR|locus:2140513 [details] [associations]
symbol:AT4G10070 "AT4G10070" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0009688 "abscisic acid biosynthetic process"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002687 GO:GO:0003723
UniGene:At.33655 IPI:IPI01020077 RefSeq:NP_192745.2
ProteinModelPortal:F4JLJ3 SMR:F4JLJ3 EnsemblPlants:AT4G10070.1
GeneID:826598 KEGG:ath:AT4G10070 OMA:PSTHAIG ArrayExpress:F4JLJ3
Uniprot:F4JLJ3
Length = 725
Score = 130 (50.8 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 55/221 (24%), Positives = 95/221 (42%)
Query: 30 RREDGEIEGSDPKRRAKA-QDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXX 88
+ E+ E++G ++ Q RI VPS ++G +IGK G I+ ++
Sbjct: 155 KEENKEVDGEKSQKEVDGTQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRD 214
Query: 89 XXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI--- 145
+ + V+ E+A + I+A+I + + S A VA GH + + I
Sbjct: 215 SEADPSSAL--RPVEIIGSVACIESAEKLISAVIAEAEAGGSPAL-VARGHPSTHAIGIP 271
Query: 146 ---RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE-SDRVVQISG 201
+ + + G +IG G+ I+ ++ SGA ++ P A +R V+ISG
Sbjct: 272 EQIEIKVPNDKVGLIIGRGGETIKNMQTRSGARTQLI-----PQHAEGDGLKERTVRISG 326
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQP 242
D + A I + + +N + S S YN A RP P
Sbjct: 327 DKMQIDIATDMIKDVMNQNA--RPSSYSGGYNQPAYRPQGP 365
Score = 42 (19.8 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 220 NPPRQVISISPAYNYSAIRPAQPFVEPTSA 249
N Q + PAY +++PA + T A
Sbjct: 611 NNGTQTPATGPAYQQQSVQPASSTYDQTGA 640
>CGD|CAL0001510 [details] [associations]
symbol:PBP2 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0010834 "telomere maintenance via
telomere shortening" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 CGD:CAL0001510 GO:GO:0003723
EMBL:AACQ01000046 EMBL:AACQ01000047 eggNOG:NOG315872
RefSeq:XP_718039.1 RefSeq:XP_718106.1 ProteinModelPortal:Q5A8H8
STRING:Q5A8H8 GeneID:3640267 GeneID:3640340 KEGG:cal:CaO19.13193
KEGG:cal:CaO19.5771 HOGENOM:HOG000247928 Uniprot:Q5A8H8
Length = 529
Score = 104 (41.7 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 50/226 (22%), Positives = 93/226 (41%)
Query: 20 EPRHDVSGKRRRED---GEIEGSDPKRRAKAQD----VLFRIIVPSRQIGKVIGKEGHRI 72
EP + S +D G S P + +D + R+ P ++ ++G++G I
Sbjct: 123 EPAYAPSESDHADDQNTGSSSSSKPVSNHRDRDDPTFIQLRMYCPVKEASTIVGRKGETI 182
Query: 73 QKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEA 132
+RE+ ER++ + +NV A I +IL++ + E
Sbjct: 183 NHLREKANVRITVSENLKGVPERIVAVKGPA-ENVA----RAFGLITRVILEEPED--EP 235
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
+ + + ++LLI G +IG G ++ +S A + A N LP +
Sbjct: 236 ASINSQQY---NLKLLIPHPMIGFIIGKQGLKFREIEENSAAKLKA-AENALP-----YS 286
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPP----RQVISISPAYNY 234
+DRV+ + G A+ A+ I + E+ +V+ +PA NY
Sbjct: 287 TDRVLSVMGVGDAIHIAVYYIAQVMLEHKEVLKKHKVVLYNPA-NY 331
Score = 67 (28.6 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 22/89 (24%), Positives = 41/89 (46%)
Query: 208 NALVEIGNQLRENPPRQVISISPAYNYSAIRPA--QPFVEPTSADYVTFEMLISESLVGG 265
NA+ +G Q N P Q + + + + P ++ D ++ ++ S +G
Sbjct: 398 NAVSPVGMQPSVNIPPQN-QFTDEFGNTIVGEVITTPPIQ-AGQDKYNQDVFVANSSIGS 455
Query: 266 LIGRCGSNISRIRNESGAM-IKVYGGKGE 293
+IG+ G+NI IR S +K+ KG+
Sbjct: 456 VIGKRGNNIKHIRETSACTYVKIEPDKGQ 484
>UNIPROTKB|E1B8C6 [details] [associations]
symbol:E1B8C6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:DAAA02008155
IPI:IPI00701183 Ensembl:ENSBTAT00000038517 OMA:YLINARE
Uniprot:E1B8C6
Length = 116
Score = 104 (41.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I +L+G +IGR G+NI+ IR S A IK+ R + GSA ++LA+
Sbjct: 41 THELTIPNNLIGCIIGRQGANINEIRQMSRAQIKIANPVEGSSGRQVTITGSAASISLAQ 100
Query: 313 QRVDEYIYSQ 322
++ + S+
Sbjct: 101 YLINARLSSE 110
>RGD|1591989 [details] [associations]
symbol:LOC367191 "similar to Poly(rC)-binding protein 2
(Alpha-CP2) (Putative heterogeneous nuclear ribonucleoprotein X)
(hnRNP X) (CTBP) (CBP)" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591989 GO:GO:0003723 IPI:IPI00555167
Ensembl:ENSRNOT00000037460 OMA:KARITIS Uniprot:D3ZTH3
Length = 107
Score = 104 (41.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 32/96 (33%), Positives = 50/96 (52%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CPK-----RIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAARRP 96
>UNIPROTKB|G3X7R5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:DAAA02052552 EMBL:DAAA02052553
Ensembl:ENSBTAT00000044049 Uniprot:G3X7R5
Length = 507
Score = 105 (42.0 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 35/129 (27%), Positives = 64/129 (49%)
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
AN +++++ S AG +IG G ++ + SGA + + +Q P + E RVV +SG
Sbjct: 171 ANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQE--RVVTVSG 225
Query: 202 DVPAVLNALVEIGNQLRENPPR-QVISISPAYNYSAIRPAQPFVEPTSADYV-TFEMLIS 259
+ A+ I +++E+P ++IS Y+ + PT + Y T E+L +
Sbjct: 226 EPEQNRKAVELIIQKIQEDPQSGSCLNIS----YANVTGPVANSNPTGSPYANTAEVLPT 281
Query: 260 ESLVGGLIG 268
+ GL+G
Sbjct: 282 AAAAAGLLG 290
Score = 64 (27.6 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 28 KRRREDGEIEGSDPKRRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
++R + E KR +D ++++PS G +IGK G I ++++E
Sbjct: 26 RKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKE 78
>UNIPROTKB|J9NXS6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048 CTD:4857
KO:K14944 OMA:FRQNNTA EMBL:AAEX03005630 EMBL:AAEX03005631
RefSeq:XP_547754.1 Ensembl:ENSCAFT00000044255 GeneID:490632
KEGG:cfa:490632 Uniprot:J9NXS6
Length = 507
Score = 105 (42.0 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 35/129 (27%), Positives = 64/129 (49%)
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
AN +++++ S AG +IG G ++ + SGA + + +Q P + E RVV +SG
Sbjct: 171 ANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQE--RVVTVSG 225
Query: 202 DVPAVLNALVEIGNQLRENPPR-QVISISPAYNYSAIRPAQPFVEPTSADYV-TFEMLIS 259
+ A+ I +++E+P ++IS Y+ + PT + Y T E+L +
Sbjct: 226 EPEQNRKAVELIIQKIQEDPQSGSCLNIS----YANVTGPVANSNPTGSPYANTAEVLPT 281
Query: 260 ESLVGGLIG 268
+ GL+G
Sbjct: 282 AAAAAGLLG 290
Score = 64 (27.6 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 28 KRRREDGEIEGSDPKRRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
++R + E KR +D ++++PS G +IGK G I ++++E
Sbjct: 26 RKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKE 78
>MGI|MGI:104297 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1"
species:10090 "Mus musculus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC]
[GO:0007399 "nervous system development" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:104297 GO:GO:0005634 GO:GO:0003729
GO:GO:0000398 GeneTree:ENSGT00650000093048 CTD:4857
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944
OMA:FRQNNTA ChiTaRS:NOVA1 EMBL:AC108802 EMBL:AC156636 EMBL:AF232828
EMBL:AK047565 IPI:IPI00659424 RefSeq:NP_067336.1 UniGene:Mm.247195
ProteinModelPortal:Q9JKN6 SMR:Q9JKN6 PhosphoSite:Q9JKN6
PaxDb:Q9JKN6 PRIDE:Q9JKN6 Ensembl:ENSMUST00000021438 GeneID:664883
KEGG:mmu:664883 UCSC:uc007nmd.2 InParanoid:Q9JKN6 NextBio:426120
Bgee:Q9JKN6 CleanEx:MM_NOVA1 Genevestigator:Q9JKN6
GermOnline:ENSMUSG00000021047 Uniprot:Q9JKN6
Length = 507
Score = 105 (42.0 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 35/129 (27%), Positives = 64/129 (49%)
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
AN +++++ S AG +IG G ++ + SGA + + +Q P + E RVV +SG
Sbjct: 171 ANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQE--RVVTVSG 225
Query: 202 DVPAVLNALVEIGNQLRENPPR-QVISISPAYNYSAIRPAQPFVEPTSADYV-TFEMLIS 259
+ A+ I +++E+P ++IS Y+ + PT + Y T E+L +
Sbjct: 226 EPEQNRKAVELIIQKIQEDPQSGSCLNIS----YANVTGPVANSNPTGSPYANTAEVLPT 281
Query: 260 ESLVGGLIG 268
+ GL+G
Sbjct: 282 AAAAAGLLG 290
Score = 64 (27.6 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 28 KRRREDGEIEGSDPKRRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
++R + E KR +D ++++PS G +IGK G I ++++E
Sbjct: 26 RKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKE 78
>UNIPROTKB|D4AAF8 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003729 GO:GO:0000398 EMBL:CH473947
GeneTree:ENSGT00650000093048 CTD:4857 KO:K14944 UniGene:Rn.232418
IPI:IPI00556974 RefSeq:XP_001075031.1 RefSeq:XP_234098.2 SMR:D4AAF8
Ensembl:ENSRNOT00000050372 GeneID:298992 KEGG:rno:298992
NextBio:644625 Uniprot:D4AAF8
Length = 507
Score = 105 (42.0 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 35/129 (27%), Positives = 64/129 (49%)
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
AN +++++ S AG +IG G ++ + SGA + + +Q P + E RVV +SG
Sbjct: 171 ANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQE--RVVTVSG 225
Query: 202 DVPAVLNALVEIGNQLRENPPR-QVISISPAYNYSAIRPAQPFVEPTSADYV-TFEMLIS 259
+ A+ I +++E+P ++IS Y+ + PT + Y T E+L +
Sbjct: 226 EPEQNRKAVELIIQKIQEDPQSGSCLNIS----YANVTGPVANSNPTGSPYANTAEVLPT 281
Query: 260 ESLVGGLIG 268
+ GL+G
Sbjct: 282 AAAAAGLLG 290
Score = 64 (27.6 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 28 KRRREDGEIEGSDPKRRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
++R + E KR +D ++++PS G +IGK G I ++++E
Sbjct: 26 RKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKE 78
>ZFIN|ZDB-GENE-041121-12 [details] [associations]
symbol:zgc:101598 "zgc:101598" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-041121-12 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 OrthoDB:EOG4X97H1 EMBL:BC085379
IPI:IPI00487369 RefSeq:NP_001007777.1 UniGene:Dr.76973
ProteinModelPortal:Q5RKQ3 SMR:Q5RKQ3 STRING:Q5RKQ3 GeneID:493616
KEGG:dre:493616 InParanoid:Q5RKQ3 NextBio:20865427
ArrayExpress:Q5RKQ3 Uniprot:Q5RKQ3
Length = 572
Score = 127 (49.8 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 60/273 (21%), Positives = 112/273 (41%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRH--EERVIIISSKDNDNVVSDA 111
I++P+ ++G VIGK G I++++E ++ + IS D V
Sbjct: 173 ILIPASKVGLVIGKGGDTIKQLQERTGVKMIMIQDDPMPTGSDKPLRISG-DPYKV---- 227
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+ A + + +I + D + + + G ++I + + G +IG +G+ I+K++N
Sbjct: 228 QQARELVVEIIREKDQGDFRSGRSDFGSRLGSSIDVAVPRFAVGIVIGRNGEMIKKIQND 287
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS--IS 229
+G I + + DRV Q+ G +A+ I ++ R +
Sbjct: 288 AGVRIQFKPDDGI-------SPDRVAQVMGQPERCQHAVHLINELVQTAQERDGFGGPLG 340
Query: 230 PAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
P R P VT+ I G +IG+ G I I +SGA +++
Sbjct: 341 PRGRGRG-RGDWNIGTPGGLQEVTYT--IPADKCGLVIGKGGETIKNINQQSGAHVELQR 397
Query: 290 G---KGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
+ R GS QQ+ +A+Q +D+ I
Sbjct: 398 NPPPNTDPNVRTFSIRGSPQQMEMARQLIDDKI 430
>UNIPROTKB|J3KQU3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 Ensembl:ENST00000449198 Uniprot:J3KQU3
Length = 277
Score = 104 (41.7 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 35/129 (27%), Positives = 64/129 (49%)
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
AN +++++ S AG +IG G ++ + SGA + + +Q P + E RVV +SG
Sbjct: 130 ANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPDGINLQE--RVVTVSG 184
Query: 202 DVPAVLNALVEIGNQLRENPPR-QVISISPAYNYSAIRPAQPFVEPTSADYV-TFEMLIS 259
+ A+ I +++E+P ++IS Y+ + PT + Y T E+L +
Sbjct: 185 EPEQNRKAVELIIQKIQEDPQSGSCLNIS----YANVTGPVANSNPTGSPYANTAEVLPT 240
Query: 260 ESLVGGLIG 268
+ GL+G
Sbjct: 241 AAAAAGLLG 249
Score = 56 (24.8 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREE 78
++++PS G +IGK G I ++++E
Sbjct: 12 KVLIPSYAAGSIIGKGGQTIVQLQKE 37
>UNIPROTKB|P51513 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0007268 "synaptic
transmission" evidence=TAS] [GO:0007626 "locomotory behavior"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0008380 GO:GO:0007268
GO:GO:0003729 GO:GO:0007626 GO:GO:0003723 EMBL:CH471078
GO:GO:0000398 EMBL:U04840 EMBL:AK289639 EMBL:AK291022 EMBL:BC075038
EMBL:BC075039 EMBL:Z70771 IPI:IPI00019244 IPI:IPI00221187
IPI:IPI00221188 IPI:IPI00816603 PIR:I38489 RefSeq:NP_002506.2
RefSeq:NP_006480.2 RefSeq:NP_006482.1 UniGene:Hs.31588 PDB:1DT4
PDB:2ANN PDB:2ANR PDBsum:1DT4 PDBsum:2ANN PDBsum:2ANR
ProteinModelPortal:P51513 SMR:P51513 IntAct:P51513
MINT:MINT-1381951 STRING:P51513 PhosphoSite:P51513 DMDM:1709303
PRIDE:P51513 Ensembl:ENST00000344429 Ensembl:ENST00000539517
GeneID:4857 KEGG:hsa:4857 UCSC:uc001wpy.3 UCSC:uc001wqa.3
UCSC:uc001wqb.3 CTD:4857 GeneCards:GC14M026915 H-InvDB:HIX0037755
HGNC:HGNC:7886 HPA:HPA004155 MIM:602157 neXtProt:NX_P51513
PharmGKB:PA31688 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 InParanoid:P51513 KO:K14944 OMA:FRQNNTA
ChiTaRS:NOVA1 EvolutionaryTrace:P51513 GenomeRNAi:4857
NextBio:18710 ArrayExpress:P51513 Bgee:P51513 CleanEx:HS_NOVA1
Genevestigator:P51513 GermOnline:ENSG00000139910 Uniprot:P51513
Length = 510
Score = 104 (41.7 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 35/129 (27%), Positives = 64/129 (49%)
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
AN +++++ S AG +IG G ++ + SGA + + +Q P + E RVV +SG
Sbjct: 174 ANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPDGINLQE--RVVTVSG 228
Query: 202 DVPAVLNALVEIGNQLRENPPR-QVISISPAYNYSAIRPAQPFVEPTSADYV-TFEMLIS 259
+ A+ I +++E+P ++IS Y+ + PT + Y T E+L +
Sbjct: 229 EPEQNRKAVELIIQKIQEDPQSGSCLNIS----YANVTGPVANSNPTGSPYANTAEVLPT 284
Query: 260 ESLVGGLIG 268
+ GL+G
Sbjct: 285 AAAAAGLLG 293
Score = 64 (27.6 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 28 KRRREDGEIEGSDPKRRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
++R + E KR +D ++++PS G +IGK G I ++++E
Sbjct: 26 RKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKE 78
>WB|WBGene00007534 [details] [associations]
symbol:C12D8.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016246 "RNA
interference" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0016246
GO:GO:0003723 EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 126 (49.4 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 61/275 (22%), Positives = 115/275 (41%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
+P +G VIG+ G IQ I+ + V +++ + + + V A++ +
Sbjct: 76 IPESAVGIVIGRGGSEIQGIQAKAGCRVQMSPDADP-SSGVRMVTLEGSRSNVETAKHLI 134
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAANT-IRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
++ A S+ + G A T I + I ++ G +IG SG I +L+ SG
Sbjct: 135 NEVVA--------RSQNPRPQYGFPRAQTTIDIAIPPNRCGLIIGKSGDTIRQLQEKSGC 186
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNY 234
++++ NQ S + + ++I+GD P +E+ QL ++++ N
Sbjct: 187 KMILVQDNQ-----SVSDQSKPLRITGD-PQK----IELAKQL----VAEILNSGGDGNG 232
Query: 235 SAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQ 294
+ A E+++ S VG +IG+ G I R+ E+G I+
Sbjct: 233 GSGLQMHHAGGGGGAS-ARGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPS 291
Query: 295 K-HRHIQFGGSAQQVALAKQRVDEYIYSQLIQQAG 328
R G+ Q+ A +R+ E + +QQ G
Sbjct: 292 TPERCAVIMGTRDQIYRATERITELVKKSTMQQGG 326
>UNIPROTKB|Q17936 [details] [associations]
symbol:C12D8.1 "Protein C12D8.1, isoform b" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0016246 GO:GO:0003723
EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 126 (49.4 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 61/275 (22%), Positives = 115/275 (41%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
+P +G VIG+ G IQ I+ + V +++ + + + V A++ +
Sbjct: 76 IPESAVGIVIGRGGSEIQGIQAKAGCRVQMSPDADP-SSGVRMVTLEGSRSNVETAKHLI 134
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAANT-IRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
++ A S+ + G A T I + I ++ G +IG SG I +L+ SG
Sbjct: 135 NEVVA--------RSQNPRPQYGFPRAQTTIDIAIPPNRCGLIIGKSGDTIRQLQEKSGC 186
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNY 234
++++ NQ S + + ++I+GD P +E+ QL ++++ N
Sbjct: 187 KMILVQDNQ-----SVSDQSKPLRITGD-PQK----IELAKQL----VAEILNSGGDGNG 232
Query: 235 SAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQ 294
+ A E+++ S VG +IG+ G I R+ E+G I+
Sbjct: 233 GSGLQMHHAGGGGGAS-ARGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPS 291
Query: 295 K-HRHIQFGGSAQQVALAKQRVDEYIYSQLIQQAG 328
R G+ Q+ A +R+ E + +QQ G
Sbjct: 292 TPERCAVIMGTRDQIYRATERITELVKKSTMQQGG 326
>UNIPROTKB|J9P8J3 [details] [associations]
symbol:J9P8J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000047704 Uniprot:J9P8J3
Length = 399
Score = 89 (36.4 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
+T ++ I + L G +IG+ G I +IR+ESGA IK+ + R I G+ Q+ A
Sbjct: 324 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 383
Query: 312 K 312
+
Sbjct: 384 Q 384
Score = 76 (31.8 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + P+ +S E R++ IS D+
Sbjct: 19 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV--PD-----SSGPE--RILSISADIE 69
Query: 205 AVLNALVEIGNQLRE 219
+ L +I L E
Sbjct: 70 TIGEILKKIIPTLEE 84
Score = 60 (26.2 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 43 RRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIIS 100
+R++ D V RI++ S+ G VIGK G I+ +R + ER++ IS
Sbjct: 8 KRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSIS 65
Query: 101 S 101
+
Sbjct: 66 A 66
Score = 46 (21.3 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENP 221
H +DRVV I G V+ + I + + E+P
Sbjct: 123 HSTDRVVLIGGKPDRVVECIKIILDLISESP 153
>UNIPROTKB|F6Y140 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
OMA:QASGNCH GeneTree:ENSGT00650000093048 EMBL:AAEX03012495
Ensembl:ENSCAFT00000029641 Uniprot:F6Y140
Length = 602
Score = 92 (37.4 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 39/170 (22%), Positives = 75/170 (44%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I KI+++ ER + ++ A ++
Sbjct: 7 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTG---------APESV 57
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAAN-----TIR-LLIAGSQAGCLIGMSGQNIEKLR 169
Q+ A ++L D S H AN T++ ++I +AG +IG G+ I++L+
Sbjct: 58 QK-AKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQ 116
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+G ++++ + D+ ++I GD V A + + LRE
Sbjct: 117 ERAGVKMILIQDG-----SQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 161
Score = 77 (32.2 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 264 GGLIGRCGSNISRIRNESGAMIKV---YGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIY 320
G +IGR G N+ I ++GA +++ G+ + GS QQ+ AKQ ++E I
Sbjct: 293 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 352
Query: 321 SQL 323
L
Sbjct: 353 GPL 355
Score = 68 (29.0 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 263 VGGLIGRCGSNISRIRNESGAMI--KVYGGKGEQKHRHI 299
VG +IGR G I +I+N++G I K G G +K HI
Sbjct: 190 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHI 228
>SGD|S000000128 [details] [associations]
symbol:HEK2 "RNA binding protein involved in asymmetric
localization of ASH1 mRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0008298 "intracellular mRNA localization" evidence=IMP;IPI]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0007004 "telomere maintenance via
telomerase" evidence=IMP;IPI] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=IDA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IGI;IMP] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 SGD:S000000128 GO:GO:0006417
GO:GO:0003729 GO:GO:0016568 EMBL:BK006936 GO:GO:0048255 EMBL:X77291
GO:GO:0000932 GO:GO:0008298 GO:GO:0051028 GO:GO:0000784
GO:GO:0007004 EMBL:Z35793 EMBL:AY692814 PIR:S45766
RefSeq:NP_009521.1 ProteinModelPortal:P38199 SMR:P38199
DIP:DIP-3934N IntAct:P38199 MINT:MINT-506819 STRING:P38199
PaxDb:P38199 PeptideAtlas:P38199 EnsemblFungi:YBL032W GeneID:852248
KEGG:sce:YBL032W CYGD:YBL032w eggNOG:NOG294694 OMA:NSHISSI
OrthoDB:EOG4Z65XM NextBio:970814 Genevestigator:P38199
GermOnline:YBL032W Uniprot:P38199
Length = 381
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 39/135 (28%), Positives = 67/135 (49%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RL++A S +IG +G I+ L N G IV + + LP AS +R+++I G
Sbjct: 159 VRLIVANSHISSIIGKAGATIKSLINKHGVKIVA-SKDFLP--AS---DERIIEIQGFPG 212
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
++ N L+EI + + + + + + +P P+++ E+ I E VG
Sbjct: 213 SITNVLIEISEIILSDVDVRFSTERSYFPHLKKSSGEP-TSPSTSSNTRIELKIPELYVG 271
Query: 265 GLIGRCGSNISRIRN 279
+IGR G N RI+N
Sbjct: 272 AIIGR-GMN--RIKN 283
>UNIPROTKB|Q8UVD9 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9031 "Gallus gallus" [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0005737 GO:GO:0003730
GO:GO:0008298 GO:GO:0051028 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 EMBL:AF461020 IPI:IPI00589044
RefSeq:NP_989608.1 UniGene:Gga.94 ProteinModelPortal:Q8UVD9
SMR:Q8UVD9 PRIDE:Q8UVD9 GeneID:374140 KEGG:gga:374140 CTD:8570
NextBio:20813655 Uniprot:Q8UVD9
Length = 769
Score = 125 (49.1 bits), Expect = 0.00011, P = 0.00011
Identities = 63/276 (22%), Positives = 109/276 (39%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDND-NVVSDAE 112
I++P+ + G VIGK G I++++E ++ ++ D ++ D
Sbjct: 301 IMIPAGKAGLVIGKGGETIKQLQERAGVKMIFIQDGSQN-------TNVDKPLRIIGDPY 353
Query: 113 NALQ--QIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q ++ IL++ D + G I + + G +IG SG+ I+K++N
Sbjct: 354 KVQQACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQN 413
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISP 230
+G I + AH + ++N L++ LR PP P
Sbjct: 414 DAGVRIQFKQDDGTGPEKIAHIMGPPERCE-HAARIINDLLQ---SLRSGPPGPPGHGMP 469
Query: 231 AYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV--- 287
R Q P + +TF I G +IGR G N+ I + GA +++
Sbjct: 470 PGGRGRGR-GQGIWGPPGGE-MTFS--IPTHKCGLVIGRGGENVKAINQQRGAFVEISRQ 525
Query: 288 YGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
G+ + GS QQ+ AKQ ++E I L
Sbjct: 526 LPPNGDPNFKLFIIRGSPQQIEHAKQPIEEKIEGPL 561
>UNIPROTKB|F1MHR6 [details] [associations]
symbol:LOC505564 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:DAAA02019565 EMBL:DAAA02019566
IPI:IPI00701919 Ensembl:ENSBTAT00000027991 Uniprot:F1MHR6
Length = 708
Score = 92 (37.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 39/170 (22%), Positives = 75/170 (44%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I KI+++ ER + ++ A ++
Sbjct: 112 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTG---------APESV 162
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAAN-----TIR-LLIAGSQAGCLIGMSGQNIEKLR 169
Q+ A ++L D S H AN T++ ++I +AG +IG G+ I++L+
Sbjct: 163 QK-AKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQ 221
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+G ++++ + D+ ++I GD V A + + LRE
Sbjct: 222 ERAGVKMILIQDG-----SQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 266
Score = 77 (32.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 264 GGLIGRCGSNISRIRNESGAMIKV---YGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIY 320
G +IGR G N+ I ++GA +++ G+ + GS QQ+ AKQ ++E I
Sbjct: 398 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 457
Query: 321 SQL 323
L
Sbjct: 458 GPL 460
>UNIPROTKB|Q92945 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005654 GO:GO:0006355 GO:GO:0003677
GO:GO:0006397 GO:GO:0006351 GO:GO:0003723 GO:GO:0051028
GO:GO:0000375 eggNOG:NOG300923 HOGENOM:HOG000231552
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:U94832 EMBL:AC011491 EMBL:AC011539 EMBL:BC085004
EMBL:AF093747 EMBL:AF093745 EMBL:AF093748 EMBL:U69126 EMBL:AB209662
IPI:IPI00479786 IPI:IPI00855957 RefSeq:NP_003676.2
UniGene:Hs.727344 PDB:2HH2 PDB:2HH3 PDB:2JVZ PDB:2OPU PDB:2OPV
PDB:4B8T PDBsum:2HH2 PDBsum:2HH3 PDBsum:2JVZ PDBsum:2OPU
PDBsum:2OPV PDBsum:4B8T ProteinModelPortal:Q92945 SMR:Q92945
DIP:DIP-48484N IntAct:Q92945 STRING:Q92945 PhosphoSite:Q92945
DMDM:160380711 REPRODUCTION-2DPAGE:Q92945 PaxDb:Q92945 PRIDE:Q92945
Ensembl:ENST00000398148 GeneID:8570 KEGG:hsa:8570 UCSC:uc002mer.4
GeneCards:GC19M006413 H-InvDB:HIX0040083 HGNC:HGNC:6316
HPA:HPA034739 MIM:603445 neXtProt:NX_Q92945 PharmGKB:PA30097
InParanoid:Q92945 OMA:QASGNCH PhylomeDB:Q92945 ChEMBL:CHEMBL1795105
ChiTaRS:KHSRP EvolutionaryTrace:Q92945 GenomeRNAi:8570
NextBio:32149 PMAP-CutDB:Q92945 ArrayExpress:Q92945 Bgee:Q92945
CleanEx:HS_KHSRP Genevestigator:Q92945 GermOnline:ENSG00000088247
Uniprot:Q92945
Length = 711
Score = 92 (37.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 39/170 (22%), Positives = 75/170 (44%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I KI+++ ER + ++ A ++
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTG---------APESV 201
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAAN-----TIR-LLIAGSQAGCLIGMSGQNIEKLR 169
Q+ A ++L D S H AN T++ ++I +AG +IG G+ I++L+
Sbjct: 202 QK-AKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQ 260
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+G ++++ + D+ ++I GD V A + + LRE
Sbjct: 261 ERAGVKMILIQDG-----SQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 305
Score = 77 (32.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 264 GGLIGRCGSNISRIRNESGAMIKV---YGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIY 320
G +IGR G N+ I ++GA +++ G+ + GS QQ+ AKQ ++E I
Sbjct: 437 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 496
Query: 321 SQL 323
L
Sbjct: 497 GPL 499
>UNIPROTKB|E2QVT3 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
Ensembl:ENSCAFT00000029641 Uniprot:E2QVT3
Length = 743
Score = 92 (37.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 39/170 (22%), Positives = 75/170 (44%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I KI+++ ER + ++ A ++
Sbjct: 148 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTG---------APESV 198
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAAN-----TIR-LLIAGSQAGCLIGMSGQNIEKLR 169
Q+ A ++L D S H AN T++ ++I +AG +IG G+ I++L+
Sbjct: 199 QK-AKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQ 257
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+G ++++ + D+ ++I GD V A + + LRE
Sbjct: 258 ERAGVKMILIQDG-----SQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 302
Score = 77 (32.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 264 GGLIGRCGSNISRIRNESGAMIKV---YGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIY 320
G +IGR G N+ I ++GA +++ G+ + GS QQ+ AKQ ++E I
Sbjct: 434 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 493
Query: 321 SQL 323
L
Sbjct: 494 GPL 496
>UNIPROTKB|F1SBT6 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:CU929921
Ensembl:ENSSSCT00000014785 Uniprot:F1SBT6
Length = 747
Score = 92 (37.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 39/170 (22%), Positives = 75/170 (44%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I KI+++ ER + ++ A ++
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTG---------APESV 201
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAAN-----TIR-LLIAGSQAGCLIGMSGQNIEKLR 169
Q+ A ++L D S H AN T++ ++I +AG +IG G+ I++L+
Sbjct: 202 QK-AKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQ 260
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+G ++++ + D+ ++I GD V A + + LRE
Sbjct: 261 ERAGVKMILIQDG-----SQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 305
Score = 77 (32.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 264 GGLIGRCGSNISRIRNESGAMIKV---YGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIY 320
G +IGR G N+ I ++GA +++ G+ + GS QQ+ AKQ ++E I
Sbjct: 437 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 496
Query: 321 SQL 323
L
Sbjct: 497 GPL 499
>WB|WBGene00019692 [details] [associations]
symbol:M01A10.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0006898 GO:GO:0003723 eggNOG:NOG300923
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:FO081508 RefSeq:NP_491627.2 ProteinModelPortal:P91393
SMR:P91393 STRING:P91393 PaxDb:P91393 EnsemblMetazoa:M01A10.1
GeneID:187350 KEGG:cel:CELE_M01A10.1 UCSC:M01A10.1 CTD:187350
WormBase:M01A10.1 HOGENOM:HOG000018892 InParanoid:P91393
OMA:KARIMET NextBio:934978 Uniprot:P91393
Length = 586
Score = 94 (38.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 35/143 (24%), Positives = 64/143 (44%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDN 104
+ + V I +P+ + G +IGK+G +++K+R +E I S K
Sbjct: 144 SNSSKVTIIIPIPANKCGAIIGKKGEQMRKLRSWTNCDFILI------QENNIADSVKPL 197
Query: 105 D--NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
+ E+A + + A IL D A VAA ++++ + S G ++G+ G
Sbjct: 198 QITGQPKEVEHA-KALVADILDGFDECPPAGMAGNSPVAAMSLQVKVPRSTVGAIMGLQG 256
Query: 163 QNIEKLRNSSGATIVILAPNQLP 185
NI+K+ N + I + P+ P
Sbjct: 257 SNIKKISNETETKIQFM-PDDDP 278
Score = 72 (30.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 29/87 (33%), Positives = 36/87 (41%)
Query: 234 YSAIRPAQPFVEPTSADYVT----FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
Y R Q VE S + T F MLI S G +IGR G I +I ESGA ++
Sbjct: 295 YVCARLLQKIVEANSENANTPISLFYMLIPASKCGLVIGRGGETIRQINKESGAYCEMSR 354
Query: 290 GKGEQK-HRHIQFGGSAQQVALAKQRV 315
+ GS QV AK +
Sbjct: 355 DPSISAIEKQFVIRGSETQVEHAKHLI 381
>UNIPROTKB|C9JTY5 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00978070 ProteinModelPortal:C9JTY5 SMR:C9JTY5
STRING:C9JTY5 Ensembl:ENST00000466412 ArrayExpress:C9JTY5
Bgee:C9JTY5 Uniprot:C9JTY5
Length = 124
Score = 98 (39.6 bits), Expect = 0.00017, P = 0.00017
Identities = 32/115 (27%), Positives = 57/115 (49%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +++IRE+ ER+ I+ +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSC--PERITTITGS-----TAAVF 73
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNI 165
+A+ IA + D+D A+ G+V+ T+RL+I SQ G LIG +G I
Sbjct: 74 HAVSMIAFKL--DEDLC--AAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Score = 91 (37.1 bits), Expect = 0.00098, P = 0.00098
Identities = 27/96 (28%), Positives = 48/96 (50%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + P +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCP--------ERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA + RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGNVSRP 100
>FB|FBgn0261552 [details] [associations]
symbol:ps "pasilla" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEP] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0000398 HSSP:Q9UNW9 FlyBase:FBgn0261552 EMBL:BT001623
ProteinModelPortal:Q8IGS7 PRIDE:Q8IGS7 InParanoid:Q8IGS7
ArrayExpress:Q8IGS7 Bgee:Q8IGS7 Uniprot:Q8IGS7
Length = 605
Score = 122 (48.0 bits), Expect = 0.00017, P = 0.00017
Identities = 63/247 (25%), Positives = 113/247 (45%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHE---ERVIIIS-SKDNDNVV 108
+I+VP+ G +IGK G I ++++ + ERV +I+ S + VV
Sbjct: 102 KILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAIMVV 161
Query: 109 SD-AENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ + +++ L K D++S+ ++ V ++L+ S AG +IG G I++
Sbjct: 162 MEFIMDKIREKPDLTNKIVDTDSKQTQERDKQV-----KILVPNSTAGMIIGKGGAFIKQ 216
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV-I 226
++ SG+ + I +Q P S E R + I GD NA I +++ E+P +
Sbjct: 217 IKEESGSYVQI---SQKPTDVSLQE--RCITIIGDKENNKNACKMILSKIVEDPQSGTCL 271
Query: 227 SISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESL------VGGLIGRCGSNISRIRNE 280
++S A + S P F PT + Y T + I+ S +G IG S S + N
Sbjct: 272 NVSYA-DVSG--PVANF-NPTGSPYATNQNAINSSTASLNSTLGTTIGGANSAASLLVNG 327
Query: 281 SGAMIKV 287
+G + +
Sbjct: 328 TGINLSI 334
>UNIPROTKB|F8VWX1 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01020747
ProteinModelPortal:F8VWX1 SMR:F8VWX1 Ensembl:ENST00000549571
ArrayExpress:F8VWX1 Bgee:F8VWX1 Uniprot:F8VWX1
Length = 173
Score = 110 (43.8 bits), Expect = 0.00019, P = 0.00019
Identities = 43/161 (26%), Positives = 76/161 (47%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++LI AG +IG GQ I +L+ +GATI + ++RV I G V
Sbjct: 15 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF----YPGTTERVCLIQGTVE 70
Query: 205 AVLNALVE-IGNQLRENP-------PRQVISISPAYNYSAIR---PAQPFVEPTS-ADYV 252
A LNA+ I ++RE P P ++ N I+ P+ P +S +D +
Sbjct: 71 A-LNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPM 129
Query: 253 T------FEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
T ++++ S G +IG+ G+ + + +SGA +++
Sbjct: 130 TTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL 170
>ZFIN|ZDB-GENE-040426-2159 [details] [associations]
symbol:fubp1 "far upstream element (FUSE) binding
protein 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-2159 GO:GO:0003723 CTD:8880 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
OMA:NGQEGDQ EMBL:CT027589 EMBL:BC064649 IPI:IPI00484709
RefSeq:NP_998309.1 UniGene:Dr.76240 SMR:Q6P2A9
Ensembl:ENSDART00000081442 Ensembl:ENSDART00000128153 GeneID:406418
KEGG:dre:406418 InParanoid:Q6P2A9 NextBio:20818020 Uniprot:Q6P2A9
Length = 642
Score = 93 (37.8 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 37/169 (21%), Positives = 77/169 (45%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I ++++E +R + ++ + + + A+ L
Sbjct: 96 VPDGMVGFIIGRGGEQISRLQQESGCKIQIAPDSGGMPDRSVTLTG--SPDAIMTAKRLL 153
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGAT 175
+I + K S + G + ++I S+AG +IG G+ I++L+ +G
Sbjct: 154 SEI---VEKGRPSPAFHHNDGPG---MSVHEMMIPASKAGLVIGKGGETIKQLQERAGVK 207
Query: 176 IVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
+V++ P A D+ ++ISGD V A + + +R+ R+
Sbjct: 208 MVMIQDG--PQNTGA---DKPLRISGDPFKVQQAKDMVMDLIRDQGFRE 251
Score = 71 (30.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQF---GGSAQQVAL 310
F + G +IG+ G I I +SGA I++ +I+ GS QQ+
Sbjct: 377 FTFTVPTMKTGLIIGKGGETIKNISQQSGARIELQRNPPPNSDPNIKIFTVRGSPQQIDY 436
Query: 311 AKQRVDEYI 319
A+Q V+E I
Sbjct: 437 ARQLVEEKI 445
>UNIPROTKB|B3KM64 [details] [associations]
symbol:PCBP4 "cDNA FLJ10382 fis, clone NT2RM2002088, highly
similar to Poly(rC)-binding protein 4" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HOVERGEN:HBG053520 UniGene:Hs.20930 HGNC:HGNC:8652 EMBL:AK001244
IPI:IPI00788617 SMR:B3KM64 STRING:B3KM64 Ensembl:ENST00000395013
UCSC:uc003dci.2 Uniprot:B3KM64
Length = 243
Score = 113 (44.8 bits), Expect = 0.00034, P = 0.00034
Identities = 39/116 (33%), Positives = 60/116 (51%)
Query: 203 VPAV-LNALV-EIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEP---TSADYVTFEML 257
+PA +L+ + G +++E R+V + ++ A+ A P V P + E L
Sbjct: 31 IPASQCGSLIGKAGTKIKEI--REVTKLQQLSSH-AVPFATPSVVPGLDPGTQTSSQEFL 87
Query: 258 ISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQK-HRHIQFGGSAQQVALAK 312
+ L+G +IGR GS IS IR SGA IK+ G + E RH+ GS +ALA+
Sbjct: 88 VPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GNQAEGAGERHVTITGSPVSIALAQ 142
>RGD|621828 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030425 "dendrite" evidence=IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621828 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0043025 GO:GO:0030425
GO:GO:0006397 GO:GO:0006351 GO:GO:0003730 GO:GO:0051028
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:AF308818 IPI:IPI00200920 RefSeq:NP_598286.1
UniGene:Rn.92643 ProteinModelPortal:Q99PF5 SMR:Q99PF5
PhosphoSite:Q99PF5 REPRODUCTION-2DPAGE:Q99PF5 PRIDE:Q99PF5
GeneID:171137 KEGG:rno:171137 NextBio:621918 Genevestigator:Q99PF5
Uniprot:Q99PF5
Length = 721
Score = 120 (47.3 bits), Expect = 0.00037, P = 0.00037
Identities = 63/279 (22%), Positives = 111/279 (39%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDND-NVVSDAE 112
I++P+ + G VIGK G I++++E ++ ++ D ++ D
Sbjct: 239 IMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN-------TNVDKPLRIIGDPY 291
Query: 113 NALQ--QIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q ++ IL++ D + G I + + G +IG SG+ I+K++N
Sbjct: 292 KVQQACEMVMDILRERDQGGFGDRNEYGSRVGGGIDVPVPRHSVGVVIGRSGEMIKKIQN 351
Query: 171 SSGATIVILAPNQLPLCASAH---ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+G I + AH DR + ++N L++ LR PP +
Sbjct: 352 DAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAA----RIINDLLQ---SLRSGPPGPPGA 404
Query: 228 ISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
Q P + +TF I G +IGR G N+ I ++GA +++
Sbjct: 405 PGMPPGGRGRGRGQGNWGPPGGE-MTFS--IPTHKCGLVIGRGGENVKAINQQTGAFVEI 461
Query: 288 ---YGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
G+ + GS QQ+ AKQ ++E I L
Sbjct: 462 SRQLPPNGDPNFKLFVIRGSPQQIDHAKQLIEEKIEGPL 500
>WB|WBGene00013347 [details] [associations]
symbol:Y59A8B.10 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 eggNOG:NOG258094
KO:K14944 EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10
CTD:180183 HSSP:P51513 RefSeq:NP_001256769.1
ProteinModelPortal:Q9GRY9 SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9
MINT:MINT-1109012 STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9
EnsemblMetazoa:Y59A8B.10a UCSC:Y59A8B.10 WormBase:Y59A8B.10a
HOGENOM:HOG000017831 InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344
ArrayExpress:Q9GRY9 Uniprot:Q9GRY9
Length = 413
Score = 118 (46.6 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 46/200 (23%), Positives = 88/200 (44%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXX 85
+ K+ GE EG D + +I++PS +G +IGK G ++ ++ +
Sbjct: 26 ANKKAHFGGEEEGGD--------HLSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQM 77
Query: 86 XXXXXRH---EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAA 142
+ ER+ ++ + N N+++ E+ +I D S+A A
Sbjct: 78 SKNSETYPGTSERICLVKGRLN-NIMAVIESIQDKIREKCA--DQGGSDAFDHKNTSRGA 134
Query: 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD 202
I++++ + AG +IG SG NI+ +R G I + P + A +RVV ++ D
Sbjct: 135 E-IKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVY-PKAGSVEAKT-SLERVVTVAHD 191
Query: 203 -VPAVLNALVEIGNQLRENP 221
A+L A + ++ +P
Sbjct: 192 EASALLQAASRVLEKVASDP 211
Score = 38 (18.4 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 288 YGGKGEQKHRHIQFGG 303
+GG G Q + QFGG
Sbjct: 278 FGGGGGQGYGGPQFGG 293
>UNIPROTKB|Q9GRY9 [details] [associations]
symbol:Y59A8B.10 "Protein Y59A8B.10, isoform a"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00650000093048 eggNOG:NOG258094 KO:K14944
EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10 CTD:180183
HSSP:P51513 RefSeq:NP_001256769.1 ProteinModelPortal:Q9GRY9
SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9 MINT:MINT-1109012
STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9 EnsemblMetazoa:Y59A8B.10a
UCSC:Y59A8B.10 WormBase:Y59A8B.10a HOGENOM:HOG000017831
InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344 ArrayExpress:Q9GRY9
Uniprot:Q9GRY9
Length = 413
Score = 118 (46.6 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 46/200 (23%), Positives = 88/200 (44%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXX 85
+ K+ GE EG D + +I++PS +G +IGK G ++ ++ +
Sbjct: 26 ANKKAHFGGEEEGGD--------HLSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQM 77
Query: 86 XXXXXRH---EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAA 142
+ ER+ ++ + N N+++ E+ +I D S+A A
Sbjct: 78 SKNSETYPGTSERICLVKGRLN-NIMAVIESIQDKIREKCA--DQGGSDAFDHKNTSRGA 134
Query: 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD 202
I++++ + AG +IG SG NI+ +R G I + P + A +RVV ++ D
Sbjct: 135 E-IKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVY-PKAGSVEAKT-SLERVVTVAHD 191
Query: 203 -VPAVLNALVEIGNQLRENP 221
A+L A + ++ +P
Sbjct: 192 EASALLQAASRVLEKVASDP 211
Score = 38 (18.4 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 288 YGGKGEQKHRHIQFGG 303
+GG G Q + QFGG
Sbjct: 278 FGGGGGQGYGGPQFGG 293
>MGI|MGI:1336214 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0030425 "dendrite"
evidence=ISO] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0051028 "mRNA transport" evidence=IEA] Reactome:REACT_78136
Reactome:REACT_88316 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS00178 PROSITE:PS50084 SMART:SM00322
MGI:MGI:1336214 GO:GO:0005829 GO:GO:0005634 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003723 GO:GO:0051028 GO:GO:0010494 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8570 OMA:QASGNCH EMBL:AK156541
EMBL:CT571247 EMBL:BC064454 EMBL:BC108414 IPI:IPI00462934
RefSeq:NP_034743.3 UniGene:Mm.34296 HSSP:Q91WJ8
ProteinModelPortal:Q3U0V1 SMR:Q3U0V1 IntAct:Q3U0V1 STRING:Q3U0V1
PhosphoSite:Q3U0V1 PaxDb:Q3U0V1 PRIDE:Q3U0V1 DNASU:16549
Ensembl:ENSMUST00000007814 GeneID:16549 KEGG:mmu:16549
UCSC:uc008ddr.2 GeneTree:ENSGT00650000093048 InParanoid:Q3U0V1
OrthoDB:EOG451DQX NextBio:290019 Bgee:Q3U0V1 CleanEx:MM_KHSRP
Genevestigator:Q3U0V1 Uniprot:Q3U0V1
Length = 748
Score = 120 (47.3 bits), Expect = 0.00039, P = 0.00039
Identities = 63/279 (22%), Positives = 111/279 (39%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDND-NVVSDAE 112
I++P+ + G VIGK G I++++E ++ ++ D ++ D
Sbjct: 239 IMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN-------TNVDKPLRIIGDPY 291
Query: 113 NALQ--QIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q ++ IL++ D + G I + + G +IG SG+ I+K++N
Sbjct: 292 KVQQACEMVMDILRERDQGGFGDRNEYGSRVGGGIDVPVPRHSVGVVIGRSGEMIKKIQN 351
Query: 171 SSGATIVILAPNQLPLCASAH---ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+G I + AH DR + ++N L++ LR PP +
Sbjct: 352 DAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAA----RIINDLLQ---SLRSGPPGPPGA 404
Query: 228 ISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
Q P + +TF I G +IGR G N+ I ++GA +++
Sbjct: 405 PGMPPGGRGRGRGQGNWGPPGGE-MTFS--IPTHKCGLVIGRGGENVKAINQQTGAFVEI 461
Query: 288 ---YGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
G+ + GS QQ+ AKQ ++E I L
Sbjct: 462 SRQLPPNGDPNFKLFVIRGSPQQIDHAKQLIEEKIEGPL 500
>UNIPROTKB|F1LXN9 [details] [associations]
symbol:F1LXN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 IPI:IPI00777906
Ensembl:ENSRNOT00000017403 Uniprot:F1LXN9
Length = 376
Score = 78 (32.5 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G +++LR ++ T+ C H +DRVV I G V
Sbjct: 96 LLIQQSLAGGIIGVKGAKVKELRENTQTTVKRFQE----WCP--HSTDRVVLIGGKPDRV 149
Query: 207 LNALVEIGNQLRENP 221
+ + I + + E+P
Sbjct: 150 VECIKIIPDLVSESP 164
Score = 77 (32.2 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
+T ++ I + L G +IG G I +I +ESGA IK +G + R I G+ Q+ A
Sbjct: 299 ITTQITIPKDLTGSIIGEGGQRIKQICHESGASIKTDELEGSED-RIIIITGTQDQIQNA 357
Query: 312 K 312
+
Sbjct: 358 Q 358
Score = 39 (18.8 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 43 RRAKAQDVLF--RIIVPSRQIGKVIGK 67
+R++ D + RI++ S G VIGK
Sbjct: 8 KRSRNTDEMVESRILLQSENAGAVIGK 34
>UNIPROTKB|F8VRH0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022901
Ensembl:ENST00000553064 ArrayExpress:F8VRH0 Bgee:F8VRH0
Uniprot:F8VRH0
Length = 310
Score = 104 (41.7 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 125 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 184
Query: 308 VALAKQRVD 316
++LA+ ++
Sbjct: 185 ISLAQYLIN 193
Score = 49 (22.3 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 14/55 (25%), Positives = 31/55 (56%)
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 1 STGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 49
>UNIPROTKB|Q96AE4 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003700 GO:GO:0003723
GO:GO:0006366 GO:GO:0003697 GO:GO:0010628 EMBL:U05040 EMBL:AC096948
EMBL:BC017247 IPI:IPI00375441 IPI:IPI00853059 PIR:A53184
RefSeq:NP_003893.2 UniGene:Hs.567380 PDB:1J4W PDB:2KXH PDBsum:1J4W
PDBsum:2KXH ProteinModelPortal:Q96AE4 SMR:Q96AE4 DIP:DIP-47273N
IntAct:Q96AE4 MINT:MINT-1374324 STRING:Q96AE4 PhosphoSite:Q96AE4
DMDM:116241370 REPRODUCTION-2DPAGE:IPI00375441 PaxDb:Q96AE4
PRIDE:Q96AE4 DNASU:8880 Ensembl:ENST00000294623
Ensembl:ENST00000370768 GeneID:8880 KEGG:hsa:8880 UCSC:uc001dii.3
CTD:8880 GeneCards:GC01M078400 HGNC:HGNC:4004 HPA:HPA006149
MIM:603444 neXtProt:NX_Q96AE4 PharmGKB:PA28420 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
ChiTaRS:FUBP1 EvolutionaryTrace:Q96AE4 GenomeRNAi:8880
NextBio:33343 ArrayExpress:Q96AE4 Bgee:Q96AE4 CleanEx:HS_FUBP1
Genevestigator:Q96AE4 GermOnline:ENSG00000162613 InterPro:IPR015096
Pfam:PF09005 Uniprot:Q96AE4
Length = 644
Score = 100 (40.3 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 36/148 (24%), Positives = 66/148 (44%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I +I++E ER +++ V A+ L
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES--VQSAKRLL 164
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAANTIR-LLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
QI + A G N ++ ++I S+AG +IG G+ I++L+ +G
Sbjct: 165 DQIV-------EKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGV 217
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGD 202
+V++ P A D+ ++I+GD
Sbjct: 218 KMVMIQDG--PQNTGA---DKPLRITGD 240
Score = 62 (26.9 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 263 VGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
VG +IGR G I +I+N++G I+ G R Q G + A + + + + S
Sbjct: 287 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEIITDLLRS 345
>UNIPROTKB|E9PEB5 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
EMBL:AC096948 HGNC:HGNC:4004 ChiTaRS:FUBP1 InterPro:IPR015096
Pfam:PF09005 IPI:IPI00644386 ProteinModelPortal:E9PEB5 SMR:E9PEB5
PRIDE:E9PEB5 Ensembl:ENST00000370767 ArrayExpress:E9PEB5
Bgee:E9PEB5 Uniprot:E9PEB5
Length = 655
Score = 100 (40.3 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 36/148 (24%), Positives = 66/148 (44%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I +I++E ER +++ V A+ L
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES--VQSAKRLL 164
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAANTIR-LLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
QI + A G N ++ ++I S+AG +IG G+ I++L+ +G
Sbjct: 165 DQIV-------EKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGV 217
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGD 202
+V++ P A D+ ++I+GD
Sbjct: 218 KMVMIQDG--PQNTGA---DKPLRITGD 240
Score = 62 (26.9 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 263 VGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
VG +IGR G I +I+N++G I+ G R Q G + A + + + + S
Sbjct: 287 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEIITDLLRS 345
>UNIPROTKB|B4DT31 [details] [associations]
symbol:FUBP1 "cDNA FLJ53425, highly similar to Far upstream
element-binding protein 1" species:9606 "Homo sapiens" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0003723 EMBL:AC096948 UniGene:Hs.567380
HGNC:HGNC:4004 HOGENOM:HOG000231552 HOVERGEN:HBG000625
ChiTaRS:FUBP1 InterPro:IPR015096 Pfam:PF09005 EMBL:AK300032
IPI:IPI00641948 SMR:B4DT31 STRING:B4DT31 Ensembl:ENST00000436586
UCSC:uc010orm.2 OMA:NGQEGDQ Uniprot:B4DT31
Length = 665
Score = 100 (40.3 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 36/148 (24%), Positives = 66/148 (44%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I +I++E ER +++ V A+ L
Sbjct: 128 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES--VQSAKRLL 185
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAANTIR-LLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
QI + A G N ++ ++I S+AG +IG G+ I++L+ +G
Sbjct: 186 DQIV-------EKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGV 238
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGD 202
+V++ P A D+ ++I+GD
Sbjct: 239 KMVMIQDG--PQNTGA---DKPLRITGD 261
Score = 62 (26.9 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 263 VGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
VG +IGR G I +I+N++G I+ G R Q G + A + + + + S
Sbjct: 308 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEIITDLLRS 366
>RGD|1591892 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:1591892
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 100 (40.3 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 36/148 (24%), Positives = 66/148 (44%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I +I++E ER +++ V A+ L
Sbjct: 102 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES--VQSAKRLL 159
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAANTIR-LLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
QI + A G N ++ ++I S+AG +IG G+ I++L+ +G
Sbjct: 160 DQIV-------EKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGV 212
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGD 202
+V++ P A D+ ++I+GD
Sbjct: 213 KMVMIQDG--PQNTGA---DKPLRITGD 235
Score = 61 (26.5 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 263 VGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
VG +IGR G I +I+N++G I+ G R Q G + A + + + + S
Sbjct: 282 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRS 340
>UNIPROTKB|Q32PX7 [details] [associations]
symbol:Fubp1 "Far upstream element-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0010628 "positive regulation
of gene expression" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591892 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 100 (40.3 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 36/148 (24%), Positives = 66/148 (44%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I +I++E ER +++ V A+ L
Sbjct: 102 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES--VQSAKRLL 159
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAANTIR-LLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
QI + A G N ++ ++I S+AG +IG G+ I++L+ +G
Sbjct: 160 DQIV-------EKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGV 212
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGD 202
+V++ P A D+ ++I+GD
Sbjct: 213 KMVMIQDG--PQNTGA---DKPLRITGD 235
Score = 61 (26.5 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 263 VGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
VG +IGR G I +I+N++G I+ G R Q G + A + + + + S
Sbjct: 282 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRS 340
>UNIPROTKB|J9P014 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AAEX03004886
Ensembl:ENSCAFT00000046408 Uniprot:J9P014
Length = 644
Score = 100 (40.3 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 36/148 (24%), Positives = 66/148 (44%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I +I++E ER +++ V A+ L
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES--VQSAKRLL 164
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAANTIR-LLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
QI + A G N ++ ++I S+AG +IG G+ I++L+ +G
Sbjct: 165 DQIV-------EKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGV 217
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGD 202
+V++ P A D+ ++I+GD
Sbjct: 218 KMVMIQDG--PQNTGA---DKPLRITGD 240
Score = 61 (26.5 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 263 VGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
VG +IGR G I +I+N++G I+ G R Q G + A + + + + S
Sbjct: 287 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRS 345
>UNIPROTKB|F1S9S5 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:CU695021
Ensembl:ENSSSCT00000004173 Uniprot:F1S9S5
Length = 645
Score = 100 (40.3 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 36/148 (24%), Positives = 66/148 (44%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I +I++E ER +++ V A+ L
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES--VQSAKRLL 164
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAANTIR-LLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
QI + A G N ++ ++I S+AG +IG G+ I++L+ +G
Sbjct: 165 DQIV-------EKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGV 217
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGD 202
+V++ P A D+ ++I+GD
Sbjct: 218 KMVMIQDG--PQNTGA---DKPLRITGD 240
Score = 61 (26.5 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 263 VGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
VG +IGR G I +I+N++G I+ G R Q G + A + + + + S
Sbjct: 287 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRS 345
>MGI|MGI:1196294 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1196294 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625
InterPro:IPR015096 Pfam:PF09005 EMBL:BC014763 EMBL:AK029458
IPI:IPI00467635 IPI:IPI00874931 UniGene:Mm.278922 PDB:1X4M PDB:1X4N
PDBsum:1X4M PDBsum:1X4N ProteinModelPortal:Q91WJ8 SMR:Q91WJ8
IntAct:Q91WJ8 STRING:Q91WJ8 PhosphoSite:Q91WJ8
REPRODUCTION-2DPAGE:Q91WJ8 PaxDb:Q91WJ8 PRIDE:Q91WJ8
UCSC:uc008rsv.1 InParanoid:Q91WJ8 EvolutionaryTrace:Q91WJ8
CleanEx:MM_FUBP1 Genevestigator:Q91WJ8
GermOnline:ENSMUSG00000028034 Uniprot:Q91WJ8
Length = 651
Score = 116 (45.9 bits), Expect = 0.00089, P = 0.00089
Identities = 37/125 (29%), Positives = 56/125 (44%)
Query: 198 QISGDVPAVLNAL-VEIGNQLR--ENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTF 254
+I GD LN+ G Q R E+ + P N S P + S +T
Sbjct: 40 KIGGDAGTSLNSNDYGYGGQKRPLEDGDQPDAKKVPPQNDSFGAQLPPMHQQQSRSVMTE 99
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQR 314
E + + +VG +IGR G ISRI+ ESG I++ G R G+ + V AK+
Sbjct: 100 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRL 159
Query: 315 VDEYI 319
+D+ +
Sbjct: 160 LDQIV 164
Score = 100 (40.3 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 36/148 (24%), Positives = 66/148 (44%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I +I++E ER +++ V A+ L
Sbjct: 103 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES--VQSAKRLL 160
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAANTIR-LLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
QI + A G N ++ ++I S+AG +IG G+ I++L+ +G
Sbjct: 161 DQIV-------EKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGV 213
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGD 202
+V++ P A D+ ++I+GD
Sbjct: 214 KMVMIQDG--PQNTGA---DKPLRITGD 236
Score = 61 (26.5 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 263 VGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
VG +IGR G I +I+N++G I+ G R Q G + A + + + + S
Sbjct: 283 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRS 341
>UNIPROTKB|F1NV59 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AADN02012752 IPI:IPI00579990
Ensembl:ENSGALT00000014526 ArrayExpress:F1NV59 Uniprot:F1NV59
Length = 632
Score = 107 (42.7 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 50/194 (25%), Positives = 85/194 (43%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I +I++E ER +++ V A+ L
Sbjct: 104 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES--VQSAKRLL 161
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAANTIR-LLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
QI + A G N ++ ++I S+AG +IG G+ I++L+ +G
Sbjct: 162 DQIV-------EKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGV 214
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA---LVE-IGNQ--LRENP-PRQVIS 227
+V++ P A D+ ++I+GD V A ++E I +Q RE P PR +
Sbjct: 215 KMVMIQDG--PQNTGA---DKPLRITGDPYKVQQAKEMVLELIRDQGGFREVPIPRFAVG 269
Query: 228 ISPAYNYSAIRPAQ 241
I N I+ Q
Sbjct: 270 IVIGRNGEMIKKIQ 283
Score = 53 (23.7 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 262 LVG-GLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGSAQQVALAKQRVDE 317
++G G + G I I +SGA I++ + + G+ QQ+ A+Q ++E
Sbjct: 373 IIGKGNVSLRGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQIDYARQLIEE 432
Query: 318 YI 319
I
Sbjct: 433 KI 434
>UNIPROTKB|E2RJQ2 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AAEX03004886
Ensembl:ENSCAFT00000032426 Uniprot:E2RJQ2
Length = 668
Score = 100 (40.3 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 36/148 (24%), Positives = 66/148 (44%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I +I++E ER +++ V A+ L
Sbjct: 130 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES--VQSAKRLL 187
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAANTIR-LLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
QI + A G N ++ ++I S+AG +IG G+ I++L+ +G
Sbjct: 188 DQIV-------EKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGV 240
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGD 202
+V++ P A D+ ++I+GD
Sbjct: 241 KMVMIQDG--PQNTGA---DKPLRITGD 263
Score = 61 (26.5 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 263 VGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
VG +IGR G I +I+N++G I+ G R Q G + A + + + + S
Sbjct: 310 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRS 368
>UNIPROTKB|E1BX03 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AADN02012752
IPI:IPI00679838 Ensembl:ENSGALT00000014525 ArrayExpress:E1BX03
Uniprot:E1BX03
Length = 645
Score = 91 (37.1 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 36/150 (24%), Positives = 66/150 (44%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRH--EERVIIISSKDNDNVVSDAEN 113
VP +G +IG+ G +I +I++E ER +++ V A+
Sbjct: 104 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPALDSGGLPERSCMLTGTPES--VQSAKR 161
Query: 114 ALQQIAALILKDDDSNSEASKVAAGHVAANTIR-LLIAGSQAGCLIGMSGQNIEKLRNSS 172
L QI + A G N ++ ++I S+AG +IG G+ I++L+ +
Sbjct: 162 LLDQIV-------EKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERA 214
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGD 202
G +V++ P A D+ ++I+GD
Sbjct: 215 GVKMVMIQDG--PQNTGA---DKPLRITGD 239
Score = 70 (29.7 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGSAQQVAL 310
F ++ G +IG+ G I I +SGA I++ + + G+ QQ+
Sbjct: 379 FNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQIDY 438
Query: 311 AKQRVDEYI 319
A+Q ++E I
Sbjct: 439 ARQLIEEKI 447
>UNIPROTKB|F1S9S9 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:CU695021
Ensembl:ENSSSCT00000004169 Uniprot:F1S9S9
Length = 708
Score = 100 (40.3 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 36/148 (24%), Positives = 66/148 (44%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXRHEERVIIISSKDNDNVVSDAENAL 115
VP +G +IG+ G +I +I++E ER +++ V A+ L
Sbjct: 147 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES--VQSAKRLL 204
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAANTIR-LLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
QI + A G N ++ ++I S+AG +IG G+ I++L+ +G
Sbjct: 205 DQIV-------EKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGV 257
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGD 202
+V++ P A D+ ++I+GD
Sbjct: 258 KMVMIQDG--PQNTGA---DKPLRITGD 280
Score = 61 (26.5 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 263 VGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
VG +IGR G I +I+N++G I+ G R Q G + A + + + + S
Sbjct: 327 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRS 385
>UNIPROTKB|H3BSS4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 PRIDE:H3BSS4 Ensembl:ENST00000547859
Uniprot:H3BSS4
Length = 184
Score = 106 (42.4 bits), Expect = 0.00090, P = 0.00090
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 103 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 162
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 163 ISLAQYLINVRLSSE 177
>UNIPROTKB|C9J5V4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00946082 ProteinModelPortal:C9J5V4 SMR:C9J5V4 STRING:C9J5V4
Ensembl:ENST00000497653 HOGENOM:HOG000213901 ArrayExpress:C9J5V4
Bgee:C9J5V4 Uniprot:C9J5V4
Length = 107
Score = 91 (37.1 bits), Expect = 0.00098, P = 0.00098
Identities = 27/96 (28%), Positives = 48/96 (50%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + P +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCP--------ERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA + RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGNVSRP 100
>TAIR|locus:2184362 [details] [associations]
symbol:BTR1L "AT5G04430" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003727
"single-stranded RNA binding" evidence=IPI] [GO:0046719 "regulation
of viral protein levels in host cell" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0008380 GO:GO:0003727 KO:K14944
IPI:IPI00533577 RefSeq:NP_850764.1 UniGene:At.4918
ProteinModelPortal:F4JW99 SMR:F4JW99 PRIDE:F4JW99
EnsemblPlants:AT5G04430.2 GeneID:830322 KEGG:ath:AT5G04430
OMA:RNIMEIT PhylomeDB:F4JW99 GO:GO:0046719 Uniprot:F4JW99
Length = 334
Score = 92 (37.4 bits), Expect = 0.0010, Sum P(2) = 0.00099
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
IR L++ + AG +IG G I + + SGA I L+ NQ + +DR++ ISG +
Sbjct: 37 IRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQ-LSRNQEFFPGT---TDRIIMISGSIK 92
Query: 205 AVLNALVEIGNQL 217
V+N L I ++L
Sbjct: 93 EVVNGLELILDKL 105
Score = 60 (26.2 bits), Expect = 0.0010, Sum P(2) = 0.00099
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 258 ISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE----QKHRHIQFGG---SAQQV-A 309
+++ +G ++GR G NI I +GA IK+ +G+ R + G + QQ
Sbjct: 261 VADEHIGLVLGRGGRNIMEITQMTGARIKI-SDRGDFMSGTTDRKVSITGPQRAIQQAET 319
Query: 310 LAKQRVD 316
+ KQ+VD
Sbjct: 320 MIKQKVD 326
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.360 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 330 318 0.00083 116 3 11 23 0.44 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 186
No. of states in DFA: 567 (60 KB)
Total size of DFA: 173 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.22u 0.13s 26.35t Elapsed: 00:00:01
Total cpu time: 26.26u 0.13s 26.39t Elapsed: 00:00:01
Start: Sat May 11 05:46:54 2013 End: Sat May 11 05:46:55 2013
WARNINGS ISSUED: 1