Query 020173
Match_columns 330
No_of_seqs 163 out of 1689
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 12:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3krm_A Insulin-like growth fac 99.9 8E-27 2.7E-31 195.6 17.5 156 143-325 3-160 (163)
2 2jvz_A KH type-splicing, FAR u 99.9 1.3E-26 4.3E-31 194.5 17.0 160 143-322 2-161 (164)
3 2anr_A Neuro-oncological ventr 99.9 1.5E-26 5E-31 196.8 14.4 169 141-321 4-175 (178)
4 2anr_A Neuro-oncological ventr 99.9 9.3E-27 3.2E-31 198.0 13.1 165 47-221 3-177 (178)
5 2jzx_A Poly(RC)-binding protei 99.9 5.1E-26 1.7E-30 190.1 14.2 155 142-321 4-159 (160)
6 1j4w_A FUSE binding protein; s 99.9 1.1E-25 3.7E-30 190.6 14.8 169 143-319 3-174 (174)
7 3krm_A Insulin-like growth fac 99.9 1.5E-25 5E-30 187.9 14.7 155 49-220 2-157 (163)
8 2jzx_A Poly(RC)-binding protei 99.9 1.1E-25 3.6E-30 188.1 11.4 159 47-220 2-160 (160)
9 3n89_A Defective in GERM LINE 99.9 2.6E-25 8.7E-30 206.1 13.1 221 46-319 26-259 (376)
10 2jvz_A KH type-splicing, FAR u 99.9 1.5E-24 5.3E-29 181.7 14.7 157 50-219 2-160 (164)
11 1j4w_A FUSE binding protein; s 99.9 1.1E-24 3.7E-29 184.5 13.0 160 49-217 2-174 (174)
12 2qnd_A FMR1 protein; KH domain 99.8 6.3E-20 2.1E-24 149.9 12.3 134 142-321 3-142 (144)
13 2qnd_A FMR1 protein; KH domain 99.8 2.5E-18 8.5E-23 140.4 12.5 137 49-219 3-142 (144)
14 2e3u_A PH-DIM2P, hypothetical 99.7 3.3E-17 1.1E-21 142.2 12.1 142 143-321 34-191 (219)
15 2e3u_A PH-DIM2P, hypothetical 99.7 1.8E-17 6.3E-22 143.8 6.5 150 50-222 34-194 (219)
16 1zzk_A Heterogeneous nuclear r 99.6 8.9E-16 3E-20 113.1 10.2 73 250-322 5-77 (82)
17 1tua_A Hypothetical protein AP 99.6 7.8E-16 2.7E-20 130.3 10.6 141 144-321 5-160 (191)
18 1x4n_A FAR upstream element bi 99.6 1.7E-15 5.8E-20 114.0 10.1 73 250-322 13-85 (92)
19 1wvn_A Poly(RC)-binding protei 99.6 6.2E-16 2.1E-20 114.0 7.4 74 250-323 4-77 (82)
20 2p2r_A Poly(RC)-binding protei 99.6 5.5E-16 1.9E-20 112.6 6.9 71 251-321 4-74 (76)
21 1j5k_A Heterogeneous nuclear r 99.6 1.5E-15 5.1E-20 113.7 7.9 74 249-322 11-84 (89)
22 2axy_A Poly(RC)-binding protei 99.6 1.4E-15 4.7E-20 109.4 7.2 69 251-321 4-72 (73)
23 1ec6_A RNA-binding protein NOV 99.6 3.9E-15 1.3E-19 111.0 8.5 79 252-330 3-85 (87)
24 1dtj_A RNA-binding neurooncolo 99.6 3.1E-15 1E-19 108.6 7.3 70 252-321 3-75 (76)
25 2hh3_A KH-type splicing regula 99.6 6.9E-15 2.4E-19 113.3 8.4 73 252-324 11-83 (106)
26 2dgr_A Ring finger and KH doma 99.6 2.9E-15 9.9E-20 110.1 5.8 69 249-320 7-75 (83)
27 1tua_A Hypothetical protein AP 99.5 1.6E-14 5.4E-19 122.3 9.5 147 51-220 5-161 (191)
28 2opv_A KHSRP protein; KH domai 99.5 3.4E-14 1.2E-18 105.3 9.3 70 251-320 13-84 (85)
29 1we8_A Tudor and KH domain con 99.5 6.6E-14 2.2E-18 107.7 9.8 74 250-323 13-88 (104)
30 2hh2_A KH-type splicing regula 99.5 3.2E-14 1.1E-18 110.0 8.0 69 253-321 8-79 (107)
31 1x4m_A FAR upstream element bi 99.5 2.5E-14 8.5E-19 108.1 7.0 73 250-322 13-87 (94)
32 2p2r_A Poly(RC)-binding protei 99.5 1.9E-14 6.6E-19 104.4 5.0 72 48-124 3-74 (76)
33 1vig_A Vigilin; RNA-binding pr 99.5 3.9E-14 1.3E-18 101.2 6.3 67 250-318 3-69 (71)
34 1zzk_A Heterogeneous nuclear r 99.5 6.3E-14 2.1E-18 103.1 7.2 73 48-125 5-77 (82)
35 1wvn_A Poly(RC)-binding protei 99.5 3.7E-14 1.2E-18 104.4 5.7 74 47-125 3-76 (82)
36 2axy_A Poly(RC)-binding protei 99.5 8.4E-14 2.9E-18 100.0 7.3 70 142-220 4-73 (73)
37 2ctl_A Vigilin; K homology typ 99.5 1.5E-13 5.1E-18 104.2 8.2 72 251-322 16-88 (97)
38 2cte_A Vigilin; K homology typ 99.5 8.8E-14 3E-18 105.0 6.5 74 250-325 15-88 (94)
39 1x4n_A FAR upstream element bi 99.4 1.7E-13 5.7E-18 103.0 7.5 74 48-126 13-86 (92)
40 2ctm_A Vigilin; K homology typ 99.4 1.9E-13 6.4E-18 103.2 7.3 75 249-324 14-88 (95)
41 1j5k_A Heterogeneous nuclear r 99.4 1.1E-13 3.6E-18 103.5 4.7 73 48-125 12-84 (89)
42 1dtj_A RNA-binding neurooncolo 99.4 5.3E-13 1.8E-17 96.7 8.1 72 143-219 3-75 (76)
43 2ctf_A Vigilin; K homology typ 99.4 9.9E-15 3.4E-19 111.6 -1.2 68 252-324 27-95 (102)
44 1x4m_A FAR upstream element bi 99.4 6.8E-13 2.3E-17 100.1 7.7 75 46-125 11-87 (94)
45 2ctk_A Vigilin; K homology typ 99.4 8.4E-13 2.9E-17 101.3 7.6 71 251-323 16-86 (104)
46 2opv_A KHSRP protein; KH domai 99.4 2.2E-12 7.6E-17 95.4 9.4 74 141-219 12-85 (85)
47 3n89_A Defective in GERM LINE 99.4 1.5E-12 5.1E-17 120.7 9.5 144 140-321 27-174 (376)
48 2hh3_A KH-type splicing regula 99.4 6.4E-13 2.2E-17 102.2 5.4 72 50-126 11-82 (106)
49 1ec6_A RNA-binding protein NOV 99.3 1.6E-12 5.5E-17 96.7 7.3 73 143-220 3-76 (87)
50 2dgr_A Ring finger and KH doma 99.3 8.4E-13 2.9E-17 96.9 5.6 70 140-219 7-76 (83)
51 1vig_A Vigilin; RNA-binding pr 99.3 1.7E-12 5.9E-17 92.6 5.6 67 48-121 3-69 (71)
52 2ctj_A Vigilin; K homology typ 99.3 3.2E-12 1.1E-16 96.3 6.5 72 249-322 14-86 (95)
53 2hh2_A KH-type splicing regula 99.3 6.6E-12 2.3E-16 96.9 8.4 74 144-221 8-81 (107)
54 1we8_A Tudor and KH domain con 99.3 1.4E-11 4.9E-16 94.6 8.9 76 141-221 13-88 (104)
55 2cte_A Vigilin; K homology typ 99.2 2.1E-11 7.3E-16 91.8 7.0 71 141-220 15-85 (94)
56 2ctl_A Vigilin; K homology typ 99.2 4.5E-11 1.5E-15 90.5 8.7 72 142-219 16-87 (97)
57 2ctm_A Vigilin; K homology typ 99.2 5.3E-11 1.8E-15 89.7 8.4 73 140-220 14-86 (95)
58 2ctk_A Vigilin; K homology typ 99.1 1.8E-10 6.1E-15 88.3 7.2 69 142-219 16-84 (104)
59 2ctj_A Vigilin; K homology typ 99.1 5.5E-11 1.9E-15 89.5 3.9 76 44-126 11-87 (95)
60 2ctf_A Vigilin; K homology typ 99.1 5.1E-10 1.7E-14 85.3 8.6 66 49-124 26-92 (102)
61 2cpq_A FragIle X mental retard 99.0 9.4E-10 3.2E-14 81.3 6.3 64 250-318 13-78 (91)
62 2cpq_A FragIle X mental retard 98.8 1.5E-09 5E-14 80.3 3.0 54 45-103 10-64 (91)
63 2yqr_A KIAA0907 protein; struc 98.8 3.7E-08 1.3E-12 76.8 9.6 74 250-323 10-101 (119)
64 1k1g_A SF1-BO isoform; splicin 98.8 2.3E-08 7.9E-13 79.5 8.0 72 250-321 5-99 (131)
65 1k1g_A SF1-BO isoform; splicin 98.7 4.5E-08 1.5E-12 77.8 6.9 73 48-124 5-99 (131)
66 2yqr_A KIAA0907 protein; struc 98.5 1.3E-07 4.5E-12 73.6 6.0 72 49-124 11-99 (119)
67 2bl5_A MGC83862 protein, quaki 98.3 9.3E-07 3.2E-11 70.6 5.5 75 50-124 2-101 (140)
68 2bl5_A MGC83862 protein, quaki 98.3 9E-07 3.1E-11 70.7 5.3 69 252-320 2-100 (140)
69 3u1k_A Polyribonucleotide nucl 98.2 2.5E-06 8.7E-11 84.6 7.2 62 252-319 567-629 (630)
70 3v69_A Protein filia; RNA-bind 98.1 1.4E-05 4.7E-10 62.6 8.8 70 252-322 56-125 (140)
71 3u1k_A Polyribonucleotide nucl 97.7 5.8E-05 2E-09 74.9 7.2 93 108-217 536-629 (630)
72 4aid_A Polyribonucleotide nucl 97.6 3.7E-05 1.3E-09 77.2 5.2 65 252-322 570-635 (726)
73 3v69_A Protein filia; RNA-bind 97.6 0.00028 9.4E-09 55.3 8.0 68 144-219 57-124 (140)
74 2cxc_A NUSA; transcription ter 97.5 0.0001 3.4E-09 59.2 4.7 103 144-288 37-139 (144)
75 2cxc_A NUSA; transcription ter 97.5 6.1E-05 2.1E-09 60.4 3.3 104 50-179 36-139 (144)
76 4aid_A Polyribonucleotide nucl 96.8 0.00083 2.8E-08 67.5 4.4 96 108-220 539-635 (726)
77 3cdi_A Polynucleotide phosphor 96.0 0.0023 7.8E-08 64.5 2.3 63 252-320 560-623 (723)
78 2asb_A Transcription elongatio 96.0 0.0094 3.2E-07 51.9 5.6 97 59-182 126-223 (251)
79 1k0r_A NUSA; two component arr 95.7 0.013 4.3E-07 54.0 5.5 97 59-182 249-346 (366)
80 2asb_A Transcription elongatio 95.6 0.015 5.3E-07 50.6 5.4 105 144-291 113-223 (251)
81 1k0r_A NUSA; two component arr 95.4 0.028 9.5E-07 51.7 6.6 104 144-290 236-345 (366)
82 1e3p_A Guanosine pentaphosphat 95.2 0.0021 7.3E-08 65.0 -1.2 61 253-319 599-660 (757)
83 1hh2_P NUSA, N utilization sub 94.4 0.047 1.6E-06 50.0 5.5 96 59-181 245-341 (344)
84 1hh2_P NUSA, N utilization sub 93.9 0.089 3.1E-06 48.1 6.3 103 144-289 232-340 (344)
85 1e3p_A Guanosine pentaphosphat 92.4 0.013 4.4E-07 59.3 -1.9 46 52-103 600-645 (757)
86 3cdi_A Polynucleotide phosphor 92.0 0.061 2.1E-06 54.2 2.3 94 108-218 529-623 (723)
87 2pt7_G HP1451, hypothetical pr 76.4 0.9 3.1E-05 36.4 1.4 30 51-80 34-63 (152)
88 2jva_A Peptidyl-tRNA hydrolase 74.7 8.1 0.00028 28.9 6.2 59 65-125 23-98 (108)
89 2pt7_G HP1451, hypothetical pr 72.6 1.7 5.9E-05 34.7 2.2 68 252-323 33-100 (152)
90 1wh9_A 40S ribosomal protein S 72.5 0.88 3E-05 33.2 0.4 28 51-78 36-63 (92)
91 1wh9_A 40S ribosomal protein S 62.7 3 0.0001 30.3 1.5 28 253-280 36-63 (92)
92 1j26_A Immature colon carcinom 58.5 13 0.00043 28.0 4.4 59 65-125 30-106 (112)
93 4dh9_Y YAEJ; ribosome, YAEJ, r 55.1 21 0.00073 27.9 5.4 60 65-126 23-99 (140)
94 2ba0_A Archeal exosome RNA bin 51.8 30 0.001 29.3 6.3 56 254-315 138-193 (229)
95 3gku_A Probable RNA-binding pr 42.0 5.4 0.00018 34.0 -0.0 33 51-83 93-125 (225)
96 3u5c_D RP13, YS3, 40S ribosoma 41.7 6.7 0.00023 33.7 0.5 29 51-79 45-73 (240)
97 3gku_A Probable RNA-binding pr 39.7 9.8 0.00034 32.4 1.3 68 252-321 92-159 (225)
98 3j20_C 30S ribosomal protein S 38.1 8 0.00027 32.6 0.5 27 52-78 42-68 (210)
99 2xzm_C KH domain containing pr 37.9 8.8 0.0003 33.0 0.7 29 51-79 48-76 (243)
100 2z0s_A Probable exosome comple 37.8 73 0.0025 26.9 6.6 57 254-316 150-207 (235)
101 3iz6_B 40S ribosomal protein S 36.3 6.8 0.00023 33.4 -0.2 29 51-79 45-73 (227)
102 3u5c_D RP13, YS3, 40S ribosoma 34.6 17 0.00057 31.2 1.9 28 253-280 45-72 (240)
103 3iev_A GTP-binding protein ERA 33.1 21 0.00071 31.5 2.4 38 251-288 239-285 (308)
104 2ba0_A Archeal exosome RNA bin 32.9 1.1E+02 0.0039 25.6 7.0 59 145-216 138-196 (229)
105 3j20_C 30S ribosomal protein S 32.4 16 0.00055 30.7 1.4 26 254-279 42-67 (210)
106 2xzm_C KH domain containing pr 31.5 21 0.00071 30.7 2.0 29 252-280 47-75 (243)
107 3dhx_A Methionine import ATP-b 31.3 96 0.0033 22.5 5.5 48 270-317 34-87 (106)
108 3r8n_C 30S ribosomal protein S 31.0 7.2 0.00025 32.7 -1.0 27 52-78 63-89 (206)
109 2zkq_c 40S ribosomal protein S 30.7 7.9 0.00027 33.3 -0.8 30 50-79 44-73 (243)
110 3iz6_B 40S ribosomal protein S 29.8 19 0.00063 30.7 1.4 29 252-280 44-72 (227)
111 3iev_A GTP-binding protein ERA 29.7 15 0.00051 32.5 0.9 29 49-77 239-268 (308)
112 3bbn_C Ribosomal protein S3; s 29.5 11 0.00037 32.0 -0.1 28 52-79 72-99 (218)
113 3i1m_C 30S ribosomal protein S 28.5 8.3 0.00028 33.0 -1.0 27 52-78 64-90 (233)
114 2vqe_C 30S ribosomal protein S 27.9 13 0.00043 32.0 0.0 27 52-78 64-90 (239)
115 2z0s_A Probable exosome comple 25.8 1.9E+02 0.0064 24.3 7.1 61 145-218 150-211 (235)
116 2qrr_A Methionine import ATP-b 25.3 92 0.0031 22.3 4.4 59 253-317 25-89 (101)
117 2zkq_c 40S ribosomal protein S 24.2 20 0.00069 30.8 0.6 29 252-280 44-72 (243)
118 3r8n_C 30S ribosomal protein S 24.1 19 0.00063 30.2 0.4 35 254-288 63-101 (206)
119 1wf3_A GTP-binding protein; GT 23.9 29 0.00099 30.5 1.7 35 254-288 232-275 (301)
120 2vqe_C 30S ribosomal protein S 23.1 29 0.00099 29.7 1.4 26 255-280 65-90 (239)
121 1go3_E DNA-directed RNA polyme 22.3 57 0.002 26.4 3.1 35 252-289 7-53 (187)
122 3i1m_C 30S ribosomal protein S 22.1 21 0.00072 30.5 0.3 26 254-279 64-89 (233)
123 3bbn_C Ribosomal protein S3; s 22.0 26 0.00089 29.6 0.9 27 254-280 72-98 (218)
124 2qsw_A Methionine import ATP-b 22.0 1.2E+02 0.004 21.6 4.4 59 253-317 25-89 (100)
125 4hhu_A OR280; engineered prote 20.8 2.7E+02 0.0092 20.8 10.2 28 193-220 122-149 (170)
No 1
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.95 E-value=8e-27 Score=195.58 Aligned_cols=156 Identities=22% Similarity=0.340 Sum_probs=132.4
Q ss_pred eEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhhCCC
Q 020173 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222 (330)
Q Consensus 143 ~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~ 222 (330)
.+++|+||...+|.|||++|++|++|+++|||+|.+... ..|. +.+|+|+|+|+++++.+|+.+|.+++.+...
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~-~~~~-----~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~ 76 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPP-ETPD-----SKVRMVIITGPPEAQFKAQGRIYGKLKEENF 76 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCC-SSTT-----CSEEEEEEEECHHHHHHHHHHHHHHHHHTTS
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCC-CCCC-----CCceEEEEEcCHHHHHHHHHHHHHHHhcccc
Confidence 478999999999999999999999999999999999753 2333 5789999999999999999999999987621
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCCcceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCC--CCceeEEE
Q 020173 223 RQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG--EQKHRHIQ 300 (330)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~--~~~~r~v~ 300 (330)
.. |......+.+|.||.+++|+|||++|++|++|++.|||+|.|+++.. ..+++.|+
T Consensus 77 ~~---------------------~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~ 135 (163)
T 3krm_A 77 FG---------------------PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVK 135 (163)
T ss_dssp SC---------------------SSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEE
T ss_pred cc---------------------cccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEE
Confidence 10 11223467899999999999999999999999999999999987542 23456899
Q ss_pred EEcCHHHHHHHHHHHHHHHHHHHHH
Q 020173 301 FGGSAQQVALAKQRVDEYIYSQLIQ 325 (330)
Q Consensus 301 I~Gt~~~v~~A~~~I~~~i~~~~~~ 325 (330)
|+|++++|+.|+.+|.++|.+...+
T Consensus 136 I~G~~~~v~~A~~~I~~~i~~~~~~ 160 (163)
T 3krm_A 136 IIGHFYASQMAQRKIRDILAQVKQQ 160 (163)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHTC-
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999876543
No 2
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=194.52 Aligned_cols=160 Identities=21% Similarity=0.346 Sum_probs=131.9
Q ss_pred eEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhhCCC
Q 020173 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222 (330)
Q Consensus 143 ~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~ 222 (330)
.+.+|+||...+|.|||++|++|++|+++|||+|.+.+....+. ..+|.|+|+|++++|.+|+.+|.+++.+...
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~-----~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~ 76 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNT-----NVDKPLRIIGDPYKVQQACEMVMDILRERDQ 76 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSS-----SSCEEEEEEECHHHHHHHHHHHHHHTTCSSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCC-----CCceEEEEEcCHHHHHHHHHHHHHHHHhccC
Confidence 47899999999999999999999999999999999975432222 5689999999999999999999999987632
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCCcceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEE
Q 020173 223 RQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFG 302 (330)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~ 302 (330)
.. +.+ ...|.+. ...+.+|.||.+++|+|||++|++|++|++.|||+|.|++..+.+.++.|+|+
T Consensus 77 ~~---~~~---------~~~~~~~---~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~ 141 (164)
T 2jvz_A 77 GG---FGD---------RNEYGSR---IGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIM 141 (164)
T ss_dssp CC---CSS---------CSSCTTS---CSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEE
T ss_pred CC---CCC---------ccccCCC---CCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEE
Confidence 21 000 0011110 12457899999999999999999999999999999999986655668999999
Q ss_pred cCHHHHHHHHHHHHHHHHHH
Q 020173 303 GSAQQVALAKQRVDEYIYSQ 322 (330)
Q Consensus 303 Gt~~~v~~A~~~I~~~i~~~ 322 (330)
|++++++.|+.+|.++|.+.
T Consensus 142 G~~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 142 GPPDRCEHAARIINDLLQSL 161 (164)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999998764
No 3
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.94 E-value=1.5e-26 Score=196.76 Aligned_cols=169 Identities=24% Similarity=0.359 Sum_probs=133.2
Q ss_pred cceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCC-CCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhh
Q 020173 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN-QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (330)
Q Consensus 141 ~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~-~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 219 (330)
..++++|+||...+|.|||++|++|++|+++|||+|++.... ..|. ..+|+|+|+|+.+++.+|..+|.+++.+
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~-----~~er~v~I~G~~~~v~~A~~~I~~~~~~ 78 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG-----TTERVCLIQGTIEALNAVHGFIAEKIRE 78 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTT-----SSEEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCC-----CCCceEEEEeCHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999997543 2343 5789999999999999999999999988
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCCCCCcceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCC--CCcee
Q 020173 220 NPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG--EQKHR 297 (330)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~--~~~~r 297 (330)
.+.....+ ......+|..........+.+|.||.+++|+|||++|++|++|++.|||+|.|++... .+.++
T Consensus 79 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~ 151 (178)
T 2anr_A 79 MPQNVAKT-------EPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNR 151 (178)
T ss_dssp CCCC------------------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEE
T ss_pred cCCccccC-------CcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCce
Confidence 75432100 0000001111111234578899999999999999999999999999999999997532 34689
Q ss_pred EEEEEcCHHHHHHHHHHHHHHHHH
Q 020173 298 HIQFGGSAQQVALAKQRVDEYIYS 321 (330)
Q Consensus 298 ~v~I~Gt~~~v~~A~~~I~~~i~~ 321 (330)
.|+|+|++++|+.|+.+|.++|.+
T Consensus 152 ~v~I~G~~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 152 VVTVSGEPEQNRKAVELIIQKIQE 175 (178)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHS
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998864
No 4
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.94 E-value=9.3e-27 Score=197.98 Aligned_cols=165 Identities=25% Similarity=0.387 Sum_probs=133.7
Q ss_pred CCceEEEEEecCCccceeecccChhhhhhhhccCcEEEEecC---CCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHh
Q 020173 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA---IARHEERVIIISSKDNDNVVSDAENALQQIAALIL 123 (330)
Q Consensus 47 ~~~~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~---~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~ 123 (330)
.++++++|+||.+.+|.||||+|++|++|+++|||+|+|++. .++.++|+|+|+|+. +++.+|..+|.+++.
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~-----~~v~~A~~~I~~~~~ 77 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTI-----EALNAVHGFIAEKIR 77 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECH-----HHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCH-----HHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999864 356789999999985 678899999999886
Q ss_pred hcCCCCccc-------cccccCCCcceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcE
Q 020173 124 KDDDSNSEA-------SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV 196 (330)
Q Consensus 124 ~~~~~~~~~-------~~~~~~~~~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~ 196 (330)
+........ ...........+.+|+||..++|+|||++|++|++|++.|||+|.+.+....+. ..++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~-----~~~~~ 152 (178)
T 2anr_A 78 EMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN-----LQNRV 152 (178)
T ss_dssp CCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC---------CCEEE
T ss_pred ccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCC-----CCceE
Confidence 543221100 000011123468999999999999999999999999999999999976533232 57899
Q ss_pred EEEEcCHHHHHHHHHHHHHHHhhCC
Q 020173 197 VQISGDVPAVLNALVEIGNQLRENP 221 (330)
Q Consensus 197 v~I~G~~~~v~~A~~~I~~~i~~~~ 221 (330)
|+|+|++++|.+|+.+|.+++.++|
T Consensus 153 v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 153 VTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred EEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999885
No 5
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.94 E-value=5.1e-26 Score=190.09 Aligned_cols=155 Identities=29% Similarity=0.497 Sum_probs=130.5
Q ss_pred ceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhhCC
Q 020173 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221 (330)
Q Consensus 142 ~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 221 (330)
..+++|+||...+|.|||++|++|++|+++|||+|++...+ ..+|.|+|.|+.+++.+|+.+|.+++.+..
T Consensus 4 ~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~---------~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN---------CPERIITLAGPTNAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCT---------TTEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCC---------CCceEEEEEeCHHHHHHHHHHHHHHHHhhc
Confidence 46899999999999999999999999999999999997531 468999999999999999999999997752
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCCCCcceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCC-CCCceeEEE
Q 020173 222 PRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQ 300 (330)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~-~~~~~r~v~ 300 (330)
... ....+ .......+.+|.||.+++|+|||++|++|++|++.|||+|.|+++. +.+.++.|+
T Consensus 75 ~~~---~~~~~-------------~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~ 138 (160)
T 2jzx_A 75 SSS---MTNST-------------AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAIT 138 (160)
T ss_dssp TSC---CCSSS-------------CCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEE
T ss_pred ccc---CCCCc-------------cCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEE
Confidence 210 00000 0112347899999999999999999999999999999999998642 356789999
Q ss_pred EEcCHHHHHHHHHHHHHHHHH
Q 020173 301 FGGSAQQVALAKQRVDEYIYS 321 (330)
Q Consensus 301 I~Gt~~~v~~A~~~I~~~i~~ 321 (330)
|+|++++|+.|+.+|.+++.+
T Consensus 139 I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 139 IAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EEECHHHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHhc
Confidence 999999999999999998865
No 6
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.93 E-value=1.1e-25 Score=190.65 Aligned_cols=169 Identities=23% Similarity=0.332 Sum_probs=126.4
Q ss_pred eEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhhCCC
Q 020173 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222 (330)
Q Consensus 143 ~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~ 222 (330)
.+++|+||...+|.|||++|++|++|+++|||+|+|...+ +. ..+|+|+|+|+.++|.+|+.+|.+++.+...
T Consensus 3 ~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~--~~-----~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~ 75 (174)
T 1j4w_A 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD--GT-----TPERIAQITGPPDRAQHAAEIITDLLRSVQA 75 (174)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT--TS-----CSEEEEEEEECHHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCC--CC-----CCccEEEEEeCHHHHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999999999999997532 22 4689999999999999999999999987532
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCCcceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCC---CCceeEE
Q 020173 223 RQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG---EQKHRHI 299 (330)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~---~~~~r~v 299 (330)
...-+..+.-. ...+....|.........+.+|.||.+++|+|||++|++|++|++.|||+|+|++..+ ++.++.|
T Consensus 76 ~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v 154 (174)
T 1j4w_A 76 GNPGGPGPGGR-GRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLF 154 (174)
T ss_dssp -----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEE
T ss_pred CCCCCCCCCCC-CCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEE
Confidence 11000000000 0000000110000123468899999999999999999999999999999999997532 3568999
Q ss_pred EEEcCHHHHHHHHHHHHHHH
Q 020173 300 QFGGSAQQVALAKQRVDEYI 319 (330)
Q Consensus 300 ~I~Gt~~~v~~A~~~I~~~i 319 (330)
+|+|++++++.|+.+|.++|
T Consensus 155 ~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 155 TIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EEECCHHHHHHHHHHHHHHC
T ss_pred EEECCHHHHHHHHHHHHHhC
Confidence 99999999999999999864
No 7
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=187.90 Aligned_cols=155 Identities=23% Similarity=0.363 Sum_probs=130.9
Q ss_pred ceEEEEEecCCccceeecccChhhhhhhhccCcEEEEecC-CCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhhcCC
Q 020173 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDD 127 (330)
Q Consensus 49 ~~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~-~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~~~ 127 (330)
.-+++|+||.+.+|.||||+|++|++|+++|||+|+|++. .++..+|+|+|+|+. +.+.+|..+|.+.+.+...
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~-----e~v~~A~~~I~~~~~e~~~ 76 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPP-----EAQFKAQGRIYGKLKEENF 76 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECH-----HHHHHHHHHHHHHHHHTTS
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCH-----HHHHHHHHHHHHHHhcccc
Confidence 3578999999999999999999999999999999999986 567889999999975 7889999999998876532
Q ss_pred CCccccccccCCCcceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHH
Q 020173 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207 (330)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~ 207 (330)
... ......+.+|+||..++|+|||++|++|++|++.|||+|.+.. +..|.. .+++.|+|+|++++|.
T Consensus 77 ~~~-------~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~-~~~~~~----~~~~~v~I~G~~~~v~ 144 (163)
T 3krm_A 77 FGP-------KEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR-DQTPDE----NDQVIVKIIGHFYASQ 144 (163)
T ss_dssp SCS-------SCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCT-TCCCCT----TSEEEEEEEECHHHHH
T ss_pred ccc-------ccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECC-CCCCCC----CCceEEEEEeCHHHHH
Confidence 111 1123457899999999999999999999999999999999964 444541 3445899999999999
Q ss_pred HHHHHHHHHHhhC
Q 020173 208 NALVEIGNQLREN 220 (330)
Q Consensus 208 ~A~~~I~~~i~~~ 220 (330)
+|+.+|.+++.+.
T Consensus 145 ~A~~~I~~~i~~~ 157 (163)
T 3krm_A 145 MAQRKIRDILAQV 157 (163)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 8
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=188.14 Aligned_cols=159 Identities=27% Similarity=0.492 Sum_probs=131.8
Q ss_pred CCceEEEEEecCCccceeecccChhhhhhhhccCcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhhcC
Q 020173 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDD 126 (330)
Q Consensus 47 ~~~~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~~ 126 (330)
+..++++|+||.+.+|.||||+|++|++|+++|||+|+|++. ++++|+|+|.|+. +++.+|..+|.+.+.+..
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~-----~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-----NAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEH-----HHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCH-----HHHHHHHHHHHHHHHhhc
Confidence 356899999999999999999999999999999999999986 5678999999984 688899999988876542
Q ss_pred CCCccccccccCCCcceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHH
Q 020173 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206 (330)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v 206 (330)
.... ... ........+.+++||..++|+|||++|++|++|++.|||+|.+.. +..|. ..++.|+|+|+++++
T Consensus 75 ~~~~-~~~-~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~-~~~~~-----~~~~~v~I~G~~~~v 146 (160)
T 2jzx_A 75 SSSM-TNS-TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLPN-----STERAITIAGIPQSI 146 (160)
T ss_dssp TSCC-CSS-SCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC-CCSTT-----CCEEEEEEEECHHHH
T ss_pred cccC-CCC-ccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC-CCCCC-----CCceEEEEEcCHHHH
Confidence 2110 000 011123568999999999999999999999999999999999964 34443 578999999999999
Q ss_pred HHHHHHHHHHHhhC
Q 020173 207 LNALVEIGNQLREN 220 (330)
Q Consensus 207 ~~A~~~I~~~i~~~ 220 (330)
.+|+.+|.+++.++
T Consensus 147 ~~A~~~I~~~i~e~ 160 (160)
T 2jzx_A 147 IECVKQICVVMLET 160 (160)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998763
No 9
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.92 E-value=2.6e-25 Score=206.05 Aligned_cols=221 Identities=11% Similarity=0.105 Sum_probs=156.9
Q ss_pred CCCceEEEEEecCCccceeecccC--hhhhhhhhccCcEEEEecCCC-----CCcceEEEEecCCCCcchhHHHHHHHHH
Q 020173 46 KAQDVLFRIIVPSRQIGKVIGKEG--HRIQKIREETKATIKIADAIA-----RHEERVIIISSKDNDNVVSDAENALQQI 118 (330)
Q Consensus 46 ~~~~~~~~i~vP~~~vg~IIGk~G--~~Ik~I~~~tg~~I~i~~~~~-----~~~ervi~I~G~~~~~~~~~~~~A~~~i 118 (330)
+.+.+++++.||..++++||||+| ++|++|+++|||+|+|++..+ ......|+|+|.. +++++|..+|
T Consensus 26 ~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~-----enVE~AR~~I 100 (376)
T 3n89_A 26 NPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYF-----GDVDRARMLM 100 (376)
T ss_dssp CTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEH-----HHHHHHHHHH
T ss_pred cCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCH-----HHHHHHHHHH
Confidence 467899999999999999999999 999999999999999998641 1234689999986 7888888888
Q ss_pred HHHHhhcCCCCccccccccCCCcceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEE
Q 020173 119 AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198 (330)
Q Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~ 198 (330)
.+.+ ...+.+.+|...+.. ..-+..|.+ ++.++++|.+........ .....|+
T Consensus 101 ~~l~-------------------Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~-----~~sd~V~ 153 (376)
T 3n89_A 101 RRNC-------------------HFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNG-----IVTTYLR 153 (376)
T ss_dssp HHSC-------------------EEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC----------CEEEEE
T ss_pred HhcC-------------------CceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccccC-----CCCCEEE
Confidence 8742 123444455432221 111223444 567999999865321100 1245799
Q ss_pred EEcCHHHHHHHHHHHHHHHhhCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcceEEEEEEccccccceecCCC--chHHH
Q 020173 199 ISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCG--SNISR 276 (330)
Q Consensus 199 I~G~~~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGk~G--~~Ik~ 276 (330)
|+|...++.+|.+.+..++....... ......++..|.|+..+|..|||++| ..|++
T Consensus 154 IrG~~~nv~~akeA~~~Ll~~l~~~e---------------------~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~Ikk 212 (376)
T 3n89_A 154 ITAREKNQHELIEAAKRLNEILFRES---------------------PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPV 212 (376)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHHCC-----------------------CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHH
T ss_pred EEcChhhHHHHHHHHHHHHHHHHhhh---------------------cccccceEEEEEeCHHHHHHhhcCCCcchHHHH
Confidence 99998766665555444443321100 01124588999999999999999999 66799
Q ss_pred HHHHhCCeEEEeCCCCC----CceeEEEEEcCHHHHHHHHHHHHHHH
Q 020173 277 IRNESGAMIKVYGGKGE----QKHRHIQFGGSAQQVALAKQRVDEYI 319 (330)
Q Consensus 277 i~~~tga~I~i~~~~~~----~~~r~v~I~Gt~~~v~~A~~~I~~~i 319 (330)
|+++|||+|.+|+..+. .....|+|+|+.++|..|+++|.++|
T Consensus 213 Ir~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 213 IERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp HHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred HHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 99999999999975331 23578999999999999999998864
No 10
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=181.75 Aligned_cols=157 Identities=19% Similarity=0.327 Sum_probs=127.9
Q ss_pred eEEEEEecCCccceeecccChhhhhhhhccCcEEEEecCC--CCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhhcCC
Q 020173 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI--ARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDD 127 (330)
Q Consensus 50 ~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~--~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~~~ 127 (330)
++++|+||.+.+|+|||++|++|++|+++|||+|+|.+.. ++.++|+|+|+|+. +++.+|+.+|.+++.+...
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~-----~~v~~A~~~I~~ii~e~~~ 76 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDP-----YKVQQACEMVMDILRERDQ 76 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECH-----HHHHHHHHHHHHHTTCSSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCH-----HHHHHHHHHHHHHHHhccC
Confidence 5789999999999999999999999999999999997542 45678999999975 7889999999998765542
Q ss_pred CCccccccccCCCcceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHH
Q 020173 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207 (330)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~ 207 (330)
..... ....+.....+.+|+||..++|+|||++|++|++|+++|||+|.+.+.+ +. +.++.|+|+|+++++.
T Consensus 77 ~~~~~-~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~--~~-----~~~~~v~I~G~~~~v~ 148 (164)
T 2jvz_A 77 GGFGD-RNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--GT-----GPEKIAHIMGPPDRCE 148 (164)
T ss_dssp CCCSS-CSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC--TT-----SSEEEEEEESCHHHHH
T ss_pred CCCCC-ccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC--CC-----CCcEEEEEEcCHHHHH
Confidence 21100 0011111234688999999999999999999999999999999997543 11 4579999999999999
Q ss_pred HHHHHHHHHHhh
Q 020173 208 NALVEIGNQLRE 219 (330)
Q Consensus 208 ~A~~~I~~~i~~ 219 (330)
+|+.+|.+++.+
T Consensus 149 ~A~~~I~~~i~~ 160 (164)
T 2jvz_A 149 HAARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
No 11
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.92 E-value=1.1e-24 Score=184.55 Aligned_cols=160 Identities=21% Similarity=0.331 Sum_probs=126.2
Q ss_pred ceEEEEEecCCccceeecccChhhhhhhhccCcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhhcCCC
Q 020173 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDS 128 (330)
Q Consensus 49 ~~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~~~~ 128 (330)
..+++|+||.+.+|.||||+|++|++|+++|||+|+|++..++.++|+|.|.|+. +++.+|+.+|.+++.+....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~-----~~v~~A~~~I~~~~~~~~~~ 76 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPP-----DRAQHAAEIITDLLRSVQAG 76 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECH-----HHHHHHHHHHHHHHHHHC--
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCH-----HHHHHHHHHHHHHHHhcccC
Confidence 4678999999999999999999999999999999999876556789999999985 67889999998887654321
Q ss_pred Ccccc------------ccc-cCCCcceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCc
Q 020173 129 NSEAS------------KVA-AGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195 (330)
Q Consensus 129 ~~~~~------------~~~-~~~~~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r 195 (330)
..... ... .......+.+|+||..++|+|||++|++|++|++.|||+|.|.... .+ +. .+.++
T Consensus 77 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~-~~-~~--~~~~~ 152 (174)
T 1j4w_A 77 NPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP-PP-NA--DPNMK 152 (174)
T ss_dssp ---------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC-TT-TS--CTTEE
T ss_pred CCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC-CC-CC--CCCce
Confidence 10000 000 0001245889999999999999999999999999999999997532 12 11 25679
Q ss_pred EEEEEcCHHHHHHHHHHHHHHH
Q 020173 196 VVQISGDVPAVLNALVEIGNQL 217 (330)
Q Consensus 196 ~v~I~G~~~~v~~A~~~I~~~i 217 (330)
.|+|+|+++++.+|+.+|.++|
T Consensus 153 ~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 153 LFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EEEEECCHHHHHHHHHHHHHHC
T ss_pred EEEEECCHHHHHHHHHHHHHhC
Confidence 9999999999999999998864
No 12
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.82 E-value=6.3e-20 Score=149.94 Aligned_cols=134 Identities=22% Similarity=0.277 Sum_probs=106.7
Q ss_pred ceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhhCC
Q 020173 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221 (330)
Q Consensus 142 ~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 221 (330)
.++.+|+||...+|.+||++|++|+.|++++|+++..... ..+..+...++++.|.+|..++ . .
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~----------~~~~~i~~~~~p~~v~~~~~~l----~-~- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE----------DTCTFHIYGEDQDAVKKARSFL----E-F- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET----------TTTEEEEEESSHHHHHHHHHHH----C-E-
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC----------CchheeeccCCHHHHHHHHHhh----h-c-
Confidence 3578999999999999999999999999999954433321 2345555566799998886532 1 1
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCCCCcceEEEEEEccccccceecCCCchHHHHHHHhCC-eEEEeCCCCCC---ce-
Q 020173 222 PRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGA-MIKVYGGKGEQ---KH- 296 (330)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga-~I~i~~~~~~~---~~- 296 (330)
...++.||.+++|.+|||+|++|+.+++.||+ +|+|+...+.. ++
T Consensus 67 ------------------------------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~ 116 (144)
T 2qnd_A 67 ------------------------------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEG 116 (144)
T ss_dssp ------------------------------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTT
T ss_pred ------------------------------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCC
Confidence 23789999999999999999999999999997 99999753321 22
Q ss_pred -eEEEEEcCHHHHHHHHHHHHHHHHH
Q 020173 297 -RHIQFGGSAQQVALAKQRVDEYIYS 321 (330)
Q Consensus 297 -r~v~I~Gt~~~v~~A~~~I~~~i~~ 321 (330)
+.|+|+|++++|+.|+.+|+++|.+
T Consensus 117 ~~~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 117 MVPFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred eeEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 4699999999999999999998854
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.77 E-value=2.5e-18 Score=140.43 Aligned_cols=137 Identities=20% Similarity=0.247 Sum_probs=101.9
Q ss_pred ceEEEEEecCCccceeecccChhhhhhhhccCcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhhcCCC
Q 020173 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDS 128 (330)
Q Consensus 49 ~~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~~~~ 128 (330)
.++.+|+||.+.+|++||++|++|++|++++|+.|...+ ..++.++...+++ ..+.+ +..++ ..
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~---~~~~~~i~~~~~p-----~~v~~----~~~~l-~~--- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLD---EDTCTFHIYGEDQ-----DAVKK----ARSFL-EF--- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEE---TTTTEEEEEESSH-----HHHHH----HHHHH-CE---
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccC---CCchheeeccCCH-----HHHHH----HHHhh-hc---
Confidence 578899999999999999999999999999994443333 2344544444443 23333 22222 11
Q ss_pred CccccccccCCCcceEEEEEeeccccceecCCCChhHHHHHHHhCC-eEEEeCCCCCCcccCCCCCCc--EEEEEcCHHH
Q 020173 129 NSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA-TIVILAPNQLPLCASAHESDR--VVQISGDVPA 205 (330)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga-~I~i~~~~~~p~~~~~~~~~r--~v~I~G~~~~ 205 (330)
...++.||..++|++|||+|++|+.+++.||+ +|.|...+.... ..+++ .|+|+|+.++
T Consensus 67 --------------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~----~~~~~~~~vtI~G~~~~ 128 (144)
T 2qnd_A 67 --------------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV----PQEEGMVPFVFVGTKDS 128 (144)
T ss_dssp --------------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC----CCCTTEEEEEEEEEHHH
T ss_pred --------------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc----cccCCeeEEEEEeCHHH
Confidence 13789999999999999999999999999997 899986432211 02343 5899999999
Q ss_pred HHHHHHHHHHHHhh
Q 020173 206 VLNALVEIGNQLRE 219 (330)
Q Consensus 206 v~~A~~~I~~~i~~ 219 (330)
|.+|..+|..+|.+
T Consensus 129 v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 129 IANATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
No 14
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.72 E-value=3.3e-17 Score=142.22 Aligned_cols=142 Identities=22% Similarity=0.287 Sum_probs=111.1
Q ss_pred eEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcC-----HHHHHHHHHHHHHHH
Q 020173 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD-----VPAVLNALVEIGNQL 217 (330)
Q Consensus 143 ~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~-----~~~v~~A~~~I~~~i 217 (330)
....+.||...++.|||++|++|+.|+++||++|.+.. .++.|+|.|+ ++++.+|..+|.++.
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~------------~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS------------ETGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT------------TTCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc------------CCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999999963 3567888875 699999999999988
Q ss_pred hhCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcceEEEEEEcc-----------ccccceecCCCchHHHHHHHhCCeEE
Q 020173 218 RENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE-----------SLVGGLIGRCGSNISRIRNESGAMIK 286 (330)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IP~-----------~~vg~IIGk~G~~Ik~i~~~tga~I~ 286 (330)
+...+...... . ........+.|+. ..+|+|||++|++|+.|++.|||+|.
T Consensus 102 rg~~~e~g~~l---------------l---~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~ 163 (219)
T 2e3u_A 102 RGFSPERAFRL---------------L---NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVS 163 (219)
T ss_dssp TTCCHHHHGGG---------------G---STTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEE
T ss_pred ccCCcccccee---------------c---cCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEE
Confidence 54321100000 0 0011222233332 26899999999999999999999999
Q ss_pred EeCCCCCCceeEEEEEcCHHHHHHHHHHHHHHHHH
Q 020173 287 VYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321 (330)
Q Consensus 287 i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~ 321 (330)
|.. +.|+|.|++++++.|+.+|.++|..
T Consensus 164 v~~-------~~v~i~G~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 164 VYG-------KTVAIIGNPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp EET-------TEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred ECC-------eEEEEEeCHHHHHHHHHHHHHHHcC
Confidence 984 4699999999999999999999843
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.69 E-value=1.8e-17 Score=143.78 Aligned_cols=150 Identities=20% Similarity=0.208 Sum_probs=111.6
Q ss_pred eEEEEEecCCccceeecccChhhhhhhhccCcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhhcCCCC
Q 020173 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSN 129 (330)
Q Consensus 50 ~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~~~~~ 129 (330)
-..++.||.+.+|.|||++|++|+.|+++|||+|+|+. .++.+.|.++........+.+|...|..++.......
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~ 108 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPER 108 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHH
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCccc
Confidence 45699999999999999999999999999999999984 2466888886532223678899999988763221100
Q ss_pred ccccccccCCCcceEEEEEee-----------ccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEE
Q 020173 130 SEASKVAAGHVAANTIRLLIA-----------GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198 (330)
Q Consensus 130 ~~~~~~~~~~~~~~~~~llip-----------~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~ 198 (330)
...... .....-.+-++ ....|+|||++|++|+.|++.|||+|.+. ++.|.
T Consensus 109 g~~ll~----dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~--------------~~~v~ 170 (219)
T 2e3u_A 109 AFRLLN----EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY--------------GKTVA 170 (219)
T ss_dssp HGGGGS----TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE--------------TTEEE
T ss_pred cceecc----CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC--------------CeEEE
Confidence 000000 00111112222 23689999999999999999999999995 35799
Q ss_pred EEcCHHHHHHHHHHHHHHHhhCCC
Q 020173 199 ISGDVPAVLNALVEIGNQLRENPP 222 (330)
Q Consensus 199 I~G~~~~v~~A~~~I~~~i~~~~~ 222 (330)
|.|+.+++..|..+|++++.+.++
T Consensus 171 i~G~~~~i~~A~~~i~~li~g~~~ 194 (219)
T 2e3u_A 171 IIGNPIQIEIAKTAIEKLARGSPH 194 (219)
T ss_dssp EEECHHHHHHHHHHHHHHHTTCCH
T ss_pred EEeCHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999977654
No 16
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.64 E-value=8.9e-16 Score=113.10 Aligned_cols=73 Identities=29% Similarity=0.428 Sum_probs=67.4
Q ss_pred cceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHHHHHHHHH
Q 020173 250 DYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322 (330)
Q Consensus 250 ~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~~ 322 (330)
...+.+|.||.+++|.|||++|++|++|+++|||+|+|++..+++.+|.|+|+|++++++.|+.+|.+++.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 4588999999999999999999999999999999999998656678899999999999999999999998753
No 17
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.64 E-value=7.8e-16 Score=130.34 Aligned_cols=141 Identities=16% Similarity=0.238 Sum_probs=114.2
Q ss_pred EEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEE-----cCHHHHHHHHHHHHHHHh
Q 020173 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS-----GDVPAVLNALVEIGNQLR 218 (330)
Q Consensus 144 ~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~-----G~~~~v~~A~~~I~~~i~ 218 (330)
..+++||...+|.|||++|++++.|++.+|++|.+.. .++.++|. |++.++.+|..+|.++.+
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~------------~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT------------ENSMVIVEPEAEGIPPVNLMKAAEVVKAISL 72 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET------------TTTEEEEEESSTTSCHHHHHHHHHHHHHHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc------------CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999963 46778888 999999999999999887
Q ss_pred hCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcceEEEEEEcc----------ccccceecCCCchHHHHHHHhCCeEEEe
Q 020173 219 ENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE----------SLVGGLIGRCGSNISRIRNESGAMIKVY 288 (330)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IP~----------~~vg~IIGk~G~~Ik~i~~~tga~I~i~ 288 (330)
..++.+..... .+......|.|+. ...|+|||++|.+|+.|+..|||+|.|.
T Consensus 73 gf~~e~A~~Ll------------------~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~ 134 (191)
T 1tua_A 73 GFPPEKAFRLL------------------EEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG 134 (191)
T ss_dssp TCCHHHHGGGG------------------STTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC
T ss_pred CCCHHHhhhcc------------------cCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc
Confidence 65322110000 0122333444542 3579999999999999999999999998
Q ss_pred CCCCCCceeEEEEEcCHHHHHHHHHHHHHHHHH
Q 020173 289 GGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321 (330)
Q Consensus 289 ~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~ 321 (330)
. ..|.|.|++++++.|+..|..+|..
T Consensus 135 ~-------~~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 135 E-------YEVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp S-------SEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred C-------CEEEEEeChHHHHHHHHHHHHHHcC
Confidence 4 3799999999999999999998864
No 18
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.63 E-value=1.7e-15 Score=114.03 Aligned_cols=73 Identities=32% Similarity=0.471 Sum_probs=67.8
Q ss_pred cceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHHHHHHHHH
Q 020173 250 DYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322 (330)
Q Consensus 250 ~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~~ 322 (330)
...+.+|.||.+++|.|||++|++|++|+++|||+|+|+++.++..+|.|+|+|++++|+.|+.+|.++|.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 4588999999999999999999999999999999999998765677999999999999999999999998764
No 19
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.62 E-value=6.2e-16 Score=113.96 Aligned_cols=74 Identities=34% Similarity=0.502 Sum_probs=66.6
Q ss_pred cceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHHHHHHHHHH
Q 020173 250 DYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323 (330)
Q Consensus 250 ~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~~~ 323 (330)
...+.+|.||.+++|.|||++|++|++|++.|||+|+|++..+++.+|.|+|+|++++++.|+.+|.+++.+..
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK 77 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC---
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhhh
Confidence 45889999999999999999999999999999999999986566789999999999999999999999987763
No 20
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.62 E-value=5.5e-16 Score=112.59 Aligned_cols=71 Identities=32% Similarity=0.501 Sum_probs=66.2
Q ss_pred ceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHHHHHHHH
Q 020173 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321 (330)
Q Consensus 251 ~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~ 321 (330)
..+.+|.||.+++|.|||++|++|++|++.|||+|+|++..+++.+|.|+|+|++++++.|+.+|.+++.+
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 47889999999999999999999999999999999999866677899999999999999999999998753
No 21
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.60 E-value=1.5e-15 Score=113.66 Aligned_cols=74 Identities=28% Similarity=0.425 Sum_probs=68.2
Q ss_pred CcceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHHHHHHHHH
Q 020173 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322 (330)
Q Consensus 249 ~~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~~ 322 (330)
....+.+|.||.+++|.|||++|++|++|+++|||+|+|++...++.+|.|+|+|++++++.|+.+|.+++.+.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 45688999999999999999999999999999999999998656678999999999999999999999998764
No 22
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.60 E-value=1.4e-15 Score=109.44 Aligned_cols=69 Identities=26% Similarity=0.442 Sum_probs=64.5
Q ss_pred ceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHHHHHHHH
Q 020173 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321 (330)
Q Consensus 251 ~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~ 321 (330)
..+++|.||.+++|.|||++|++|++|+++|||+|+|+++ +..+|.|+|+|++++++.|+.+|.++|.+
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999975 46789999999999999999999998864
No 23
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.59 E-value=3.9e-15 Score=110.96 Aligned_cols=79 Identities=19% Similarity=0.322 Sum_probs=68.8
Q ss_pred eEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCC---CCCceeEEEEEcCHHHHHHHHHHHHHHHHHHHHH-hh
Q 020173 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK---GEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQ-QA 327 (330)
Q Consensus 252 ~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~---~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~~~~~-~~ 327 (330)
.+.+|.||.+++|.|||++|++|++|++.|||+|+|+++. +++.+|.|+|+|++++++.|+.+|.++|.+...+ .+
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~r~~ 82 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRAS 82 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccccccc
Confidence 5789999999999999999999999999999999999753 3567899999999999999999999998875444 44
Q ss_pred cCC
Q 020173 328 GAQ 330 (330)
Q Consensus 328 ~~~ 330 (330)
+.|
T Consensus 83 ~~~ 85 (87)
T 1ec6_A 83 NPQ 85 (87)
T ss_dssp SCC
T ss_pred ccc
Confidence 443
No 24
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.58 E-value=3.1e-15 Score=108.64 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=63.2
Q ss_pred eEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCC---CCCceeEEEEEcCHHHHHHHHHHHHHHHHH
Q 020173 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK---GEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321 (330)
Q Consensus 252 ~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~---~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~ 321 (330)
.+.+|.||.+++|.|||++|++|++|++.|||+|+|+++. +++.+|.|+|+|++++++.|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 6789999999999999999999999999999999999753 345689999999999999999999988643
No 25
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=6.9e-15 Score=113.27 Aligned_cols=73 Identities=21% Similarity=0.344 Sum_probs=66.2
Q ss_pred eEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Q 020173 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLI 324 (330)
Q Consensus 252 ~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~~~~ 324 (330)
.+.+|.||.+++|.|||++|++||+|+++|+|+|+|+++...+.+|.|+|+|+++++++|+.+|.+++.+..+
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~~ 83 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRS 83 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhcccc
Confidence 5789999999999999999999999999999999999766566799999999999999999999999987644
No 26
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.9e-15 Score=110.12 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=62.4
Q ss_pred CcceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHHHHHHH
Q 020173 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIY 320 (330)
Q Consensus 249 ~~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~ 320 (330)
....+.+|.||.+++|.|||++|++||+|+++|||+|+|++.. +++.|+|+|++++++.|+++|.+++.
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~---~~~~v~ItG~~e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD---KEPVFAVTGMPENVDRAREEIEAHIT 75 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS---SCCEEEEEECTTTHHHHHHHHHHHHH
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC---CCCeEEEEcCHHHHHHHHHHHHHHHh
Confidence 3568899999999999999999999999999999999999632 36889999999999999999999754
No 27
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.54 E-value=1.6e-14 Score=122.29 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=110.4
Q ss_pred EEEEEecCCccceeecccChhhhhhhhccCcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhhcCCCCc
Q 020173 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNS 130 (330)
Q Consensus 51 ~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~~~~~~ 130 (330)
.++++||.+.+|.|||++|++++.|++.+|++|+++. .++.+.|..+........+++|...|..+.......
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e-- 77 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPE-- 77 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHH--
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHH--
Confidence 3699999999999999999999999999999999975 356778874433333477889998888776543211
Q ss_pred cccccccCCCcceEEEEEee----------ccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEE
Q 020173 131 EASKVAAGHVAANTIRLLIA----------GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200 (330)
Q Consensus 131 ~~~~~~~~~~~~~~~~llip----------~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~ 200 (330)
++...-. +....-.+-++ ....|+|||++|.+++.|+..|||+|.|. ++.+.|.
T Consensus 78 ~A~~Ll~--Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~--------------~~~v~i~ 141 (191)
T 1tua_A 78 KAFRLLE--EDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG--------------EYEVAII 141 (191)
T ss_dssp HHGGGGS--TTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC--------------SSEEEEE
T ss_pred Hhhhccc--CcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc--------------CCEEEEE
Confidence 1111000 01111122233 23579999999999999999999999994 3479999
Q ss_pred cCHHHHHHHHHHHHHHHhhC
Q 020173 201 GDVPAVLNALVEIGNQLREN 220 (330)
Q Consensus 201 G~~~~v~~A~~~I~~~i~~~ 220 (330)
|+.+++..|...|.+++...
T Consensus 142 G~~~~i~~Ar~~i~~li~g~ 161 (191)
T 1tua_A 142 GDYERAMAAKQAIEMLAEGR 161 (191)
T ss_dssp EEHHHHHHHHHHHHHHHTTC
T ss_pred eChHHHHHHHHHHHHHHcCC
Confidence 99999999999999999754
No 28
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.53 E-value=3.4e-14 Score=105.29 Aligned_cols=70 Identities=17% Similarity=0.281 Sum_probs=64.0
Q ss_pred ceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCC--CCceeEEEEEcCHHHHHHHHHHHHHHHH
Q 020173 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG--EQKHRHIQFGGSAQQVALAKQRVDEYIY 320 (330)
Q Consensus 251 ~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~--~~~~r~v~I~Gt~~~v~~A~~~I~~~i~ 320 (330)
..+..|.||.+++|.|||++|++||+|+++|||+|.|+++.. .+.+|.|+|+|++++++.|+.+|.+++.
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 477899999999999999999999999999999999998643 4568999999999999999999999874
No 29
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.51 E-value=6.6e-14 Score=107.74 Aligned_cols=74 Identities=28% Similarity=0.326 Sum_probs=66.0
Q ss_pred cceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCC--CceeEEEEEcCHHHHHHHHHHHHHHHHHHH
Q 020173 250 DYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE--QKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323 (330)
Q Consensus 250 ~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~--~~~r~v~I~Gt~~~v~~A~~~I~~~i~~~~ 323 (330)
...+.+|.||.+++|.|||++|++|++|+++|||+|+|++.... +.++.|+|+|++++++.|+.+|.+++.+..
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 34788999999999999999999999999999999999975433 358999999999999999999999986543
No 30
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=3.2e-14 Score=109.99 Aligned_cols=69 Identities=28% Similarity=0.415 Sum_probs=62.9
Q ss_pred EEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCC---CCceeEEEEEcCHHHHHHHHHHHHHHHHH
Q 020173 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG---EQKHRHIQFGGSAQQVALAKQRVDEYIYS 321 (330)
Q Consensus 253 ~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~---~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~ 321 (330)
+.+|.||.+++|.|||++|++||+|+++|||+|+|.++.+ +..+|.|+|+|++++|+.|+.+|.++|.+
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCS
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhc
Confidence 6789999999999999999999999999999999997642 34689999999999999999999998754
No 31
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.51 E-value=2.5e-14 Score=108.06 Aligned_cols=73 Identities=23% Similarity=0.346 Sum_probs=65.9
Q ss_pred cceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCC--CCceeEEEEEcCHHHHHHHHHHHHHHHHHH
Q 020173 250 DYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG--EQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322 (330)
Q Consensus 250 ~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~--~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~~ 322 (330)
...+.+|.||.+++|.|||++|++||+|+++|||+|+|+++.. ...+|.|+|+|++++++.|+.+|.+++.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 4588999999999999999999999999999999999997643 346899999999999999999999998653
No 32
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.49 E-value=1.9e-14 Score=104.35 Aligned_cols=72 Identities=26% Similarity=0.437 Sum_probs=65.7
Q ss_pred CceEEEEEecCCccceeecccChhhhhhhhccCcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhh
Q 020173 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (330)
Q Consensus 48 ~~~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~ 124 (330)
..++++|+||.+.+|.|||++|++|++|+++|||+|+|++..++..+|+|.|.|+. +++..|..+|.+++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~-----~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSA-----ASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECH-----HHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCH-----HHHHHHHHHHHHHHHc
Confidence 46889999999999999999999999999999999999987677889999999985 7889999999998754
No 33
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.48 E-value=3.9e-14 Score=101.21 Aligned_cols=67 Identities=27% Similarity=0.390 Sum_probs=61.1
Q ss_pred cceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHHHHH
Q 020173 250 DYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEY 318 (330)
Q Consensus 250 ~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~ 318 (330)
...+..|.||.+++|.|||++|++|++|+++|||+|+|+++. ..+|.|+|+|++++++.|+.+|.++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g--~~~~~V~I~G~~~~v~~A~~~I~~i 69 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS--EKSNLIRIEGDPQGVQQAKRELLEL 69 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC--SSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC--CcccEEEEEcCHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999753 3568999999999999999999875
No 34
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.48 E-value=6.3e-14 Score=103.13 Aligned_cols=73 Identities=29% Similarity=0.505 Sum_probs=65.9
Q ss_pred CceEEEEEecCCccceeecccChhhhhhhhccCcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhhc
Q 020173 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (330)
Q Consensus 48 ~~~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~ 125 (330)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|++..++..+|+|+|+|+. +++..|..+|.+++.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~-----~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ-----DQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECH-----HHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCH-----HHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999987677789999999975 78889999999887653
No 35
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.48 E-value=3.7e-14 Score=104.41 Aligned_cols=74 Identities=26% Similarity=0.424 Sum_probs=65.5
Q ss_pred CCceEEEEEecCCccceeecccChhhhhhhhccCcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhhc
Q 020173 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (330)
Q Consensus 47 ~~~~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~ 125 (330)
...++++|+||.+.+|.||||+|++|++|+++|||+|+|++..++..+|.|+|+|++ +++.+|..+|.+++.+.
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~-----~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSA-----ASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECH-----HHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCH-----HHHHHHHHHHHHHHHhh
Confidence 356889999999999999999999999999999999999987667789999999986 68889999999987544
No 36
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.47 E-value=8.4e-14 Score=100.05 Aligned_cols=70 Identities=36% Similarity=0.629 Sum_probs=63.6
Q ss_pred ceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhhC
Q 020173 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (330)
Q Consensus 142 ~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 220 (330)
...++|+||...+|.|||++|++|++|+++|||+|++.+.+ .++|+|+|.|+++++.+|+.+|.++|.++
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~---------~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN---------CPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSC---------CSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCC---------CCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999999999999999997531 46899999999999999999999999863
No 37
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.46 E-value=1.5e-13 Score=104.22 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=64.6
Q ss_pred ceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCC-CCceeEEEEEcCHHHHHHHHHHHHHHHHHH
Q 020173 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG-EQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322 (330)
Q Consensus 251 ~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~-~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~~ 322 (330)
.++..|.||..++|.|||++|++|++|+++|||+|+|+++.. ...+|.|+|+|+.++++.|+.+|..++...
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999997543 235789999999999999999999987654
No 38
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.45 E-value=8.8e-14 Score=104.99 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=65.8
Q ss_pred cceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHHHHHHHHHHHH
Q 020173 250 DYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQ 325 (330)
Q Consensus 250 ~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~~~~~ 325 (330)
...+..|.||.+++|.|||++|++|++|+++|||+|+|++.. ..++.|+|+|++++++.|+.+|.+++.+....
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~--~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~~~ 88 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD--DPSNQIKITGTKEGIEKARHEVLLISAEQDKR 88 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT--SSCCEEEEEECHHHHHHHHHHHHHHHHHHHTC
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC--CCCCeEEEEECHHHHHHHHHHHHHHhhccccc
Confidence 458899999999999999999999999999999999999642 23578999999999999999999998876543
No 39
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.44 E-value=1.7e-13 Score=103.04 Aligned_cols=74 Identities=22% Similarity=0.366 Sum_probs=66.6
Q ss_pred CceEEEEEecCCccceeecccChhhhhhhhccCcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhhcC
Q 020173 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDD 126 (330)
Q Consensus 48 ~~~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~~ 126 (330)
..++++|+||.+++|+||||+|++|++|+++|||+|+|++..++..+|+|+|.|+. +++.+|..+|.+++.+..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~-----e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTP-----ESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECH-----HHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCH-----HHHHHHHHHHHHHHHhcc
Confidence 56899999999999999999999999999999999999987666789999999985 788999999999886653
No 40
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.44 E-value=1.9e-13 Score=103.21 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=66.2
Q ss_pred CcceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Q 020173 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLI 324 (330)
Q Consensus 249 ~~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~~~~ 324 (330)
....+..|.||.+++|.|||++|++|++|+++|||+|+|+++. ....+.|+|+|++++|+.|+.+|.+++.+...
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g-~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG-APDPNCVTVTGLPENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT-CSCTTEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC-CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999998642 23468999999999999999999998876543
No 41
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.42 E-value=1.1e-13 Score=103.50 Aligned_cols=73 Identities=29% Similarity=0.505 Sum_probs=66.2
Q ss_pred CceEEEEEecCCccceeecccChhhhhhhhccCcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhhc
Q 020173 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (330)
Q Consensus 48 ~~~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~ 125 (330)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|++..++..+|+|+|+|+. +++.+|..+|.+++.+.
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~-----e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ-----DQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEH-----HHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCH-----HHHHHHHHHHHHHHHhh
Confidence 47899999999999999999999999999999999999987677789999999985 78889999999887654
No 42
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.41 E-value=5.3e-13 Score=96.69 Aligned_cols=72 Identities=22% Similarity=0.376 Sum_probs=63.1
Q ss_pred eEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCC-CCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhh
Q 020173 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (330)
Q Consensus 143 ~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~-~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 219 (330)
.+.+|+||...+|.|||++|++|++|++.|||+|.+.+.+. .|. +.++.|+|+|+++++.+|..+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~-----~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG-----TRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTT-----CCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCC-----CceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999986432 232 5789999999999999999999998764
No 43
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.41 E-value=9.9e-15 Score=111.61 Aligned_cols=68 Identities=16% Similarity=0.299 Sum_probs=61.5
Q ss_pred eEEEEEEccccccceecCCCchHHHHHHH-hCCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Q 020173 252 VTFEMLISESLVGGLIGRCGSNISRIRNE-SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLI 324 (330)
Q Consensus 252 ~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~-tga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~~~~ 324 (330)
.+.+|.||..+|+.|||++|++|++|+++ ++++|.||+ .++.|+|.|++++|+.|+.+|.+++.+..-
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~~~~ItI~G~~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----GEDKITLEGPTEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----SSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----CCCEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999996 599999996 356899999999999999999998876443
No 44
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.39 E-value=6.8e-13 Score=100.10 Aligned_cols=75 Identities=19% Similarity=0.356 Sum_probs=65.4
Q ss_pred CCCceEEEEEecCCccceeecccChhhhhhhhccCcEEEEecCCC--CCcceEEEEecCCCCcchhHHHHHHHHHHHHHh
Q 020173 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA--RHEERVIIISSKDNDNVVSDAENALQQIAALIL 123 (330)
Q Consensus 46 ~~~~~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~--~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~ 123 (330)
.+..++++|+||.+.+|+||||+|++|++|+++|||+|+|.+... ...+|+|+|+|+. +.+..|+.+|.+++.
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~-----~~v~~A~~~I~~~i~ 85 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDP-----YKVQQAKEMVLELIR 85 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECT-----TTHHHHHHHHHHHHC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCH-----HHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999999987632 3468999999976 578899999999886
Q ss_pred hc
Q 020173 124 KD 125 (330)
Q Consensus 124 ~~ 125 (330)
+.
T Consensus 86 ~~ 87 (94)
T 1x4m_A 86 DQ 87 (94)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 45
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.38 E-value=8.4e-13 Score=101.31 Aligned_cols=71 Identities=25% Similarity=0.203 Sum_probs=64.0
Q ss_pred ceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHHHHHHHHHH
Q 020173 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323 (330)
Q Consensus 251 ~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~~~ 323 (330)
..+..|.||.+++|.|||++|++|++|+++|||+|+|+++.. ..+.|+|+|++++++.|+.+|.+++.+..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~--~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL--QSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT--TCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCC--CcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 378899999999999999999999999999999999997533 45699999999999999999999987654
No 46
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.37 E-value=2.2e-12 Score=95.44 Aligned_cols=74 Identities=24% Similarity=0.433 Sum_probs=64.1
Q ss_pred cceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhh
Q 020173 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (330)
Q Consensus 141 ~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 219 (330)
.....+|.||...+|.|||++|++|++|+++|||+|.+......+. +.+|.|+|+|+++++.+|+.+|.+++.+
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~-----~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNT-----NVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSST-----TSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCC-----CCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 3457899999999999999999999999999999999976322222 5789999999999999999999998853
No 47
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.36 E-value=1.5e-12 Score=120.71 Aligned_cols=144 Identities=8% Similarity=0.011 Sum_probs=102.5
Q ss_pred CcceEEEEEeeccccceecCCCC--hhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHH
Q 020173 140 VAANTIRLLIAGSQAGCLIGMSG--QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217 (330)
Q Consensus 140 ~~~~~~~llip~~~~g~iIG~~G--~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i 217 (330)
...+++.+.||..+|+.|||++| ++|++|+++|||+|+|+..+. +.. .+......|+|+|.+++|.+|+.+|.+++
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~-~~~-~~~~ks~~VtItG~~enVE~AR~~I~~l~ 104 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSV-GGT-TPDPFAQQVTITGYFGDVDRARMLMRRNC 104 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCC-CSS-SCCTTTTEEEEEEEHHHHHHHHHHHHHSC
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcc-ccc-CCcCCCCeEEEEcCHHHHHHHHHHHHhcC
Confidence 45679999999999999999999 999999999999999975430 000 00123468999999999999999998743
Q ss_pred hhCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCC--CCc
Q 020173 218 RENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG--EQK 295 (330)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~--~~~ 295 (330)
..+..+.+|...++. ...+..|.+ ++.++++|.++.... +..
T Consensus 105 ---------------------------------Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~ 148 (376)
T 3n89_A 105 ---------------------------------HFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIV 148 (376)
T ss_dssp ---------------------------------EEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----C
T ss_pred ---------------------------------CceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccccCCC
Confidence 255667777644332 111234444 567899999875422 113
Q ss_pred eeEEEEEcCHHHHHHHHHHHHHHHHH
Q 020173 296 HRHIQFGGSAQQVALAKQRVDEYIYS 321 (330)
Q Consensus 296 ~r~v~I~Gt~~~v~~A~~~I~~~i~~ 321 (330)
...|+|+|...+++.|++.+.+++..
T Consensus 149 sd~V~IrG~~~nv~~akeA~~~Ll~~ 174 (376)
T 3n89_A 149 TTYLRITAREKNQHELIEAAKRLNEI 174 (376)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred CCEEEEEcChhhHHHHHHHHHHHHHH
Confidence 67899999998888777666555543
No 48
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=6.4e-13 Score=102.23 Aligned_cols=72 Identities=24% Similarity=0.338 Sum_probs=63.4
Q ss_pred eEEEEEecCCccceeecccChhhhhhhhccCcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhhcC
Q 020173 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDD 126 (330)
Q Consensus 50 ~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~~ 126 (330)
.+++|+||.+.+++||||+|++|++|+++|+|+|+|++.....++|+|+|+|+. +++.+|..+|.+++.+..
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~-----e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPP-----DRCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSH-----HHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCH-----HHHHHHHHHHHHHHhccc
Confidence 468999999999999999999999999999999999876556678999999985 678899999999886654
No 49
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.35 E-value=1.6e-12 Score=96.67 Aligned_cols=73 Identities=22% Similarity=0.375 Sum_probs=64.5
Q ss_pred eEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCC-CCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhhC
Q 020173 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (330)
Q Consensus 143 ~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~-~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 220 (330)
.+.+|+||...+|.|||++|++|++|++.|||+|.|...+. .|. +.++.|+|+|+++++.+|..+|.+++.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g-----~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG-----TRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTT-----SCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCC-----CCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 37899999999999999999999999999999999976432 232 57899999999999999999999999764
No 50
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=8.4e-13 Score=96.92 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=63.0
Q ss_pred CcceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhh
Q 020173 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (330)
Q Consensus 140 ~~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 219 (330)
....+.+|.||..++|+|||++|++||+|+++|||+|++++. .++++++|+|+++++.+|+.+|.+++..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~----------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR----------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS----------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC----------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 345789999999999999999999999999999999999753 2468999999999999999999998764
No 51
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.32 E-value=1.7e-12 Score=92.58 Aligned_cols=67 Identities=19% Similarity=0.355 Sum_probs=58.5
Q ss_pred CceEEEEEecCCccceeecccChhhhhhhhccCcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHH
Q 020173 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAAL 121 (330)
Q Consensus 48 ~~~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~ 121 (330)
...+..|.||.+++|.|||++|++|++|+++|||+|+|++. +..++.|+|.|+. +.+.+|..+|..+
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~--g~~~~~V~I~G~~-----~~v~~A~~~I~~i 69 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD--SEKSNLIRIEGDP-----QGVQQAKRELLEL 69 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC--CSSSEEEEEEESS-----HHHHHHHHHHHHT
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC--CCcccEEEEEcCH-----HHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999885 4467899999985 5778888887764
No 52
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=3.2e-12 Score=96.28 Aligned_cols=72 Identities=24% Similarity=0.267 Sum_probs=64.7
Q ss_pred CcceEEEEEEccccccceecCCCchHHHHHHHh-CCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHHHHHHHHH
Q 020173 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNES-GAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322 (330)
Q Consensus 249 ~~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~t-ga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~~ 322 (330)
.+..+..|.||.++++.|||++|++|++|+++| ||+|+|+++ ++..+.|+|.|+..++++|+.+|++++.+.
T Consensus 14 ~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~--g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 14 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE--GSGSDTVVIRGPSSDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp CSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT--TTTCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC--CCCcceEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 456788999999999999999999999999999 999999974 345678999999999999999999998753
No 53
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=6.6e-12 Score=96.93 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=64.3
Q ss_pred EEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhhCC
Q 020173 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221 (330)
Q Consensus 144 ~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 221 (330)
+.+|+||..+++.|||++|++|++|+++|||+|+|.... .+.. ...++.|+|+|+.++|.+|+.+|.+++.+..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-~~~~---~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL-PPNG---DPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC-CTTC---CTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc-CCCC---CCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999997532 2211 1467999999999999999999999998763
No 54
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.27 E-value=1.4e-11 Score=94.58 Aligned_cols=76 Identities=24% Similarity=0.271 Sum_probs=65.4
Q ss_pred cceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhhC
Q 020173 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (330)
Q Consensus 141 ~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 220 (330)
...+.+|+||...+|.|||++|++|++|+++|||+|.|....... ...++.|+|+|+.+++.+|+.+|.+++.+.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-----~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT-----LLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS-----SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC-----CCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 346889999999999999999999999999999999997542111 135899999999999999999999999775
Q ss_pred C
Q 020173 221 P 221 (330)
Q Consensus 221 ~ 221 (330)
+
T Consensus 88 ~ 88 (104)
T 1we8_A 88 E 88 (104)
T ss_dssp H
T ss_pred h
Confidence 3
No 55
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.21 E-value=2.1e-11 Score=91.82 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=63.3
Q ss_pred cceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhhC
Q 020173 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (330)
Q Consensus 141 ~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 220 (330)
..++..|.||...+|.|||++|++|++|+++|||+|.|+..+ ..++.|+|+|+.+++.+|+.+|..++.+.
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~---------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD---------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT---------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC---------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 346899999999999999999999999999999999997532 23578999999999999999999999775
No 56
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.21 E-value=4.5e-11 Score=90.50 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=63.0
Q ss_pred ceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhh
Q 020173 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (330)
Q Consensus 142 ~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 219 (330)
..+..|.||..+++.|||++|++|++|+++|||+|.|++... +. ..++.|+|+|+.+++.+|+.+|..++.+
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~~-----~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-GN-----QPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-CS-----SCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-CC-----CCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999975321 21 3578999999999999999999998865
No 57
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.20 E-value=5.3e-11 Score=89.69 Aligned_cols=73 Identities=18% Similarity=0.148 Sum_probs=64.0
Q ss_pred CcceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhh
Q 020173 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (330)
Q Consensus 140 ~~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 219 (330)
...++..+.||..+++.|||++|++|++|+++|||+|+|+.... ..++.|+|+|.++++.+|+.+|..++.+
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~--------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA--------PDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC--------SCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC--------CCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999965321 2467899999999999999999999876
Q ss_pred C
Q 020173 220 N 220 (330)
Q Consensus 220 ~ 220 (330)
.
T Consensus 86 ~ 86 (95)
T 2ctm_A 86 Y 86 (95)
T ss_dssp H
T ss_pred H
Confidence 4
No 58
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.09 E-value=1.8e-10 Score=88.28 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=61.3
Q ss_pred ceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhh
Q 020173 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (330)
Q Consensus 142 ~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 219 (330)
.....|.||...++.|||++|++|++|+++|||+|.|+..+ ...+.|+|+|..+++.+|+.+|..++.+
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g---------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE---------LQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT---------TTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC---------CCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 35889999999999999999999999999999999997532 2345899999999999999999999865
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.08 E-value=5.5e-11 Score=89.49 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=64.8
Q ss_pred cCCCCceEEEEEecCCccceeecccChhhhhhhhcc-CcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHHH
Q 020173 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET-KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI 122 (330)
Q Consensus 44 ~~~~~~~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~t-g~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i 122 (330)
+..++.++..|.||.++++.|||++|.+|++|+++| ||+|+|++. +...+.|+|.|++ ..+.+|..+|..++
T Consensus 11 ~e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~--g~~~~~V~I~G~~-----~~v~~A~~~I~~iv 83 (95)
T 2ctj_A 11 KDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE--GSGSDTVVIRGPS-----SDVEKAKKQLLHLA 83 (95)
T ss_dssp CCCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT--TTTCCEEEEESCH-----HHHHHHHHHHHHHH
T ss_pred HHHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC--CCCcceEEEEcCH-----HHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999 999999875 4456789999986 57788888888887
Q ss_pred hhcC
Q 020173 123 LKDD 126 (330)
Q Consensus 123 ~~~~ 126 (330)
.+..
T Consensus 84 ~e~e 87 (95)
T 2ctj_A 84 EEKQ 87 (95)
T ss_dssp HHHS
T ss_pred hhhh
Confidence 5543
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.06 E-value=5.1e-10 Score=85.35 Aligned_cols=66 Identities=24% Similarity=0.368 Sum_probs=57.1
Q ss_pred ceEEEEEecCCccceeecccChhhhhhhhc-cCcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhh
Q 020173 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREE-TKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (330)
Q Consensus 49 ~~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~-tg~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~ 124 (330)
-++.+|.||..++++|||++|++|++|+++ ++++|+|++ .++.|+|.|+. +.+.+|..+|..++.+
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~~~~ItI~G~~-----~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----GEDKITLEGPT-----EDVSVAQEQIEGMVKD 92 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----SSCEEEEEECH-----HHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----CCCEEEEECCH-----HHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999996 599999997 35789999986 6778888887776644
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.96 E-value=9.4e-10 Score=81.34 Aligned_cols=64 Identities=28% Similarity=0.344 Sum_probs=57.4
Q ss_pred cceEEEEEEccccccceecCCCchHHHHHHHhCCe-EEEeCCCCCCceeEEEEEc-CHHHHHHHHHHHHHH
Q 020173 250 DYVTFEMLISESLVGGLIGRCGSNISRIRNESGAM-IKVYGGKGEQKHRHIQFGG-SAQQVALAKQRVDEY 318 (330)
Q Consensus 250 ~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~-I~i~~~~~~~~~r~v~I~G-t~~~v~~A~~~I~~~ 318 (330)
..+...|.||.+++|.+||++|++|++|++.||++ |.|.+ ++..|+|.| +.+++++|+.+|..+
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----ddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----DTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----CCCEEEEEECCHHHHHHHHHHHHhh
Confidence 45888999999999999999999999999999998 99984 247899999 799999999998643
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.82 E-value=1.5e-09 Score=80.29 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=47.6
Q ss_pred CCCCceEEEEEecCCccceeecccChhhhhhhhccCcE-EEEecCCCCCcceEEEEecCC
Q 020173 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKAT-IKIADAIARHEERVIIISSKD 103 (330)
Q Consensus 45 ~~~~~~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~-I~i~~~~~~~~ervi~I~G~~ 103 (330)
.....+...|.||.+.+|.+||++|++|++|+++|||+ |.|.+ ++..|.|.|.+
T Consensus 10 ~~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----ddG~V~I~g~~ 64 (91)
T 2cpq_A 10 QLAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----DTGTFRIYGES 64 (91)
T ss_dssp SSSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----TTTEEEEEESS
T ss_pred hccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----CCCEEEEEECC
Confidence 44567899999999999999999999999999999998 99975 34789999965
No 63
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=3.7e-08 Score=76.77 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=58.9
Q ss_pred cceEEEEEEccc-------cccceecCCCchHHHHHHHhCCeEEEeCCCC----------CCceeEEEEEc-CHHHHHHH
Q 020173 250 DYVTFEMLISES-------LVGGLIGRCGSNISRIRNESGAMIKVYGGKG----------EQKHRHIQFGG-SAQQVALA 311 (330)
Q Consensus 250 ~~~~~~v~IP~~-------~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~----------~~~~r~v~I~G-t~~~v~~A 311 (330)
...+.+|.||-+ ++|.|||++|.+||+|+++|||+|.|..... ..++-.|.|++ +++++++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 346778887765 7899999999999999999999999973311 11344677876 59999999
Q ss_pred HHHHHHHHHHHH
Q 020173 312 KQRVDEYIYSQL 323 (330)
Q Consensus 312 ~~~I~~~i~~~~ 323 (330)
+.+|.++|....
T Consensus 90 ~~~Ie~Ll~~v~ 101 (119)
T 2yqr_A 90 KKLCENLLQTVH 101 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhchH
Confidence 999999987643
No 64
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.75 E-value=2.3e-08 Score=79.49 Aligned_cols=72 Identities=24% Similarity=0.357 Sum_probs=60.6
Q ss_pred cceEEEEEEccc------cccceecCCCchHHHHHHHhCCeEEEeCCCC----------------CCceeEEEEEcC-HH
Q 020173 250 DYVTFEMLISES------LVGGLIGRCGSNISRIRNESGAMIKVYGGKG----------------EQKHRHIQFGGS-AQ 306 (330)
Q Consensus 250 ~~~~~~v~IP~~------~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~----------------~~~~r~v~I~Gt-~~ 306 (330)
...+.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..... ...+-.|.|++. .+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 357889999988 8999999999999999999999999986311 123567889995 99
Q ss_pred HHHHHHHHHHHHHHH
Q 020173 307 QVALAKQRVDEYIYS 321 (330)
Q Consensus 307 ~v~~A~~~I~~~i~~ 321 (330)
.++.|+.+|..+|..
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999854
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.65 E-value=4.5e-08 Score=77.80 Aligned_cols=73 Identities=21% Similarity=0.412 Sum_probs=58.3
Q ss_pred CceEEEEEecCC------ccceeecccChhhhhhhhccCcEEEEecCC----------------CCCcceEEEEecCCCC
Q 020173 48 QDVLFRIIVPSR------QIGKVIGKEGHRIQKIREETKATIKIADAI----------------ARHEERVIIISSKDND 105 (330)
Q Consensus 48 ~~~~~~i~vP~~------~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~----------------~~~~ervi~I~G~~~~ 105 (330)
..++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|...- ....+--|.|++..
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~-- 82 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANT-- 82 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESS--
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECC--
Confidence 468899999998 788999999999999999999999997521 01123457788864
Q ss_pred cchhHHHHHHHHHHHHHhh
Q 020173 106 NVVSDAENALQQIAALILK 124 (330)
Q Consensus 106 ~~~~~~~~A~~~i~~~i~~ 124 (330)
-+.+.+|+.+|..++..
T Consensus 83 --~e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 83 --MENVKKAVEQIRNILKQ 99 (131)
T ss_dssp --HHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHHhc
Confidence 36788999999998865
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=1.3e-07 Score=73.64 Aligned_cols=72 Identities=22% Similarity=0.124 Sum_probs=54.2
Q ss_pred ceEEEEEecCC-------ccceeecccChhhhhhhhccCcEEEEecCCC----------CCcceEEEEecCCCCcchhHH
Q 020173 49 DVLFRIIVPSR-------QIGKVIGKEGHRIQKIREETKATIKIADAIA----------RHEERVIIISSKDNDNVVSDA 111 (330)
Q Consensus 49 ~~~~~i~vP~~-------~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~----------~~~ervi~I~G~~~~~~~~~~ 111 (330)
.+..+|.||.+ ++|.|||++|.+||+|+++|||+|.|...-. ...+--|.|.+.+ .+.+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~----~e~i 86 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPK----PEGL 86 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESS----HHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCC----HHHH
Confidence 46778988875 6899999999999999999999999973210 0122357777654 2677
Q ss_pred HHHHHHHHHHHhh
Q 020173 112 ENALQQIAALILK 124 (330)
Q Consensus 112 ~~A~~~i~~~i~~ 124 (330)
.+|+.+|..++..
T Consensus 87 ~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 87 AAAKKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 8888888887754
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.27 E-value=9.3e-07 Score=70.62 Aligned_cols=75 Identities=19% Similarity=0.401 Sum_probs=53.5
Q ss_pred eEEEEEecCCc------cceeecccChhhhhhhhccCcEEEEecCCC-----------C------Ccc-eEEEEecCCCC
Q 020173 50 VLFRIIVPSRQ------IGKVIGKEGHRIQKIREETKATIKIADAIA-----------R------HEE-RVIIISSKDND 105 (330)
Q Consensus 50 ~~~~i~vP~~~------vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~-----------~------~~e-rvi~I~G~~~~ 105 (330)
++.+|.||.+. +|.|||++|.++|+|+++|||+|.|...-. + ..+ --|.|++.+..
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 56789999754 899999999999999999999999985310 0 011 14668875432
Q ss_pred c-chhHHHHHHHHHHHHHhh
Q 020173 106 N-VVSDAENALQQIAALILK 124 (330)
Q Consensus 106 ~-~~~~~~~A~~~i~~~i~~ 124 (330)
. -...+.+|+..|..++..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 1 112577888888887754
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.26 E-value=9e-07 Score=70.69 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=53.5
Q ss_pred eEEEEEEccc------cccceecCCCchHHHHHHHhCCeEEEeCCCCC------------------CceeEEEEEcC-H-
Q 020173 252 VTFEMLISES------LVGGLIGRCGSNISRIRNESGAMIKVYGGKGE------------------QKHRHIQFGGS-A- 305 (330)
Q Consensus 252 ~~~~v~IP~~------~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~------------------~~~r~v~I~Gt-~- 305 (330)
.+.+|.||.+ ++|.|||++|.++|+|+++|||+|.|-...+. ...--|.|++. +
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 3557777754 59999999999999999999999999964321 11236888884 3
Q ss_pred ----HHHHHHHHHHHHHHH
Q 020173 306 ----QQVALAKQRVDEYIY 320 (330)
Q Consensus 306 ----~~v~~A~~~I~~~i~ 320 (330)
..++.|+.+|..+|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 379999999998875
No 69
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.16 E-value=2.5e-06 Score=84.62 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=54.7
Q ss_pred eEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcC-HHHHHHHHHHHHHHH
Q 020173 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGS-AQQVALAKQRVDEYI 319 (330)
Q Consensus 252 ~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt-~~~v~~A~~~I~~~i 319 (330)
....|.||.+.+|.|||+||++||.|+++|||+|.|.+ +..|.|.|+ .+.+++|+.+|.+++
T Consensus 567 ~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d------~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 567 VVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD------EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS------SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred eEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC------CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999999984 357999997 789999999998764
No 70
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=98.11 E-value=1.4e-05 Score=62.63 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=61.8
Q ss_pred eEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHHHHHHHHH
Q 020173 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322 (330)
Q Consensus 252 ~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~~ 322 (330)
....|.|...+++.|+|++|+.|++|+..|++.|++..-. .++.-.|+|.|++..-..|+.+|..+..-.
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~-s~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG-PERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC-TTSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC-CCCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999863 346788999999999999999998876544
No 71
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.68 E-value=5.8e-05 Score=74.92 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCccccccccCCCcceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcc
Q 020173 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187 (330)
Q Consensus 108 ~~~~~~A~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~ 187 (330)
+..+.+++..|.+.+.+........ ....-.....+-||...++.|||++|++||.|+++|||+|.|.
T Consensus 536 L~~A~~g~~~I~~~m~~al~~~~~~----~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-------- 603 (630)
T 3u1k_A 536 IQQASVAKKEILQIMNKTISKPRAS----RKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-------- 603 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCCSS----CCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----hcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc--------
Confidence 3455666666777665543322110 1111234678899999999999999999999999999999985
Q ss_pred cCCCCCCcEEEEEcC-HHHHHHHHHHHHHHH
Q 020173 188 ASAHESDRVVQISGD-VPAVLNALVEIGNQL 217 (330)
Q Consensus 188 ~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i 217 (330)
++..|.|.|. .+.+.+|+.+|..++
T Consensus 604 -----d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 604 -----DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp -----SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred -----CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 3457888886 678889998886654
No 72
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.64 E-value=3.7e-05 Score=77.19 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=12.1
Q ss_pred eEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcC-HHHHHHHHHHHHHHHHHH
Q 020173 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGS-AQQVALAKQRVDEYIYSQ 322 (330)
Q Consensus 252 ~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt-~~~v~~A~~~I~~~i~~~ 322 (330)
....+.||.+.+|.|||+||.+||.|.++||++|.|.+ +..|.|.++ .+.++.|+.+|..++...
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d------dG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND------DGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp C-------------------------------------------------CCSCHHHHHHHHHC--------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC------CceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 45679999999999999999999999999999999984 256888776 899999999998887543
No 73
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.56 E-value=0.00028 Score=55.28 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=59.5
Q ss_pred EEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhh
Q 020173 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (330)
Q Consensus 144 ~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 219 (330)
.+.+.+....++.|+|++|+.|+.|+..|++.|++..-+. +..-.|+|.|++..-.+|..+|.++..-
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s--------~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP--------ERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT--------TSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC--------CCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999986431 2356799999999999999999988754
No 74
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.48 E-value=0.0001 Score=59.18 Aligned_cols=103 Identities=25% Similarity=0.314 Sum_probs=74.6
Q ss_pred EEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhhCCCC
Q 020173 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223 (330)
Q Consensus 144 ~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~ 223 (330)
.+.++|+...+|..||++|++|+.|.++.|-+|.+-.- +++ + ..+|...|.-.
T Consensus 37 r~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~----------s~d--------~------~~fI~naLsPA--- 89 (144)
T 2cxc_A 37 RLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEY----------SSD--------L------ERIVKNLFPGV--- 89 (144)
T ss_dssp EEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEEC----------CSS--------H------HHHHHHHSTTS---
T ss_pred EEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEc----------CCC--------H------HHHHHHhcCCc---
Confidence 78999999999999999999999999999999988643 222 1 22333333210
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCCcceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEe
Q 020173 224 QVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288 (330)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~ 288 (330)
...++...+ .+......+.||.+..+..|||+|++++-....||.+|.|.
T Consensus 90 ~V~~V~i~~---------------~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 90 KIESINVRE---------------RNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp CEEEEEEEE---------------ETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred eEEEEEEee---------------cCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 000000000 01346778999999999999999999999999999988776
No 75
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.47 E-value=6.1e-05 Score=60.44 Aligned_cols=104 Identities=17% Similarity=0.282 Sum_probs=72.5
Q ss_pred eEEEEEecCCccceeecccChhhhhhhhccCcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhhcCCCC
Q 020173 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSN 129 (330)
Q Consensus 50 ~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~~~~~ 129 (330)
-.+.+.|+...+|+.||++|++|+.|+++.|-+|+|-.-. + +-...+...+....
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s-------------~---------d~~~fI~naLsPA~--- 90 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYS-------------S---------DLERIVKNLFPGVK--- 90 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECC-------------S---------SHHHHHHHHSTTSC---
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcC-------------C---------CHHHHHHHhcCCce---
Confidence 5678999999999999999999999999999999986531 1 01111222221110
Q ss_pred ccccccccCCCcceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEe
Q 020173 130 SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179 (330)
Q Consensus 130 ~~~~~~~~~~~~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~ 179 (330)
-..-.. ....+.....+.||..+.+..||++|.+++-...-+|.++.|.
T Consensus 91 V~~V~i-~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 91 IESINV-RERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEEEEE-EEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred EEEEEE-eecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 000000 0001234788999999999999999999999999999877764
No 76
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.78 E-value=0.00083 Score=67.51 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCccccccccCCCcceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcc
Q 020173 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187 (330)
Q Consensus 108 ~~~~~~A~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~ 187 (330)
+..+.+++..|.+.+.+........ .....+....+-||....+.|||++|.+||.|.++||++|.+.
T Consensus 539 L~~A~~g~~~I~~~m~~al~~~r~~----~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~-------- 606 (726)
T 4aid_A 539 LAQAKEGRAHILGEMNKAMDAPRAD----VGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN-------- 606 (726)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCSS----CCSSCCC--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh----hcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE--------
Confidence 4555666677777765544322110 1111233568889999999999999999999999999999985
Q ss_pred cCCCCCCcEEEEEc-CHHHHHHHHHHHHHHHhhC
Q 020173 188 ASAHESDRVVQISG-DVPAVLNALVEIGNQLREN 220 (330)
Q Consensus 188 ~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~~~ 220 (330)
++..|.|.+ +.+...+|+..|..++.+.
T Consensus 607 -----ddG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 607 -----DDGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp ------------CCSCHHHHHHHHHC--------
T ss_pred -----CCceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 234567766 4888888999988887643
No 77
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=96.01 E-value=0.0023 Score=64.53 Aligned_cols=63 Identities=19% Similarity=0.358 Sum_probs=0.0
Q ss_pred eEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcC-HHHHHHHHHHHHHHHH
Q 020173 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGS-AQQVALAKQRVDEYIY 320 (330)
Q Consensus 252 ~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt-~~~v~~A~~~I~~~i~ 320 (330)
....+.||.+.++.+||++|.+|+.|.++||+.|.|.. +..|.|++. .+.++.|..+|..++.
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~------dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED------DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC------CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 55678999999999999999999999999999998884 356777765 6777888887776653
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.96 E-value=0.0094 Score=51.93 Aligned_cols=97 Identities=24% Similarity=0.270 Sum_probs=65.5
Q ss_pred CccceeecccChhhhhh-hhccCcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhhcCCCCcccccccc
Q 020173 59 RQIGKVIGKEGHRIQKI-REETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAA 137 (330)
Q Consensus 59 ~~vg~IIGk~G~~Ik~I-~~~tg~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~~~~~~~~~~~~~ 137 (330)
+-+|+.||++|++|+.| ++-.|=+|+|-.-. + +...-|...+....-..- ..
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s-------------~---------dp~~fi~nalsPA~V~~V---~i-- 178 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD-------------D---------DPARFVANALSPAKVVSV---SV-- 178 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC-------------S---------SHHHHHHHHTTTSCCSEE---EE--
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEec-------------C---------CHHHHHHhccCCcceEEE---EE--
Confidence 44899999999999999 67778888886531 1 011112222211110000 00
Q ss_pred CCCcceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCC
Q 020173 138 GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182 (330)
Q Consensus 138 ~~~~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~ 182 (330)
.........+.||..+.+..||++|.|++.-..-||.+|.|....
T Consensus 179 ~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 179 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp EETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred EcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 000123789999999999999999999999999999999997643
No 79
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.68 E-value=0.013 Score=54.03 Aligned_cols=97 Identities=23% Similarity=0.290 Sum_probs=66.7
Q ss_pred CccceeecccChhhhhhhhcc-CcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhhcCCCCcccccccc
Q 020173 59 RQIGKVIGKEGHRIQKIREET-KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAA 137 (330)
Q Consensus 59 ~~vg~IIGk~G~~Ik~I~~~t-g~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~~~~~~~~~~~~~ 137 (330)
+-+|+.||++|.+|+.|.++. |=+|+|-.- ++ +-...|...+....-..-. ..
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~-------------s~---------dp~~fi~nalsPA~V~~V~--~~-- 302 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDY-------------DD---------DPARFVANALSPAKVVSVS--VI-- 302 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC-------------CS---------SHHHHHHHHTTTSCCSEEE--EE--
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEc-------------CC---------CHHHHHHHhcCCcceeEEE--EE--
Confidence 458999999999999999999 888887653 11 0111222222111100000 00
Q ss_pred CCCcceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCC
Q 020173 138 GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182 (330)
Q Consensus 138 ~~~~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~ 182 (330)
........+.||..+.+..||++|.+++-...-||.+|.|....
T Consensus 303 -~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 303 -DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp -ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred -cCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 01123789999999999999999999999999999999997643
No 80
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.57 E-value=0.015 Score=50.57 Aligned_cols=105 Identities=20% Similarity=0.275 Sum_probs=71.6
Q ss_pred EEEEEeec-----cccceecCCCChhHHHH-HHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHH
Q 020173 144 TIRLLIAG-----SQAGCLIGMSGQNIEKL-RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217 (330)
Q Consensus 144 ~~~llip~-----~~~g~iIG~~G~~Ik~I-~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i 217 (330)
..++.|-+ .-+|..||++|++|+.| ++..|-+|.|-.- +++ ...+|...|
T Consensus 113 R~KiAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~----------s~d--------------p~~fi~nal 168 (251)
T 2asb_A 113 RSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDY----------DDD--------------PARFVANAL 168 (251)
T ss_dssp EEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC----------CSS--------------HHHHHHHHT
T ss_pred eeEEEEEcCCCCCCHHHHHhCCCchHHHHHHHHhCCCeEEEEEe----------cCC--------------HHHHHHhcc
Confidence 34555554 23799999999999999 7888999988743 233 122333333
Q ss_pred hhCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCC
Q 020173 218 RENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK 291 (330)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~ 291 (330)
.-..... +. . .........+.||.+..+.-|||+|++++--...||.+|.|....
T Consensus 169 sPA~V~~---V~--------------i--~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 169 SPAKVVS---VS--------------V--IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp TTSCCSE---EE--------------E--EETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred CCcceEE---EE--------------E--EcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 2111000 00 0 001225688999999999999999999999999999999998643
No 81
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.36 E-value=0.028 Score=51.74 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=72.5
Q ss_pred EEEEEeec-----cccceecCCCChhHHHHHHHh-CCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHH
Q 020173 144 TIRLLIAG-----SQAGCLIGMSGQNIEKLRNSS-GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217 (330)
Q Consensus 144 ~~~llip~-----~~~g~iIG~~G~~Ik~I~~~s-ga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i 217 (330)
..++.|-+ .-+|..||++|++|+.|.++. |-+|.|-.- +++ + ..+|...+
T Consensus 236 RaKIAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~----------s~d--------p------~~fi~nal 291 (366)
T 1k0r_A 236 RSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDY----------DDD--------P------ARFVANAL 291 (366)
T ss_dssp EEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC----------CSS--------H------HHHHHHHT
T ss_pred eEEEEEEeCCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEEc----------CCC--------H------HHHHHHhc
Confidence 45666655 357999999999999999998 888888642 223 1 22333333
Q ss_pred hhCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCC
Q 020173 218 RENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG 290 (330)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~ 290 (330)
.-..... +. -.........+.||.+..+..|||+|++++-....||.+|.|...
T Consensus 292 sPA~V~~---V~----------------~~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 292 SPAKVVS---VS----------------VIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp TTSCCSE---EE----------------EEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred CCcceeE---EE----------------EEcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 2111000 00 000123578899999999999999999999999999999999864
No 82
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=95.24 E-value=0.0021 Score=64.99 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=21.2
Q ss_pred EEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcC-HHHHHHHHHHHHHHH
Q 020173 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGS-AQQVALAKQRVDEYI 319 (330)
Q Consensus 253 ~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt-~~~v~~A~~~I~~~i 319 (330)
...|.||.+.+|.+||++|.+||.|.++||+.|.|.. +..|.|++. ....+.|+..|..+.
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC--------------CCCBSSHHHHCC---------
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEecC------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 3468899999999999999999999999999999884 356788775 677777877776654
No 83
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.42 E-value=0.047 Score=49.98 Aligned_cols=96 Identities=26% Similarity=0.287 Sum_probs=64.9
Q ss_pred CccceeecccChhhhhhhhcc-CcEEEEecCCCCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhhcCCCCcccccccc
Q 020173 59 RQIGKVIGKEGHRIQKIREET-KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAA 137 (330)
Q Consensus 59 ~~vg~IIGk~G~~Ik~I~~~t-g~~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~~~~~~~~~~~~~ 137 (330)
+-+|+.||.+|.+|+.|..+. |=+|+|-.- ++ +-...|...|....-.. +.-
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~-------------s~---------d~~~fi~nal~Pa~v~~-----v~~ 297 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKW-------------SD---------DPKQLIANALAPATVIE-----VEI 297 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEEC-------------CS---------SHHHHHHHHTCSSCCSE-----EEE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEec-------------CC---------CHHHHHHHhcCccEEEE-----EEE
Confidence 358999999999999999998 777777543 11 11112222221110000 000
Q ss_pred CCCcceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCC
Q 020173 138 GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181 (330)
Q Consensus 138 ~~~~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~ 181 (330)
.........+.||..+.+..||++|.|++.-..-||.+|.|...
T Consensus 298 ~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 298 LDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp EETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred EcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 00112378999999999999999999999999999999998753
No 84
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=93.94 E-value=0.089 Score=48.12 Aligned_cols=103 Identities=18% Similarity=0.249 Sum_probs=69.2
Q ss_pred EEEEEeecc-----ccceecCCCChhHHHHHHHh-CCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHH
Q 020173 144 TIRLLIAGS-----QAGCLIGMSGQNIEKLRNSS-GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217 (330)
Q Consensus 144 ~~~llip~~-----~~g~iIG~~G~~Ik~I~~~s-ga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i 217 (330)
..++.|-+. -+|..||.+|.+|+.+.++. |-+|.+-.- +++ + ..+|...|
T Consensus 232 R~KiAV~s~d~~iDpvGacvg~~G~ri~~i~~el~ge~Idii~~----------s~d--------~------~~fi~nal 287 (344)
T 1hh2_P 232 RTKVAVASNDPNVDPIGACIGEGGSRIAAILKELKGEKLDVLKW----------SDD--------P------KQLIANAL 287 (344)
T ss_dssp EEEEEEEESSTTSCHHHHHHCTTSTTHHHHHHHTTTCEEEEEEC----------CSS--------H------HHHHHHHT
T ss_pred ccceeEEccCCCccccceeeccCCcEeHHHHHHhCCCeeeEEec----------CCC--------H------HHHHHHhc
Confidence 345555432 47999999999999999887 777777642 222 1 22333333
Q ss_pred hhCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcceEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeC
Q 020173 218 RENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289 (330)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~ 289 (330)
.-.... ++. . .........+.||.+..+.-|||+|++++--...||.+|.|..
T Consensus 288 ~Pa~v~---~v~--------------~--~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 288 APATVI---EVE--------------I--LDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp CSSCCS---EEE--------------E--EETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CccEEE---EEE--------------E--EcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 211000 000 0 0012357889999999999999999999999999999999874
No 85
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.42 E-value=0.013 Score=59.33 Aligned_cols=46 Identities=37% Similarity=0.630 Sum_probs=16.7
Q ss_pred EEEEecCCccceeecccChhhhhhhhccCcEEEEecCCCCCcceEEEEecCC
Q 020173 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103 (330)
Q Consensus 52 ~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervi~I~G~~ 103 (330)
..|.||.+..|.+||++|.+|+.|.++||+.|+|.+ +..+.|++.+
T Consensus 600 ~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------dG~v~Is~~~ 645 (757)
T 1e3p_A 600 ITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------DGTIYIGAAD 645 (757)
T ss_dssp CCC------------------CTTCCCCCSCC--------------CCCBSS
T ss_pred EEEEEChHHeehcccccceeeehhhHhhCCEEEecC------CceEEEecCC
Confidence 356789999999999999999999999999999974 3557777764
No 86
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=91.96 E-value=0.061 Score=54.22 Aligned_cols=94 Identities=21% Similarity=0.240 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCccccccccCCCcceEEEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcc
Q 020173 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187 (330)
Q Consensus 108 ~~~~~~A~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~ 187 (330)
+..+.+++..|.+.+.+......... ...-+....+-||....+.+||++|.+|+.|.+++|+.|.+.
T Consensus 529 l~~A~~~~~~I~~~m~~al~~~~~~~----~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~-------- 596 (723)
T 3cdi_A 529 LNQAKGARLHILGVMEQAINAPRGDI----SEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE-------- 596 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHCC------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhc----cccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEec--------
Confidence 34455566666666655432211100 011223567788999999999999999999999999999874
Q ss_pred cCCCCCCcEEEEEc-CHHHHHHHHHHHHHHHh
Q 020173 188 ASAHESDRVVQISG-DVPAVLNALVEIGNQLR 218 (330)
Q Consensus 188 ~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~ 218 (330)
++..+.|.+ +...+.+|...|..++.
T Consensus 597 -----~dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 597 -----DDGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp --------------------------------
T ss_pred -----CCccEEEecCCHHHHHHHHHHHHHHhh
Confidence 234566655 45666677776666553
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=76.37 E-value=0.9 Score=36.40 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=25.4
Q ss_pred EEEEEecCCccceeecccChhhhhhhhccC
Q 020173 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETK 80 (330)
Q Consensus 51 ~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg 80 (330)
++.+.+-....|.+|||.|.++..|+--+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 466667788999999999999999996653
No 88
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=74.67 E-value=8.1 Score=28.89 Aligned_cols=59 Identities=15% Similarity=0.346 Sum_probs=39.8
Q ss_pred ecccChhhhhhhhccCcEEEEecCCCCC-----------------cceEEEEecCCCCcchhHHHHHHHHHHHHHhhc
Q 020173 65 IGKEGHRIQKIREETKATIKIADAIARH-----------------EERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (330)
Q Consensus 65 IGk~G~~Ik~I~~~tg~~I~i~~~~~~~-----------------~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~ 125 (330)
=|+||.++++. +|.+++.++-....- .+.+++|.....-.+..|-.+|+.++.++|.+.
T Consensus 23 sGpGGQnVNKv--~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a 98 (108)
T 2jva_A 23 QGAGGQNVNKV--SSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRADALLRLSELIVNA 98 (108)
T ss_dssp TTCSSSSSCCC--CCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCC--cceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHHHHHHHHHHHHHHH
Confidence 48999998874 455666653211011 144688887777666788899999999888653
No 89
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=72.60 E-value=1.7 Score=34.75 Aligned_cols=68 Identities=10% Similarity=-0.074 Sum_probs=42.7
Q ss_pred eEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHHHHHHHHHH
Q 020173 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323 (330)
Q Consensus 252 ~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~~~ 323 (330)
.++.|.|-.+-.|.+|||.|++++.|+-.+...++-.. . -.-.+-+-|--+.-+.....+...++...
T Consensus 33 ~~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn~~~---~-~~V~LDve~YRerReetL~~lA~~~A~kV 100 (152)
T 2pt7_G 33 GVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPTY---G-YSIRLEISTFLQNQEKVMDTQLQSVIMTV 100 (152)
T ss_dssp TEEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHHHHH---S-CEEEEEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCcceEECCCCcchHHHHHHHHHHhhhcC---C-ceEEEEhHHhHHHHHHHHHHHHHHHHHHH
Confidence 35677788889999999999999999876633322211 1 12234455556666666555555555443
No 90
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=72.53 E-value=0.88 Score=33.17 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=23.9
Q ss_pred EEEEEecCCccceeecccChhhhhhhhc
Q 020173 51 LFRIIVPSRQIGKVIGKEGHRIQKIREE 78 (330)
Q Consensus 51 ~~~i~vP~~~vg~IIGk~G~~Ik~I~~~ 78 (330)
..++.|....-|.|||++|..|++|+++
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4678888899999999999999988754
No 91
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=62.71 E-value=3 Score=30.31 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=22.6
Q ss_pred EEEEEEccccccceecCCCchHHHHHHH
Q 020173 253 TFEMLISESLVGGLIGRCGSNISRIRNE 280 (330)
Q Consensus 253 ~~~v~IP~~~vg~IIGk~G~~Ik~i~~~ 280 (330)
.+++.|-...-|.|||++|+.|++|+..
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4567777788899999999999887553
No 92
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=58.54 E-value=13 Score=28.02 Aligned_cols=59 Identities=19% Similarity=0.341 Sum_probs=38.8
Q ss_pred ecccChhhhhhhhccCcEEEEecCC------------------CCCcceEEEEecCCCCcchhHHHHHHHHHHHHHhhc
Q 020173 65 IGKEGHRIQKIREETKATIKIADAI------------------ARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (330)
Q Consensus 65 IGk~G~~Ik~I~~~tg~~I~i~~~~------------------~~~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~ 125 (330)
=|+||.++++.. |.+++.++-.. .-+.+-+++|.....-.+..|-.+|+.++.++|.+.
T Consensus 30 sGpGGQnVNKv~--SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a 106 (112)
T 1j26_A 30 SGPGGQNVNKVN--SKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAEA 106 (112)
T ss_dssp CCSSSSCCSSCC--CEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCc--ceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHHHHHHHHHHHHHHHHh
Confidence 489999998754 34444443221 001234588888777666788899999999988654
No 93
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=55.10 E-value=21 Score=27.88 Aligned_cols=60 Identities=20% Similarity=0.337 Sum_probs=40.0
Q ss_pred ecccChhhhhhhhccCcEEEEecC---CCC--------------CcceEEEEecCCCCcchhHHHHHHHHHHHHHhhcC
Q 020173 65 IGKEGHRIQKIREETKATIKIADA---IAR--------------HEERVIIISSKDNDNVVSDAENALQQIAALILKDD 126 (330)
Q Consensus 65 IGk~G~~Ik~I~~~tg~~I~i~~~---~~~--------------~~ervi~I~G~~~~~~~~~~~~A~~~i~~~i~~~~ 126 (330)
=|+||.++++ -+|.|++.++-. .|. +.+..++|.....-.+..|-.+|+..+.++|....
T Consensus 23 sGpGGQnVNK--v~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~~A~~rL~~~l~~a~ 99 (140)
T 4dh9_Y 23 QGAGGQHVNK--TSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKELT 99 (140)
T ss_dssp CSSSSHHHHT--TCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccc--ccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHHHHHHHHHHHHHHhc
Confidence 4999999995 467777776321 111 11234777776665667788999999998886543
No 94
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=51.85 E-value=30 Score=29.31 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=44.3
Q ss_pred EEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHH
Q 020173 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRV 315 (330)
Q Consensus 254 ~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I 315 (330)
+-+.++..++.+++|+++..+..|.+.+++.|-+-.+ -.|=|.++......+...|
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~N------G~IWi~~~~~~~~~~~~ai 193 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQN------GLIWVNGDRRKVSIAEEAI 193 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTT------SEEEEESCHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEECC------cEEEEeCCchhHHHHHHHH
Confidence 4568999999999999999999999999999999853 3466888876555544444
No 95
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=42.01 E-value=5.4 Score=34.01 Aligned_cols=33 Identities=15% Similarity=0.373 Sum_probs=26.6
Q ss_pred EEEEEecCCccceeecccChhhhhhhhccCcEE
Q 020173 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83 (330)
Q Consensus 51 ~~~i~vP~~~vg~IIGk~G~~Ik~I~~~tg~~I 83 (330)
.+.|.+.....|.+||+.|.++..||.-++.-+
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~v 125 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVV 125 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHH
Confidence 455566677899999999999999998777444
No 96
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=41.73 E-value=6.7 Score=33.67 Aligned_cols=29 Identities=21% Similarity=0.420 Sum_probs=24.3
Q ss_pred EEEEEecCCccceeecccChhhhhhhhcc
Q 020173 51 LFRIIVPSRQIGKVIGKEGHRIQKIREET 79 (330)
Q Consensus 51 ~~~i~vP~~~vg~IIGk~G~~Ik~I~~~t 79 (330)
..+|.|....-|.|||++|..|++|+...
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 35777888899999999999999887553
No 97
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=39.74 E-value=9.8 Score=32.37 Aligned_cols=68 Identities=9% Similarity=0.120 Sum_probs=42.7
Q ss_pred eEEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEcCHHHHHHHHHHHHHHHHH
Q 020173 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321 (330)
Q Consensus 252 ~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~Gt~~~v~~A~~~I~~~i~~ 321 (330)
..+.|.|..+-.|.+||+.|++++.||-.+...++-.. .....-.|-|-|--+.-+.....+...+..
T Consensus 92 ~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~--~~~~rv~LDi~~YR~rR~e~L~~lA~~~A~ 159 (225)
T 3gku_A 92 KEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSS--SDYIRVKLDTENYRERRKETLETLAKNIAY 159 (225)
T ss_dssp TEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTC--SSCCEEEEESTTHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcC--CCceEEEEecchHHHHHHHHHHHHHHHHHH
Confidence 34567777778999999999999999988875443321 111123455566655555555544444443
No 98
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.15 E-value=8 Score=32.56 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=22.6
Q ss_pred EEEEecCCccceeecccChhhhhhhhc
Q 020173 52 FRIIVPSRQIGKVIGKEGHRIQKIREE 78 (330)
Q Consensus 52 ~~i~vP~~~vg~IIGk~G~~Ik~I~~~ 78 (330)
.++.|....-|.|||++|..|++|+..
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 467778888999999999999987643
No 99
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=37.94 E-value=8.8 Score=33.04 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=24.7
Q ss_pred EEEEEecCCccceeecccChhhhhhhhcc
Q 020173 51 LFRIIVPSRQIGKVIGKEGHRIQKIREET 79 (330)
Q Consensus 51 ~~~i~vP~~~vg~IIGk~G~~Ik~I~~~t 79 (330)
..+|.|....-|.|||++|..|++|+...
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 46778888999999999999999988653
No 100
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=37.78 E-value=73 Score=26.94 Aligned_cols=57 Identities=21% Similarity=0.168 Sum_probs=44.5
Q ss_pred EEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCCCCceeEEEEEc-CHHHHHHHHHHHH
Q 020173 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGG-SAQQVALAKQRVD 316 (330)
Q Consensus 254 ~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~~r~v~I~G-t~~~v~~A~~~I~ 316 (330)
+-+.++..++..++|++|..+..|.+.+++.|-+-.+ ..|-|.+ ++..+..+...|.
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~N------G~IWi~~~~~~~~~~~~~ai~ 207 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVARN------GRIHLECPNEDLEAIAVMAIK 207 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEETT------TEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeCC------CEEEEecCCHHHHHHHHHHHH
Confidence 4578999999999999999999999899999999853 4566775 4656655554444
No 101
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=36.27 E-value=6.8 Score=33.35 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=24.6
Q ss_pred EEEEEecCCccceeecccChhhhhhhhcc
Q 020173 51 LFRIIVPSRQIGKVIGKEGHRIQKIREET 79 (330)
Q Consensus 51 ~~~i~vP~~~vg~IIGk~G~~Ik~I~~~t 79 (330)
..++.|....-|.|||++|..|++|+.+.
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 46778888999999999999999987543
No 102
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=34.61 E-value=17 Score=31.20 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=22.8
Q ss_pred EEEEEEccccccceecCCCchHHHHHHH
Q 020173 253 TFEMLISESLVGGLIGRCGSNISRIRNE 280 (330)
Q Consensus 253 ~~~v~IP~~~vg~IIGk~G~~Ik~i~~~ 280 (330)
.+++.|-...-|.|||++|+.|++|+..
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 3567777788899999999999987544
No 103
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=33.13 E-value=21 Score=31.55 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=28.0
Q ss_pred ceEEEEEEccc-cccceecCCCchHHHH--------HHHhCCeEEEe
Q 020173 251 YVTFEMLISES-LVGGLIGRCGSNISRI--------RNESGAMIKVY 288 (330)
Q Consensus 251 ~~~~~v~IP~~-~vg~IIGk~G~~Ik~i--------~~~tga~I~i~ 288 (330)
.....+.|..+ +-+.|||++|++||+| ++..|++|.+.
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 35566677776 4489999999999986 45577777665
No 104
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=32.95 E-value=1.1e+02 Score=25.63 Aligned_cols=59 Identities=22% Similarity=0.197 Sum_probs=43.4
Q ss_pred EEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHH
Q 020173 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216 (330)
Q Consensus 145 ~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~ 216 (330)
.-+-++...+.+++|+++..+..|.+.+++.|-+= .+..|=|.+.......+...|...
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG-------------~NG~IWi~~~~~~~~~~~~ai~~~ 196 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG-------------QNGLIWVNGDRRKVSIAEEAIYLI 196 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC-------------TTSEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE-------------CCcEEEEeCCchhHHHHHHHHHHH
Confidence 34567778888999999999999999999999872 234577888877555455445443
No 105
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.38 E-value=16 Score=30.67 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=21.2
Q ss_pred EEEEEccccccceecCCCchHHHHHH
Q 020173 254 FEMLISESLVGGLIGRCGSNISRIRN 279 (330)
Q Consensus 254 ~~v~IP~~~vg~IIGk~G~~Ik~i~~ 279 (330)
.++.|-...-|.|||++|+.|++|+.
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHH
Confidence 45667677789999999999998754
No 106
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=31.47 E-value=21 Score=30.68 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=23.7
Q ss_pred eEEEEEEccccccceecCCCchHHHHHHH
Q 020173 252 VTFEMLISESLVGGLIGRCGSNISRIRNE 280 (330)
Q Consensus 252 ~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~ 280 (330)
..+++.|-...-|.|||++|+.|++|+..
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 34677777788899999999999998654
No 107
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=31.34 E-value=96 Score=22.51 Aligned_cols=48 Identities=10% Similarity=0.019 Sum_probs=37.2
Q ss_pred CCchHHHHHHHhCCeEEEeCCCC------CCceeEEEEEcCHHHHHHHHHHHHH
Q 020173 270 CGSNISRIRNESGAMIKVYGGKG------EQKHRHIQFGGSAQQVALAKQRVDE 317 (330)
Q Consensus 270 ~G~~Ik~i~~~tga~I~i~~~~~------~~~~r~v~I~Gt~~~v~~A~~~I~~ 317 (330)
..--|.+|.+.+|..++|-...- .-+.-+|.+.|..++++.|...+.+
T Consensus 34 ~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 87 (106)
T 3dhx_A 34 DAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQE 87 (106)
T ss_dssp TCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 34589999999999999986431 1234578899999999999888764
No 108
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=31.05 E-value=7.2 Score=32.74 Aligned_cols=27 Identities=33% Similarity=0.672 Sum_probs=21.9
Q ss_pred EEEEecCCccceeecccChhhhhhhhc
Q 020173 52 FRIIVPSRQIGKVIGKEGHRIQKIREE 78 (330)
Q Consensus 52 ~~i~vP~~~vg~IIGk~G~~Ik~I~~~ 78 (330)
.++.|....-|.|||++|+.|++|+.+
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 456667788899999999999987743
No 109
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=30.73 E-value=7.9 Score=33.30 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=24.9
Q ss_pred eEEEEEecCCccceeecccChhhhhhhhcc
Q 020173 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREET 79 (330)
Q Consensus 50 ~~~~i~vP~~~vg~IIGk~G~~Ik~I~~~t 79 (330)
...++.|....-|.|||++|..|++|++..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 346777888899999999999999988653
No 110
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.78 E-value=19 Score=30.67 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=23.8
Q ss_pred eEEEEEEccccccceecCCCchHHHHHHH
Q 020173 252 VTFEMLISESLVGGLIGRCGSNISRIRNE 280 (330)
Q Consensus 252 ~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~ 280 (330)
...++.|-...-|.|||++|+.|++|+..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 34677888888899999999999987554
No 111
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=29.75 E-value=15 Score=32.49 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=22.7
Q ss_pred ceEEEEEecC-CccceeecccChhhhhhhh
Q 020173 49 DVLFRIIVPS-RQIGKVIGKEGHRIQKIRE 77 (330)
Q Consensus 49 ~~~~~i~vP~-~~vg~IIGk~G~~Ik~I~~ 77 (330)
.+...|+|.. ++.+-|||++|+.||+|..
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~ 268 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGK 268 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHH
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHH
Confidence 3566777776 4688899999999998764
No 112
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=29.50 E-value=11 Score=31.97 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=22.3
Q ss_pred EEEEecCCccceeecccChhhhhhhhcc
Q 020173 52 FRIIVPSRQIGKVIGKEGHRIQKIREET 79 (330)
Q Consensus 52 ~~i~vP~~~vg~IIGk~G~~Ik~I~~~t 79 (330)
.+|.|....-|.|||++|..|++|+++-
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~l 99 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKINV 99 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHHH
Confidence 4556677788999999999999987654
No 113
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=28.53 E-value=8.3 Score=32.98 Aligned_cols=27 Identities=33% Similarity=0.672 Sum_probs=22.1
Q ss_pred EEEEecCCccceeecccChhhhhhhhc
Q 020173 52 FRIIVPSRQIGKVIGKEGHRIQKIREE 78 (330)
Q Consensus 52 ~~i~vP~~~vg~IIGk~G~~Ik~I~~~ 78 (330)
.+|.|....-|.|||++|..|++|+.+
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 456677788899999999999988753
No 114
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=27.87 E-value=13 Score=31.98 Aligned_cols=27 Identities=41% Similarity=0.650 Sum_probs=21.9
Q ss_pred EEEEecCCccceeecccChhhhhhhhc
Q 020173 52 FRIIVPSRQIGKVIGKEGHRIQKIREE 78 (330)
Q Consensus 52 ~~i~vP~~~vg~IIGk~G~~Ik~I~~~ 78 (330)
.+|.|....-|.|||++|+.|++|+..
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 445666778899999999999988754
No 115
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=25.81 E-value=1.9e+02 Score=24.33 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=43.4
Q ss_pred EEEEeeccccceecCCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCCcEEEEEc-CHHHHHHHHHHHHHHHh
Q 020173 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG-DVPAVLNALVEIGNQLR 218 (330)
Q Consensus 145 ~~llip~~~~g~iIG~~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~ 218 (330)
+-+-++...+..++|+++..+..|.+++++.|-+= .+..|-|.+ +......+...|...=.
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG-------------~NG~IWi~~~~~~~~~~~~~ai~~~e~ 211 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVA-------------RNGRIHLECPNEDLEAIAVMAIKIIDE 211 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEE-------------TTTEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEe-------------CCCEEEEecCCHHHHHHHHHHHHHHHh
Confidence 45567788899999999999999998999999873 234567776 45555545545444433
No 116
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=25.31 E-value=92 Score=22.28 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=42.5
Q ss_pred EEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCC----C--CceeEEEEEcCHHHHHHHHHHHHH
Q 020173 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG----E--QKHRHIQFGGSAQQVALAKQRVDE 317 (330)
Q Consensus 253 ~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~----~--~~~r~v~I~Gt~~~v~~A~~~I~~ 317 (330)
..++..+.+.+ ..--|.+|.+.++..+.|-...- + -..-+|.+.|..++++.|...+.+
T Consensus 25 lv~l~f~g~~~------~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 89 (101)
T 2qrr_A 25 LVRMEFTGATV------DAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRE 89 (101)
T ss_dssp EEEEEECTTSC------SSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCc------CchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 56666665532 45679999999999999886531 1 135567789999999988877754
No 117
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.21 E-value=20 Score=30.76 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=23.7
Q ss_pred eEEEEEEccccccceecCCCchHHHHHHH
Q 020173 252 VTFEMLISESLVGGLIGRCGSNISRIRNE 280 (330)
Q Consensus 252 ~~~~v~IP~~~vg~IIGk~G~~Ik~i~~~ 280 (330)
...++.|-...-|.|||++|+.|++|+..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 34667777788899999999999998665
No 118
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=24.14 E-value=19 Score=30.20 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=24.6
Q ss_pred EEEEEccccccceecCCCchHHHHHH----HhCCeEEEe
Q 020173 254 FEMLISESLVGGLIGRCGSNISRIRN----ESGAMIKVY 288 (330)
Q Consensus 254 ~~v~IP~~~vg~IIGk~G~~Ik~i~~----~tga~I~i~ 288 (330)
+++.|-...-|.|||++|+.|++|+. .++..+.+.
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I~ 101 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN 101 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCCB
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEEE
Confidence 34556666778999999999998754 466544433
No 119
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=23.93 E-value=29 Score=30.54 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=25.1
Q ss_pred EEEEEccc-cccceecCCCchHHHH--------HHHhCCeEEEe
Q 020173 254 FEMLISES-LVGGLIGRCGSNISRI--------RNESGAMIKVY 288 (330)
Q Consensus 254 ~~v~IP~~-~vg~IIGk~G~~Ik~i--------~~~tga~I~i~ 288 (330)
..+.|..+ +-+.|||++|++||+| ++..|++|.+.
T Consensus 232 ~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l~ 275 (301)
T 1wf3_A 232 AILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLD 275 (301)
T ss_dssp EEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred EEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEEE
Confidence 34555544 5599999999999975 55677777664
No 120
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=23.15 E-value=29 Score=29.73 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=20.2
Q ss_pred EEEEccccccceecCCCchHHHHHHH
Q 020173 255 EMLISESLVGGLIGRCGSNISRIRNE 280 (330)
Q Consensus 255 ~v~IP~~~vg~IIGk~G~~Ik~i~~~ 280 (330)
++.|-...-|.|||++|+.|++|+..
T Consensus 65 ~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 65 AVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp CCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEeCCCcceecCCchHHHHHHHH
Confidence 45555567799999999999988654
No 121
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=22.32 E-value=57 Score=26.35 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=29.0
Q ss_pred eEEEEEEccccccceecCCCchHHHH-HHHh--------CC---eEEEeC
Q 020173 252 VTFEMLISESLVGGLIGRCGSNISRI-RNES--------GA---MIKVYG 289 (330)
Q Consensus 252 ~~~~v~IP~~~vg~IIGk~G~~Ik~i-~~~t--------ga---~I~i~~ 289 (330)
....+.||+++.|.+|| .+|+++ .+++ |+ .+.+..
T Consensus 7 l~~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~ 53 (187)
T 1go3_E 7 IADVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKD 53 (187)
T ss_dssp EEEEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEE
T ss_pred EEEEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEee
Confidence 55689999999999999 699995 9988 87 566654
No 122
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=22.14 E-value=21 Score=30.47 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=20.5
Q ss_pred EEEEEccccccceecCCCchHHHHHH
Q 020173 254 FEMLISESLVGGLIGRCGSNISRIRN 279 (330)
Q Consensus 254 ~~v~IP~~~vg~IIGk~G~~Ik~i~~ 279 (330)
+++.|-...-|.|||++|+.|++|+.
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~ 89 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRK 89 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHH
Confidence 45566666778999999999998754
No 123
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=22.01 E-value=26 Score=29.56 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=20.5
Q ss_pred EEEEEccccccceecCCCchHHHHHHH
Q 020173 254 FEMLISESLVGGLIGRCGSNISRIRNE 280 (330)
Q Consensus 254 ~~v~IP~~~vg~IIGk~G~~Ik~i~~~ 280 (330)
+++.|-...-|.|||++|+.|++|+..
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHH
Confidence 345555566789999999999988654
No 124
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=21.97 E-value=1.2e+02 Score=21.64 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=42.2
Q ss_pred EEEEEEccccccceecCCCchHHHHHHHhCCeEEEeCCCC----C--CceeEEEEEcCHHHHHHHHHHHHH
Q 020173 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG----E--QKHRHIQFGGSAQQVALAKQRVDE 317 (330)
Q Consensus 253 ~~~v~IP~~~vg~IIGk~G~~Ik~i~~~tga~I~i~~~~~----~--~~~r~v~I~Gt~~~v~~A~~~I~~ 317 (330)
.+++..+.+.+ ..--|.+|.+.+|..+.|-...- + -..-+|.+.|..++++.|...+.+
T Consensus 25 lv~l~f~g~~~------~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 89 (100)
T 2qsw_A 25 IVRLLFHGEQA------KLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRK 89 (100)
T ss_dssp EEEEEEESCSC------SSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCc------CchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHH
Confidence 45666555532 45679999999999999886531 1 235567789999999988877754
No 125
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=20.81 E-value=2.7e+02 Score=20.81 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=20.5
Q ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHhhC
Q 020173 193 SDRVVQISGDVPAVLNALVEIGNQLREN 220 (330)
Q Consensus 193 ~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 220 (330)
.+-.+.|+|-+++|.+-+..=.+.+...
T Consensus 122 n~l~i~itgvpeqvrkelakeaerl~~e 149 (170)
T 4hhu_A 122 NRLVIVITGVPEQVRKELAKEAERLKAE 149 (170)
T ss_dssp SEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 4557899999999998766555555543
Done!