Query 020174
Match_columns 330
No_of_seqs 153 out of 1513
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 07:37:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 7.4E-65 1.6E-69 452.8 28.4 266 14-309 3-268 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 4.7E-63 1E-67 441.2 29.5 281 16-309 6-289 (300)
3 KOG1575 Voltage-gated shaker-l 100.0 1E-58 2.2E-63 420.8 28.5 285 6-315 4-335 (336)
4 COG0667 Tas Predicted oxidored 100.0 1.9E-58 4.2E-63 426.4 28.9 266 14-306 1-310 (316)
5 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.8E-57 4E-62 412.5 30.5 254 26-308 1-255 (267)
6 PRK10625 tas putative aldo-ket 100.0 7.8E-56 1.7E-60 416.2 29.0 282 14-306 1-340 (346)
7 TIGR01293 Kv_beta voltage-depe 100.0 8.7E-56 1.9E-60 411.2 28.9 263 16-303 1-316 (317)
8 PRK09912 L-glyceraldehyde 3-ph 100.0 1.6E-55 3.4E-60 413.7 30.3 270 13-306 12-334 (346)
9 PRK11565 dkgA 2,5-diketo-D-glu 100.0 8.4E-55 1.8E-59 396.4 30.3 263 14-309 4-266 (275)
10 PLN02587 L-galactose dehydroge 100.0 7.6E-54 1.7E-58 397.7 29.9 268 16-305 1-300 (314)
11 cd06660 Aldo_ket_red Aldo-keto 100.0 1.3E-53 2.8E-58 391.0 28.9 263 16-303 1-285 (285)
12 PRK10376 putative oxidoreducta 100.0 2E-51 4.2E-56 377.3 28.9 257 16-305 9-288 (290)
13 PF00248 Aldo_ket_red: Aldo/ke 100.0 4.5E-52 9.7E-57 380.5 24.4 253 30-304 1-282 (283)
14 PRK14863 bifunctional regulato 100.0 1.5E-49 3.2E-54 364.4 22.4 249 26-301 3-278 (292)
15 COG1453 Predicted oxidoreducta 100.0 9.2E-49 2E-53 353.0 21.7 285 14-327 1-310 (391)
16 COG4989 Predicted oxidoreducta 100.0 3.6E-48 7.9E-53 331.8 19.0 266 14-304 1-292 (298)
17 KOG1576 Predicted oxidoreducta 100.0 7.1E-44 1.5E-48 307.6 19.7 269 3-294 11-310 (342)
18 KOG3023 Glutamate-cysteine lig 98.4 5.8E-07 1.3E-11 77.7 6.5 76 152-227 153-229 (285)
19 PF07021 MetW: Methionine bios 88.8 6.1 0.00013 33.9 10.2 102 109-229 62-170 (193)
20 PLN02489 homocysteine S-methyl 86.8 28 0.0006 32.7 19.5 216 41-289 53-332 (335)
21 TIGR00190 thiC thiamine biosyn 86.0 33 0.00071 32.8 18.7 148 32-227 66-225 (423)
22 PRK08392 hypothetical protein; 85.6 23 0.0005 30.7 16.8 179 45-259 16-209 (215)
23 PRK00912 ribonuclease P protei 84.3 28 0.0006 30.8 12.6 170 42-259 15-202 (237)
24 cd03316 MR_like Mandelate race 80.8 50 0.0011 31.0 14.5 148 41-225 139-298 (357)
25 COG2040 MHT1 Homocysteine/sele 80.8 39 0.00085 30.9 11.9 218 40-289 40-297 (300)
26 PRK13352 thiamine biosynthesis 80.5 57 0.0012 31.4 18.7 148 32-227 66-228 (431)
27 PRK10558 alpha-dehydro-beta-de 79.8 24 0.00051 31.8 10.5 101 161-290 10-115 (256)
28 PRK13796 GTPase YqeH; Provisio 78.7 48 0.001 31.5 12.7 121 40-186 54-179 (365)
29 COG4943 Predicted signal trans 77.4 20 0.00044 35.1 9.5 121 87-224 350-477 (524)
30 PRK10128 2-keto-3-deoxy-L-rham 77.1 36 0.00077 30.9 10.8 101 161-290 9-114 (267)
31 PRK04452 acetyl-CoA decarbonyl 75.5 29 0.00063 32.3 9.9 97 113-228 83-185 (319)
32 TIGR00381 cdhD CO dehydrogenas 74.6 82 0.0018 30.1 12.8 97 116-229 150-251 (389)
33 PRK08609 hypothetical protein; 74.2 1E+02 0.0023 31.2 17.6 183 45-259 351-553 (570)
34 TIGR03239 GarL 2-dehydro-3-deo 72.7 42 0.00091 30.0 10.0 96 166-290 8-108 (249)
35 COG1748 LYS9 Saccharopine dehy 72.1 20 0.00043 34.4 8.1 79 43-134 79-159 (389)
36 TIGR01228 hutU urocanate hydra 69.4 16 0.00035 35.8 6.8 128 49-203 109-260 (545)
37 cd03319 L-Ala-DL-Glu_epimerase 69.4 94 0.002 28.6 16.7 150 41-228 134-289 (316)
38 PRK05414 urocanate hydratase; 69.1 17 0.00036 35.9 6.8 128 49-203 118-269 (556)
39 COG0159 TrpA Tryptophan syntha 68.7 88 0.0019 28.3 11.0 138 152-302 76-242 (265)
40 COG2200 Rtn c-di-GMP phosphodi 66.8 45 0.00097 29.9 9.0 130 69-224 69-212 (256)
41 cd00739 DHPS DHPS subgroup of 65.2 91 0.002 28.0 10.6 105 104-226 23-128 (257)
42 cd03174 DRE_TIM_metallolyase D 64.6 55 0.0012 29.0 9.2 102 103-225 17-135 (265)
43 TIGR02026 BchE magnesium-proto 64.5 1E+02 0.0022 30.6 11.8 127 149-286 219-360 (497)
44 cd00423 Pterin_binding Pterin 63.8 95 0.0021 27.8 10.5 107 103-227 22-129 (258)
45 COG1140 NarY Nitrate reductase 63.0 4.5 9.7E-05 38.1 1.7 53 167-220 263-317 (513)
46 PRK13602 putative ribosomal pr 62.7 33 0.00071 25.0 6.0 58 161-225 3-60 (82)
47 TIGR00216 ispH_lytB (E)-4-hydr 61.2 93 0.002 28.4 9.9 115 160-285 146-273 (280)
48 PF01175 Urocanase: Urocanase; 60.2 22 0.00047 35.0 5.8 129 48-203 107-259 (546)
49 cd01973 Nitrogenase_VFe_beta_l 59.1 1.9E+02 0.004 28.4 13.7 118 62-196 64-193 (454)
50 KOG0259 Tyrosine aminotransfer 58.2 1.8E+02 0.0039 28.0 11.4 144 41-227 79-241 (447)
51 PRK06361 hypothetical protein; 57.5 1.2E+02 0.0027 25.9 15.1 184 44-263 11-200 (212)
52 TIGR02311 HpaI 2,4-dihydroxyhe 57.5 1.3E+02 0.0028 26.8 10.2 98 163-290 5-108 (249)
53 cd02801 DUS_like_FMN Dihydrour 57.4 1.3E+02 0.0028 26.0 10.2 127 40-191 64-206 (231)
54 cd02930 DCR_FMN 2,4-dienoyl-Co 57.0 1.7E+02 0.0038 27.5 13.9 91 89-193 203-301 (353)
55 PRK12581 oxaloacetate decarbox 56.3 2.1E+02 0.0046 28.2 15.6 113 41-179 103-215 (468)
56 PRK05692 hydroxymethylglutaryl 55.9 99 0.0022 28.3 9.3 97 108-223 28-138 (287)
57 COG0635 HemN Coproporphyrinoge 55.8 99 0.0021 30.0 9.7 74 101-180 200-276 (416)
58 PRK01045 ispH 4-hydroxy-3-meth 55.3 1.1E+02 0.0023 28.4 9.3 107 168-285 156-275 (298)
59 PRK10415 tRNA-dihydrouridine s 54.4 1.8E+02 0.004 27.0 13.1 129 40-193 74-219 (321)
60 cd07944 DRE_TIM_HOA_like 4-hyd 53.3 1.5E+02 0.0033 26.7 10.0 106 106-224 20-128 (266)
61 cd04734 OYE_like_3_FMN Old yel 53.1 2E+02 0.0043 27.0 14.0 37 158-194 274-311 (343)
62 PF02679 ComA: (2R)-phospho-3- 52.5 55 0.0012 29.2 6.8 79 42-131 83-169 (244)
63 PLN02746 hydroxymethylglutaryl 51.8 2.2E+02 0.0047 27.0 11.9 101 106-225 68-182 (347)
64 PRK07535 methyltetrahydrofolat 51.7 1.7E+02 0.0037 26.4 10.0 101 104-226 24-124 (261)
65 PRK12360 4-hydroxy-3-methylbut 51.7 1.7E+02 0.0036 26.8 9.9 107 168-285 157-274 (281)
66 PRK05283 deoxyribose-phosphate 50.5 1.2E+02 0.0025 27.4 8.6 85 30-124 135-227 (257)
67 COG2987 HutU Urocanate hydrata 50.3 38 0.00082 32.9 5.6 108 68-202 149-268 (561)
68 PRK01018 50S ribosomal protein 49.8 85 0.0019 23.7 6.6 61 157-224 4-64 (99)
69 TIGR03677 rpl7ae 50S ribosomal 49.5 1.2E+02 0.0026 23.7 7.6 64 155-224 12-75 (117)
70 PF01964 ThiC: ThiC family; I 49.1 1.2E+02 0.0027 29.1 8.8 141 40-228 73-225 (420)
71 PF01248 Ribosomal_L7Ae: Ribos 48.7 63 0.0014 23.8 5.7 64 156-225 2-65 (95)
72 COG1149 MinD superfamily P-loo 48.6 1E+02 0.0022 28.0 7.8 49 179-229 202-250 (284)
73 TIGR03597 GTPase_YqeH ribosome 47.4 2.5E+02 0.0054 26.5 11.7 120 41-186 49-173 (360)
74 COG2874 FlaH Predicted ATPases 47.3 1.6E+02 0.0034 26.0 8.5 153 17-189 19-181 (235)
75 PRK10550 tRNA-dihydrouridine s 47.2 2.4E+02 0.0052 26.2 14.7 132 40-193 72-219 (312)
76 PRK08645 bifunctional homocyst 47.1 3.3E+02 0.0072 27.8 20.9 210 40-289 40-286 (612)
77 PF02401 LYTB: LytB protein; 46.9 61 0.0013 29.6 6.3 107 168-285 155-274 (281)
78 PF15221 LEP503: Lens epitheli 46.5 31 0.00067 22.9 3.1 37 1-39 1-38 (61)
79 PRK04175 rpl7ae 50S ribosomal 45.6 1.2E+02 0.0026 23.9 7.1 64 155-224 16-79 (122)
80 COG0218 Predicted GTPase [Gene 44.5 2.1E+02 0.0045 24.8 11.7 133 6-167 55-198 (200)
81 PRK10605 N-ethylmaleimide redu 44.4 2.8E+02 0.0061 26.2 13.2 25 170-194 293-317 (362)
82 COG1751 Uncharacterized conser 43.9 79 0.0017 26.1 5.8 70 43-121 14-85 (186)
83 PF00682 HMGL-like: HMGL-like 43.8 2.1E+02 0.0046 24.8 9.3 141 106-289 14-176 (237)
84 PRK00164 moaA molybdenum cofac 43.6 2.7E+02 0.0058 25.7 14.1 128 40-190 49-183 (331)
85 PRK07945 hypothetical protein; 43.4 2.8E+02 0.0061 25.9 17.2 24 42-65 110-133 (335)
86 COG0761 lytB 4-Hydroxy-3-methy 42.7 1.6E+02 0.0035 27.0 8.2 71 204-285 200-277 (294)
87 PF11242 DUF2774: Protein of u 42.2 37 0.00079 23.3 3.0 23 244-266 15-37 (63)
88 PRK08776 cystathionine gamma-s 41.8 3.2E+02 0.007 26.2 10.9 73 156-229 111-186 (405)
89 COG1358 RPL8A Ribosomal protei 41.6 1.3E+02 0.0027 23.6 6.5 66 154-225 12-77 (116)
90 COG0042 tRNA-dihydrouridine sy 41.4 3E+02 0.0065 25.7 13.1 131 40-193 76-223 (323)
91 COG3623 SgaU Putative L-xylulo 41.1 48 0.001 29.4 4.4 73 21-98 65-156 (287)
92 TIGR01278 DPOR_BchB light-inde 41.1 3E+02 0.0064 27.5 10.7 142 66-228 67-243 (511)
93 PF03102 NeuB: NeuB family; I 40.9 1.8E+02 0.0039 25.9 8.2 114 40-181 53-183 (241)
94 cd04740 DHOD_1B_like Dihydroor 40.7 2.8E+02 0.0061 25.1 15.1 165 40-219 99-286 (296)
95 PRK08255 salicylyl-CoA 5-hydro 39.5 4.8E+02 0.01 27.5 13.7 115 89-220 617-737 (765)
96 PRK07094 biotin synthase; Prov 39.4 3.1E+02 0.0067 25.2 10.6 120 153-287 71-203 (323)
97 TIGR00735 hisF imidazoleglycer 39.2 2.8E+02 0.006 24.7 12.2 64 158-221 188-253 (254)
98 cd00740 MeTr MeTr subgroup of 37.6 3E+02 0.0065 24.6 10.7 105 102-227 23-128 (252)
99 COG0773 MurC UDP-N-acetylmuram 36.5 21 0.00046 34.9 1.7 27 248-274 112-141 (459)
100 PRK07534 methionine synthase I 36.5 3.7E+02 0.0079 25.2 24.3 210 41-289 43-294 (336)
101 TIGR00126 deoC deoxyribose-pho 36.4 1.3E+02 0.0029 26.2 6.6 73 40-122 129-205 (211)
102 cd01965 Nitrogenase_MoFe_beta_ 36.1 4.1E+02 0.0088 25.7 13.7 113 64-197 61-188 (428)
103 PRK10799 metal-binding protein 36.0 52 0.0011 29.3 4.1 31 49-80 200-230 (247)
104 PLN02444 HMP-P synthase 35.7 4.8E+02 0.011 26.4 18.0 146 32-227 226-383 (642)
105 TIGR01496 DHPS dihydropteroate 35.2 3.3E+02 0.0072 24.4 11.0 105 103-226 21-126 (257)
106 cd03322 rpsA The starvation se 35.2 3.9E+02 0.0084 25.2 15.0 145 41-227 126-274 (361)
107 PF04748 Polysacc_deac_2: Dive 35.2 2.9E+02 0.0063 24.0 8.6 92 33-130 64-183 (213)
108 PRK06683 hypothetical protein; 35.1 1.8E+02 0.0038 21.2 6.1 58 161-225 3-60 (82)
109 KOG0023 Alcohol dehydrogenase, 34.9 2.4E+02 0.0052 26.5 8.1 148 12-221 172-324 (360)
110 cd02932 OYE_YqiM_FMN Old yello 34.6 3.8E+02 0.0083 24.9 13.5 36 158-193 279-315 (336)
111 PRK00087 4-hydroxy-3-methylbut 34.5 2.8E+02 0.0062 28.5 9.7 112 162-284 148-270 (647)
112 TIGR00737 nifR3_yhdG putative 34.5 3.7E+02 0.0081 24.7 13.9 129 40-193 72-217 (319)
113 cd07948 DRE_TIM_HCS Saccharomy 34.5 3.5E+02 0.0075 24.3 10.3 94 108-225 24-132 (262)
114 COG0422 ThiC Thiamine biosynth 34.3 4.3E+02 0.0093 25.4 16.1 140 40-227 75-226 (432)
115 COG1902 NemA NADH:flavin oxido 34.3 4.2E+02 0.009 25.2 14.0 94 88-194 214-314 (363)
116 PRK14017 galactonate dehydrata 34.1 4.2E+02 0.009 25.2 14.7 68 158-227 217-288 (382)
117 TIGR02370 pyl_corrinoid methyl 34.0 2.7E+02 0.0058 23.8 8.1 148 40-219 9-164 (197)
118 PF00155 Aminotran_1_2: Aminot 33.8 3.8E+02 0.0082 24.6 10.8 52 177-228 129-191 (363)
119 PRK13561 putative diguanylate 33.8 4.1E+02 0.0089 27.1 10.8 116 91-224 486-610 (651)
120 TIGR01928 menC_lowGC/arch o-su 33.6 1.9E+02 0.0042 26.7 7.7 72 156-229 210-285 (324)
121 COG1168 MalY Bifunctional PLP- 33.6 75 0.0016 30.2 4.8 47 179-225 146-198 (388)
122 COG0282 ackA Acetate kinase [E 33.3 3.6E+02 0.0078 25.9 9.2 122 161-287 163-291 (396)
123 cd01822 Lysophospholipase_L1_l 33.3 2.2E+02 0.0048 22.9 7.4 58 169-226 38-109 (177)
124 COG0626 MetC Cystathionine bet 33.0 2.2E+02 0.0047 27.5 8.0 80 154-234 112-194 (396)
125 PRK15072 bifunctional D-altron 32.9 3.7E+02 0.008 25.8 9.7 69 157-227 245-317 (404)
126 cd04735 OYE_like_4_FMN Old yel 32.6 4.3E+02 0.0092 24.8 13.3 86 89-189 214-305 (353)
127 cd07943 DRE_TIM_HOA 4-hydroxy- 32.5 3.6E+02 0.0079 24.0 9.7 104 108-224 24-131 (263)
128 PF01408 GFO_IDH_MocA: Oxidore 32.2 2.2E+02 0.0048 21.4 8.5 86 160-254 15-114 (120)
129 COG0159 TrpA Tryptophan syntha 32.1 3.9E+02 0.0084 24.2 10.5 52 192-254 94-148 (265)
130 cd00405 PRAI Phosphoribosylant 31.6 3.2E+02 0.007 23.2 10.0 46 113-182 67-112 (203)
131 PF06080 DUF938: Protein of un 31.0 91 0.002 27.1 4.6 62 195-256 108-187 (204)
132 cd03315 MLE_like Muconate lact 30.9 3.8E+02 0.0083 23.8 17.0 151 41-228 85-241 (265)
133 PF01487 DHquinase_I: Type I 3 30.8 3.5E+02 0.0076 23.3 10.8 121 40-187 72-192 (224)
134 COG1167 ARO8 Transcriptional r 30.8 5.2E+02 0.011 25.3 16.0 151 41-228 105-270 (459)
135 PRK02301 putative deoxyhypusin 30.6 4.1E+02 0.0089 24.8 9.1 74 13-97 13-94 (316)
136 COG2089 SpsE Sialic acid synth 30.3 4.7E+02 0.01 24.6 10.6 120 40-186 87-222 (347)
137 PF00809 Pterin_bind: Pterin b 30.2 1.7E+02 0.0036 25.3 6.2 96 115-228 28-126 (210)
138 PF14871 GHL6: Hypothetical gl 30.0 51 0.0011 26.4 2.7 21 208-228 47-67 (132)
139 PF13380 CoA_binding_2: CoA bi 29.8 2.5E+02 0.0055 21.6 6.6 19 206-224 90-108 (116)
140 PF06506 PrpR_N: Propionate ca 29.8 1.4E+02 0.003 24.9 5.5 65 154-223 63-130 (176)
141 PRK10528 multifunctional acyl- 29.7 2.2E+02 0.0048 23.9 6.9 61 164-224 40-114 (191)
142 PRK11059 regulatory protein Cs 29.6 2.4E+02 0.0052 28.8 8.2 134 90-258 483-629 (640)
143 cd01306 PhnM PhnM is believed 29.6 1.7E+02 0.0038 27.3 6.6 71 155-226 95-184 (325)
144 cd00308 enolase_like Enolase-s 29.5 3.7E+02 0.0081 23.2 10.2 70 158-229 134-207 (229)
145 PLN02775 Probable dihydrodipic 29.3 3.4E+02 0.0073 24.9 8.2 72 111-204 68-139 (286)
146 PRK06015 keto-hydroxyglutarate 29.2 1.5E+02 0.0032 25.7 5.6 61 156-223 41-102 (201)
147 PRK03995 hypothetical protein; 28.7 3.2E+02 0.0069 24.8 7.8 78 28-122 182-264 (267)
148 COG4152 ABC-type uncharacteriz 28.5 1.7E+02 0.0038 26.5 5.9 72 102-189 102-199 (300)
149 COG4626 Phage terminase-like p 28.4 2.2E+02 0.0049 28.6 7.3 75 152-227 410-485 (546)
150 PF01053 Cys_Met_Meta_PP: Cys/ 28.4 1.9E+02 0.0042 27.7 6.8 74 155-229 105-182 (386)
151 PF01118 Semialdhyde_dh: Semia 28.3 81 0.0018 24.4 3.6 28 40-67 74-101 (121)
152 TIGR01182 eda Entner-Doudoroff 28.1 1.7E+02 0.0036 25.4 5.8 61 156-223 45-106 (204)
153 cd02070 corrinoid_protein_B12- 28.0 3.8E+02 0.0082 22.8 9.7 147 40-218 8-161 (201)
154 cd01320 ADA Adenosine deaminas 27.9 4.7E+02 0.01 23.9 17.7 125 154-300 172-303 (325)
155 COG2949 SanA Uncharacterized m 27.8 4.2E+02 0.009 23.2 9.9 112 94-228 65-183 (235)
156 TIGR02080 O_succ_thio_ly O-suc 27.8 5.3E+02 0.012 24.4 10.8 72 156-228 102-176 (382)
157 PRK08247 cystathionine gamma-s 27.6 5.2E+02 0.011 24.2 10.6 58 170-228 116-176 (366)
158 cd00945 Aldolase_Class_I Class 27.4 3.1E+02 0.0067 22.6 7.4 78 42-124 64-147 (201)
159 PRK13958 N-(5'-phosphoribosyl) 27.4 2.1E+02 0.0046 24.7 6.4 68 114-202 16-84 (207)
160 COG2185 Sbm Methylmalonyl-CoA 27.1 3.5E+02 0.0075 22.1 11.8 106 46-188 29-135 (143)
161 TIGR00321 dhys deoxyhypusine s 27.0 5.1E+02 0.011 24.0 10.0 145 32-226 24-182 (301)
162 COG2159 Predicted metal-depend 26.9 3.6E+02 0.0077 24.7 8.1 93 115-228 55-167 (293)
163 cd02933 OYE_like_FMN Old yello 26.9 5.3E+02 0.011 24.1 13.7 35 159-193 275-309 (338)
164 PF01904 DUF72: Protein of unk 26.8 4.3E+02 0.0094 23.1 9.6 68 57-133 19-96 (230)
165 TIGR02534 mucon_cyclo muconate 26.5 2.4E+02 0.0053 26.6 7.2 66 158-225 227-296 (368)
166 PF07287 DUF1446: Protein of u 26.0 2.9E+02 0.0063 26.3 7.4 87 158-255 12-100 (362)
167 PRK14461 ribosomal RNA large s 25.7 4.3E+02 0.0094 25.2 8.5 99 125-229 231-352 (371)
168 TIGR02026 BchE magnesium-proto 25.5 6.7E+02 0.014 24.8 12.1 67 153-219 321-392 (497)
169 PF02574 S-methyl_trans: Homoc 25.5 5.2E+02 0.011 23.6 10.5 219 41-289 39-304 (305)
170 PRK09613 thiH thiamine biosynt 25.2 4.1E+02 0.0088 26.3 8.5 107 103-228 116-242 (469)
171 COG1104 NifS Cysteine sulfinat 25.1 1.6E+02 0.0034 28.3 5.4 69 155-223 102-176 (386)
172 cd02931 ER_like_FMN Enoate red 24.9 6.1E+02 0.013 24.1 13.7 34 160-193 296-330 (382)
173 COG4464 CapC Capsular polysacc 24.7 3.4E+02 0.0074 24.0 6.9 110 40-174 17-135 (254)
174 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.6 5.2E+02 0.011 23.3 9.8 121 108-251 23-157 (275)
175 PRK06552 keto-hydroxyglutarate 24.3 2.1E+02 0.0045 24.9 5.7 61 156-223 50-114 (213)
176 PRK09061 D-glutamate deacylase 24.1 7.2E+02 0.016 24.7 11.4 109 45-176 171-283 (509)
177 TIGR03700 mena_SCO4494 putativ 24.1 6E+02 0.013 23.8 12.1 137 103-285 80-223 (351)
178 TIGR01917 gly_red_sel_B glycin 24.1 4.4E+02 0.0095 25.7 8.2 70 158-227 289-373 (431)
179 cd03325 D-galactonate_dehydrat 24.0 6E+02 0.013 23.7 15.6 67 157-225 215-285 (352)
180 PRK08574 cystathionine gamma-s 23.5 6.4E+02 0.014 23.9 9.5 69 158-229 106-178 (385)
181 PRK09058 coproporphyrinogen II 23.3 7E+02 0.015 24.3 11.5 110 46-178 163-302 (449)
182 TIGR00035 asp_race aspartate r 23.3 3.7E+02 0.0079 23.4 7.2 83 104-192 16-99 (229)
183 smart00148 PLCXc Phospholipase 23.2 3.4E+02 0.0073 21.6 6.4 18 46-63 31-48 (135)
184 cd01966 Nitrogenase_NifN_1 Nit 23.1 4.8E+02 0.01 25.2 8.5 115 64-195 61-188 (417)
185 TIGR00289 conserved hypothetic 23.0 5.2E+02 0.011 22.7 9.3 105 208-326 75-196 (222)
186 COG2120 Uncharacterized protei 22.9 4.3E+02 0.0093 23.3 7.6 55 72-131 27-86 (237)
187 PRK02515 psbU photosystem II c 22.9 14 0.0003 29.5 -1.7 37 291-328 54-90 (132)
188 COG0821 gcpE 1-hydroxy-2-methy 22.6 6.5E+02 0.014 23.7 8.7 93 106-223 34-128 (361)
189 PLN02363 phosphoribosylanthran 22.6 3E+02 0.0064 24.8 6.5 83 94-202 48-131 (256)
190 PRK09413 IS2 repressor TnpA; R 22.6 1.2E+02 0.0026 23.6 3.6 39 42-80 15-54 (121)
191 PRK14462 ribosomal RNA large s 22.5 5.1E+02 0.011 24.5 8.4 77 153-229 245-338 (356)
192 PF05368 NmrA: NmrA-like famil 22.5 3.9E+02 0.0085 22.8 7.3 67 160-229 36-105 (233)
193 PRK07714 hypothetical protein; 22.5 3.4E+02 0.0073 20.3 7.4 63 155-224 4-66 (100)
194 PF05913 DUF871: Bacterial pro 22.1 1.6E+02 0.0034 28.0 4.8 201 41-287 12-235 (357)
195 COG0289 DapB Dihydrodipicolina 22.1 4E+02 0.0087 24.1 7.1 51 154-204 79-129 (266)
196 TIGR01329 cysta_beta_ly_E cyst 22.1 6E+02 0.013 24.0 8.9 71 157-228 98-171 (378)
197 cd03323 D-glucarate_dehydratas 22.1 3.4E+02 0.0074 26.0 7.3 68 158-227 250-321 (395)
198 TIGR01918 various_sel_PB selen 22.0 5.1E+02 0.011 25.2 8.2 70 158-227 289-373 (431)
199 COG3215 PilZ Tfp pilus assembl 21.9 2.3E+02 0.0049 21.7 4.6 66 43-116 20-105 (117)
200 TIGR03471 HpnJ hopanoid biosyn 21.7 7.6E+02 0.016 24.1 11.5 124 149-287 224-361 (472)
201 TIGR00676 fadh2 5,10-methylene 21.7 5.9E+02 0.013 22.9 16.0 153 45-221 17-186 (272)
202 PRK09776 putative diguanylate 21.6 8.2E+02 0.018 26.5 11.0 134 90-258 925-1070(1092)
203 cd07939 DRE_TIM_NifV Streptomy 21.6 5.7E+02 0.012 22.6 12.9 94 106-223 20-128 (259)
204 PRK12323 DNA polymerase III su 21.2 3.6E+02 0.0079 28.0 7.4 65 104-187 106-172 (700)
205 PRK15408 autoinducer 2-binding 21.2 6.6E+02 0.014 23.2 11.1 76 87-186 22-97 (336)
206 PRK09485 mmuM homocysteine met 21.0 6.5E+02 0.014 23.1 23.3 213 41-288 44-302 (304)
207 PF01081 Aldolase: KDPG and KH 21.0 1.5E+02 0.0031 25.6 4.0 46 171-223 60-106 (196)
208 smart00642 Aamy Alpha-amylase 21.0 1.8E+02 0.004 24.1 4.6 74 154-229 18-94 (166)
209 cd00959 DeoC 2-deoxyribose-5-p 21.0 2.9E+02 0.0062 23.6 6.0 71 41-120 129-202 (203)
210 PLN02540 methylenetetrahydrofo 21.0 8.9E+02 0.019 24.6 18.1 157 46-223 18-202 (565)
211 COG2355 Zn-dependent dipeptida 21.0 6.8E+02 0.015 23.3 9.8 107 45-177 151-260 (313)
212 PRK00507 deoxyribose-phosphate 20.9 4.8E+02 0.01 22.8 7.4 72 40-121 133-208 (221)
213 PRK13361 molybdenum cofactor b 20.9 6.7E+02 0.015 23.1 17.6 106 40-169 45-154 (329)
214 COG1795 Formaldehyde-activatin 20.8 1.8E+02 0.004 23.9 4.2 51 66-117 80-144 (170)
215 PRK07811 cystathionine gamma-s 20.8 7.2E+02 0.016 23.5 10.1 51 177-228 133-186 (388)
216 PF01784 NIF3: NIF3 (NGG1p int 20.8 49 0.0011 29.3 1.1 53 26-79 168-234 (241)
217 TIGR00016 ackA acetate kinase. 20.7 2.8E+02 0.006 26.8 6.2 122 160-286 167-296 (404)
218 cd00248 Mth938-like Mth938-lik 20.7 3.1E+02 0.0068 20.9 5.5 54 175-228 36-89 (109)
219 TIGR03822 AblA_like_2 lysine-2 20.7 6.8E+02 0.015 23.1 9.2 74 154-229 152-238 (321)
220 PF04414 tRNA_deacylase: D-ami 20.7 1.5E+02 0.0033 25.9 4.1 76 28-121 131-210 (213)
221 PRK14457 ribosomal RNA large s 20.7 7.2E+02 0.016 23.4 13.7 148 68-228 163-329 (345)
222 COG1908 FrhD Coenzyme F420-red 20.7 3.6E+02 0.0079 21.3 5.7 41 47-92 44-98 (132)
223 PRK10060 RNase II stability mo 20.5 9.3E+02 0.02 24.7 12.3 114 90-224 492-617 (663)
224 TIGR02660 nifV_homocitr homoci 20.5 7.3E+02 0.016 23.4 12.8 92 108-223 25-131 (365)
225 PRK08045 cystathionine gamma-s 20.4 7.1E+02 0.015 23.6 9.1 72 157-229 104-178 (386)
226 TIGR01862 N2-ase-Ialpha nitrog 20.4 8E+02 0.017 23.9 14.4 146 64-228 97-272 (443)
227 PF01408 GFO_IDH_MocA: Oxidore 20.4 3.8E+02 0.0081 20.0 6.3 61 161-223 54-118 (120)
228 cd01821 Rhamnogalacturan_acety 20.4 4.7E+02 0.01 21.7 7.2 88 169-256 36-149 (198)
229 PRK11829 biofilm formation reg 20.3 6.5E+02 0.014 25.6 9.4 116 91-224 491-615 (660)
230 PRK14476 nitrogenase molybdenu 20.2 8.2E+02 0.018 23.9 9.8 114 64-194 72-198 (455)
231 PRK12331 oxaloacetate decarbox 20.1 8.3E+02 0.018 24.0 11.2 114 108-252 28-163 (448)
232 TIGR02637 RhaS rhamnose ABC tr 20.1 3.7E+02 0.0081 23.9 6.9 17 43-59 68-84 (302)
233 PF01113 DapB_N: Dihydrodipico 20.1 2.6E+02 0.0055 21.8 5.0 42 154-195 77-118 (124)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=7.4e-65 Score=452.83 Aligned_cols=266 Identities=43% Similarity=0.732 Sum_probs=244.7
Q ss_pred cCeEEcCCCCCCcccCccceeccccCCChhHHHHHHHHHHHcCCCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEE
Q 020174 14 VPEVKLSSASGHRKMPVIGLGSAVDNIDESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFI 93 (330)
Q Consensus 14 m~~~~lg~t~g~~~vs~lglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I 93 (330)
+.+.+|++ | .+||.||||||+.+ +.....+.+.+|++.|+|+||||..||||+.||++|++. |+ +|+++||
T Consensus 3 ~~~~~l~~--g-~~iP~iGlGt~~~~-~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~v--~ReelFi 73 (280)
T COG0656 3 KTKVTLNN--G-VEIPAIGLGTWQIG-DDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---GV--PREELFI 73 (280)
T ss_pred CceeecCC--C-CcccCcceEeeecC-CchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---CC--CHHHeEE
Confidence 55788999 7 88999999999975 222278999999999999999999999999999999985 77 8999999
Q ss_pred EeecCCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceE
Q 020174 94 TTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSI 173 (330)
Q Consensus 94 ~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~i 173 (330)
+||+|..+.+++.+.+++++||++||+||+|||++|||... . ...+.++|++|++++++||||+|
T Consensus 74 ttKvw~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~--------------~~~~~etw~alE~l~~~G~ir~I 138 (280)
T COG0656 74 TTKVWPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-K--------------YVVIEETWKALEELVDEGLIRAI 138 (280)
T ss_pred EeecCCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-c--------------CccHHHHHHHHHHHHhcCCccEE
Confidence 99999999999999999999999999999999999999643 1 01167999999999999999999
Q ss_pred ecCCCCHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCChHHHHHHHHHhC
Q 020174 174 GVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHG 253 (330)
Q Consensus 174 Gvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~~ 253 (330)
|||||+..+++++++..++.|+++|++||++.++.+++++|+++||.++||+||+. |. .++.++.+.++|++||
T Consensus 139 GVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~-g~-----~l~~~~~l~~Ia~k~g 212 (280)
T COG0656 139 GVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAK-GG-----KLLDNPVLAEIAKKYG 212 (280)
T ss_pred EeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccc-cc-----ccccChHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999985 32 1678899999999999
Q ss_pred CCHHHHHHHHHHhcCCEEeeCCCCHHHHHHhhcccccccCHHHHHHHhccCCCCCC
Q 020174 254 KTVAQVCLRWIIEQGATAAVKSFNKERLKENLEIFDWALTDDDHDKIRQIPQRRMM 309 (330)
Q Consensus 254 ~s~~qlal~~~l~~~~~~i~g~~~~~~l~~nl~~~~~~L~~~~~~~l~~~~~~~~~ 309 (330)
.|++|++|+|++++|+++||.+++++|+++|++++++.||++|++.|+++......
T Consensus 213 ~t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 213 KTPAQVALRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred CCHHHHHHHHHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccCc
Confidence 99999999999999999999999999999999999999999999999999877654
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=4.7e-63 Score=441.19 Aligned_cols=281 Identities=48% Similarity=0.777 Sum_probs=256.0
Q ss_pred eEEcCCCCCCcccCccceeccccCCChhHHHHHHHHHHHcCCCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEe
Q 020174 16 EVKLSSASGHRKMPVIGLGSAVDNIDESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITT 95 (330)
Q Consensus 16 ~~~lg~t~g~~~vs~lglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~t 95 (330)
+++|++ | .++|.||||||+ .++.+....+..|++.||||||||..||||+.+|++|++.+.+|.+ +|+++||+|
T Consensus 6 ~~~Ln~--G-~~mP~iGlGTw~--~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v-~RediFiTS 79 (300)
T KOG1577|consen 6 TVKLNN--G-FKMPIIGLGTWQ--SPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGV-KREDIFITS 79 (300)
T ss_pred eEeccC--C-CccceeeeEecc--cChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCc-chhhheeee
Confidence 789999 9 999999999999 5678899999999999999999999999999999999999877766 999999999
Q ss_pred ecCCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCC--ccc-cccccHHHHHHHHHHHHHcCCcce
Q 020174 96 KLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIP--EED-LVSLDYNGVWEAMEECQRHGLTKS 172 (330)
Q Consensus 96 K~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~L~~l~~~GkIr~ 172 (330)
|+|+..+.++.++.++++||++||+||+|+|++|||...++ ..+.+ .+. ....+..++|++|++++++|++|+
T Consensus 80 Klw~~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~----~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rs 155 (300)
T KOG1577|consen 80 KLWPTDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKD----SFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRS 155 (300)
T ss_pred ccCccccChhhHHHHHHHHHHHhChhhhheeeEecccccCC----CCCcccccccccccchHHHHHHHHHHHHHcCCceE
Confidence 99998889999999999999999999999999999987643 11111 111 122468899999999999999999
Q ss_pred EecCCCCHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCChHHHHHHHHHh
Q 020174 173 IGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAH 252 (330)
Q Consensus 173 iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~ 252 (330)
||||||+..+|++++..+.++|.++|++++|++++.+++++|+++||.|.|||||+..+. +. .++.++.+.++|++|
T Consensus 156 IGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~--~~-~ll~~~~l~~iA~K~ 232 (300)
T KOG1577|consen 156 IGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR--GS-DLLEDPVLKEIAKKY 232 (300)
T ss_pred eeeecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC--cc-ccccCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999997333 12 678899999999999
Q ss_pred CCCHHHHHHHHHHhcCCEEeeCCCCHHHHHHhhcccccccCHHHHHHHhccCCCCCC
Q 020174 253 GKTVAQVCLRWIIEQGATAAVKSFNKERLKENLEIFDWALTDDDHDKIRQIPQRRMM 309 (330)
Q Consensus 253 ~~s~~qlal~~~l~~~~~~i~g~~~~~~l~~nl~~~~~~L~~~~~~~l~~~~~~~~~ 309 (330)
+.|++|++|||++++|++|||.++|++|++||+++++|.||++|++.|+.+..+.|.
T Consensus 233 ~kt~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 233 NKTPAQILLRWALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNERY 289 (300)
T ss_pred CCCHHHHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhcccccee
Confidence 999999999999999999999999999999999999999999999999988887776
No 3
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1e-58 Score=420.80 Aligned_cols=285 Identities=28% Similarity=0.430 Sum_probs=253.7
Q ss_pred CcCccCCCcCeEEcCCCCCCcccCccceeccccC-----CChhHHHHHHHHHHHcCCCeEeCCCCcC---CHHHHHHHHH
Q 020174 6 EPMNVSINVPEVKLSSASGHRKMPVIGLGSAVDN-----IDESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIA 77 (330)
Q Consensus 6 ~~~~~~~~m~~~~lg~t~g~~~vs~lglG~~~~~-----~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~ 77 (330)
..|+....|++++||++ | ++||+||||+|.+. .++++++++|++|+++|+|+||||+.|| ||.++|++|+
T Consensus 4 ~~~~~~~~~~~~~lg~~-g-l~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~ 81 (336)
T KOG1575|consen 4 PEPSTELGMLRRKLGNS-G-LKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIK 81 (336)
T ss_pred ccccchhcceeeeccCC-C-ceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHH
Confidence 34444556999999997 8 99999999995432 4889999999999999999999999999 8999999999
Q ss_pred HHHhcCCCCCCCceEEEeecCC-------CCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccc
Q 020174 78 EALKLGLVASREELFITTKLWC-------SDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLV 150 (330)
Q Consensus 78 ~~~~~g~~~~R~~v~I~tK~~~-------~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~ 150 (330)
++ +. +|++++|+||++. ...+...+.+.++.|+++||++|||+|++||+|...+
T Consensus 82 ~~---~~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p-------------- 142 (336)
T KOG1575|consen 82 SR---GW--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP-------------- 142 (336)
T ss_pred hc---CC--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC--------------
Confidence 87 54 8999999999953 2345678999999999999999999999999988766
Q ss_pred cccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhh---HHHHHHHHhcCCeEEEeccC
Q 020174 151 SLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ---RKLVEFCKSKSIIVTAFSPL 227 (330)
Q Consensus 151 ~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~via~~~l 227 (330)
.++++++|.+++++||||+||+|+++++++.++...+.++++++|++||++.++ .+++++|++.||++++|+||
T Consensus 143 ---iee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL 219 (336)
T KOG1575|consen 143 ---IEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPL 219 (336)
T ss_pred ---HHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEeccc
Confidence 789999999999999999999999999999999999888899999999999886 46999999999999999999
Q ss_pred CcCCCCCCCCCC-----------------CC----------hHHHHHHHHHhCCCHHHHHHHHHHhcC--CEEeeCCCCH
Q 020174 228 GAVGSSWGTNQV-----------------MN----------NEALKQIAAAHGKTVAQVCLRWIIEQG--ATAAVKSFNK 278 (330)
Q Consensus 228 ~~~G~l~~~~~~-----------------~~----------~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~ 278 (330)
+. |+|+++... .. .+.+.++|+++|+|++|+||+|+++++ +++|||+++.
T Consensus 220 ~~-G~Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~v 298 (336)
T KOG1575|consen 220 GR-GLLTGKYKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKI 298 (336)
T ss_pred cc-ceeccCcccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcH
Confidence 98 999865221 00 145889999999999999999999998 8999999999
Q ss_pred HHHHHhhcccccccCHHHHHHHhccCCCCCCCCCCcc
Q 020174 279 ERLKENLEIFDWALTDDDHDKIRQIPQRRMMPRDDFI 315 (330)
Q Consensus 279 ~~l~~nl~~~~~~L~~~~~~~l~~~~~~~~~~~~~~~ 315 (330)
+|++||++++++.|+++++..|++........++.+.
T Consensus 299 e~l~eni~Al~~~Lt~e~~~~l~~~~~~~~~~~~~~~ 335 (336)
T KOG1575|consen 299 EQLKENIGALSVKLTPEEIKELEEIIDKILGFGPRSI 335 (336)
T ss_pred HHHHHHHhhhhccCCHHHHHHHHHhhccccCcCCCCC
Confidence 9999999999999999999999999888877776653
No 4
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.9e-58 Score=426.40 Aligned_cols=266 Identities=33% Similarity=0.513 Sum_probs=236.5
Q ss_pred cCeEEcCCCCCCcccCccceeccccCC-----ChhHHHHHHHHHHHcCCCeEeCCCCcC---CHHHHHHHHHHHHhcCCC
Q 020174 14 VPEVKLSSASGHRKMPVIGLGSAVDNI-----DESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGLV 85 (330)
Q Consensus 14 m~~~~lg~t~g~~~vs~lglG~~~~~~-----~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~g~~ 85 (330)
|.||+||+| | ++||+||||||.++. +.+++.++|++|+++|||+||||+.|| ||++||++|+.. +
T Consensus 1 m~~r~lG~~-g-l~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~-- 73 (316)
T COG0667 1 MKYRRLGRS-G-LKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---G-- 73 (316)
T ss_pred CCceecCCC-C-ceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---C--
Confidence 789999998 9 999999999999983 233556799999999999999999999 899999999975 3
Q ss_pred CCCCceEEEeecCCC----------CCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHH
Q 020174 86 ASREELFITTKLWCS----------DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYN 155 (330)
Q Consensus 86 ~~R~~v~I~tK~~~~----------~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 155 (330)
.|++++|+||++.. +.++++|+++++.||+||||||||+|++|||+...+ .+
T Consensus 74 -~Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p-----------------~~ 135 (316)
T COG0667 74 -RRDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP-----------------IE 135 (316)
T ss_pred -CCCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC-----------------HH
Confidence 38999999999532 347999999999999999999999999999987544 67
Q ss_pred HHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhh--HHHHHHHHhcCCeEEEeccCCcCCCC
Q 020174 156 GVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ--RKLVEFCKSKSIIVTAFSPLGAVGSS 233 (330)
Q Consensus 156 ~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~l~~~~~~gi~via~~~l~~~G~l 233 (330)
+++.+|.+|+++||||+||+||++.+++.++++.+ .+++++|.+||++.++ .+++++|+++||++++|+||++ |+|
T Consensus 136 e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~-G~L 213 (316)
T COG0667 136 ETLEALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLAS-GLL 213 (316)
T ss_pred HHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccc-ccc
Confidence 88999999999999999999999999999998886 6789999999999965 4589999999999999999998 999
Q ss_pred CCCCCC------------CC----------hHHHHHHHHHhCCCHHHHHHHHHHhcC--CEEeeCCCCHHHHHHhhcccc
Q 020174 234 WGTNQV------------MN----------NEALKQIAAAHGKTVAQVCLRWIIEQG--ATAAVKSFNKERLKENLEIFD 289 (330)
Q Consensus 234 ~~~~~~------------~~----------~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~~~~ 289 (330)
+++... +. ...+.++|+++|+|++|+||+|++++| +++|+|+++++||++|+++++
T Consensus 214 tgk~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~ 293 (316)
T COG0667 214 TGKYLPGPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALD 293 (316)
T ss_pred CCCcCCCcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhc
Confidence 875322 10 134888999999999999999999997 799999999999999999999
Q ss_pred cccCHHHHHHHhccCCC
Q 020174 290 WALTDDDHDKIRQIPQR 306 (330)
Q Consensus 290 ~~L~~~~~~~l~~~~~~ 306 (330)
..|++++++.|++....
T Consensus 294 ~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 294 IKLSEEELAALDEISAE 310 (316)
T ss_pred CCCCHHHHHHHHHHhhh
Confidence 99999999999977543
No 5
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.8e-57 Score=412.50 Aligned_cols=254 Identities=36% Similarity=0.611 Sum_probs=228.7
Q ss_pred cccCccceeccccCCChhHHHHHHHHHHHcCCCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChh
Q 020174 26 RKMPVIGLGSAVDNIDESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRD 105 (330)
Q Consensus 26 ~~vs~lglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~ 105 (330)
++||+||||||+++ .+++.+++++|++.|||+||||+.||+|+.+|++|++. |+ +|+++||+||++....+++
T Consensus 1 ~~vs~lglGt~~~~--~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~v~i~TK~~~~~~~~~ 73 (267)
T PRK11172 1 MSIPAFGLGTFRLK--DQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---GV--PRDELFITTKIWIDNLAKD 73 (267)
T ss_pred CCCCCEeeEccccC--hHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---CC--ChhHeEEEEEeCCCCCCHH
Confidence 36999999999864 56789999999999999999999999999999999864 55 7999999999977667889
Q ss_pred hHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHH
Q 020174 106 LVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIET 185 (330)
Q Consensus 106 ~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~ 185 (330)
.+++++++||+|||+||||+|++|||+.... ....++|++|++|+++||||+||||||+.+++++
T Consensus 74 ~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~---------------~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~ 138 (267)
T PRK11172 74 KLIPSLKESLQKLRTDYVDLTLIHWPSPNDE---------------VSVEEFMQALLEAKKQGLTREIGISNFTIALMKQ 138 (267)
T ss_pred HHHHHHHHHHHHhCCCceEEEEeCCCCCCCC---------------CCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHH
Confidence 9999999999999999999999999964211 2267899999999999999999999999999999
Q ss_pred HHHhCCC-CceeeccccChhhhhHHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHH
Q 020174 186 ILAFATI-PPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGKTVAQVCLRWI 264 (330)
Q Consensus 186 ~~~~~~~-~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~qlal~~~ 264 (330)
+++.... +++++|++||++.++.+++++|+++||+|++|+||++ |.+. .++.+.++|+++|+|++|+||+|+
T Consensus 139 ~~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~-G~~~------~~~~l~~~a~~~~~s~aqval~w~ 211 (267)
T PRK11172 139 AIAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAY-GKVL------KDPVIARIAAKHNATPAQVILAWA 211 (267)
T ss_pred HHHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCC-Cccc------CCHHHHHHHHHhCCCHHHHHHHHH
Confidence 9876553 6789999999998888999999999999999999997 7542 346799999999999999999999
Q ss_pred HhcCCEEeeCCCCHHHHHHhhcccccccCHHHHHHHhccCCCCC
Q 020174 265 IEQGATAAVKSFNKERLKENLEIFDWALTDDDHDKIRQIPQRRM 308 (330)
Q Consensus 265 l~~~~~~i~g~~~~~~l~~nl~~~~~~L~~~~~~~l~~~~~~~~ 308 (330)
+++|.++|+|+++++|+++|+++++++|++++++.|+++.++.+
T Consensus 212 l~~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~ 255 (267)
T PRK11172 212 MQLGYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRNGR 255 (267)
T ss_pred HhCCCEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccCCc
Confidence 99998899999999999999999999999999999999976643
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=7.8e-56 Score=416.22 Aligned_cols=282 Identities=26% Similarity=0.349 Sum_probs=234.1
Q ss_pred cCeEEcCCCCCCcccCccceeccccC--CChhHHHHHHHHHHHcCCCeEeCCCCcC----------CHHHHHHHHHHHHh
Q 020174 14 VPEVKLSSASGHRKMPVIGLGSAVDN--IDESAMKSAVLESIKLGYRHFDTASLYG----------TERALGEAIAEALK 81 (330)
Q Consensus 14 m~~~~lg~t~g~~~vs~lglG~~~~~--~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg----------se~~lG~~l~~~~~ 81 (330)
|+|++||+| | ++||+||||||.+| .+.+++.++|++|++.|||+||||+.|| ||+.+|++|++.
T Consensus 1 m~~r~lg~t-~-~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~-- 76 (346)
T PRK10625 1 MQYHRIPHS-S-LEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR-- 76 (346)
T ss_pred CCceecCCC-C-CccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc--
Confidence 679999999 9 99999999999987 3678899999999999999999999996 899999999853
Q ss_pred cCCCCCCCceEEEeecCCC------------CCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCC--CccccCCCCcc
Q 020174 82 LGLVASREELFITTKLWCS------------DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKP--SEKLRNDIPEE 147 (330)
Q Consensus 82 ~g~~~~R~~v~I~tK~~~~------------~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~--~~~~~~~~~~~ 147 (330)
+ .|++++|+||++.. +.+++.+++++++||++||+||||+|++|||+.... ++ ..+....+
T Consensus 77 -~---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~-~~~~~~~~ 151 (346)
T PRK10625 77 -G---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGK-LGYSWTDS 151 (346)
T ss_pred -C---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccc-cccccccc
Confidence 3 59999999998531 357889999999999999999999999999964210 00 00000000
Q ss_pred ccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhC----CCCceeeccccChhhhh--HHHHHHHHhcCCeE
Q 020174 148 DLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFA----TIPPTVNQVEMNPAWQQ--RKLVEFCKSKSIIV 221 (330)
Q Consensus 148 ~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~----~~~~~~~q~~~~~~~~~--~~~l~~~~~~gi~v 221 (330)
.....+.++|++|++|+++||||+||+|||+.+++++++..+ ...+.++|++||++.++ .+++++|+++||++
T Consensus 152 -~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~v 230 (346)
T PRK10625 152 -APAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVEL 230 (346)
T ss_pred -cCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeE
Confidence 001236799999999999999999999999999988775432 23577899999998765 57999999999999
Q ss_pred EEeccCCcCCCCCCCC-----------CCCC-------------hHHHHHHHHHhCCCHHHHHHHHHHhcC--CEEeeCC
Q 020174 222 TAFSPLGAVGSSWGTN-----------QVMN-------------NEALKQIAAAHGKTVAQVCLRWIIEQG--ATAAVKS 275 (330)
Q Consensus 222 ia~~~l~~~G~l~~~~-----------~~~~-------------~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~ 275 (330)
++|+||++ |+|++.. ..+. .+.+.++|+++|+|++|+||+|++++| +++|+|+
T Consensus 231 ia~spL~~-G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~ 309 (346)
T PRK10625 231 LAYSCLAF-GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGA 309 (346)
T ss_pred EEeccccC-eeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCC
Confidence 99999998 9887531 0111 256889999999999999999999998 4689999
Q ss_pred CCHHHHHHhhcccccccCHHHHHHHhccCCC
Q 020174 276 FNKERLKENLEIFDWALTDDDHDKIRQIPQR 306 (330)
Q Consensus 276 ~~~~~l~~nl~~~~~~L~~~~~~~l~~~~~~ 306 (330)
++++|+++|+++++++|+++|++.|+++...
T Consensus 310 ~~~~~l~en~~a~~~~L~~~~~~~l~~~~~~ 340 (346)
T PRK10625 310 TTMEQLKTNIESLHLTLSEEVLAEIEAVHQV 340 (346)
T ss_pred CCHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999998643
No 7
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=8.7e-56 Score=411.15 Aligned_cols=263 Identities=27% Similarity=0.401 Sum_probs=228.4
Q ss_pred eEEcCCCCCCcccCccceeccc-cC--CChhHHHHHHHHHHHcCCCeEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCC
Q 020174 16 EVKLSSASGHRKMPVIGLGSAV-DN--IDESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGLVASRE 89 (330)
Q Consensus 16 ~~~lg~t~g~~~vs~lglG~~~-~~--~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~g~~~~R~ 89 (330)
||+||+| | ++||+||||||. ++ .+.+++.++|++|+++|||+||||+.|| ||+.+|++|++. +. +|+
T Consensus 1 ~r~lg~t-g-~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~~--~R~ 73 (317)
T TIGR01293 1 YRNLGKS-G-LRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---GW--RRS 73 (317)
T ss_pred CcccCCC-C-CeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---CC--Ccc
Confidence 5789998 9 999999999996 43 4678899999999999999999999998 899999999864 43 699
Q ss_pred ceEEEeecCCC-------CCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHH
Q 020174 90 ELFITTKLWCS-------DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAME 162 (330)
Q Consensus 90 ~v~I~tK~~~~-------~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 162 (330)
+++|+||++.. +.+++.+++++++||++||+||||+|++|||+...+ .+++|++|+
T Consensus 74 ~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~-----------------~~e~~~aL~ 136 (317)
T TIGR01293 74 SYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTP-----------------MEETVRAMT 136 (317)
T ss_pred cEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCC-----------------HHHHHHHHH
Confidence 99999998432 356899999999999999999999999999975332 678999999
Q ss_pred HHHHcCCcceEecCCCCHHHHHHHHHhC----CCCceeeccccChhhhh---HHHHHHHHhcCCeEEEeccCCcCCCCCC
Q 020174 163 ECQRHGLTKSIGVSNFSPKKIETILAFA----TIPPTVNQVEMNPAWQQ---RKLVEFCKSKSIIVTAFSPLGAVGSSWG 235 (330)
Q Consensus 163 ~l~~~GkIr~iGvs~~~~~~l~~~~~~~----~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~via~~~l~~~G~l~~ 235 (330)
+|+++||||+||+|||+.+++.++...+ .++++++|++||++.++ ..++++|+++||++++|+||++ |+|++
T Consensus 137 ~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~-G~Ltg 215 (317)
T TIGR01293 137 YVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLAC-GLVSG 215 (317)
T ss_pred HHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccc-cccCC
Confidence 9999999999999999999988775432 25788999999999875 3689999999999999999998 98875
Q ss_pred CCCC------------C---------C--------hHHHHHHHHHhCCCHHHHHHHHHHhcC--CEEeeCCCCHHHHHHh
Q 020174 236 TNQV------------M---------N--------NEALKQIAAAHGKTVAQVCLRWIIEQG--ATAAVKSFNKERLKEN 284 (330)
Q Consensus 236 ~~~~------------~---------~--------~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~n 284 (330)
.... + . .+.+.++|+++|+|++|+||+|++++| +++|+|+++++|+++|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en 295 (317)
T TIGR01293 216 KYDSGIPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMEN 295 (317)
T ss_pred CCCCCCCCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHH
Confidence 3210 0 0 146888999999999999999999997 5789999999999999
Q ss_pred hccccc--ccCHHHHHHHhcc
Q 020174 285 LEIFDW--ALTDDDHDKIRQI 303 (330)
Q Consensus 285 l~~~~~--~L~~~~~~~l~~~ 303 (330)
++++++ +|++++++.|+++
T Consensus 296 ~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 296 LGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HHHhhccCCCCHHHHHHHHhh
Confidence 999987 9999999999875
No 8
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.6e-55 Score=413.70 Aligned_cols=270 Identities=23% Similarity=0.403 Sum_probs=231.7
Q ss_pred CcCeEEcCCCCCCcccCccceeccc-cC--CChhHHHHHHHHHHHcCCCeEeCCCCcC-----CHHHHHHHHHHHHhcCC
Q 020174 13 NVPEVKLSSASGHRKMPVIGLGSAV-DN--IDESAMKSAVLESIKLGYRHFDTASLYG-----TERALGEAIAEALKLGL 84 (330)
Q Consensus 13 ~m~~~~lg~t~g~~~vs~lglG~~~-~~--~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-----se~~lG~~l~~~~~~g~ 84 (330)
.|+||+||+| | ++||+||||||. ++ .+.+++.++|++|++.|||+||||+.|| ||+.+|++|++.. +.
T Consensus 12 ~m~~r~lg~t-g-~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~--~~ 87 (346)
T PRK09912 12 QMQYRYCGKS-G-LRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF--AA 87 (346)
T ss_pred CcceeecCCC-C-cccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc--cC
Confidence 4889999999 9 999999999996 55 3456678999999999999999999998 6999999998531 11
Q ss_pred CCCCCceEEEeecCC----C----CCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHH
Q 020174 85 VASREELFITTKLWC----S----DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNG 156 (330)
Q Consensus 85 ~~~R~~v~I~tK~~~----~----~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (330)
.|+++||+||++. . +.+++.+++++++||++||+||||+|++|||+...+ .++
T Consensus 88 --~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~-----------------~~e 148 (346)
T PRK09912 88 --YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTP-----------------MEE 148 (346)
T ss_pred --CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC-----------------HHH
Confidence 5999999999752 1 245888999999999999999999999999965332 678
Q ss_pred HHHHHHHHHHcCCcceEecCCCCHHHHHHHHH---hCCCCceeeccccChhhhh---HHHHHHHHhcCCeEEEeccCCcC
Q 020174 157 VWEAMEECQRHGLTKSIGVSNFSPKKIETILA---FATIPPTVNQVEMNPAWQQ---RKLVEFCKSKSIIVTAFSPLGAV 230 (330)
Q Consensus 157 ~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~---~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~via~~~l~~~ 230 (330)
+|++|++|+++||||+||||||++++++++.+ ...++++++|++||++.+. .+++++|+++||++++|+||++
T Consensus 149 ~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~- 227 (346)
T PRK09912 149 TASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQ- 227 (346)
T ss_pred HHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcC-
Confidence 99999999999999999999999998876654 3356788999999998874 4699999999999999999998
Q ss_pred CCCCCCCC----------------------CCC------hHHHHHHHHHhCCCHHHHHHHHHHhcC--CEEeeCCCCHHH
Q 020174 231 GSSWGTNQ----------------------VMN------NEALKQIAAAHGKTVAQVCLRWIIEQG--ATAAVKSFNKER 280 (330)
Q Consensus 231 G~l~~~~~----------------------~~~------~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~ 280 (330)
|+|++... ... .+.+.++|+++|+|++|+||+|++++| .++|+|+++++|
T Consensus 228 G~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~q 307 (346)
T PRK09912 228 GLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQ 307 (346)
T ss_pred ccccCCCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHH
Confidence 99876310 000 156788999999999999999999998 778999999999
Q ss_pred HHHhhcccc-cccCHHHHHHHhccCCC
Q 020174 281 LKENLEIFD-WALTDDDHDKIRQIPQR 306 (330)
Q Consensus 281 l~~nl~~~~-~~L~~~~~~~l~~~~~~ 306 (330)
|++|+++++ ++|+++|++.|+++.++
T Consensus 308 l~en~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 308 LEENVQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHhhCc
Confidence 999999984 79999999999987644
No 9
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=8.4e-55 Score=396.44 Aligned_cols=263 Identities=37% Similarity=0.695 Sum_probs=234.8
Q ss_pred cCeEEcCCCCCCcccCccceeccccCCChhHHHHHHHHHHHcCCCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEE
Q 020174 14 VPEVKLSSASGHRKMPVIGLGSAVDNIDESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFI 93 (330)
Q Consensus 14 m~~~~lg~t~g~~~vs~lglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I 93 (330)
.++++|.+ | ++||+||||||++ +.+++.+++++|++.|+|+||||+.||+|+.+|++|++. ++ +|++++|
T Consensus 4 ~~~~~l~~--g-~~v~~lglG~~~~--~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~~~i 73 (275)
T PRK11565 4 PTVIKLQD--G-NVMPQLGLGVWQA--SNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---SV--AREELFI 73 (275)
T ss_pred CceEEcCC--C-CccCCcceECccC--CHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---CC--CHHHEEE
Confidence 34577854 8 9999999999985 467889999999999999999999999999999999975 54 6999999
Q ss_pred EeecCCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceE
Q 020174 94 TTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSI 173 (330)
Q Consensus 94 ~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~i 173 (330)
+||++.. +++.+++++++||++||+||||+|++|||+...+ ...++|++|++|+++||||+|
T Consensus 74 ~tK~~~~--~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~----------------~~~~~~~~l~~l~~~G~ir~i 135 (275)
T PRK11565 74 TTKLWND--DHKRPREALEESLKKLQLDYVDLYLMHWPVPAID----------------HYVEAWKGMIELQKEGLIKSI 135 (275)
T ss_pred EEEecCc--chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcC----------------cHHHHHHHHHHHHHcCCeeEE
Confidence 9999743 4689999999999999999999999999964221 156899999999999999999
Q ss_pred ecCCCCHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCChHHHHHHHHHhC
Q 020174 174 GVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHG 253 (330)
Q Consensus 174 Gvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~~ 253 (330)
|||||+.+++++++....+.+.++|++|+++.++.+++++|+++||++++|+|+++ |. ...+..+.+.++|+++|
T Consensus 136 GvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~-G~----~~~~~~~~l~~ia~~~g 210 (275)
T PRK11565 136 GVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQ-GG----KGVFDQKVIRDLADKYG 210 (275)
T ss_pred eeccCCHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCC-CC----cccccCHHHHHHHHHhC
Confidence 99999999999998777778899999999998888899999999999999999986 53 12345688999999999
Q ss_pred CCHHHHHHHHHHhcCCEEeeCCCCHHHHHHhhcccccccCHHHHHHHhccCCCCCC
Q 020174 254 KTVAQVCLRWIIEQGATAAVKSFNKERLKENLEIFDWALTDDDHDKIRQIPQRRMM 309 (330)
Q Consensus 254 ~s~~qlal~~~l~~~~~~i~g~~~~~~l~~nl~~~~~~L~~~~~~~l~~~~~~~~~ 309 (330)
+|++|+||+|+++++.++|+|+++++|+++|+++++++|++++++.|+++..+.+.
T Consensus 211 ~s~aq~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~~ 266 (275)
T PRK11565 211 KTPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKRL 266 (275)
T ss_pred CCHHHHHHHHHHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccCCc
Confidence 99999999999999988999999999999999999999999999999999776653
No 10
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=7.6e-54 Score=397.73 Aligned_cols=268 Identities=22% Similarity=0.318 Sum_probs=227.4
Q ss_pred eEEcCCCCCCcccCccceeccccC-----CChhHHHHHHHHHHHcCCCeEeCCCCcC---CHHHHHHHHHHHHhcCCCCC
Q 020174 16 EVKLSSASGHRKMPVIGLGSAVDN-----IDESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGLVAS 87 (330)
Q Consensus 16 ~~~lg~t~g~~~vs~lglG~~~~~-----~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~g~~~~ 87 (330)
||+||+| | ++||+||||||+++ .+.+++.+++++|++.|||+||||+.|| +|..+|++|++. +. .
T Consensus 1 ~r~lg~t-~-~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~~--~ 73 (314)
T PLN02587 1 LRELGST-G-LKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---GI--P 73 (314)
T ss_pred CCcCCCC-C-CcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---CC--C
Confidence 6889999 9 99999999999875 4677899999999999999999999997 699999999864 43 6
Q ss_pred CCceEEEeecCC----CCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHH
Q 020174 88 REELFITTKLWC----SDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEE 163 (330)
Q Consensus 88 R~~v~I~tK~~~----~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 163 (330)
|+++||+||++. .+.+++.+++++++||++||+||||+|++|||+.... .....++|++|++
T Consensus 74 R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~--------------~~~~~~~~~~l~~ 139 (314)
T PLN02587 74 REKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSL--------------DQIVNETIPALQK 139 (314)
T ss_pred cceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcch--------------hhhHHHHHHHHHH
Confidence 999999999874 2467899999999999999999999999999963211 1124689999999
Q ss_pred HHHcCCcceEecCCCCHHHHHHHHHhC---CCCceeeccccChhhhh-HHHHHHHHhcCCeEEEeccCCcCCCCCCCCCC
Q 020174 164 CQRHGLTKSIGVSNFSPKKIETILAFA---TIPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQV 239 (330)
Q Consensus 164 l~~~GkIr~iGvs~~~~~~l~~~~~~~---~~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~ 239 (330)
|+++||||+||+|||++++++.+.+.. .+.++++|++|++..+. .+++++|+++||++++|+||++ |+|+++...
T Consensus 140 l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~-G~L~~~~~~ 218 (314)
T PLN02587 140 LKESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAM-GLLTENGPP 218 (314)
T ss_pred HHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhc-cccCCCCCC
Confidence 999999999999999998887766532 24555678888887653 5899999999999999999998 998864210
Q ss_pred -C--C-------hHHHHHHHHHhCCCHHHHHHHHHHhcC--CEEeeCCCCHHHHHHhhcccc----cccCHHHHHHHhcc
Q 020174 240 -M--N-------NEALKQIAAAHGKTVAQVCLRWIIEQG--ATAAVKSFNKERLKENLEIFD----WALTDDDHDKIRQI 303 (330)
Q Consensus 240 -~--~-------~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~~~~----~~L~~~~~~~l~~~ 303 (330)
. . .+.+.++|+++++|++|+||+|++++| +++|+|+++++|+++|+++++ .+|+++++++|+++
T Consensus 219 ~~~~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~ 298 (314)
T PLN02587 219 EWHPAPPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAI 298 (314)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHh
Confidence 0 0 134678999999999999999999998 578999999999999999976 37999999999987
Q ss_pred CC
Q 020174 304 PQ 305 (330)
Q Consensus 304 ~~ 305 (330)
..
T Consensus 299 ~~ 300 (314)
T PLN02587 299 LA 300 (314)
T ss_pred hc
Confidence 64
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.3e-53 Score=391.02 Aligned_cols=263 Identities=40% Similarity=0.610 Sum_probs=236.2
Q ss_pred eEEcCCCCCCcccCccceeccccCC---ChhHHHHHHHHHHHcCCCeEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCC
Q 020174 16 EVKLSSASGHRKMPVIGLGSAVDNI---DESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGLVASRE 89 (330)
Q Consensus 16 ~~~lg~t~g~~~vs~lglG~~~~~~---~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~g~~~~R~ 89 (330)
+|+||+| | .+||+|||||+.++. +.+++.+++++|++.|||+||||+.|| ||+.+|++|+.. + .|+
T Consensus 1 ~r~lg~t-g-~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~---~R~ 72 (285)
T cd06660 1 YRTLGKT-G-LKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G---PRE 72 (285)
T ss_pred CcccCCC-C-ceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C---CcC
Confidence 5789988 9 999999999999873 568899999999999999999999999 899999999964 2 499
Q ss_pred ceEEEeecCCCC-----CChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHH
Q 020174 90 ELFITTKLWCSD-----AHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEEC 164 (330)
Q Consensus 90 ~v~I~tK~~~~~-----~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 164 (330)
+++|+||++... .+++.+++++++||++||+||||+|++|||+.... ...++|++|+++
T Consensus 73 ~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~----------------~~~~~~~~l~~l 136 (285)
T cd06660 73 EVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTP----------------DIEETLRALEEL 136 (285)
T ss_pred cEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCC----------------CHHHHHHHHHHH
Confidence 999999998654 57899999999999999999999999999975332 267999999999
Q ss_pred HHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhhH--HHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCC-
Q 020174 165 QRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQR--KLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMN- 241 (330)
Q Consensus 165 ~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~--~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~- 241 (330)
+++|+||+||||+|+.+.++++++.+..+++++|++||++.+.. +++++|+++||++++|+||++ |.+++......
T Consensus 137 ~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~-g~l~~~~~~~~~ 215 (285)
T cd06660 137 VKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG-GLLTGKYLPGAP 215 (285)
T ss_pred HHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccC-ceecCCCCCCCC
Confidence 99999999999999999999999887778999999999998875 499999999999999999998 88765433221
Q ss_pred ------hHHHHHHHHHhCCCHHHHHHHHHHhcC--CEEeeCCCCHHHHHHhhcccccccCHHHHHHHhcc
Q 020174 242 ------NEALKQIAAAHGKTVAQVCLRWIIEQG--ATAAVKSFNKERLKENLEIFDWALTDDDHDKIRQI 303 (330)
Q Consensus 242 ------~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~~~~~~L~~~~~~~l~~~ 303 (330)
...+..+++++++|++|+|++|++++| .++++|+++++|+++|+++..++|++++++.|+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 216 PPEGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred CChhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 366889999999999999999999996 88899999999999999999899999999999863
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2e-51 Score=377.32 Aligned_cols=257 Identities=24% Similarity=0.356 Sum_probs=220.3
Q ss_pred eEEcCCCCCCcccCccceeccccCC--------ChhHHHHHHHHHHHcCCCeEeCCCCcC---CHHHHHHHHHHHHhcCC
Q 020174 16 EVKLSSASGHRKMPVIGLGSAVDNI--------DESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGL 84 (330)
Q Consensus 16 ~~~lg~t~g~~~vs~lglG~~~~~~--------~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~g~ 84 (330)
+++|+ | ++||+||||||+++. +.+++.++|++|++.|||+||||+.|| +|+.+|++++.
T Consensus 9 ~~~l~---g-~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~------ 78 (290)
T PRK10376 9 TFTLG---G-RSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP------ 78 (290)
T ss_pred ceecC---C-eeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc------
Confidence 45665 6 999999999998752 457789999999999999999999998 68899999862
Q ss_pred CCCCCceEEEeecCC---------CCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHH
Q 020174 85 VASREELFITTKLWC---------SDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYN 155 (330)
Q Consensus 85 ~~~R~~v~I~tK~~~---------~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 155 (330)
.|+++||+||++. .+.+++.+++++++||++||+||||+|++|++....... .....
T Consensus 79 --~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~------------~~~~~ 144 (290)
T PRK10376 79 --YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPA------------EGSIE 144 (290)
T ss_pred --CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCC------------CCCHH
Confidence 5899999999842 345688999999999999999999999999963211000 12367
Q ss_pred HHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhh-HHHHHHHHhcCCeEEEeccCCcCCCCC
Q 020174 156 GVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVTAFSPLGAVGSSW 234 (330)
Q Consensus 156 ~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~via~~~l~~~G~l~ 234 (330)
++|++|++|+++||||+||||||+.++++++.+.. ++.++|++||+..+. .+++++|+++||++++|+||++ +.
T Consensus 145 ~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g-~~-- 219 (290)
T PRK10376 145 EPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIA--EIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGG-FT-- 219 (290)
T ss_pred HHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhhC--CeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCC-CC--
Confidence 89999999999999999999999999999988765 467899999998865 6799999999999999999974 31
Q ss_pred CCCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcC--CEEeeCCCCHHHHHHhhcccccccCHHHHHHHhccCC
Q 020174 235 GTNQVMNNEALKQIAAAHGKTVAQVCLRWIIEQG--ATAAVKSFNKERLKENLEIFDWALTDDDHDKIRQIPQ 305 (330)
Q Consensus 235 ~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~~~~~~L~~~~~~~l~~~~~ 305 (330)
....+.+.++|+++++|++|+||+|+++++ +++|+|+++++|+++|+++++++|++++++.|+++.+
T Consensus 220 ----~~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 220 ----PLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 123578999999999999999999999874 7789999999999999999999999999999998744
No 13
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=4.5e-52 Score=380.49 Aligned_cols=253 Identities=36% Similarity=0.648 Sum_probs=217.6
Q ss_pred ccceeccccC---CChhHHHHHHHHHHHcCCCeEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCCceEEEeec-----C
Q 020174 30 VIGLGSAVDN---IDESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGLVASREELFITTKL-----W 98 (330)
Q Consensus 30 ~lglG~~~~~---~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~g~~~~R~~v~I~tK~-----~ 98 (330)
+||||||+++ .+.+++.++|+.|++.|||+||||+.|| ||+.+|++|++. +. +|++++|+||+ +
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~---~~--~r~~~~i~tK~~~~~~~ 75 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKS---RV--PRDDIFISTKVYGDGKP 75 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHT---SS--TGGGSEEEEEEESSSST
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccc---cc--ccccccccccccccccc
Confidence 5899999985 6889999999999999999999999993 899999999982 33 89999999999 5
Q ss_pred CCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCC
Q 020174 99 CSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNF 178 (330)
Q Consensus 99 ~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~ 178 (330)
....+++.+++++++||++||+||||+|++|||+.... ...++|++|++|+++|+||+||||||
T Consensus 76 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~----------------~~~~~~~~l~~l~~~G~ir~iGvs~~ 139 (283)
T PF00248_consen 76 EPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSED----------------ALEEVWEALEELKKEGKIRHIGVSNF 139 (283)
T ss_dssp GGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSS----------------HHHHHHHHHHHHHHTTSEEEEEEES-
T ss_pred cccccccccccccccccccccccchhcccccccccccc----------------ccchhhhhhhhccccccccccccccc
Confidence 56778999999999999999999999999999975432 26899999999999999999999999
Q ss_pred CHHHHHHHHHhCCCCceeeccccChh--hhhHHHHHHHHhcCCeEEEeccCCcCCCCCCCCCC--------------CCh
Q 020174 179 SPKKIETILAFATIPPTVNQVEMNPA--WQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQV--------------MNN 242 (330)
Q Consensus 179 ~~~~l~~~~~~~~~~~~~~q~~~~~~--~~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~--------------~~~ 242 (330)
+++.++.+.....++|+++|++||++ ....+++++|+++||++++|+|+++ |++++.... ...
T Consensus 140 ~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~-G~l~~~~~~~~~~~~~~~~~~~~~~~ 218 (283)
T PF00248_consen 140 SPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAG-GLLTGKYKSPPPPPSRASLRDAQELA 218 (283)
T ss_dssp -HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG-GCGGTTTTTTTTSTTTSGSSTHGGGH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-CccccccccCCCcccccccchhhhhh
Confidence 99999999777888999999999999 3348999999999999999999998 888643211 345
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcC--CEEeeCCCCHHHHHHhhcccccccCHHHHHHHhccC
Q 020174 243 EALKQIAAAHGKTVAQVCLRWIIEQG--ATAAVKSFNKERLKENLEIFDWALTDDDHDKIRQIP 304 (330)
Q Consensus 243 ~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~~~~~~L~~~~~~~l~~~~ 304 (330)
+.+.++++++++|++|+||+|+++++ .++|+|+++++|+++|+++++++||++|++.|+++.
T Consensus 219 ~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 219 DALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 78999999999999999999999875 899999999999999999999999999999999873
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1.5e-49 Score=364.45 Aligned_cols=249 Identities=18% Similarity=0.214 Sum_probs=211.6
Q ss_pred cccCccceeccccCC------------ChhHHHHHHHHHHHcCCCeEeCCCCcC-CHHHHHHHHHHHHhcCCCCCCCceE
Q 020174 26 RKMPVIGLGSAVDNI------------DESAMKSAVLESIKLGYRHFDTASLYG-TERALGEAIAEALKLGLVASREELF 92 (330)
Q Consensus 26 ~~vs~lglG~~~~~~------------~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-se~~lG~~l~~~~~~g~~~~R~~v~ 92 (330)
++||+||||||.+|. +.+++.++|++|++.|||+||||+.|| ||+.+|++|+.. .+++++
T Consensus 3 ~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~-------~~~~~~ 75 (292)
T PRK14863 3 SPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP-------VPFRVT 75 (292)
T ss_pred CcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC-------CceEee
Confidence 889999999998762 567899999999999999999999999 899999999731 356789
Q ss_pred EEeecCCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcce
Q 020174 93 ITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKS 172 (330)
Q Consensus 93 I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~ 172 (330)
|+||.. +.+++.+++++++||+|||+||||+|++|||+.... ....++|++|++|+++||||+
T Consensus 76 i~tk~~--~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~---------------~~~~~~~~~l~~l~~~Gkir~ 138 (292)
T PRK14863 76 LSTVRA--DRGPDFVEAEARASLRRMGVERADAILVHSPTELFG---------------PHGAALWERLQALKDQGLFAK 138 (292)
T ss_pred cccccc--cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcC---------------cchHHHHHHHHHHHHcCCcce
Confidence 999853 356889999999999999999999999999964211 012578999999999999999
Q ss_pred EecCCCCHHHHHHHHHhCCCCceeeccccChhhhh---HHHHHHHHhcCCeEEEeccCCcCCCCCCCCCC----C-----
Q 020174 173 IGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ---RKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQV----M----- 240 (330)
Q Consensus 173 iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~----~----- 240 (330)
||||||+++++..+... .+++++|++||+++++ .+++++|+++||++++|+||++ |+|+++... +
T Consensus 139 iGvSn~~~~~~~~~~~~--~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~~~~~ 215 (292)
T PRK14863 139 IGVSAHASDDPVGVARR--FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLN-GLLFLPPDRVPAQLKGASG 215 (292)
T ss_pred EeeeccCHHHHHHHHhc--CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhC-ccccCCcccCccchhhhhH
Confidence 99999999888877543 4788999999999885 3599999999999999999998 988754211 1
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHHHHhcC--CEEeeCCCCHHHHHHhhcccccccCHHHHHHHh
Q 020174 241 NNEALKQIAAAHGKTVAQVCLRWIIEQG--ATAAVKSFNKERLKENLEIFDWALTDDDHDKIR 301 (330)
Q Consensus 241 ~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~~~~~~L~~~~~~~l~ 301 (330)
....+.++++++++|++|+||+|++++| +++|+|+++++|+++|+++...++++..++.|.
T Consensus 216 ~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~ 278 (292)
T PRK14863 216 RLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMA 278 (292)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhcc
Confidence 1134566788889999999999999998 678999999999999999998899988887775
No 15
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=9.2e-49 Score=353.03 Aligned_cols=285 Identities=22% Similarity=0.299 Sum_probs=243.6
Q ss_pred cCeEEcCCCCCCcccCccceeccccCC------ChhHHHHHHHHHHHcCCCeEeCCCCc--C-CHHHHHHHHHHHHhcCC
Q 020174 14 VPEVKLSSASGHRKMPVIGLGSAVDNI------DESAMKSAVLESIKLGYRHFDTASLY--G-TERALGEAIAEALKLGL 84 (330)
Q Consensus 14 m~~~~lg~t~g~~~vs~lglG~~~~~~------~~~~~~~~l~~A~~~Gi~~~DtA~~Y--g-se~~lG~~l~~~~~~g~ 84 (330)
|.||++++| | .++|.||||+|++.. +.+.+.+++++|++.|||+||||..| | ||..+|++|++.
T Consensus 1 Mlyr~~~k~-g-~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~----- 73 (391)
T COG1453 1 MLYRKFPKT-G-DELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG----- 73 (391)
T ss_pred CchhhcCCC-C-cccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc-----
Confidence 789999999 9 999999999999873 77889999999999999999999999 7 899999999974
Q ss_pred CCCCCceEEEeecCCC-CCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHH
Q 020174 85 VASREELFITTKLWCS-DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEE 163 (330)
Q Consensus 85 ~~~R~~v~I~tK~~~~-~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 163 (330)
.|++|+++||+... -.+++.+++-++++|++||+||+|+|++|.... +.+.+....+.++++++
T Consensus 74 --~Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-------------e~~~k~~~~g~~df~~k 138 (391)
T COG1453 74 --YREKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-------------ETWEKIERLGVFDFLEK 138 (391)
T ss_pred --ccceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-------------HHHHHHHccChHHHHHH
Confidence 79999999999632 346789999999999999999999999999853 22223333457999999
Q ss_pred HHHcCCcceEecCCCC-HHHHHHHHHhCCCCceeeccccChhhhh----HHHHHHHHhcCCeEEEeccCCcCCCCCCCCC
Q 020174 164 CQRHGLTKSIGVSNFS-PKKIETILAFATIPPTVNQVEMNPAWQQ----RKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQ 238 (330)
Q Consensus 164 l~~~GkIr~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~----~~~l~~~~~~gi~via~~~l~~~G~l~~~~~ 238 (330)
+|++||||++|+|.|+ .+.+.+++.... ++++|++||.+++. .+.+++|.++|++|+.++|+.+ |.+..+
T Consensus 139 ak~eGkIr~~GFSfHgs~e~~~~iv~a~~--~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~g-G~l~~~-- 213 (391)
T COG1453 139 AKAEGKIRNAGFSFHGSTEVFKEIVDAYP--WDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDG-GGLLYN-- 213 (391)
T ss_pred HHhcCcEEEeeecCCCCHHHHHHHHhcCC--cceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCC-CCcccC--
Confidence 9999999999999998 566788887764 67888888888765 2789999999999999999998 554331
Q ss_pred CCChHHHHHHHHHhC--CCHHHHHHHHHHhcC--CEEeeCCCCHHHHHHhhccccc--c-cCHHHHHHHhcc---CCCCC
Q 020174 239 VMNNEALKQIAAAHG--KTVAQVCLRWIIEQG--ATAAVKSFNKERLKENLEIFDW--A-LTDDDHDKIRQI---PQRRM 308 (330)
Q Consensus 239 ~~~~~~l~~la~~~~--~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~~~~~--~-L~~~~~~~l~~~---~~~~~ 308 (330)
-.+++.++++++. .||+..|+||++++| .++++|+++++|++||++.++. | ||++|++.|.++ .....
T Consensus 214 --vP~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~~~~~ 291 (391)
T COG1453 214 --VPEKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEIYRESL 291 (391)
T ss_pred --CCHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHh
Confidence 2468999999875 799999999999999 7888999999999999998773 4 999987777554 55556
Q ss_pred CCCCCcccCCCCCCCCcCc
Q 020174 309 MPRDDFIIPHGPFKTPEDL 327 (330)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~ 327 (330)
.-+...|..|-|||++++|
T Consensus 292 ~v~Ct~C~yC~PCP~gInI 310 (391)
T COG1453 292 KVPCTGCRYCLPCPSGINI 310 (391)
T ss_pred cCCCccccccCcCCCCCCh
Confidence 6679999999999999987
No 16
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=3.6e-48 Score=331.82 Aligned_cols=266 Identities=27% Similarity=0.457 Sum_probs=236.3
Q ss_pred cCeEEcCCCCCCcccCccceeccccC---CChhHHHHHHHHHHHcCCCeEeCCCCcC---CHHHHHHHHHHHHhcCCCCC
Q 020174 14 VPEVKLSSASGHRKMPVIGLGSAVDN---IDESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGLVAS 87 (330)
Q Consensus 14 m~~~~lg~t~g~~~vs~lglG~~~~~---~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~g~~~~ 87 (330)
|++.+|++. | +++|++.+|+|++. .+.++...++..|++.|||+||-|+.|| .|+++|.+|+.. .+ -
T Consensus 1 m~rI~l~~~-~-~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~--p~---l 73 (298)
T COG4989 1 MQRITLAPD-G-LEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA--PG---L 73 (298)
T ss_pred CceEEecCC-C-ccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC--hh---h
Confidence 678999986 7 99999999999987 5667889999999999999999999999 699999999854 23 6
Q ss_pred CCceEEEeecCC------------CCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHH
Q 020174 88 REELFITTKLWC------------SDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYN 155 (330)
Q Consensus 88 R~~v~I~tK~~~------------~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 155 (330)
|+++.|.||.+. .+.+.++|..++|+||++|+|||+|++++|+||.- ++.+
T Consensus 74 RekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpL-----------------md~e 136 (298)
T COG4989 74 REKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPL-----------------MDAE 136 (298)
T ss_pred hhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCccc-----------------CCHH
Confidence 999999999853 25678999999999999999999999999999863 4578
Q ss_pred HHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhh---HHHHHHHHhcCCeEEEeccCCcCCC
Q 020174 156 GVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ---RKLVEFCKSKSIIVTAFSPLGAVGS 232 (330)
Q Consensus 156 ~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~via~~~l~~~G~ 232 (330)
++.+++..|.+.||+|++|||||++.+.+-+-..-..+.+.||+++|++... ...+++|+.+.|.+++||||+++|.
T Consensus 137 eVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~ 216 (298)
T COG4989 137 EVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGL 216 (298)
T ss_pred HHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCcc
Confidence 9999999999999999999999999999988777777889999999999875 5699999999999999999998444
Q ss_pred CCCCCCCCC--hHHHHHHHHHhC-CCHHHHHHHHHHhcC--CEEeeCCCCHHHHHHhhcccccccCHHHHHHHhccC
Q 020174 233 SWGTNQVMN--NEALKQIAAAHG-KTVAQVCLRWIIEQG--ATAAVKSFNKERLKENLEIFDWALTDDDHDKIRQIP 304 (330)
Q Consensus 233 l~~~~~~~~--~~~l~~la~~~~-~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~~~~~~L~~~~~~~l~~~~ 304 (330)
+.+ .+.+. ...+..+|+++| .|.++++++|++.+| ..+|+|+.|++++++.++++++.|+.++|-+|-...
T Consensus 217 F~g-~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa 292 (298)
T COG4989 217 FLG-DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAA 292 (298)
T ss_pred ccC-CcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHh
Confidence 444 33332 478999999999 799999999999999 788999999999999999999999999999986553
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=7.1e-44 Score=307.58 Aligned_cols=269 Identities=22% Similarity=0.258 Sum_probs=220.6
Q ss_pred CCCCcCccCCCcCeEEcCCCCCCcccCccceeccccC-----CChhHHHHHHHHHHHcCCCeEeCCCCcC---CHHHHHH
Q 020174 3 ANSEPMNVSINVPEVKLSSASGHRKMPVIGLGSAVDN-----IDESAMKSAVLESIKLGYRHFDTASLYG---TERALGE 74 (330)
Q Consensus 3 ~~~~~~~~~~~m~~~~lg~t~g~~~vs~lglG~~~~~-----~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~ 74 (330)
+..|...-++.|+||.||+| | ++||+||||+..++ .+.++....+..|+.+|||+||||+-|| ||+.+|.
T Consensus 11 ~~fhde~~vrrmeyR~lg~t-g-l~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~ 88 (342)
T KOG1576|consen 11 KGFHDEEKVRRMEYRQLGST-G-LRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGL 88 (342)
T ss_pred cccCcHHHHHHHHHhhcCCC-c-ceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHH
Confidence 45666666888999999999 9 99999999998766 3666777777789999999999999999 8999999
Q ss_pred HHHHHHhcCCCCCCCceEEEeecCC--------CCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCc
Q 020174 75 AIAEALKLGLVASREELFITTKLWC--------SDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPE 146 (330)
Q Consensus 75 ~l~~~~~~g~~~~R~~v~I~tK~~~--------~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 146 (330)
++++. +|+.+||+||++. .+++++.+++++++||+||++||+|++++|..++....
T Consensus 89 al~~v-------PR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~l--------- 152 (342)
T KOG1576|consen 89 ALKDV-------PREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNL--------- 152 (342)
T ss_pred HHhhC-------ChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccc---------
Confidence 99976 9999999999963 47889999999999999999999999999998764221
Q ss_pred cccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCC--CCceeeccccChhhhh-HHHHHHHHhcCCeEEE
Q 020174 147 EDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFAT--IPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVTA 223 (330)
Q Consensus 147 ~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~--~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~via 223 (330)
...+.+++.+|+++|++||||+||++.+..+-+....+... ++.+..-.+|++.+.. -..+++.+.+|++|+.
T Consensus 153 ----d~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~ 228 (342)
T KOG1576|consen 153 ----DIVLNETLPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVIN 228 (342)
T ss_pred ----cHHHHHHHHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEe
Confidence 23478999999999999999999999999998888876654 3333333555544333 3567778899999999
Q ss_pred eccCCcCCCCCCC--CCC-CCh-------HHHHHHHHHhCCCHHHHHHHHHHhcC--CEEeeCCCCHHHHHHhhcccccc
Q 020174 224 FSPLGAVGSSWGT--NQV-MNN-------EALKQIAAAHGKTVAQVCLRWIIEQG--ATAAVKSFNKERLKENLEIFDWA 291 (330)
Q Consensus 224 ~~~l~~~G~l~~~--~~~-~~~-------~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~~~~~~ 291 (330)
-++++. |+|+.. ..- ... ....+.|++.|++++.+|+.|.++.+ .++++|+++.++++.|+++..-.
T Consensus 229 Asalsm-gLLt~~gp~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ 307 (342)
T KOG1576|consen 229 ASALSM-GLLTNQGPPPWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDR 307 (342)
T ss_pred hhhHHH-HHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhcc
Confidence 999998 999732 211 122 33445677789999999999999987 89999999999999999975557
Q ss_pred cCH
Q 020174 292 LTD 294 (330)
Q Consensus 292 L~~ 294 (330)
||.
T Consensus 308 ls~ 310 (342)
T KOG1576|consen 308 LSS 310 (342)
T ss_pred ccc
Confidence 777
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.41 E-value=5.8e-07 Score=77.71 Aligned_cols=76 Identities=24% Similarity=0.417 Sum_probs=69.6
Q ss_pred ccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhh-HHHHHHHHhcCCeEEEeccC
Q 020174 152 LDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVTAFSPL 227 (330)
Q Consensus 152 ~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~via~~~l 227 (330)
-.+.+.|+.||++..+|||..||+|.|++.+|++++..+.+.|.++|+++.-++.- .++..||.+|+|.+..++--
T Consensus 153 e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHsDP 229 (285)
T KOG3023|consen 153 ESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHSDP 229 (285)
T ss_pred HHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecCCc
Confidence 44678999999999999999999999999999999999999999999999887664 78999999999999998744
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=88.79 E-value=6.1 Score=33.89 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=71.8
Q ss_pred HHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHH
Q 020174 109 PALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILA 188 (330)
Q Consensus 109 ~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~ 188 (330)
..+++.|..+.-+.+|.+.+..--. ......+.|+++.+-|+=--|++.||..+...--+-
T Consensus 62 ~Dld~gL~~f~d~sFD~VIlsqtLQ-------------------~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~ 122 (193)
T PF07021_consen 62 GDLDEGLADFPDQSFDYVILSQTLQ-------------------AVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLL 122 (193)
T ss_pred CCHHHhHhhCCCCCccEEehHhHHH-------------------hHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHH
Confidence 3466677777777888877764210 022233557778888988889999999887665544
Q ss_pred hCCCCceeeccccChhhhh-------HHHHHHHHhcCCeEEEeccCCc
Q 020174 189 FATIPPTVNQVEMNPAWQQ-------RKLVEFCKSKSIIVTAFSPLGA 229 (330)
Q Consensus 189 ~~~~~~~~~q~~~~~~~~~-------~~~l~~~~~~gi~via~~~l~~ 229 (330)
..+-.|+.-.++|.-++.. ++.-++|++.|+.|.-..++..
T Consensus 123 ~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 123 LRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred hcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 3344566677777655432 7899999999999999999876
No 20
>PLN02489 homocysteine S-methyltransferase
Probab=86.83 E-value=28 Score=32.72 Aligned_cols=216 Identities=13% Similarity=0.114 Sum_probs=117.3
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCcC-C--------------HHHHHHHHH---HHHhc---C----------CCCCCC
Q 020174 41 DESAMKSAVLESIKLGYRHFDTASLYG-T--------------ERALGEAIA---EALKL---G----------LVASRE 89 (330)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-s--------------e~~lG~~l~---~~~~~---g----------~~~~R~ 89 (330)
.++...++-+..+++|-+.|-|. .|+ | +++.-.+++ +.... . ....+.
T Consensus 53 ~Pe~V~~vH~~yl~AGAdvI~Tn-Ty~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~ 131 (335)
T PLN02489 53 SPHLIRKVHLDYLEAGADIIITA-SYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYR 131 (335)
T ss_pred CHHHHHHHHHHHHHhCCCEEEec-ccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCC
Confidence 45555666666779999999887 453 2 112222222 11100 0 000134
Q ss_pred ceEEEeecCCCC----------------CChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCcccccccc
Q 020174 90 ELFITTKLWCSD----------------AHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLD 153 (330)
Q Consensus 90 ~v~I~tK~~~~~----------------~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 153 (330)
+++|+.-+++.. .+.+.+.+.....++.|--.-+|++.+-... +
T Consensus 132 ~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~--------------------~ 191 (335)
T PLN02489 132 PILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIP--------------------N 191 (335)
T ss_pred CcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccC--------------------C
Confidence 688888886521 3446677777777777744569999998652 2
Q ss_pred HHHHHHHHHHHHHcC--CcceEecCCC---------CHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhc-CCeE
Q 020174 154 YNGVWEAMEECQRHG--LTKSIGVSNF---------SPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSK-SIIV 221 (330)
Q Consensus 154 ~~~~~~~L~~l~~~G--kIr~iGvs~~---------~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~-gi~v 221 (330)
..++..+++.+++.+ +--.+.++.. +...+...+... ..+..+-+|+.....-..+++..+.. .+.+
T Consensus 192 l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~-~~~~~iGiNC~~p~~~~~~l~~l~~~~~~pl 270 (335)
T PLN02489 192 KLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSC-KKVVAVGINCTPPRFIHGLILSIRKVTSKPI 270 (335)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhc-CCceEEEecCCCHHHHHHHHHHHHhhcCCcE
Confidence 567777777777665 4444555431 122222222221 24567778886432224555555544 6777
Q ss_pred EEeccCCcCCCCCCCCCCCChHHHHHHHHHhCCC---HHHHHHHHHHhcCCEEeeCC--CCHHHHHHhhcccc
Q 020174 222 TAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGKT---VAQVCLRWIIEQGATAAVKS--FNKERLKENLEIFD 289 (330)
Q Consensus 222 ia~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s---~~qlal~~~l~~~~~~i~g~--~~~~~l~~nl~~~~ 289 (330)
++|--- |..+.... ..+...++.+ .++.+.+|.- .|+.+|=|+ ++|+|+++.-+.++
T Consensus 271 ~vyPNa---G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~Ga~iIGGCCgt~P~hI~al~~~l~ 332 (335)
T PLN02489 271 VVYPNS---GETYDGEA-------KEWVESTGVSDEDFVSYVNKWRD-AGASLIGGCCRTTPNTIRAISKALS 332 (335)
T ss_pred EEECCC---CCCCCCcc-------CcccCCCCCCHHHHHHHHHHHHH-CCCcEEeeCCCCCHHHHHHHHHHHh
Confidence 776543 32221100 0000112333 3567788864 476655444 89999998776554
No 21
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=86.03 E-value=33 Score=32.84 Aligned_cols=148 Identities=22% Similarity=0.264 Sum_probs=93.0
Q ss_pred ceeccccCCChhHHHHHHHHHHHcCCC-eEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEee--------c--CCC
Q 020174 32 GLGSAVDNIDESAMKSAVLESIKLGYR-HFDTASLYGTERALGEAIAEALKLGLVASREELFITTK--------L--WCS 100 (330)
Q Consensus 32 glG~~~~~~~~~~~~~~l~~A~~~Gi~-~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK--------~--~~~ 100 (330)
-+||.....+.+.-.+-++.|++.|-. ..|-+. .|.-..+-+.+-+. ..+-|-|= . ...
T Consensus 66 NIGtS~~~~d~~~E~~K~~~A~~~GADtiMDLSt-Ggdl~~iR~~il~~---------s~vpvGTVPiYqa~~~~~~~~~ 135 (423)
T TIGR00190 66 NIGTSADTSDIEEEVEKALIAIKYGADTVMDLST-GGDLDEIRKAILDA---------VPVPVGTVPIYQAAEKVHGAVE 135 (423)
T ss_pred eecCCCCCCCHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHc---------CCCCccCccHHHHHHHhcCChh
Confidence 344443335555556778999999985 667773 46544444444321 11112111 0 223
Q ss_pred CCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCH
Q 020174 101 DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSP 180 (330)
Q Consensus 101 ~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~ 180 (330)
+.+++.+.+.+|+..+ |=+|.+-+|.- -..+.++.+++.|+ ..|+-+-..
T Consensus 136 ~mt~d~~~~~ie~qa~----dGVDfmTiH~G------------------------i~~~~~~~~~~~~R--~~giVSRGG 185 (423)
T TIGR00190 136 DMDEDDMFRAIEKQAK----DGVDFMTIHAG------------------------VLLEYVERLKRSGR--ITGIVSRGG 185 (423)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEccc------------------------hhHHHHHHHHhCCC--ccCeecCcH
Confidence 5667778777777765 45788999974 24578889999884 667777777
Q ss_pred HHHHHHHHhCCCCceeeccccChhhhh-HHHHHHHHhcCCeEEEeccC
Q 020174 181 KKIETILAFATIPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVTAFSPL 227 (330)
Q Consensus 181 ~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~via~~~l 227 (330)
.-+..++.... .-||+..+ .++++.|+++++.+---..|
T Consensus 186 s~~~~WM~~~~--------~ENPlye~fD~lLeI~~~yDVtlSLGDgl 225 (423)
T TIGR00190 186 AILAAWMLHHH--------KENPLYKNFDYILEIAKEYDVTLSLGDGL 225 (423)
T ss_pred HHHHHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeeeccCCc
Confidence 77777765532 23455444 67999999999988553333
No 22
>PRK08392 hypothetical protein; Provisional
Probab=85.64 E-value=23 Score=30.75 Aligned_cols=179 Identities=14% Similarity=0.130 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCCCeEeCCCCcC--CHHHHHHHHHHHHhcCCCCCCCce--EEEeecCCCCCChhhHHHHHHHHHhhcCC
Q 020174 45 MKSAVLESIKLGYRHFDTASLYG--TERALGEAIAEALKLGLVASREEL--FITTKLWCSDAHRDLVVPALKKSLKTLQI 120 (330)
Q Consensus 45 ~~~~l~~A~~~Gi~~~DtA~~Yg--se~~lG~~l~~~~~~g~~~~R~~v--~I~tK~~~~~~~~~~i~~~le~sL~~Lg~ 120 (330)
..+.+..|.+.|++.|=.+++.- ...-+...+++..+.. .+.++ ++..=+... ++. ....++.+++ .
T Consensus 16 ~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~---~~~~i~il~GiE~~~~---~~~-~~~~~~~~~~--~ 86 (215)
T PRK08392 16 VRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWG---EESEIVVLAGIEANIT---PNG-VDITDDFAKK--L 86 (215)
T ss_pred HHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHh---hccCceEEEeEEeeec---CCc-chhHHHHHhh--C
Confidence 57889999999999886666642 1122223333221111 12223 222222211 111 2333344443 4
Q ss_pred CccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCC-------CC-HHHHHHHHHh---
Q 020174 121 EYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSN-------FS-PKKIETILAF--- 189 (330)
Q Consensus 121 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~-------~~-~~~l~~~~~~--- 189 (330)
||+ +.-+|.+.. + .......+.+.++.+.+.+.-+|=-. .. .+.++++++.
T Consensus 87 D~v-I~SvH~~~~--~---------------~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~ 148 (215)
T PRK08392 87 DYV-IASVHEWFG--R---------------PEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEA 148 (215)
T ss_pred CEE-EEEeecCcC--C---------------cHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHH
Confidence 555 666785321 1 01356778888888889877666321 11 1333444333
Q ss_pred CCCCceeeccccChhhhhHHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCChHHHHHHHHHhCCCHHHH
Q 020174 190 ATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGKTVAQV 259 (330)
Q Consensus 190 ~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~ql 259 (330)
.+....+| -....+..++++.|++.|+.++.-|--.. +..+-.-+...+++++.|.++.++
T Consensus 149 ~g~~lEiN---t~~~~p~~~~l~~~~~~G~~~~igSDAH~------~~~vg~~~~a~~~~~~~g~~~~~~ 209 (215)
T PRK08392 149 YGKAFEIS---SRYRVPDLEFIRECIKRGIKLTFASDAHR------PEDVGNVSWSLKVFKKAGGKKEDL 209 (215)
T ss_pred hCCEEEEe---CCCCCCCHHHHHHHHHcCCEEEEeCCCCC------hHHCCcHHHHHHHHHHcCCCHHHe
Confidence 22323333 22223446789999999987655443322 112212345677777878777653
No 23
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=84.29 E-value=28 Score=30.75 Aligned_cols=170 Identities=9% Similarity=0.067 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHHcCCCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhcCCC
Q 020174 42 ESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIE 121 (330)
Q Consensus 42 ~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d 121 (330)
.....+++.+|.+.|+..|=.+++...........+.. .+=+|+...-+. ..+++. ++..+++.. .
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~-------~~i~Il~GiEi~--~~~~~~----~~~~~~~~~-~ 80 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDL-------LGFEIFRGVEIV--ASNPSK----LRGLVGKFR-K 80 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHh-------cCCcEEeeEEEe--cCCHHH----HHHHHHhcc-C
Confidence 44578999999999999876666533110000011111 111122222221 122233 333333322 3
Q ss_pred ccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCC---C---HHHHHHHHHhCCCCce
Q 020174 122 YVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNF---S---PKKIETILAFATIPPT 195 (330)
Q Consensus 122 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~---~---~~~l~~~~~~~~~~~~ 195 (330)
.+|++.+| |. .+.+ ...+.+.+.+.-||-... . ...+.++....+ +
T Consensus 81 ~~d~v~v~-~~---------------------~~~~---~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g---v 132 (237)
T PRK00912 81 KVDVLAVH-GG---------------------DEKV---NRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN---V 132 (237)
T ss_pred cccEEEEe-CC---------------------CHHH---HHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC---e
Confidence 57888888 21 1122 235777888888886532 1 122222322222 3
Q ss_pred eeccccChhh------------hhHHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCChHHHHHHHHHhCCCHHHH
Q 020174 196 VNQVEMNPAW------------QQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGKTVAQV 259 (330)
Q Consensus 196 ~~q~~~~~~~------------~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~ql 259 (330)
++.++++++. +...++..|++.|+.++.-|--.. +..+........+++..|.+..++
T Consensus 133 ~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~------~~~l~~~~~~~~l~~~~Gl~~~~~ 202 (237)
T PRK00912 133 AIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMS------CYDLRSPREMIALAELFGMEEDEA 202 (237)
T ss_pred EEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc------ccccCCHHHHHHHHHHcCCCHHHH
Confidence 4445555431 114689999999998876554332 233445567788888888776554
No 24
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=80.84 E-value=50 Score=30.98 Aligned_cols=148 Identities=10% Similarity=0.141 Sum_probs=85.7
Q ss_pred ChhHHHHHHHHHHHcCCCeEeC--CCCcC----CH--HHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHH
Q 020174 41 DESAMKSAVLESIKLGYRHFDT--ASLYG----TE--RALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALK 112 (330)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~Dt--A~~Yg----se--~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le 112 (330)
+.++..+.+..+.+.|++.|-. +..|. -+ ..+=+++++. -.+++.|...... ..+.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~-------~g~~~~l~vDaN~-~~~~~~a~---- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA-------VGPDVDLMVDANG-RWDLAEAI---- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh-------hCCCCEEEEECCC-CCCHHHHH----
Confidence 3566677778888999998764 33331 01 1112334432 1235566666533 23333332
Q ss_pred HHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHHHhCC
Q 020174 113 KSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFAT 191 (330)
Q Consensus 113 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr-~iGvs~~~~~~l~~~~~~~~ 191 (330)
+-+++|. ..++.++..|... +.++.+.++++.-.|. ..|=+.++.+.+.++++...
T Consensus 207 ~~~~~l~--~~~i~~iEqP~~~---------------------~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~ 263 (357)
T cd03316 207 RLARALE--EYDLFWFEEPVPP---------------------DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGA 263 (357)
T ss_pred HHHHHhC--ccCCCeEcCCCCc---------------------cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCC
Confidence 2233332 2345556665321 2356677788776666 44455677888888887654
Q ss_pred CCceeeccccChh---hhhHHHHHHHHhcCCeEEEec
Q 020174 192 IPPTVNQVEMNPA---WQQRKLVEFCKSKSIIVTAFS 225 (330)
Q Consensus 192 ~~~~~~q~~~~~~---~~~~~~l~~~~~~gi~via~~ 225 (330)
.+++|+..... .+-.++..+|+++|+.++.++
T Consensus 264 --~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 264 --VDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred --CCEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 44666665443 233689999999999988765
No 25
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=80.76 E-value=39 Score=30.88 Aligned_cols=218 Identities=12% Similarity=0.097 Sum_probs=117.1
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCcC------CHH----HHHHHHHHH------HhcCCCCCCCceEEEeecCCC---
Q 020174 40 IDESAMKSAVLESIKLGYRHFDTASLYG------TER----ALGEAIAEA------LKLGLVASREELFITTKLWCS--- 100 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg------se~----~lG~~l~~~------~~~g~~~~R~~v~I~tK~~~~--- 100 (330)
..++.++++-...+++|-+.++|+ .|. +|+ .+.+.++.. .++-+ -.+...|+--+++.
T Consensus 40 ~~peiv~~vh~df~~aGa~ii~T~-TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~--g~~~~~iagsiGP~ga~ 116 (300)
T COG2040 40 DEPEIVRNVHADFLRAGADIITTA-TYQATPEGFAERVSEDEAKQLIRRSVELARAARDAY--GEENQNIAGSLGPYGAA 116 (300)
T ss_pred cCHHHHHHHHHHHHHhcCcEEeeh-hhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh--cccccccceeccchhhh
Confidence 346667777788889999999988 564 122 111111110 00111 13344456666542
Q ss_pred ---------CCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcc
Q 020174 101 ---------DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK 171 (330)
Q Consensus 101 ---------~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr 171 (330)
..+.+.+.+-....++.|.-.-+|++.+-..-..+ ..+.+.+.+++. +|=-
T Consensus 117 ~a~Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~-----------------Ea~Aiv~l~~~~---s~p~ 176 (300)
T COG2040 117 LADEYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNIT-----------------EAEAIVQLVQEF---SKPA 176 (300)
T ss_pred cChhhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChH-----------------HHHHHHHHHHHh---CCce
Confidence 12344455556667777776679999887652211 133444444444 8878
Q ss_pred eEecCCCC------HHHHHHHHHhC-CC-CceeeccccChhhhhHHHHHHH--HhcCCeEEEeccCCcCCCCCCCCCCCC
Q 020174 172 SIGVSNFS------PKKIETILAFA-TI-PPTVNQVEMNPAWQQRKLVEFC--KSKSIIVTAFSPLGAVGSSWGTNQVMN 241 (330)
Q Consensus 172 ~iGvs~~~------~~~l~~~~~~~-~~-~~~~~q~~~~~~~~~~~~l~~~--~~~gi~via~~~l~~~G~l~~~~~~~~ 241 (330)
.|+++-.+ ...+.++.... +. .+...-+|+....+-..+++.. ...|+++++|-. . |--+.+..
T Consensus 177 wISfT~~d~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~~~~a~i~~l~~~~~~~piivYPN--S-Ge~~d~~~--- 250 (300)
T COG2040 177 WISFTLNDDTRLRDGTPLSEAAAILAGLPNIAALGVNCCHPDHIPAAIEELSKLLTGKPIIVYPN--S-GEQYDPAG--- 250 (300)
T ss_pred EEEEEeCCCCccCCCccHHHHHHHHhcCcchhheeeccCChhhhHHHHHHHHhcCCCCceEEcCC--c-ccccCcCC---
Confidence 89988653 22233333221 12 4456667776666657778777 445889999876 2 33322211
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhcCCEEeeCC--CCHHHHHHhhcccc
Q 020174 242 NEALKQIAAAHGKTVAQVCLRWIIEQGATAAVKS--FNKERLKENLEIFD 289 (330)
Q Consensus 242 ~~~l~~la~~~~~s~~qlal~~~l~~~~~~i~g~--~~~~~l~~nl~~~~ 289 (330)
+.+.. -...--+-.++|..|+-. |..+|=|+ +++.|+.+.-++++
T Consensus 251 -k~w~~-p~~~~~~~~~~a~~w~~~-GA~iiGGCCrt~p~~I~ei~~~~~ 297 (300)
T COG2040 251 -KTWHG-PALSADSYSTLAKSWVEA-GARIIGGCCRTGPAHIAEIAKALK 297 (300)
T ss_pred -CcCCC-CCCchhHHHHHHHHHHhc-ccceeeeccCCChHHHHHHHHHHh
Confidence 00000 000001225667888765 43444333 78888888766553
No 26
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=80.52 E-value=57 Score=31.43 Aligned_cols=148 Identities=20% Similarity=0.235 Sum_probs=92.0
Q ss_pred ceeccccCCChhHHHHHHHHHHHcCCC-eEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEee-------------c
Q 020174 32 GLGSAVDNIDESAMKSAVLESIKLGYR-HFDTASLYGTERALGEAIAEALKLGLVASREELFITTK-------------L 97 (330)
Q Consensus 32 glG~~~~~~~~~~~~~~l~~A~~~Gi~-~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK-------------~ 97 (330)
-+||.....+.+.-.+-++.|++.|-. ..|-+. .|.-..+-+.+-+. ..+=|.|= -
T Consensus 66 NIGtS~~~~d~~~E~~K~~~A~~~GADtiMDLSt-ggdl~~iR~~il~~---------s~vpvGTVPiYqa~~~~~~k~~ 135 (431)
T PRK13352 66 NIGTSSDISDIEEELEKAKVAVKYGADTIMDLST-GGDLDEIRRAIIEA---------SPVPVGTVPIYQAAVEAARKYG 135 (431)
T ss_pred eecCCCCCCCHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHc---------CCCCCcChhHHHHHHHHHhcCC
Confidence 344443334555556678999999986 567763 35444444433321 11111111 0
Q ss_pred CCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCC
Q 020174 98 WCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSN 177 (330)
Q Consensus 98 ~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~ 177 (330)
...+.+.+.+...+|+-.+ |=+|.+-+|.- -..+.++.+++.|+ ..|+-+
T Consensus 136 ~~~~mt~d~~~~~ie~qa~----~GVDfmTiHcG------------------------i~~~~~~~~~~~~R--~~giVS 185 (431)
T PRK13352 136 SVVDMTEDDLFDVIEKQAK----DGVDFMTIHCG------------------------VTRETLERLKKSGR--IMGIVS 185 (431)
T ss_pred ChhhCCHHHHHHHHHHHHH----hCCCEEEEccc------------------------hhHHHHHHHHhcCC--ccCeec
Confidence 2235677778777777765 45788999974 24578889998885 567777
Q ss_pred CCHHHHHHHHHhCCCCceeeccccChhhhh-HHHHHHHHhcCCeEEEeccC
Q 020174 178 FSPKKIETILAFATIPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVTAFSPL 227 (330)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~via~~~l 227 (330)
-...-+..++.... .-||+..+ .++++.|+++++.+---..|
T Consensus 186 RGGs~~~~WM~~n~--------~ENPlye~fD~lLeI~~~yDVtlSLGDgl 228 (431)
T PRK13352 186 RGGSFLAAWMLHNN--------KENPLYEHFDYLLEILKEYDVTLSLGDGL 228 (431)
T ss_pred CCHHHHHHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeeeccCCc
Confidence 77777777765432 33455444 68999999999988554433
No 27
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=79.84 E-value=24 Score=31.79 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=67.9
Q ss_pred HHHHHHcCCcceEecC-CCCHHHHHHHHHhCCCCceeeccccChhhhh--HHHHHHHHhcCCeEEEeccCCcCCCCCCCC
Q 020174 161 MEECQRHGLTKSIGVS-NFSPKKIETILAFATIPPTVNQVEMNPAWQQ--RKLVEFCKSKSIIVTAFSPLGAVGSSWGTN 237 (330)
Q Consensus 161 L~~l~~~GkIr~iGvs-~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~l~~~~~~gi~via~~~l~~~G~l~~~~ 237 (330)
|.+-.++|+. -+|+- ......+.+++...+++++++=.+-.++..+ ..++..|+..|+..+..-|-..
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~-------- 80 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE-------- 80 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC--------
Confidence 4444445774 45543 2333455666677778888887777777655 5788899999999888777643
Q ss_pred CCCChHHHHHHHHHhCCCHHHHHHHHHHhcC--CEEeeCCCCHHHHHHhhccccc
Q 020174 238 QVMNNEALKQIAAAHGKTVAQVCLRWIIEQG--ATAAVKSFNKERLKENLEIFDW 290 (330)
Q Consensus 238 ~~~~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~~~~~ 290 (330)
...++.+|..| .+++|-..+.+|+++.+++..+
T Consensus 81 --------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 81 --------------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred --------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 12356666666 5666777788888777766555
No 28
>PRK13796 GTPase YqeH; Provisional
Probab=78.66 E-value=48 Score=31.45 Aligned_cols=121 Identities=16% Similarity=0.149 Sum_probs=76.0
Q ss_pred CChhHHHHHHHHHHHcC---CCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeecCC--CCCChhhHHHHHHHH
Q 020174 40 IDESAMKSAVLESIKLG---YRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWC--SDAHRDLVVPALKKS 114 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~G---i~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~--~~~~~~~i~~~le~s 114 (330)
.+.++..+++...-+.- +-.+|..+.-++- -..|.+.. + .+.-++|.+|.-- .....+.+.+.++..
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~---~~~L~~~~--~---~kpviLViNK~DLl~~~~~~~~i~~~l~~~ 125 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSW---IPGLHRFV--G---NNPVLLVGNKADLLPKSVKKNKVKNWLRQE 125 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCch---hHHHHHHh--C---CCCEEEEEEchhhCCCccCHHHHHHHHHHH
Confidence 45566667776665544 3567877654431 11223221 1 3566889999732 222345566667777
Q ss_pred HhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHH
Q 020174 115 LKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETI 186 (330)
Q Consensus 115 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~ 186 (330)
.+.+|....|++++..-.. ....++++.+.+..+.+.+-.+|.+|.....+-..
T Consensus 126 ~k~~g~~~~~v~~vSAk~g------------------~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~ 179 (365)
T PRK13796 126 AKELGLRPVDVVLISAQKG------------------HGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINR 179 (365)
T ss_pred HHhcCCCcCcEEEEECCCC------------------CCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHH
Confidence 7778865557777765421 12677888888887778899999999997765433
No 29
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=77.40 E-value=20 Score=35.08 Aligned_cols=121 Identities=12% Similarity=0.149 Sum_probs=68.4
Q ss_pred CCCceEEEeecCCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHH
Q 020174 87 SREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQR 166 (330)
Q Consensus 87 ~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 166 (330)
.+.+++|+..+...|..-..+..-+.+.+++-++..=-+ -|- .-+....+.......+.++++
T Consensus 350 ~~~~l~VsINl~a~Dl~s~rli~~~~~~l~~~~v~pqQI-~lE----------------lTER~f~D~~~~~~iI~r~Re 412 (524)
T COG4943 350 QHRDLHVSINLSASDLASPRLIDRLNRKLAQYQVRPQQI-ALE----------------LTERTFADPKKMTPIILRLRE 412 (524)
T ss_pred hCcceEEEEeeeehhhcCchHHHHHHHHHHhcCcChHHh-eee----------------hhhhhhcCchhhhHHHHHHHh
Confidence 456789999988877777778888888888777632111 111 111124556677888999999
Q ss_pred cCC---cceEecCCCCHHHHHHH-HHhCCCCceeeccccChhhh---hHHHHHHHHhcCCeEEEe
Q 020174 167 HGL---TKSIGVSNFSPKKIETI-LAFATIPPTVNQVEMNPAWQ---QRKLVEFCKSKSIIVTAF 224 (330)
Q Consensus 167 ~Gk---Ir~iGvs~~~~~~l~~~-~~~~~~~~~~~q~~~~~~~~---~~~~l~~~~~~gi~via~ 224 (330)
.|. |.-.|..--+..-|..+ ++.-+++-.+++.-=+.... -..+++.|+.+|+.+++=
T Consensus 413 aG~~IyIDDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaE 477 (524)
T COG4943 413 AGHEIYIDDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAE 477 (524)
T ss_pred cCCeEEEccCcCcchhHHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEee
Confidence 997 33333321112223222 11112222233221111100 157899999999999984
No 30
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=77.09 E-value=36 Score=30.89 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=69.1
Q ss_pred HHHHHHcCCcceEec-CCCCHHHHHHHHHhCCCCceeeccccChhhhh--HHHHHHHHhcCCeEEEeccCCcCCCCCCCC
Q 020174 161 MEECQRHGLTKSIGV-SNFSPKKIETILAFATIPPTVNQVEMNPAWQQ--RKLVEFCKSKSIIVTAFSPLGAVGSSWGTN 237 (330)
Q Consensus 161 L~~l~~~GkIr~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~l~~~~~~gi~via~~~l~~~G~l~~~~ 237 (330)
|.+..++|+.- +|+ .......+.+++...+++++++=.+-+++..+ ..++..++..|+..+..-|-..
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~-------- 79 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS-------- 79 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC--------
Confidence 44444567754 443 33333455666677778888887787777665 4688888999998888776532
Q ss_pred CCCChHHHHHHHHHhCCCHHHHHHHHHHhcC--CEEeeCCCCHHHHHHhhccccc
Q 020174 238 QVMNNEALKQIAAAHGKTVAQVCLRWIIEQG--ATAAVKSFNKERLKENLEIFDW 290 (330)
Q Consensus 238 ~~~~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~~~~~ 290 (330)
...++.+|..| .+++|-..+.++.++.+++..+
T Consensus 80 --------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 --------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred --------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 12457778877 5777788888888888877766
No 31
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=75.52 E-value=29 Score=32.31 Aligned_cols=97 Identities=20% Similarity=0.178 Sum_probs=58.8
Q ss_pred HHHhhcCCCccceEEeec-CCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcce-EecCCC---CHHHHHHHH
Q 020174 113 KSLKTLQIEYVDLYLIHW-PMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKS-IGVSNF---SPKKIETIL 187 (330)
Q Consensus 113 ~sL~~Lg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~-iGvs~~---~~~~l~~~~ 187 (330)
+.-+.+|.|+||+-+.-. |+..+ ...++....++...+.=.+-- |..|.. +++.++..+
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d----------------~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaal 146 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKD----------------KSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVA 146 (319)
T ss_pred HHHHHhCCCEEEEECCCCCccccc----------------chHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHH
Confidence 444688998888875433 21100 113334444444444333333 665533 688899888
Q ss_pred HhCC-CCceeeccccChhhhhHHHHHHHHhcCCeEEEeccCC
Q 020174 188 AFAT-IPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLG 228 (330)
Q Consensus 188 ~~~~-~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~ 228 (330)
+... -++.++-.... .=+.+.++|+++|..|++.++..
T Consensus 147 e~~~g~~pLInSat~e---n~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 147 EAAEGERCLLGSAEED---NYKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred HHhCCCCCEEEECCHH---HHHHHHHHHHHhCCeEEEEcHHH
Confidence 8765 34655544422 12679999999999999988664
No 32
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=74.63 E-value=82 Score=30.13 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=60.0
Q ss_pred hhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcc-eEecC---CCCHHHHHHHHHhCC
Q 020174 116 KTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK-SIGVS---NFSPKKIETILAFAT 191 (330)
Q Consensus 116 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr-~iGvs---~~~~~~l~~~~~~~~ 191 (330)
+.+| +|++.||.-..+..+. ..+.++..+..++..+.=.+- -|+=| ..+++.++..++...
T Consensus 150 ~~~~---aD~Ialr~~S~DP~~~------------d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~ 214 (389)
T TIGR00381 150 KEFG---ADMVTIHLISTDPKLD------------DKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAE 214 (389)
T ss_pred HHhC---CCEEEEEecCCCcccc------------ccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhC
Confidence 5565 6888888754321111 123455666666664433322 33333 557888999888765
Q ss_pred C-CceeeccccChhhhhHHHHHHHHhcCCeEEEeccCCc
Q 020174 192 I-PPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGA 229 (330)
Q Consensus 192 ~-~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~~ 229 (330)
- ++.++-.+... .=+.+.+.|+++|..++++++..-
T Consensus 215 G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Di 251 (389)
T TIGR00381 215 GERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDI 251 (389)
T ss_pred CCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcH
Confidence 3 56665444431 125799999999999999998864
No 33
>PRK08609 hypothetical protein; Provisional
Probab=74.24 E-value=1e+02 Score=31.19 Aligned_cols=183 Identities=16% Similarity=0.145 Sum_probs=96.0
Q ss_pred HHHHHHHHHHcCCCeEeCCCCc-------C-CHHHHHHHHHHH--HhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHH
Q 020174 45 MKSAVLESIKLGYRHFDTASLY-------G-TERALGEAIAEA--LKLGLVASREELFITTKLWCSDAHRDLVVPALKKS 114 (330)
Q Consensus 45 ~~~~l~~A~~~Gi~~~DtA~~Y-------g-se~~lG~~l~~~--~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~s 114 (330)
..++++.|.+.|+++|=.++++ | +...+-..+++. ++... ..=+|++..=+... ++....-.+..
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~--~~i~Il~GiEv~i~---~~g~~d~~~~~ 425 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKY--PEIDILSGIEMDIL---PDGSLDYDDEV 425 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhc--CCCeEEEEEEEeec---CCcchhhcHHH
Confidence 5679999999999988777774 2 222222222111 11110 11123333333221 12222223334
Q ss_pred HhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCC------CC--HHHHHHH
Q 020174 115 LKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSN------FS--PKKIETI 186 (330)
Q Consensus 115 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~------~~--~~~l~~~ 186 (330)
|+. .||+ +.-+|++... ...++++.+.++.+.|.+.-||=-. .. ...++++
T Consensus 426 L~~--~D~v-I~SvH~~~~~------------------~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i 484 (570)
T PRK08609 426 LAE--LDYV-IAAIHSSFSQ------------------SEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQL 484 (570)
T ss_pred HHh--hCEE-EEEeecCCCC------------------CHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHH
Confidence 554 4665 6777875321 1456778888988889887776332 11 2333444
Q ss_pred HHhCCCCceeeccccChhh--hhHHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCChHHHHHHHHHhCCCHHHH
Q 020174 187 LAFATIPPTVNQVEMNPAW--QQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGKTVAQV 259 (330)
Q Consensus 187 ~~~~~~~~~~~q~~~~~~~--~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~ql 259 (330)
++.+.-.-.++|+|-++.. ....++..|.+.|+.++.-|--.. +..+-.-+.-..+|++-+.++.++
T Consensus 485 ~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSDAH~------~~~l~~~~~~v~~ar~~~~~~~~v 553 (570)
T PRK08609 485 IELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAINTDAHH------TEMLDDMKYGVATARKGWIQKDRV 553 (570)
T ss_pred HHHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEEECCCCC------hhhhCcHHHHHHHHHHcCCCHHHc
Confidence 4332212236666665542 236789999999997655443332 223333455566677766655543
No 34
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=72.73 E-value=42 Score=30.05 Aligned_cols=96 Identities=14% Similarity=0.053 Sum_probs=63.3
Q ss_pred HcCCcceEec-CCCCHHHHHHHHHhCCCCceeeccccChhhhh--HHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCCh
Q 020174 166 RHGLTKSIGV-SNFSPKKIETILAFATIPPTVNQVEMNPAWQQ--RKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNN 242 (330)
Q Consensus 166 ~~GkIr~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~~ 242 (330)
++|+. .+|+ ++.....+.+++...+++++++=.+-.++..+ ..++..|+..|+..+..-|-..
T Consensus 8 ~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~------------- 73 (249)
T TIGR03239 8 LARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE------------- 73 (249)
T ss_pred HcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC-------------
Confidence 34664 3554 23333455666677778888887787777655 5788888999998888776643
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcC--CEEeeCCCCHHHHHHhhccccc
Q 020174 243 EALKQIAAAHGKTVAQVCLRWIIEQG--ATAAVKSFNKERLKENLEIFDW 290 (330)
Q Consensus 243 ~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~~~~~ 290 (330)
...++.+|..| .+++|-..+.+++++.+++..+
T Consensus 74 ---------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 ---------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred ---------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 12345566666 4666777777777777766554
No 35
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=72.08 E-value=20 Score=34.37 Aligned_cols=79 Identities=16% Similarity=0.080 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHcCCCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhc--CC
Q 020174 43 SAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTL--QI 120 (330)
Q Consensus 43 ~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~L--g~ 120 (330)
.....+++.|++.|++++|||...-....+.+..+ +..+.+..-++ ++|.-..--.....+.+ .+
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~----------~Agit~v~~~G---~dPGi~nv~a~~a~~~~~~~i 145 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAK----------KAGITAVLGCG---FDPGITNVLAAYAAKELFDEI 145 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHH----------HcCeEEEcccC---cCcchHHHHHHHHHHHhhccc
Confidence 33468889999999999999977555333333333 23344444443 22222222222223333 57
Q ss_pred CccceEEeecCCCC
Q 020174 121 EYVDLYLIHWPMSA 134 (330)
Q Consensus 121 d~iDl~~lH~p~~~ 134 (330)
+++|+|..+.|+..
T Consensus 146 ~si~iy~g~~g~~~ 159 (389)
T COG1748 146 ESIDIYVGGLGEHG 159 (389)
T ss_pred cEEEEEEecCCCCC
Confidence 89999999998765
No 36
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=69.41 E-value=16 Score=35.81 Aligned_cols=128 Identities=19% Similarity=0.147 Sum_probs=84.6
Q ss_pred HHHHHHcCCCeE--eCCCC--c--------CCHHHHHHHHHHHHhcCCCCCCCceEEEeecCCC-CCChhhH--------
Q 020174 49 VLESIKLGYRHF--DTASL--Y--------GTERALGEAIAEALKLGLVASREELFITTKLWCS-DAHRDLV-------- 107 (330)
Q Consensus 49 l~~A~~~Gi~~~--DtA~~--Y--------gse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~-~~~~~~i-------- 107 (330)
..+.-+.|+..+ =||-. | |.-+.+..+-++.+... -+.++||++-++.- ...|...
T Consensus 109 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~---L~G~~~lTaGLGGMgGAQPlA~~mag~v~i 185 (545)
T TIGR01228 109 FHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGS---LKGKWVLTAGLGGMGGAQPLAVTMNGGVSI 185 (545)
T ss_pred HHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCC---CceeEEEEeCCCccccccHHHHHHcCceEE
Confidence 455567787744 13333 3 24566667777776432 47889998887532 1111111
Q ss_pred --HHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHH
Q 020174 108 --VPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIET 185 (330)
Q Consensus 108 --~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~ 185 (330)
.-.-.+.-+|+.+.|+|.+ ..+++++++..++.+++|+...||+-..-.+.+++
T Consensus 186 ~vEvd~~ri~kR~~~gyld~~------------------------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~ 241 (545)
T TIGR01228 186 AVEVDESRIDKRLETKYCDEQ------------------------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPE 241 (545)
T ss_pred EEEECHHHHHHHHhcCcceeE------------------------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHH
Confidence 1123445578889999987 12378999999999999999999999877888888
Q ss_pred HHHhC-CCCceeeccccCh
Q 020174 186 ILAFA-TIPPTVNQVEMNP 203 (330)
Q Consensus 186 ~~~~~-~~~~~~~q~~~~~ 203 (330)
+++.. .++++..|+..+.
T Consensus 242 l~~r~i~pDlvtDQTSaHd 260 (545)
T TIGR01228 242 LLKRGVVPDVVTDQTSAHD 260 (545)
T ss_pred HHHcCCCCCCcCCCCcccC
Confidence 88764 2455567877643
No 37
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=69.38 E-value=94 Score=28.61 Aligned_cols=150 Identities=15% Similarity=0.090 Sum_probs=89.0
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCcCCHH--HHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhc
Q 020174 41 DESAMKSAVLESIKLGYRHFDTASLYGTER--ALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTL 118 (330)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~--~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~L 118 (330)
+.++..+.+..+.+.|++.|+.--.-..+. ..=+++++. . . ++-|.-+.... .+.+.. ..+-+.|+.+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~----~--g--~~~l~vD~n~~-~~~~~A-~~~~~~l~~~ 203 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA----A--P--DARLRVDANQG-WTPEEA-VELLRELAEL 203 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh----C--C--CCeEEEeCCCC-cCHHHH-HHHHHHHHhc
Confidence 456667778888999999998642111122 112333332 1 2 45677776432 333332 2233455555
Q ss_pred CCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHHHhCCCCceee
Q 020174 119 QIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVN 197 (330)
Q Consensus 119 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr-~iGvs~~~~~~l~~~~~~~~~~~~~~ 197 (330)
++ .++-.|... .-++.+.+|++...|. +.|=+-++.+.+.++++... .+++
T Consensus 204 ~l-----~~iEeP~~~---------------------~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~--~d~v 255 (316)
T cd03319 204 GV-----ELIEQPVPA---------------------GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGA--YDGI 255 (316)
T ss_pred CC-----CEEECCCCC---------------------CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCC--CCEE
Confidence 44 344444211 1245677888887777 44555677888888887654 4466
Q ss_pred ccccChh---hhhHHHHHHHHhcCCeEEEeccCC
Q 020174 198 QVEMNPA---WQQRKLVEFCKSKSIIVTAFSPLG 228 (330)
Q Consensus 198 q~~~~~~---~~~~~~l~~~~~~gi~via~~~l~ 228 (330)
|...... ..-.++..+|+++|+.++.++.+.
T Consensus 256 ~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~ 289 (316)
T cd03319 256 NIKLMKTGGLTEALRIADLARAAGLKVMVGCMVE 289 (316)
T ss_pred EEeccccCCHHHHHHHHHHHHHcCCCEEEECchh
Confidence 6665443 222678999999999999976654
No 38
>PRK05414 urocanate hydratase; Provisional
Probab=69.08 E-value=17 Score=35.86 Aligned_cols=128 Identities=20% Similarity=0.158 Sum_probs=84.7
Q ss_pred HHHHHHcCCCeE--eCCCC--c--------CCHHHHHHHHHHHHhcCCCCCCCceEEEeecCCC-CCChhhH--------
Q 020174 49 VLESIKLGYRHF--DTASL--Y--------GTERALGEAIAEALKLGLVASREELFITTKLWCS-DAHRDLV-------- 107 (330)
Q Consensus 49 l~~A~~~Gi~~~--DtA~~--Y--------gse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~-~~~~~~i-------- 107 (330)
+.+.-+.|+..+ =||-. | |.-+.+..+-++.+. |. -+.++||++-++.- ...|...
T Consensus 118 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g~--L~G~~~lTaGLGGMgGAQPlA~~mag~v~i 194 (556)
T PRK05414 118 FNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-GD--LAGRLVLTAGLGGMGGAQPLAATMAGAVCL 194 (556)
T ss_pred HHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-CC--CceeEEEEecCCccccccHHHHHhcCceEE
Confidence 455567787644 13333 3 245666677777764 32 47889999887532 1111111
Q ss_pred --HHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHH
Q 020174 108 --VPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIET 185 (330)
Q Consensus 108 --~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~ 185 (330)
.-.-.+.-+|+.+.|+|.+ ..+++++++..++.+++|+...||+-..-.+.+++
T Consensus 195 ~vEvd~~ri~kR~~~gyld~~------------------------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~ 250 (556)
T PRK05414 195 AVEVDESRIDKRLRTGYLDEK------------------------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPE 250 (556)
T ss_pred EEEECHHHHHHHHhCCcceeE------------------------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHH
Confidence 1123455688899999987 12378999999999999999999999877888888
Q ss_pred HHHhCC-CCceeeccccCh
Q 020174 186 ILAFAT-IPPTVNQVEMNP 203 (330)
Q Consensus 186 ~~~~~~-~~~~~~q~~~~~ 203 (330)
+++..- ++.+..|+..+.
T Consensus 251 l~~~~i~pDlvtDQTSaHd 269 (556)
T PRK05414 251 LVRRGIRPDLVTDQTSAHD 269 (556)
T ss_pred HHHcCCCCCccCcCccccC
Confidence 877642 455567877643
No 39
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=68.71 E-value=88 Score=28.33 Aligned_cols=138 Identities=18% Similarity=0.134 Sum_probs=75.7
Q ss_pred ccHHHHHHHHHHHHHcCCcceEecCCC-C---HHHHHHHH---HhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEe
Q 020174 152 LDYNGVWEAMEECQRHGLTKSIGVSNF-S---PKKIETIL---AFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAF 224 (330)
Q Consensus 152 ~~~~~~~~~L~~l~~~GkIr~iGvs~~-~---~~~l~~~~---~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~ 224 (330)
...+.+++.+++.++++.---|++-.+ + ...+++++ +..+++ -+-++--|.....++.+.|+++||..|-.
T Consensus 76 ~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~Gvd--GlivpDLP~ee~~~~~~~~~~~gi~~I~l 153 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVD--GLLVPDLPPEESDELLKAAEKHGIDPIFL 153 (265)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCC--EEEeCCCChHHHHHHHHHHHHcCCcEEEE
Confidence 446788888888887754333443332 2 12234432 333333 22234344444567999999999988876
Q ss_pred ccCCcCCCCCCCCCCCChHHHHHHHHHh----------CCC--------HHHHHHHHHHhc---CCEEeeCCCCHHHHHH
Q 020174 225 SPLGAVGSSWGTNQVMNNEALKQIAAAH----------GKT--------VAQVCLRWIIEQ---GATAAVKSFNKERLKE 283 (330)
Q Consensus 225 ~~l~~~G~l~~~~~~~~~~~l~~la~~~----------~~s--------~~qlal~~~l~~---~~~~i~g~~~~~~l~~ 283 (330)
-+-.. ..+++..+++.- |+| ...-.++.+.++ |.++=.|-++++|+++
T Consensus 154 vaPtt-----------~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~ 222 (265)
T COG0159 154 VAPTT-----------PDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQ 222 (265)
T ss_pred eCCCC-----------CHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHH
Confidence 55532 233444444431 211 123345555543 3566678889999988
Q ss_pred hhccccc-ccCHHHHHHHhc
Q 020174 284 NLEIFDW-ALTDDDHDKIRQ 302 (330)
Q Consensus 284 nl~~~~~-~L~~~~~~~l~~ 302 (330)
..++.+- -.-.+-++.|++
T Consensus 223 v~~~ADGVIVGSAiV~~i~~ 242 (265)
T COG0159 223 VAEAADGVIVGSAIVKIIEE 242 (265)
T ss_pred HHHhCCeEEEcHHHHHHHHh
Confidence 8776543 344444555543
No 40
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=66.77 E-value=45 Score=29.87 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCC--ceEEEeecCCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCc
Q 020174 69 ERALGEAIAEALKLGLVASRE--ELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPE 146 (330)
Q Consensus 69 e~~lG~~l~~~~~~g~~~~R~--~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 146 (330)
...+.++++.... .+. .+.++..+.+.......+...+.+.+++.+++.- -+.+---.. ..
T Consensus 69 ~~v~~~a~~~~~~-----~~~~~~~~l~iNis~~~l~~~~~~~~l~~~l~~~~~~~~-~l~lEitE~-~~---------- 131 (256)
T COG2200 69 RWVLEEACRQLRT-----WPRAGPLRLAVNLSPVQLRSPGLVDLLLRLLARLGLPPH-RLVLEITES-AL---------- 131 (256)
T ss_pred HHHHHHHHHHHHh-----hhhcCCceEEEEcCHHHhCCchHHHHHHHHHHHhCCCcc-eEEEEEeCc-hh----------
Confidence 3455666665421 122 3778888765444446777788888888886543 222221111 00
Q ss_pred cccccccHHHHHHHHHHHHHcCCcceEecCCCC--HHHHHHHHHhCCCCceeeccccChhhh--------h--HHHHHHH
Q 020174 147 EDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFS--PKKIETILAFATIPPTVNQVEMNPAWQ--------Q--RKLVEFC 214 (330)
Q Consensus 147 ~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~--------~--~~~l~~~ 214 (330)
....+.+...+.+|++.| + .|.+..|. ...+..+.+ ++++++-+.-+.... . +.++..|
T Consensus 132 ----~~~~~~~~~~l~~L~~~G-~-~ialDDFGtG~ssl~~L~~---l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la 202 (256)
T COG2200 132 ----IDDLDTALALLRQLRELG-V-RIALDDFGTGYSSLSYLKR---LPPDILKIDRSFVRDLETDARDQAIVRAIVALA 202 (256)
T ss_pred ----hcCHHHHHHHHHHHHHCC-C-eEEEECCCCCHHHHHHHhh---CCCCeEEECHHHHhhcccCcchHHHHHHHHHHH
Confidence 012346778999999999 3 36666665 334444433 344444444333221 1 5689999
Q ss_pred HhcCCeEEEe
Q 020174 215 KSKSIIVTAF 224 (330)
Q Consensus 215 ~~~gi~via~ 224 (330)
++.|+.+++-
T Consensus 203 ~~l~~~vvaE 212 (256)
T COG2200 203 HKLGLTVVAE 212 (256)
T ss_pred HHCCCEEEEe
Confidence 9999999993
No 41
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=65.16 E-value=91 Score=28.04 Aligned_cols=105 Identities=13% Similarity=0.092 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHhhcCCCccceEEe-ecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHH
Q 020174 104 RDLVVPALKKSLKTLQIEYVDLYLI-HWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKK 182 (330)
Q Consensus 104 ~~~i~~~le~sL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~ 182 (330)
.+.+.+..++.+ +-|.|+||+=.- .+|....-.+ ....+.+...++.+++.-.+. +.+-+++++.
T Consensus 23 ~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~------------~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v 88 (257)
T cd00739 23 LDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSV------------EEELERVIPVLEALRGELDVL-ISVDTFRAEV 88 (257)
T ss_pred HHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCH------------HHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHH
Confidence 344444443333 458899998632 3343211100 011333444566777664444 8888999999
Q ss_pred HHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEecc
Q 020174 183 IETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSP 226 (330)
Q Consensus 183 l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~ 226 (330)
++.+++.+ ...++- .+....+.++++.++++|..++.+..
T Consensus 89 ~e~al~~G--~~iINd--isg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 89 ARAALEAG--ADIIND--VSGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHHhC--CCEEEe--CCCCCCChHHHHHHHHcCCCEEEECC
Confidence 99999875 233442 33332236789999999999999654
No 42
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=64.55 E-value=55 Score=29.02 Aligned_cols=102 Identities=13% Similarity=0.139 Sum_probs=61.8
Q ss_pred ChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcC-CcceEecCCCCHH
Q 020174 103 HRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHG-LTKSIGVSNFSPK 181 (330)
Q Consensus 103 ~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-kIr~iGvs~~~~~ 181 (330)
+.+... .+-+.|..+|+++|.+-..-.+... +. ....++.++++++.+ .++...++.....
T Consensus 17 s~e~~~-~i~~~L~~~GV~~IEvg~~~~~~~~-p~----------------~~~~~~~i~~l~~~~~~~~~~~l~~~~~~ 78 (265)
T cd03174 17 STEDKL-EIAEALDEAGVDSIEVGSGASPKAV-PQ----------------MEDDWEVLRAIRKLVPNVKLQALVRNREK 78 (265)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEeccCcCcccc-cc----------------CCCHHHHHHHHHhccCCcEEEEEccCchh
Confidence 334433 4445578899988888765543211 10 134577888888888 6777677765566
Q ss_pred HHHHHHHhCCCCceeeccccChh----------------hhhHHHHHHHHhcCCeEEEec
Q 020174 182 KIETILAFATIPPTVNQVEMNPA----------------WQQRKLVEFCKSKSIIVTAFS 225 (330)
Q Consensus 182 ~l~~~~~~~~~~~~~~q~~~~~~----------------~~~~~~l~~~~~~gi~via~~ 225 (330)
.++.+.+.. + ..+++.+... ..-.+.++.++++|+.+...-
T Consensus 79 ~i~~a~~~g-~--~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 79 GIERALEAG-V--DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred hHHHHHhCC-c--CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 677776653 2 2333333322 111467888999999876654
No 43
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=64.49 E-value=1e+02 Score=30.58 Aligned_cols=127 Identities=9% Similarity=0.089 Sum_probs=74.9
Q ss_pred cccccHHHHHHHHHHHHHcCCcceEecCC----CCHHHHHHHHH----hCCCCce-eeccccChhhhhHHHHHHHHhcCC
Q 020174 149 LVSLDYNGVWEAMEECQRHGLTKSIGVSN----FSPKKIETILA----FATIPPT-VNQVEMNPAWQQRKLVEFCKSKSI 219 (330)
Q Consensus 149 ~~~~~~~~~~~~L~~l~~~GkIr~iGvs~----~~~~~l~~~~~----~~~~~~~-~~q~~~~~~~~~~~~l~~~~~~gi 219 (330)
++..+.+.+++.++.++++..++.+-+.. .+...+.++++ ....++. ..+...+....+.++++..++.|+
T Consensus 219 ~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~ 298 (497)
T TIGR02026 219 YRHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGL 298 (497)
T ss_pred eecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCC
Confidence 34567889999999998876688776652 23444444433 2212221 234444444445789999999998
Q ss_pred eEEEeccCCcCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcC----CEEeeCC--CCHHHHHHhhc
Q 020174 220 IVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGKTVAQVCLRWIIEQG----ATAAVKS--FNKERLKENLE 286 (330)
Q Consensus 220 ~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~----~~~i~g~--~~~~~l~~nl~ 286 (330)
..+..+.=. ..++.++.+.+.+...-..-+++.+.+.| ...++|. .+.+.+++.++
T Consensus 299 ~~v~iGiES-----------~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~ 360 (497)
T TIGR02026 299 VHISLGTEA-----------AAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYR 360 (497)
T ss_pred cEEEEcccc-----------CCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHH
Confidence 766543322 23445655544443333444667777777 3446664 56777777665
No 44
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=63.75 E-value=95 Score=27.79 Aligned_cols=107 Identities=12% Similarity=0.120 Sum_probs=66.4
Q ss_pred ChhhHHHHHHHHHhhcCCCccceEE-eecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHH
Q 020174 103 HRDLVVPALKKSLKTLQIEYVDLYL-IHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPK 181 (330)
Q Consensus 103 ~~~~i~~~le~sL~~Lg~d~iDl~~-lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~ 181 (330)
+.+.+.+..++.+ .-|.|+||+=. .-+|... + .+. ....+.+...++.+++.-.+- |.+-+++++
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~-~-------~~~----~~E~~rl~~~v~~l~~~~~~p-iSIDT~~~~ 87 (258)
T cd00423 22 SLDKALEHARRMV-EEGADIIDIGGESTRPGAE-P-------VSV----EEELERVIPVLRALAGEPDVP-ISVDTFNAE 87 (258)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCC-c-------CCH----HHHHHHHHHHHHHHHhcCCCe-EEEeCCcHH
Confidence 4555555555443 66889999863 2334321 1 000 011344666777777663443 899999999
Q ss_pred HHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEeccC
Q 020174 182 KIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPL 227 (330)
Q Consensus 182 ~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l 227 (330)
.++.+++.+ .+.++-+ +....+.++++.++++|..++.+..-
T Consensus 88 v~~aaL~~g--~~iINdi--s~~~~~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 88 VAEAALKAG--ADIINDV--SGGRGDPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred HHHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECcC
Confidence 999999876 3344422 33222267899999999999987644
No 45
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=63.00 E-value=4.5 Score=38.11 Aligned_cols=53 Identities=11% Similarity=0.232 Sum_probs=32.1
Q ss_pred cCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhh--hhHHHHHHHHhcCCe
Q 020174 167 HGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAW--QQRKLVEFCKSKSII 220 (330)
Q Consensus 167 ~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~--~~~~~l~~~~~~gi~ 220 (330)
-|+||++||--++++.+.++..... .-+..+.+...+. .+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~-e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTEN-EKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCcc-HHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 5999999999999999887754432 1122222222221 124566667777664
No 46
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=62.65 E-value=33 Score=24.99 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=41.0
Q ss_pred HHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEec
Q 020174 161 MEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFS 225 (330)
Q Consensus 161 L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~ 225 (330)
++++++.|++. +|. .+..+.++......+++--+.+. .-...+..+|+.++|+++-+.
T Consensus 3 ~~~~~ragkl~-~G~-----~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV-IGT-----KQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE-EcH-----HHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 45677778754 444 56667777777666666666665 244778899999999998765
No 47
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=61.24 E-value=93 Score=28.43 Aligned_cols=115 Identities=16% Similarity=0.221 Sum_probs=72.6
Q ss_pred HHHHHHHcCCcceEecCCCCHHHHHHHHHhCC--C----CceeeccccChhhhhHHHHHHHHhcCCeEEEeccCCcCCCC
Q 020174 160 AMEECQRHGLTKSIGVSNFSPKKIETILAFAT--I----PPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSS 233 (330)
Q Consensus 160 ~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~--~----~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~~~G~l 233 (330)
.++.|....++-.+.=++.+.+..+.+.+... + -+..+-+-+--..+|+.+.+++++-++-++.-+.-
T Consensus 146 d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~n------ 219 (280)
T TIGR00216 146 DLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKN------ 219 (280)
T ss_pred HHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCC------
Confidence 34455445555555555666666555544321 1 11223333333455678899999988777662222
Q ss_pred CCCCCCCChHHHHHHHHHhCC------CHHHHHHHHHHhcC-CEEeeCCCCHHHHHHhh
Q 020174 234 WGTNQVMNNEALKQIAAAHGK------TVAQVCLRWIIEQG-ATAAVKSFNKERLKENL 285 (330)
Q Consensus 234 ~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~~nl 285 (330)
.-.-..|.++|++++. ++.++-..|..... +-+..|+|+|+.+-+.+
T Consensus 220 -----SsNT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 220 -----SSNTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred -----CchHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 1234689999999873 78999999988766 67779999999876643
No 48
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=60.23 E-value=22 Score=35.04 Aligned_cols=129 Identities=17% Similarity=0.114 Sum_probs=74.6
Q ss_pred HHHHHHHcCCCeEe--CCCCc---C-------CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCC-ChhhH-------
Q 020174 48 AVLESIKLGYRHFD--TASLY---G-------TERALGEAIAEALKLGLVASREELFITTKLWCSDA-HRDLV------- 107 (330)
Q Consensus 48 ~l~~A~~~Gi~~~D--tA~~Y---g-------se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~-~~~~i------- 107 (330)
...+..+.|+..+= ||-.| | .-+.+..+-++.+... -+.++||++-++.-.. .|...
T Consensus 107 ~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~---L~Gk~~lTaGLGGMgGAQplA~~m~g~v~ 183 (546)
T PF01175_consen 107 HFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGD---LAGKLFLTAGLGGMGGAQPLAATMAGGVG 183 (546)
T ss_dssp HHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS----TT-EEEEE--STTCCHHHHHHHHTT-EE
T ss_pred HHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCC---CcceEEEEecccccccchHHHHHhcCceE
Confidence 35566788888552 44333 2 3455666667776633 5788999998864210 01100
Q ss_pred ---HHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHH
Q 020174 108 ---VPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIE 184 (330)
Q Consensus 108 ---~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~ 184 (330)
.-.-++.-+|+.+.|+|.+. .+++++++..++.+++|+...||+-..-.+.++
T Consensus 184 l~vEvd~~ri~kR~~~g~ld~~~------------------------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~ 239 (546)
T PF01175_consen 184 LIVEVDPSRIEKRLEQGYLDEVT------------------------DDLDEALARAKEARAKKEPLSIGLLGNAADLWE 239 (546)
T ss_dssp EEEES-HHHHHHHHHTTSSSEEE------------------------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHH
T ss_pred EEEEECHHHHHHHHhCCCeeEEc------------------------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHH
Confidence 11234555788889999872 237899999999999999999999987778888
Q ss_pred HHHHhCC-CCceeeccccCh
Q 020174 185 TILAFAT-IPPTVNQVEMNP 203 (330)
Q Consensus 185 ~~~~~~~-~~~~~~q~~~~~ 203 (330)
++++..- +++...|+..+.
T Consensus 240 ~l~~~~i~pDl~tDQTS~Hd 259 (546)
T PF01175_consen 240 ELVERGIIPDLVTDQTSAHD 259 (546)
T ss_dssp HHHHTT---SEE---SSTT-
T ss_pred HHHHcCCCCCcccCCCcccc
Confidence 8877643 455567887643
No 49
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=59.07 E-value=1.9e+02 Score=28.44 Aligned_cols=118 Identities=13% Similarity=0.097 Sum_probs=60.8
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCCCC-CCceEEEeecCCCCCChhhHHHHHHHHHhhcCCC----ccceEEeecCCCCCC
Q 020174 62 TASLYGTERALGEAIAEALKLGLVAS-REELFITTKLWCSDAHRDLVVPALKKSLKTLQIE----YVDLYLIHWPMSAKP 136 (330)
Q Consensus 62 tA~~Ygse~~lG~~l~~~~~~g~~~~-R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d----~iDl~~lH~p~~~~~ 136 (330)
..-.||.|+-+-++|++..+.- + .+=++|.|-..+. .--+.+..-+++.-++++-+ .+.++.+|.|.....
T Consensus 64 ~d~VfGG~~~L~~~I~~~~~~~---~~p~~I~V~tTC~~e-iIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs 139 (454)
T cd01973 64 DSAVFGGAKRVEEGVLVLARRY---PDLRVIPIITTCSTE-IIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGS 139 (454)
T ss_pred CceEECcHHHHHHHHHHHHHhc---CCCCEEEEECCchHh-hhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCC
Confidence 3346888888888998865432 2 2346777665321 11133333333332222111 368899999876432
Q ss_pred CccccCCCCccccccccHHHHHHHHHH-HHH----cCCcceEecCC--CCHHHHHHHHHhCCCCcee
Q 020174 137 SEKLRNDIPEEDLVSLDYNGVWEAMEE-CQR----HGLTKSIGVSN--FSPKKIETILAFATIPPTV 196 (330)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~L~~-l~~----~GkIr~iGvs~--~~~~~l~~~~~~~~~~~~~ 196 (330)
.. .-...+++++-+ +.. +++|.-||-.+ .+.+.+.++++..++.+.+
T Consensus 140 ~~-------------~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~ 193 (454)
T cd01973 140 MV-------------TGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANI 193 (454)
T ss_pred HH-------------HHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 10 012223333322 221 46688887433 2346677777776665543
No 50
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=58.23 E-value=1.8e+02 Score=27.97 Aligned_cols=144 Identities=18% Similarity=0.229 Sum_probs=71.1
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCcC-------CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHH
Q 020174 41 DESAMKSAVLESIKLGYRHFDTASLYG-------TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKK 113 (330)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-------se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~ 113 (330)
...++.+.+..|+.+|- ...|+ +-+.|.+.+...+...+ ..++|||++-. .+++|-
T Consensus 79 ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl--~a~DV~ltsGC----------~qAIe~ 141 (447)
T KOG0259|consen 79 TSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKL--TADDVVLTSGC----------SQAIEL 141 (447)
T ss_pred CCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCcc--CcCceEEeccc----------hHHHHH
Confidence 45667888889998883 34776 23344444332222222 57888888643 234555
Q ss_pred HHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcC-CcceEecCC---C--CHHHHHHHH
Q 020174 114 SLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHG-LTKSIGVSN---F--SPKKIETIL 187 (330)
Q Consensus 114 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-kIr~iGvs~---~--~~~~l~~~~ 187 (330)
.+.-|-.-.-. +++-+|... ..++... -.| -+|++-+-. | +.++++.+.
T Consensus 142 ~i~~LA~p~aN-ILlPrPGfp-------------------~Y~~~a~-----~~~lEVR~ydlLPe~~weIDL~~veal~ 196 (447)
T KOG0259|consen 142 AISSLANPGAN-ILLPRPGFP-------------------LYDTRAI-----YSGLEVRYYDLLPEKDWEIDLDGVEALA 196 (447)
T ss_pred HHHHhcCCCCc-eecCCCCCc-------------------hHHHhhh-----hcCceeEeecccCcccceechHHHHHhh
Confidence 55555432223 345555321 1122111 112 244444431 2 244455554
Q ss_pred HhCCCCceeeccccChhhh----h--HHHHHHHHhcCCeEEEeccC
Q 020174 188 AFATIPPTVNQVEMNPAWQ----Q--RKLVEFCKSKSIIVTAFSPL 227 (330)
Q Consensus 188 ~~~~~~~~~~q~~~~~~~~----~--~~~l~~~~~~gi~via~~~l 227 (330)
+.-.+- .++-.+-||... + +++++.|+++||-||+-..+
T Consensus 197 DENT~A-ivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY 241 (447)
T KOG0259|consen 197 DENTVA-IVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVY 241 (447)
T ss_pred ccCeeE-EEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhc
Confidence 443221 122233444321 1 67888888888888875544
No 51
>PRK06361 hypothetical protein; Provisional
Probab=57.51 E-value=1.2e+02 Score=25.92 Aligned_cols=184 Identities=14% Similarity=0.112 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCcC--C-HHHHH---HHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhh
Q 020174 44 AMKSAVLESIKLGYRHFDTASLYG--T-ERALG---EAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKT 117 (330)
Q Consensus 44 ~~~~~l~~A~~~Gi~~~DtA~~Yg--s-e~~lG---~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~ 117 (330)
...++++.|.+.|+..|=.+++.. + ...+- +.+++. +.. ..=+++...-+.. ..++.+ ..+.+.+++
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~-~~~---~~i~v~~GiE~~~--~~~~~~-~~~~~~~~~ 83 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEEL-ELY---WDIEVIPGVELTH--VPPKLI-PKLAKKARD 83 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHH-hhc---CCCEEEEEEEEcc--cCchhh-chHHHHHHH
Confidence 367899999999999886666643 1 11111 111211 000 1112333333321 222232 333355555
Q ss_pred cCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceee
Q 020174 118 LQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVN 197 (330)
Q Consensus 118 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~ 197 (330)
++ .|+..+|......+ . ....-.++.+.|.+.-+|=-..-...+.+++...++.+.++
T Consensus 84 ~~---~~~~svH~~~~~~~-----------------~--~~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin 141 (212)
T PRK06361 84 LG---AEIVVVHGETIVEP-----------------V--EEGTNLAAIECEDVDILAHPGLITEEEAELAAENGVFLEIT 141 (212)
T ss_pred CC---CEEEEECCCCcchh-----------------h--hhhhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEE
Confidence 54 46668995422111 0 00111456678887666533221122233333333322222
Q ss_pred ccccChhhhhHHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHH
Q 020174 198 QVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGKTVAQVCLRW 263 (330)
Q Consensus 198 q~~~~~~~~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~qlal~~ 263 (330)
- ..........++++|++.|+.++.-+.... +..+...+.+..++++.|.+..++---+
T Consensus 142 ~-~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~------~~d~~~~~~~~~i~~~~gl~~~~v~~~~ 200 (212)
T PRK06361 142 A-RKGHSLTNGHVARIAREAGAPLVINTDTHA------PSDLITYEFARKVALGAGLTEKELEEAL 200 (212)
T ss_pred C-CCCcccchHHHHHHHHHhCCcEEEECCCCC------HHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 1 111112236799999999999888776653 2333345677788888888887765443
No 52
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=57.48 E-value=1.3e+02 Score=26.83 Aligned_cols=98 Identities=14% Similarity=0.101 Sum_probs=61.6
Q ss_pred HHHHcCCcceEec--CCCCHHHHHHHHHhCCCCceeeccccChhhhh--HHHHHHHHhcCCeEEEeccCCcCCCCCCCCC
Q 020174 163 ECQRHGLTKSIGV--SNFSPKKIETILAFATIPPTVNQVEMNPAWQQ--RKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQ 238 (330)
Q Consensus 163 ~l~~~GkIr~iGv--s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~l~~~~~~gi~via~~~l~~~G~l~~~~~ 238 (330)
+..++|+. .+|+ ...++..++ .+...+++++++=++-++...+ ..++..|+..|+.++..-|-..
T Consensus 5 ~~l~~g~~-~~g~~~~~~~p~~~e-~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~--------- 73 (249)
T TIGR02311 5 QALKEGQP-QIGLWLGLADPYAAE-ICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD--------- 73 (249)
T ss_pred HHHHCCCc-eEEEEEeCCCcHHHH-HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC---------
Confidence 33445775 3444 333344444 4455567877777777775443 3477777788888777654432
Q ss_pred CCChHHHHHHHHHhCCCHHHHHHHHHHhcC--CEEeeCCCCHHHHHHhhccccc
Q 020174 239 VMNNEALKQIAAAHGKTVAQVCLRWIIEQG--ATAAVKSFNKERLKENLEIFDW 290 (330)
Q Consensus 239 ~~~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~~~~~ 290 (330)
+ .-++.+|..| .+++|-..+++++++.+++..+
T Consensus 74 -----------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 -----------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred -----------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 1366777777 5777888888888888777654
No 53
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=57.41 E-value=1.3e+02 Score=26.05 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=70.2
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCC----------CCcC-----CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCCh
Q 020174 40 IDESAMKSAVLESIKLGYRHFDTA----------SLYG-----TERALGEAIAEALKLGLVASREELFITTKLWCSDAHR 104 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg-----se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~ 104 (330)
.+.++..+..+.+.+.|+..||-- +.|| .-+.+-+.++...+ .. .+-|..|+.......
T Consensus 64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~-~~-----~~~v~vk~r~~~~~~ 137 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVRE-AV-----PIPVTVKIRLGWDDE 137 (231)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHH-hc-----CCCEEEEEeeccCCc
Confidence 346777788888888999988753 4576 34555566665411 11 145666764322111
Q ss_pred hhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCC-CHHHH
Q 020174 105 DLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNF-SPKKI 183 (330)
Q Consensus 105 ~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~-~~~~l 183 (330)
+... .+-+.|+..|+ |.+.+|........ .....|+.+.++++.-.+.-++..+. +.+.+
T Consensus 138 ~~~~-~~~~~l~~~Gv---d~i~v~~~~~~~~~---------------~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 138 EETL-ELAKALEDAGA---SALTVHGRTREQRY---------------SGPADWDYIAEIKEAVSIPVIANGDIFSLEDA 198 (231)
T ss_pred hHHH-HHHHHHHHhCC---CEEEECCCCHHHcC---------------CCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHH
Confidence 1222 23334566675 55566764321100 00123556667777777777776665 47777
Q ss_pred HHHHHhCC
Q 020174 184 ETILAFAT 191 (330)
Q Consensus 184 ~~~~~~~~ 191 (330)
.++++...
T Consensus 199 ~~~l~~~g 206 (231)
T cd02801 199 LRCLEQTG 206 (231)
T ss_pred HHHHHhcC
Confidence 77777644
No 54
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=57.03 E-value=1.7e+02 Score=27.46 Aligned_cols=91 Identities=20% Similarity=0.152 Sum_probs=49.0
Q ss_pred CceEEEeecCCCCC-----ChhhHHHHHHHHHhhcCCCccce-EEeec-CCCCCCCccccCCCCccccccccHHHHHHHH
Q 020174 89 EELFITTKLWCSDA-----HRDLVVPALKKSLKTLQIEYVDL-YLIHW-PMSAKPSEKLRNDIPEEDLVSLDYNGVWEAM 161 (330)
Q Consensus 89 ~~v~I~tK~~~~~~-----~~~~i~~~le~sL~~Lg~d~iDl-~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 161 (330)
.++.|..|+...+. +.+.. ..+-+.|+.+|+|++++ ...|. +...... ...........
T Consensus 203 ~d~~v~iRi~~~D~~~~g~~~~e~-~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~-------------~~~~~~~~~~~ 268 (353)
T cd02930 203 EDFIIIYRLSMLDLVEGGSTWEEV-VALAKALEAAGADILNTGIGWHEARVPTIAT-------------SVPRGAFAWAT 268 (353)
T ss_pred CCceEEEEecccccCCCCCCHHHH-HHHHHHHHHcCCCEEEeCCCcCCCCCccccc-------------cCCchhhHHHH
Confidence 56778888865432 22322 23445678889888877 22232 1110000 00001123345
Q ss_pred HHHHHcCCcceEecCCC-CHHHHHHHHHhCCCC
Q 020174 162 EECQRHGLTKSIGVSNF-SPKKIETILAFATIP 193 (330)
Q Consensus 162 ~~l~~~GkIr~iGvs~~-~~~~l~~~~~~~~~~ 193 (330)
.++++.=.+.-++.-.+ +++..+++++.+..+
T Consensus 269 ~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D 301 (353)
T cd02930 269 AKLKRAVDIPVIASNRINTPEVAERLLADGDAD 301 (353)
T ss_pred HHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCC
Confidence 56677667777776554 677788888776543
No 55
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=56.30 E-value=2.1e+02 Score=28.24 Aligned_cols=113 Identities=13% Similarity=0.075 Sum_probs=62.6
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhcCC
Q 020174 41 DESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQI 120 (330)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~ 120 (330)
+++-....++.|.++|+..|=..+.-.-.+.+-.+++..-+.|. .-++.|+-... ..++.+.+.+.+++ +..+|.
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~---~~~~~i~yt~s-p~~t~~y~~~~a~~-l~~~Ga 177 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGK---EAQLCIAYTTS-PVHTLNYYLSLVKE-LVEMGA 177 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCC---EEEEEEEEEeC-CcCcHHHHHHHHHH-HHHcCC
Confidence 34556778899999999887766655433334444443322252 22233443332 23445556655555 556786
Q ss_pred CccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCC
Q 020174 121 EYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFS 179 (330)
Q Consensus 121 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~ 179 (330)
| .+.|-.... ...+.++.+-+..+++...+ -||+-.|+
T Consensus 178 d---~I~IkDtaG-----------------~l~P~~v~~Lv~alk~~~~~-pi~~H~Hn 215 (468)
T PRK12581 178 D---SICIKDMAG-----------------ILTPKAAKELVSGIKAMTNL-PLIVHTHA 215 (468)
T ss_pred C---EEEECCCCC-----------------CcCHHHHHHHHHHHHhccCC-eEEEEeCC
Confidence 5 344432211 23356666666677765554 48888776
No 56
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=55.93 E-value=99 Score=28.28 Aligned_cols=97 Identities=18% Similarity=0.131 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHH
Q 020174 108 VPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETIL 187 (330)
Q Consensus 108 ~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~ 187 (330)
+..+-+.|.++|+++|.+-.++.|..... ..+.++.+..+.+...++...+. .+...++.++
T Consensus 28 k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~-----------------~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~ 89 (287)
T PRK05692 28 KIALIDRLSAAGLSYIEVASFVSPKWVPQ-----------------MADAAEVMAGIQRRPGVTYAALT-PNLKGLEAAL 89 (287)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcCcccccc-----------------cccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHH
Confidence 44566779999999999875544431110 11234555555544446655554 4678888887
Q ss_pred HhCCCCceeeccccChhhh--------------hHHHHHHHHhcCCeEEE
Q 020174 188 AFATIPPTVNQVEMNPAWQ--------------QRKLVEFCKSKSIIVTA 223 (330)
Q Consensus 188 ~~~~~~~~~~q~~~~~~~~--------------~~~~l~~~~~~gi~via 223 (330)
+.+. +.+..-+..|.... -.+.+++++++|+.+.+
T Consensus 90 ~~g~-~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 90 AAGA-DEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred HcCC-CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 7642 32222233333211 14688999999998864
No 57
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=55.79 E-value=99 Score=29.99 Aligned_cols=74 Identities=19% Similarity=0.337 Sum_probs=40.6
Q ss_pred CCChhhHHHHHHHHHhhcCCCccceEEe-ecCCCCCCCccccC-CCCccccccccHHHHHH-HHHHHHHcCCcceEecCC
Q 020174 101 DAHRDLVVPALKKSLKTLQIEYVDLYLI-HWPMSAKPSEKLRN-DIPEEDLVSLDYNGVWE-AMEECQRHGLTKSIGVSN 177 (330)
Q Consensus 101 ~~~~~~i~~~le~sL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~L~~l~~~GkIr~iGvs~ 177 (330)
.-+.+.+.+.+++.+ .|+.|+|.+|.+ |-|........... .... .....+.++ ..+.|.+.|. +.+|+||
T Consensus 200 ~QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~----~d~~~~~~~~~~e~L~~~Gy-~~yeisn 273 (416)
T COG0635 200 GQTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPD----EDEKADMYELVEELLEKAGY-RQYEISN 273 (416)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcC----hHHHHHHHHHHHHHHHHCCC-cEEeech
Confidence 345566666666655 477999999988 44432221110000 0000 001223444 4555667777 8999999
Q ss_pred CCH
Q 020174 178 FSP 180 (330)
Q Consensus 178 ~~~ 180 (330)
|..
T Consensus 274 fa~ 276 (416)
T COG0635 274 FAK 276 (416)
T ss_pred hcC
Confidence 976
No 58
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=55.26 E-value=1.1e+02 Score=28.37 Aligned_cols=107 Identities=13% Similarity=0.182 Sum_probs=67.2
Q ss_pred CCcceEecCCCCHHHHHHHHHhCCCC-ce-----eeccccChhhhhHHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCC
Q 020174 168 GLTKSIGVSNFSPKKIETILAFATIP-PT-----VNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMN 241 (330)
Q Consensus 168 GkIr~iGvs~~~~~~l~~~~~~~~~~-~~-----~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~ 241 (330)
.++-.+.=++++.+..+.+.+...-. +. .+-+-+--..+++.+.+++++.+.-++.-+.-. -.
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~S-----------sN 224 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNS-----------SN 224 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCC-----------cc
Confidence 55555555666666666554432101 11 111122223445778899998887777622221 23
Q ss_pred hHHHHHHHHHhCC------CHHHHHHHHHHhcC-CEEeeCCCCHHHHHHhh
Q 020174 242 NEALKQIAAAHGK------TVAQVCLRWIIEQG-ATAAVKSFNKERLKENL 285 (330)
Q Consensus 242 ~~~l~~la~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~~nl 285 (330)
-..|.++|++++. ++.++-..|..... +-+..|+|+|+.+-+.+
T Consensus 225 T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 225 SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 4689999999863 78999999997665 77789999999776554
No 59
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=54.38 E-value=1.8e+02 Score=26.96 Aligned_cols=129 Identities=15% Similarity=0.168 Sum_probs=74.5
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCC----------CCcC-----CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCC-CC
Q 020174 40 IDESAMKSAVLESIKLGYRHFDTA----------SLYG-----TERALGEAIAEALKLGLVASREELFITTKLWCSD-AH 103 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg-----se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~-~~ 103 (330)
.++++..+..+.+.+.|+..||.- ..+| +-+.+.+.++...+ . - ++-|+.|+.... .+
T Consensus 74 ~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~-a---~--d~pv~vKiR~G~~~~ 147 (321)
T PRK10415 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVN-A---V--DVPVTLKIRTGWAPE 147 (321)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHH-h---c--CCceEEEEEccccCC
Confidence 567777777777788999999942 3345 24555565555411 1 1 345777774321 11
Q ss_pred hhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCC-CHHH
Q 020174 104 RDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNF-SPKK 182 (330)
Q Consensus 104 ~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~-~~~~ 182 (330)
..... .+-+.++..|. |.+.+|.-....... -..-|+.+.++++.=.|--||.... +.+.
T Consensus 148 ~~~~~-~~a~~le~~G~---d~i~vh~rt~~~~~~---------------G~a~~~~i~~ik~~~~iPVI~nGgI~s~~d 208 (321)
T PRK10415 148 HRNCV-EIAQLAEDCGI---QALTIHGRTRACLFN---------------GEAEYDSIRAVKQKVSIPVIANGDITDPLK 208 (321)
T ss_pred cchHH-HHHHHHHHhCC---CEEEEecCccccccC---------------CCcChHHHHHHHHhcCCcEEEeCCCCCHHH
Confidence 11222 33344677775 667788643211100 0123667778887777888887765 5778
Q ss_pred HHHHHHhCCCC
Q 020174 183 IETILAFATIP 193 (330)
Q Consensus 183 l~~~~~~~~~~ 193 (330)
.+++++..+.+
T Consensus 209 a~~~l~~~gad 219 (321)
T PRK10415 209 ARAVLDYTGAD 219 (321)
T ss_pred HHHHHhccCCC
Confidence 88888765433
No 60
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=53.30 E-value=1.5e+02 Score=26.70 Aligned_cols=106 Identities=14% Similarity=0.076 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCC---HHH
Q 020174 106 LVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFS---PKK 182 (330)
Q Consensus 106 ~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~---~~~ 182 (330)
.-+..+-+.|.++|+|+|++=+.........+. . .....+.++.+..+.+ +..+..+++... .+.
T Consensus 20 ~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~----------~-~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~ 87 (266)
T cd07944 20 EFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGK----------S-AFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDL 87 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEeecCCCCccccCCC----------c-cCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHH
Confidence 444566677999999999997765432111100 0 1112455666655543 346656655433 344
Q ss_pred HHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEe
Q 020174 183 IETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAF 224 (330)
Q Consensus 183 l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~ 224 (330)
+..+.+ ..++.+-+.+..+....-.+.+++++++|+.|...
T Consensus 88 l~~a~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 88 LEPASG-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred HHHHhc-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 444433 23444334444454444467899999999877654
No 61
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=53.13 E-value=2e+02 Score=27.00 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCcceEecCCC-CHHHHHHHHHhCCCCc
Q 020174 158 WEAMEECQRHGLTKSIGVSNF-SPKKIETILAFATIPP 194 (330)
Q Consensus 158 ~~~L~~l~~~GkIr~iGvs~~-~~~~l~~~~~~~~~~~ 194 (330)
|.....+|+.=++--+++.+. +++..+++++....+.
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~ 311 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADM 311 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCe
Confidence 455556666556777777764 6788888888765443
No 62
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=52.50 E-value=55 Score=29.24 Aligned_cols=79 Identities=15% Similarity=0.166 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHcCCCeEeCCCCcC--CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCC------CChhhHHHHHHH
Q 020174 42 ESAMKSAVLESIKLGYRHFDTASLYG--TERALGEAIAEALKLGLVASREELFITTKLWCSD------AHRDLVVPALKK 113 (330)
Q Consensus 42 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg--se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~------~~~~~i~~~le~ 113 (330)
.....+.++.+-+.|++.++.++.+- +++.--+.++.. ....+.+.|-++..+ .+++.+.+++++
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~-------~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~ 155 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA-------KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKR 155 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH-------CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHH
T ss_pred cChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH-------HHCCCEEeecccCCCchhcccCCHHHHHHHHHH
Confidence 44567788888899999999998765 566667778776 556688998887643 234556666666
Q ss_pred HHhhcCCCccceEEeecC
Q 020174 114 SLKTLQIEYVDLYLIHWP 131 (330)
Q Consensus 114 sL~~Lg~d~iDl~~lH~p 131 (330)
-|+. | .|.+++-.-
T Consensus 156 dLeA-G---A~~ViiEar 169 (244)
T PF02679_consen 156 DLEA-G---ADKVIIEAR 169 (244)
T ss_dssp HHHH-T---ECEEEE--T
T ss_pred HHHC-C---CCEEEEeee
Confidence 6655 4 466777654
No 63
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=51.77 E-value=2.2e+02 Score=26.98 Aligned_cols=101 Identities=17% Similarity=0.111 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHH
Q 020174 106 LVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIET 185 (330)
Q Consensus 106 ~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~ 185 (330)
.-+..+-+.|.++|+++|++-..-.|... |. -.+..++++.+. +....+..+++ .+...++.
T Consensus 68 e~Ki~ia~~L~~~GV~~IEvGs~vspk~v-Pq-------------mad~~ev~~~i~---~~~~~~~~~l~-~n~~die~ 129 (347)
T PLN02746 68 SVKVELIQRLVSSGLPVVEATSFVSPKWV-PQ-------------LADAKDVMAAVR---NLEGARFPVLT-PNLKGFEA 129 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCcccc-cc-------------cccHHHHHHHHH---hccCCceeEEc-CCHHHHHH
Confidence 44556777899999999998754444211 10 011334455443 33335555554 47888998
Q ss_pred HHHhCCCCceeeccccChhhh---------h-----HHHHHHHHhcCCeEEEec
Q 020174 186 ILAFATIPPTVNQVEMNPAWQ---------Q-----RKLVEFCKSKSIIVTAFS 225 (330)
Q Consensus 186 ~~~~~~~~~~~~q~~~~~~~~---------~-----~~~l~~~~~~gi~via~~ 225 (330)
+++.+. +.+.+-+..|.... + .+++++|+++|+.+.++-
T Consensus 130 A~~~g~-~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i 182 (347)
T PLN02746 130 AIAAGA-KEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYV 182 (347)
T ss_pred HHHcCc-CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 887643 32223233333221 1 368899999999886433
No 64
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=51.70 E-value=1.7e+02 Score=26.38 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHH
Q 020174 104 RDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKI 183 (330)
Q Consensus 104 ~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l 183 (330)
.+.+.+..++. ..-|.|+||+=.=-.+ . ...+.+...++.+++.-.+ -|.+-+++++.+
T Consensus 24 ~~~i~~~A~~~-~~~GAdiIDVg~~~~~----~---------------eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~ 82 (261)
T PRK07535 24 AAFIQKLALKQ-AEAGADYLDVNAGTAV----E---------------EEPETMEWLVETVQEVVDV-PLCIDSPNPAAI 82 (261)
T ss_pred HHHHHHHHHHH-HHCCCCEEEECCCCCc----h---------------hHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHH
Confidence 45555544443 4678999998643111 0 0134455666666654333 378889999999
Q ss_pred HHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEecc
Q 020174 184 ETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSP 226 (330)
Q Consensus 184 ~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~ 226 (330)
+.+++...-.+.++-+.... .....+++.+++.|..++....
T Consensus 83 eaaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 83 EAGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred HHHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEec
Confidence 99998743244555433321 1235789999999999998654
No 65
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=51.67 E-value=1.7e+02 Score=26.80 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=67.5
Q ss_pred CCcceEecCCCCHHHHHHHHHhCC--C-Cc-eeeccccChhhhhHHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCChH
Q 020174 168 GLTKSIGVSNFSPKKIETILAFAT--I-PP-TVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNE 243 (330)
Q Consensus 168 GkIr~iGvs~~~~~~l~~~~~~~~--~-~~-~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~ 243 (330)
.++-.+.=++.+.+....+.+... + .. ..+-+-+--..+|+.+.+++++-++-++.-+.-. -.-.
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~S-----------sNT~ 225 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHS-----------SNTQ 225 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCC-----------ccHH
Confidence 444455555666666655544321 1 11 1222222233456778899988887777622221 2346
Q ss_pred HHHHHHHHhCC------CHHHHHHHHHHhcC-CEEeeCCCCHHHHHHhh
Q 020174 244 ALKQIAAAHGK------TVAQVCLRWIIEQG-ATAAVKSFNKERLKENL 285 (330)
Q Consensus 244 ~l~~la~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~~nl 285 (330)
.|.++|++.+. ++.++-..|..... +-+..|+|+|+.+-+.+
T Consensus 226 rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 226 KLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 89999999874 78899899998766 77779999999876654
No 66
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=50.45 E-value=1.2e+02 Score=27.43 Aligned_cols=85 Identities=16% Similarity=0.097 Sum_probs=56.4
Q ss_pred ccceeccccCCChh-HHHHHHHHHHHcCCCeEeCCCCcC----CH---HHHHHHHHHHHhcCCCCCCCceEEEeecCCCC
Q 020174 30 VIGLGSAVDNIDES-AMKSAVLESIKLGYRHFDTASLYG----TE---RALGEAIAEALKLGLVASREELFITTKLWCSD 101 (330)
Q Consensus 30 ~lglG~~~~~~~~~-~~~~~l~~A~~~Gi~~~DtA~~Yg----se---~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~ 101 (330)
++.+=|..+ +++ +...+.+.|+++|..|+=|+..|+ +. +++-+.+++. + ...+ +--|....=
T Consensus 135 KVIlEt~~L--~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~---~---~~~~--vgIKAsGGI 204 (257)
T PRK05283 135 KVIIETGEL--KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM---G---VAKT--VGFKPAGGV 204 (257)
T ss_pred EEEEecccc--CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc---c---cCCC--eeEEccCCC
Confidence 444444443 344 477888999999999999999996 22 2333333322 1 1122 555664444
Q ss_pred CChhhHHHHHHHHHhhcCCCccc
Q 020174 102 AHRDLVVPALKKSLKTLQIEYVD 124 (330)
Q Consensus 102 ~~~~~i~~~le~sL~~Lg~d~iD 124 (330)
.+.+....-++.--+.||.+|++
T Consensus 205 rt~~~A~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 205 RTAEDAAQYLALADEILGADWAD 227 (257)
T ss_pred CCHHHHHHHHHHHHHHhChhhcC
Confidence 56788888899999999999876
No 67
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=50.29 E-value=38 Score=32.93 Aligned_cols=108 Identities=17% Similarity=0.095 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCC-CCChhhH----------HHHHHHHHhhcCCCccceEEeecCCCCCC
Q 020174 68 TERALGEAIAEALKLGLVASREELFITTKLWCS-DAHRDLV----------VPALKKSLKTLQIEYVDLYLIHWPMSAKP 136 (330)
Q Consensus 68 se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~-~~~~~~i----------~~~le~sL~~Lg~d~iDl~~lH~p~~~~~ 136 (330)
.-+.+-.+-++.+... -+.++++++-++.- ...+-.+ .-.-.+.-+||.+.|+|..
T Consensus 149 TyeT~~~~~r~h~~gd---L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~---------- 215 (561)
T COG2987 149 TYETFAEAGRQHFGGD---LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI---------- 215 (561)
T ss_pred hHHHHHHHHHHhcCCC---ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh----------
Confidence 4444555555555433 57889999887532 1111111 1122344578889999865
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCC-CCceeeccccC
Q 020174 137 SEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFAT-IPPTVNQVEMN 202 (330)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~-~~~~~~q~~~~ 202 (330)
..+++++++-.++..++|+-..||+-..-++-++++++..- ++.+..|+..+
T Consensus 216 --------------a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaH 268 (561)
T COG2987 216 --------------AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAH 268 (561)
T ss_pred --------------cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccccccc
Confidence 12378999999999999999999999977888888887642 44455677654
No 68
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=49.84 E-value=85 Score=23.67 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEe
Q 020174 157 VWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAF 224 (330)
Q Consensus 157 ~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~ 224 (330)
+-.+|...++.|++. .|. .+..+.++......+++-...+. .....+..+|+.++|+++.|
T Consensus 4 ~~~~l~~a~ragkl~-~G~-----~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 4 FNRELRVAVDTGKVI-LGS-----KRTIKAIKLGKAKLVIVASNCPK-DIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHHHHHcCCEE-EcH-----HHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence 345688888899876 554 55666777676666666656544 33478999999999999776
No 69
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=49.53 E-value=1.2e+02 Score=23.71 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEe
Q 020174 155 NGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAF 224 (330)
Q Consensus 155 ~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~ 224 (330)
..++..|.-.++.|++. .|. .+..+.++......+++--+.++..-...+..+|+..+|+++-.
T Consensus 12 ~ki~~lL~la~ragkl~-~G~-----~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~ 75 (117)
T TIGR03677 12 NKALEAVEKARETGKIK-KGT-----NEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYV 75 (117)
T ss_pred HHHHHHHHHHHHcCCEe-EcH-----HHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEe
Confidence 56788899999999865 554 66777778777777777777777555578899999999997653
No 70
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=49.10 E-value=1.2e+02 Score=29.08 Aligned_cols=141 Identities=19% Similarity=0.216 Sum_probs=71.6
Q ss_pred CChhHHHHHHHHHHHcCCC-eEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeec----------CCCCCChhhHH
Q 020174 40 IDESAMKSAVLESIKLGYR-HFDTASLYGTERALGEAIAEALKLGLVASREELFITTKL----------WCSDAHRDLVV 108 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~-~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~----------~~~~~~~~~i~ 108 (330)
.+.+.-.+-+..|.+.|-. +.|-+.. |.-..+-+.+-+ +..+=|.|=- ...+.+.+.+.
T Consensus 73 ~d~~~E~~K~~~A~~~GADtvMDLStg-gdl~~iR~~il~---------~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~ 142 (420)
T PF01964_consen 73 SDIEEELEKLKIAEKAGADTVMDLSTG-GDLDEIRRAILE---------NSPVPVGTVPIYQAAIRKGGSIVDMTEDDFF 142 (420)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEE---S-TTHHHHHHHHHH---------T-SS-EEE-HHHHHHHHTTT-GGG--HHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCCC-CCHHHHHHHHHH---------hCCCccccchHHHHHHHhCCChhhCCHHHHH
Confidence 3445556677899999986 5577743 444444444432 2334444421 12356778888
Q ss_pred HHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHH
Q 020174 109 PALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILA 188 (330)
Q Consensus 109 ~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~ 188 (330)
+.+|+..+. =+|.+-+|.-- ..+.++.++++|++ .|+-+-...-+..++.
T Consensus 143 ~~ie~qa~~----GVDfmtiH~gi------------------------t~~~~~~~~~~~R~--~giVSRGGs~l~~WM~ 192 (420)
T PF01964_consen 143 DVIEKQAKD----GVDFMTIHCGI------------------------TRETLERLKKSGRI--MGIVSRGGSILAAWML 192 (420)
T ss_dssp HHHHHHHHH----T--EEEE-TT--------------------------GGGGGGGT--TSS--S----HHHHHHHHHHH
T ss_pred HHHHHHHHc----CCCEEEEccch------------------------hHHHHHHHhhhccc--cCccccchHHHHHHHH
Confidence 888877763 47889999752 23567788888775 4665555565666654
Q ss_pred hCCCCceeeccccChhhhh-HHHHHHHHhcCCeEEEeccCC
Q 020174 189 FATIPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVTAFSPLG 228 (330)
Q Consensus 189 ~~~~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~via~~~l~ 228 (330)
... .-||+... .++++.|+++++.+---..|-
T Consensus 193 ~n~--------~ENPly~~fD~lLeI~k~yDVtLSLGDglR 225 (420)
T PF01964_consen 193 HNG--------KENPLYEHFDRLLEIAKEYDVTLSLGDGLR 225 (420)
T ss_dssp HHT--------S--HHHHTHHHHHHHHTTTT-EEEE--TT-
T ss_pred hcC--------CcCcHHHhHHHHHHHHHHhCeeEecccccC
Confidence 422 23455444 689999999999886655443
No 71
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=48.69 E-value=63 Score=23.81 Aligned_cols=64 Identities=14% Similarity=0.255 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEec
Q 020174 156 GVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFS 225 (330)
Q Consensus 156 ~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~ 225 (330)
.+.+.|...++.|++. +|+ .+..+.++......++.--+.++......+..+|++++|+++-..
T Consensus 2 ~i~~~l~~a~~~~~lv-~G~-----~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 2 KIYKLLKLARKAGRLV-KGI-----KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHHHHHSEEE-ESH-----HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES
T ss_pred hHHHHHHHHHhcCCEE-Ech-----HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEEC
Confidence 3556777788888844 665 667777777777777776677665554558889999999997654
No 72
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=48.60 E-value=1e+02 Score=28.05 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=38.3
Q ss_pred CHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEeccCCc
Q 020174 179 SPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGA 229 (330)
Q Consensus 179 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~~ 229 (330)
+...+.++.+..+++..++-+.||+... ++-++|++.|+.+++.-|+..
T Consensus 202 D~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 202 DLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred HHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 4555566677778888888778866543 899999999999999999863
No 73
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=47.44 E-value=2.5e+02 Score=26.50 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=71.3
Q ss_pred ChhHHHHHHHHHHHc--C-CCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeecC--CCCCChhhHHHHHHHHH
Q 020174 41 DESAMKSAVLESIKL--G-YRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLW--CSDAHRDLVVPALKKSL 115 (330)
Q Consensus 41 ~~~~~~~~l~~A~~~--G-i~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~--~~~~~~~~i~~~le~sL 115 (330)
+.++..+++...... . +-.+|..+..++- -..+.+.+ + ...-++|.+|+- +.....+.+.+.+.+.+
T Consensus 49 ~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~---~~~l~~~~--~---~~piilV~NK~DLl~k~~~~~~~~~~l~~~~ 120 (360)
T TIGR03597 49 NDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL---IPELKRFV--G---GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA 120 (360)
T ss_pred CHHHHHHHHhhcccCCcEEEEEEECcCCCCCc---cHHHHHHh--C---CCCEEEEEEchhhCCCCCCHHHHHHHHHHHH
Confidence 455666665555432 1 2467876655431 01122221 1 345688999983 22233456666676777
Q ss_pred hhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHH
Q 020174 116 KTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETI 186 (330)
Q Consensus 116 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~ 186 (330)
+.+|....+++.+..-.. ...+++++.+.++++.+.+-.+|.+|.....+-..
T Consensus 121 k~~g~~~~~i~~vSAk~g------------------~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~ 173 (360)
T TIGR03597 121 KELGLKPVDIILVSAKKG------------------NGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINK 173 (360)
T ss_pred HHcCCCcCcEEEecCCCC------------------CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHH
Confidence 778765446666544321 12678888888887767899999999987665433
No 74
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=47.31 E-value=1.6e+02 Score=26.00 Aligned_cols=153 Identities=14% Similarity=0.064 Sum_probs=88.5
Q ss_pred EEcCCCCCCcccCccceeccccCCChhHH-HHHHHHHHHcCCCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEE--
Q 020174 17 VKLSSASGHRKMPVIGLGSAVDNIDESAM-KSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFI-- 93 (330)
Q Consensus 17 ~~lg~t~g~~~vs~lglG~~~~~~~~~~~-~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I-- 93 (330)
++||. | +.++.|.+=-.--+..+... .+++-=++..|.+.. .|.+|..+-++|++.-.-++ +-.+.|+
T Consensus 19 krLGG--G-iP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~----yvsTe~T~refi~qm~sl~y--dv~~~~l~G 89 (235)
T COG2874 19 KRLGG--G-IPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVT----YVSTELTVREFIKQMESLSY--DVSDFLLSG 89 (235)
T ss_pred hhccC--C-CccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEE----EEEechhHHHHHHHHHhcCC--CchHHHhcc
Confidence 46776 6 77766544222111223333 344444567888754 23467777777776533233 3333333
Q ss_pred -----EeecCCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcC
Q 020174 94 -----TTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHG 168 (330)
Q Consensus 94 -----~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G 168 (330)
...+.+...++...+.-++..++..+.-.-|++.+...+.....+ ......+.+..+..|.+.|
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-----------~~~~vl~fm~~~r~l~d~g 158 (235)
T COG2874 90 RLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-----------SEDAVLNFMTFLRKLSDLG 158 (235)
T ss_pred eeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-----------cHHHHHHHHHHHHHHHhCC
Confidence 333334445567778888888888887778999998875432211 0122456777778888999
Q ss_pred CcceEecCCC--CHHHHHHHHHh
Q 020174 169 LTKSIGVSNF--SPKKIETILAF 189 (330)
Q Consensus 169 kIr~iGvs~~--~~~~l~~~~~~ 189 (330)
|+--+-+... +.+.+-++...
T Consensus 159 KvIilTvhp~~l~e~~~~rirs~ 181 (235)
T COG2874 159 KVIILTVHPSALDEDVLTRIRSA 181 (235)
T ss_pred CEEEEEeChhhcCHHHHHHHHHh
Confidence 9888877643 34444444433
No 75
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=47.15 E-value=2.4e+02 Score=26.15 Aligned_cols=132 Identities=10% Similarity=0.058 Sum_probs=78.1
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCC---C-----CcC-------CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCCh
Q 020174 40 IDESAMKSAVLESIKLGYRHFDTA---S-----LYG-------TERALGEAIAEALKLGLVASREELFITTKLWCSDAHR 104 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA---~-----~Yg-------se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~ 104 (330)
.++++..+....+.+.|+..||-- + .|| .-+.+.+.++...+ . -..++-|+.|+.....+.
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~-~---~~~~~pVsvKiR~g~~~~ 147 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMRE-A---VPAHLPVTVKVRLGWDSG 147 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHH-h---cCCCcceEEEEECCCCCc
Confidence 567777777788888999999832 1 233 24455666655421 1 112467888875432222
Q ss_pred hhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCC-CHHHH
Q 020174 105 DLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNF-SPKKI 183 (330)
Q Consensus 105 ~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~-~~~~l 183 (330)
+. ...+-+.|+..| +|.+.+|.-....... . ..--|+...++++.-.|.-||.... ++++.
T Consensus 148 ~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~------------g--~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da 209 (312)
T PRK10550 148 ER-KFEIADAVQQAG---ATELVVHGRTKEDGYR------------A--EHINWQAIGEIRQRLTIPVIANGEIWDWQSA 209 (312)
T ss_pred hH-HHHHHHHHHhcC---CCEEEECCCCCccCCC------------C--CcccHHHHHHHHhhcCCcEEEeCCcCCHHHH
Confidence 22 235556677777 5777888643211100 0 0012567778888778888888876 57888
Q ss_pred HHHHHhCCCC
Q 020174 184 ETILAFATIP 193 (330)
Q Consensus 184 ~~~~~~~~~~ 193 (330)
.++++..+.+
T Consensus 210 ~~~l~~~g~D 219 (312)
T PRK10550 210 QQCMAITGCD 219 (312)
T ss_pred HHHHhccCCC
Confidence 8888665433
No 76
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=47.14 E-value=3.3e+02 Score=27.84 Aligned_cols=210 Identities=12% Similarity=0.087 Sum_probs=117.3
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCcCC-------------HHHHHHHHHHHHhcCCCCCCCceEEEeecCCCC-----
Q 020174 40 IDESAMKSAVLESIKLGYRHFDTASLYGT-------------ERALGEAIAEALKLGLVASREELFITTKLWCSD----- 101 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygs-------------e~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~----- 101 (330)
..++...++-+..+++|-+.+.|...+.| +++...+++-. .... . .+++|+.-+++..
T Consensus 40 ~~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lA--r~a~-~-~~~~VagsiGP~g~~~~~ 115 (612)
T PRK08645 40 SHPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLA--REAA-G-DDVYVAGTIGPIGGRGPL 115 (612)
T ss_pred cCHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHH--HHHh-c-CCCeEEEeCCCCCCCCCC
Confidence 35666677666778999999988844333 22222223211 1110 2 3478888887532
Q ss_pred --CChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcC-CcceEecCCC
Q 020174 102 --AHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHG-LTKSIGVSNF 178 (330)
Q Consensus 102 --~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-kIr~iGvs~~ 178 (330)
.+.+.+++......+.|.-.-+|++++-... +..++..+++.+++.+ +=-.+.++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~gvD~l~~ET~~--------------------~~~Ea~a~~~a~~~~~~~p~~~Sf~~~ 175 (612)
T PRK08645 116 GDISLEEIRREFREQIDALLEEGVDGLLLETFY--------------------DLEELLLALEAAREKTDLPIIAQVAFH 175 (612)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCEEEEEccC--------------------CHHHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 3567788888888888865669999998652 2567777777777665 3223444421
Q ss_pred ---------CHHHHHHHHHhCCCCceeeccccCh-hhhhHHHHHHHHh-cCCeEEEeccCCcCCCCCCCCCCCChHHHHH
Q 020174 179 ---------SPKKIETILAFATIPPTVNQVEMNP-AWQQRKLVEFCKS-KSIIVTAFSPLGAVGSSWGTNQVMNNEALKQ 247 (330)
Q Consensus 179 ---------~~~~l~~~~~~~~~~~~~~q~~~~~-~~~~~~~l~~~~~-~gi~via~~~l~~~G~l~~~~~~~~~~~l~~ 247 (330)
+...+...+.. .+++.+-+|+.. ...-..+++.... .++.+++|-.- |....... ..
T Consensus 176 ~~g~l~~G~~~~~~~~~~~~--~~~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vypNa---G~~~~~~~----~~--- 243 (612)
T PRK08645 176 EDGVTQNGTSLEEALKELVA--AGADVVGLNCGLGPYHMLEALERIPIPENAPLSAYPNA---GLPEYVDG----RY--- 243 (612)
T ss_pred CCCeeCCCCCHHHHHHHHHh--CCCCEEEecCCCCHHHHHHHHHHHHhccCceEEEEECC---CCCCCCCC----cc---
Confidence 12333333332 346788888874 3322344444433 35666666432 32110000 00
Q ss_pred HHHHhCCC---HHHHHHHHHHhcCCEEeeCC--CCHHHHHHhhcccc
Q 020174 248 IAAAHGKT---VAQVCLRWIIEQGATAAVKS--FNKERLKENLEIFD 289 (330)
Q Consensus 248 la~~~~~s---~~qlal~~~l~~~~~~i~g~--~~~~~l~~nl~~~~ 289 (330)
.+..+ .++.+..|.-. |+.+|=|+ ++|+|+++..+.++
T Consensus 244 ---~~~~~p~~~~~~~~~~~~~-Ga~iiGGCCgt~P~hI~~la~~l~ 286 (612)
T PRK08645 244 ---VYSANPEYFAEYALEFVEQ-GVRLIGGCCGTTPEHIRAMARALK 286 (612)
T ss_pred ---ccCCCHHHHHHHHHHHHHh-CCCEEeEecCCCHHHHHHHHHHhc
Confidence 01112 36677788665 75555333 78999888777665
No 77
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=46.86 E-value=61 Score=29.62 Aligned_cols=107 Identities=18% Similarity=0.214 Sum_probs=62.8
Q ss_pred CCcceEecCCCCHHHHHHHHHhCC--CCc----eeeccccChhhhhHHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCC
Q 020174 168 GLTKSIGVSNFSPKKIETILAFAT--IPP----TVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMN 241 (330)
Q Consensus 168 GkIr~iGvs~~~~~~l~~~~~~~~--~~~----~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~ 241 (330)
+++-.+.=++++.+..+++.+... .+- ..+.+-+--..+++.+.+++++-++-++.-+.-. -.
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~S-----------sN 223 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNS-----------SN 223 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT------------HH
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCC-----------cc
Confidence 477777777777766665544321 111 1222222223445778888888887666622221 13
Q ss_pred hHHHHHHHHHhCC------CHHHHHHHHHHhcC-CEEeeCCCCHHHHHHhh
Q 020174 242 NEALKQIAAAHGK------TVAQVCLRWIIEQG-ATAAVKSFNKERLKENL 285 (330)
Q Consensus 242 ~~~l~~la~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~~nl 285 (330)
-..|.++|++++. ++.++-..|.-... +-+..|+|+|+.+-+.+
T Consensus 224 T~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 224 TRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 4689999999874 78899999988876 77789999999887654
No 78
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=46.47 E-value=31 Score=22.93 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=26.8
Q ss_pred CCCCCCcCcc-CCCcCeEEcCCCCCCcccCccceeccccC
Q 020174 1 MAANSEPMNV-SINVPEVKLSSASGHRKMPVIGLGSAVDN 39 (330)
Q Consensus 1 ~~~~~~~~~~-~~~m~~~~lg~t~g~~~vs~lglG~~~~~ 39 (330)
|-|+-.|.+- +|.-.-+.|+.| | +.||.+-+|+++-|
T Consensus 1 MqP~tqPLaqalPfs~~~~l~dt-g-lrvpv~KmGtgweG 38 (61)
T PF15221_consen 1 MQPQTQPLAQALPFSLGRALRDT-G-LRVPVIKMGTGWEG 38 (61)
T ss_pred CCCCCCchhhhCCcccccccccc-c-cCCceeeecchHHH
Confidence 4566555543 444556889999 9 99999999998744
No 79
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=45.63 E-value=1.2e+02 Score=23.92 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEe
Q 020174 155 NGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAF 224 (330)
Q Consensus 155 ~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~ 224 (330)
..++..|.-.++.|++. .|. .+..+.++......+++--..++..-...+..+|+++||+++-.
T Consensus 16 ~ki~~lL~la~ragklv-~G~-----~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~ 79 (122)
T PRK04175 16 EKALEAVEKARDTGKIK-KGT-----NETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYV 79 (122)
T ss_pred HHHHHHHHHHHHcCCEe-EcH-----HHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEE
Confidence 45788888999999876 554 56677777777777777777776544467889999999997553
No 80
>COG0218 Predicted GTPase [General function prediction only]
Probab=44.51 E-value=2.1e+02 Score=24.76 Aligned_cols=133 Identities=12% Similarity=0.034 Sum_probs=79.6
Q ss_pred CcCccCCCcCeEEcCCCCCCcc-cCccceeccccC-CChhHHHHHHHHHHH------cCCCeEeCCCCcC-CHHHHHHHH
Q 020174 6 EPMNVSINVPEVKLSSASGHRK-MPVIGLGSAVDN-IDESAMKSAVLESIK------LGYRHFDTASLYG-TERALGEAI 76 (330)
Q Consensus 6 ~~~~~~~~m~~~~lg~t~g~~~-vs~lglG~~~~~-~~~~~~~~~l~~A~~------~Gi~~~DtA~~Yg-se~~lG~~l 76 (330)
-+......+.+..+++ + +. |=.-|||-+... .-.+....++...++ ..+-++|.-..-- .+..+=+++
T Consensus 55 ktPGrTq~iNff~~~~--~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l 131 (200)
T COG0218 55 KTPGRTQLINFFEVDD--E-LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFL 131 (200)
T ss_pred CCCCccceeEEEEecC--c-EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHH
Confidence 3344455566666666 4 43 334488877643 123345556655554 3455778665433 466677788
Q ss_pred HHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhcCCCccce--EEeecCCCCCCCccccCCCCccccccccH
Q 020174 77 AEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDL--YLIHWPMSAKPSEKLRNDIPEEDLVSLDY 154 (330)
Q Consensus 77 ~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl--~~lH~p~~~~~~~~~~~~~~~~~~~~~~~ 154 (330)
... ...=+++.||. .........+.+....+.|+.+..|- +.+..... ....
T Consensus 132 ~~~-------~i~~~vv~tK~--DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~-----------------k~Gi 185 (200)
T COG0218 132 LEL-------GIPVIVVLTKA--DKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLK-----------------KKGI 185 (200)
T ss_pred HHc-------CCCeEEEEEcc--ccCChhHHHHHHHHHHHHhcCCCCccceEEEEeccc-----------------ccCH
Confidence 776 45678899997 33445667778888888998777665 33332211 1126
Q ss_pred HHHHHHHHHHHHc
Q 020174 155 NGVWEAMEECQRH 167 (330)
Q Consensus 155 ~~~~~~L~~l~~~ 167 (330)
+++++.+.+...+
T Consensus 186 ~~l~~~i~~~~~~ 198 (200)
T COG0218 186 DELKAKILEWLKE 198 (200)
T ss_pred HHHHHHHHHHhhc
Confidence 7777777766543
No 81
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=44.43 E-value=2.8e+02 Score=26.24 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=16.3
Q ss_pred cceEecCCCCHHHHHHHHHhCCCCc
Q 020174 170 TKSIGVSNFSPKKIETILAFATIPP 194 (330)
Q Consensus 170 Ir~iGvs~~~~~~l~~~~~~~~~~~ 194 (330)
+.-+++..++++..+++++.+..+.
T Consensus 293 ~pv~~~G~~~~~~ae~~i~~G~~D~ 317 (362)
T PRK10605 293 GVIIGAGAYTAEKAETLIGKGLIDA 317 (362)
T ss_pred CCEEEeCCCCHHHHHHHHHcCCCCE
Confidence 3445555668888888888765443
No 82
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=43.85 E-value=79 Score=26.10 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHcCCCeEeCCCCcC-CHHHHHHHHHHHHhcCCCCCCCceEEEee-cCCCCCChhhHHHHHHHHHhhcCC
Q 020174 43 SAMKSAVLESIKLGYRHFDTASLYG-TERALGEAIAEALKLGLVASREELFITTK-LWCSDAHRDLVVPALKKSLKTLQI 120 (330)
Q Consensus 43 ~~~~~~l~~A~~~Gi~~~DtA~~Yg-se~~lG~~l~~~~~~g~~~~R~~v~I~tK-~~~~~~~~~~i~~~le~sL~~Lg~ 120 (330)
+..+-.+.+|-+.||.+|=.|..|| +...+-+.+. | . =++++.|- .+-...+.-.+...+++-|+..|.
T Consensus 14 ~tle~a~erA~elgik~~vVAS~tG~tA~k~lemve-----g---~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa 84 (186)
T COG1751 14 ETLEIAVERAKELGIKHIVVASSTGYTALKALEMVE-----G---D-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGA 84 (186)
T ss_pred HHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcc-----c---C-ceEEEEEeecccccCCceecCHHHHHHHHHcCc
Confidence 3455666888889999999999998 3332223322 2 1 23444444 343344456788889999999996
Q ss_pred C
Q 020174 121 E 121 (330)
Q Consensus 121 d 121 (330)
+
T Consensus 85 ~ 85 (186)
T COG1751 85 K 85 (186)
T ss_pred e
Confidence 4
No 83
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=43.76 E-value=2.1e+02 Score=24.84 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=76.1
Q ss_pred hHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHH
Q 020174 106 LVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIET 185 (330)
Q Consensus 106 ~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~ 185 (330)
..+..+-+.|.++|+++|++- .|.... +..+.++.+.+.... .+..+++......++.
T Consensus 14 ~~k~~i~~~L~~~Gv~~iEvg---~~~~~~-----------------~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~ 71 (237)
T PF00682_consen 14 EEKLEIAKALDEAGVDYIEVG---FPFASE-----------------DDFEQVRRLREALPN--ARLQALCRANEEDIER 71 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE---HCTSSH-----------------HHHHHHHHHHHHHHS--SEEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEc---ccccCH-----------------HHHHHhhhhhhhhcc--cccceeeeehHHHHHH
Confidence 344556667999999999888 221110 123444555555555 4445555556666666
Q ss_pred HHH---hCCCCceeeccccChhh--------------hhHHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCChHHHHHH
Q 020174 186 ILA---FATIPPTVNQVEMNPAW--------------QQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQI 248 (330)
Q Consensus 186 ~~~---~~~~~~~~~q~~~~~~~--------------~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~l 248 (330)
.++ ..+.+...+-.+.|... .-.+.+.+++++|..+.. +.-.. .....+.+.++
T Consensus 72 ~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~-~~~~~--------~~~~~~~~~~~ 142 (237)
T PF00682_consen 72 AVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAF-GCEDA--------SRTDPEELLEL 142 (237)
T ss_dssp HHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEE-EETTT--------GGSSHHHHHHH
T ss_pred HHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEe-Ccccc--------ccccHHHHHHH
Confidence 443 34444444445555521 125678999999999933 22221 11234455554
Q ss_pred HHHhCCCHHHHHHHHHHhcC--CEEe---eCCCCHHHHHHhhcccc
Q 020174 249 AAAHGKTVAQVCLRWIIEQG--ATAA---VKSFNKERLKENLEIFD 289 (330)
Q Consensus 249 a~~~~~s~~qlal~~~l~~~--~~~i---~g~~~~~~l~~nl~~~~ 289 (330)
++.. ..+ | ...+ .|.-+|.++.+-++.+.
T Consensus 143 ~~~~--------~~~----g~~~i~l~Dt~G~~~P~~v~~lv~~~~ 176 (237)
T PF00682_consen 143 AEAL--------AEA----GADIIYLADTVGIMTPEDVAELVRALR 176 (237)
T ss_dssp HHHH--------HHH----T-SEEEEEETTS-S-HHHHHHHHHHHH
T ss_pred HHHH--------HHc----CCeEEEeeCccCCcCHHHHHHHHHHHH
Confidence 4431 111 3 2333 47778888888776654
No 84
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=43.63 E-value=2.7e+02 Score=25.72 Aligned_cols=128 Identities=17% Similarity=0.227 Sum_probs=65.9
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHh
Q 020174 40 IDESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLK 116 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~ 116 (330)
.+.+++.++++.+.+.|++.|.-.- | ...-+-+.++..-+.+ .-.++.|+|.... +.+ .-..|.
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~~i~~~~---~~~~i~itTNG~l-------l~~-~~~~L~ 115 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIAALAALP---GIRDLALTTNGYL-------LAR-RAAALK 115 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHHHHHhcC---CCceEEEEcCchh-------HHH-HHHHHH
Confidence 4567888899888899998765432 3 1111233444321111 1235777766311 112 223455
Q ss_pred hcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCC----cceEecCCCCHHHHHHHHHhC
Q 020174 117 TLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL----TKSIGVSNFSPKKIETILAFA 190 (330)
Q Consensus 117 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk----Ir~iGvs~~~~~~l~~~~~~~ 190 (330)
..|++.+- +-+|..+...-.. .. ....++.++++++.+++.|. |..+.+...+.+++..+.+..
T Consensus 116 ~agl~~i~-ISlds~~~e~~~~-----i~----~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~ 183 (331)
T PRK00164 116 DAGLDRVN-VSLDSLDPERFKA-----IT----GRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWA 183 (331)
T ss_pred HcCCCEEE-EEeccCCHHHhcc-----CC----CCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHH
Confidence 55655432 3344443211000 00 11347889999999999885 334444455556666655543
No 85
>PRK07945 hypothetical protein; Provisional
Probab=43.36 E-value=2.8e+02 Score=25.93 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHcCCCeEeCCCC
Q 020174 42 ESAMKSAVLESIKLGYRHFDTASL 65 (330)
Q Consensus 42 ~~~~~~~l~~A~~~Gi~~~DtA~~ 65 (330)
.....+++.+|.+.|+..+=.+++
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH 133 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDH 133 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCC
Confidence 344789999999999998755555
No 86
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=42.67 E-value=1.6e+02 Score=26.97 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=54.9
Q ss_pred hhhhHHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCChHHHHHHHHHhCC------CHHHHHHHHHHhcC-CEEeeCCC
Q 020174 204 AWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGK------TVAQVCLRWIIEQG-ATAAVKSF 276 (330)
Q Consensus 204 ~~~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~-~~~i~g~~ 276 (330)
-.+|..+.+++.+-++-++.-++-.+ ...+|.++|+++|. ++.++=..|..... +.+-.|++
T Consensus 200 ~nRQ~Avk~la~~~Dl~iVVG~~nSS-----------Ns~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAS 268 (294)
T COG0761 200 QNRQDAVKELAPEVDLVIVVGSKNSS-----------NSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGAS 268 (294)
T ss_pred hhHHHHHHHHhhcCCEEEEECCCCCc-----------cHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCC
Confidence 34567788888888887777444433 45789999999986 67888889998866 66668999
Q ss_pred CHHHHHHhh
Q 020174 277 NKERLKENL 285 (330)
Q Consensus 277 ~~~~l~~nl 285 (330)
+|+-|-+++
T Consensus 269 tPd~lV~~V 277 (294)
T COG0761 269 TPDWLVQEV 277 (294)
T ss_pred CCHHHHHHH
Confidence 999887765
No 87
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=42.21 E-value=37 Score=23.33 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 020174 244 ALKQIAAAHGKTVAQVCLRWIIE 266 (330)
Q Consensus 244 ~l~~la~~~~~s~~qlal~~~l~ 266 (330)
.+.+||+++|+++.++|..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 46789999999999999999763
No 88
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=41.85 E-value=3.2e+02 Score=26.19 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhh---HHHHHHHHhcCCeEEEeccCCc
Q 020174 156 GVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ---RKLVEFCKSKSIIVTAFSPLGA 229 (330)
Q Consensus 156 ~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~via~~~l~~ 229 (330)
..+..+..+.+.+.++.+-+...+.+.++++++. ..+.+++..+-|+...- +++.++|+++|+.++.=.+++.
T Consensus 111 ~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 111 GSWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred HHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 4555555555555566666665567777776642 33455565566664332 6789999999999988776653
No 89
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=41.55 E-value=1.3e+02 Score=23.64 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEec
Q 020174 154 YNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFS 225 (330)
Q Consensus 154 ~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~ 225 (330)
.+.+...+....+.|+|. .| ..+..++++.+....+++--..+|..--..+-..|.++||+++-..
T Consensus 12 ~~k~l~~l~~a~~~~ki~-~G-----~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~ 77 (116)
T COG1358 12 EQKALSLLGKASRAGKLK-KG-----TNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVG 77 (116)
T ss_pred HHHHHHHHHHHHhcCCch-hh-----HHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeC
Confidence 456778888888999776 33 4677788888777777776677766555778899999999987643
No 90
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=41.39 E-value=3e+02 Score=25.65 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=84.4
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCC----------CCcC-----CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCCh
Q 020174 40 IDESAMKSAVLESIKLGYRHFDTA----------SLYG-----TERALGEAIAEALKLGLVASREELFITTKLWCSDAHR 104 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg-----se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~ 104 (330)
.+++...+.-..+-+.|+..||-- ..+| +.+.+.+.+++.-+.. . ++-|+.|+.....+.
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av---~--~iPVTVKiRlG~d~~ 150 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAV---G--DIPVTVKIRLGWDDD 150 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhh---C--CCCeEEEEecccCcc
Confidence 567777778788889999999853 3355 4677888887753221 2 577888885443222
Q ss_pred hhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCC-cceEecCC-CCHHH
Q 020174 105 DLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL-TKSIGVSN-FSPKK 182 (330)
Q Consensus 105 ~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk-Ir~iGvs~-~~~~~ 182 (330)
+.....+.+.++.-| +|.+.+|.-....... -..-|+.+.++++.=. |--||=.+ ++.+.
T Consensus 151 ~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~---------------~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~ 212 (323)
T COG0042 151 DILALEIARILEDAG---ADALTVHGRTRAQGYL---------------GPADWDYIKELKEAVPSIPVIANGDIKSLED 212 (323)
T ss_pred cccHHHHHHHHHhcC---CCEEEEecccHHhcCC---------------CccCHHHHHHHHHhCCCCeEEeCCCcCCHHH
Confidence 334455677777777 5889999875443321 1134677777777666 66666554 56777
Q ss_pred HHHHHHhCCCC
Q 020174 183 IETILAFATIP 193 (330)
Q Consensus 183 l~~~~~~~~~~ 193 (330)
..+.++..+.+
T Consensus 213 a~~~l~~tg~D 223 (323)
T COG0042 213 AKEMLEYTGAD 223 (323)
T ss_pred HHHHHHhhCCC
Confidence 77777775433
No 91
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=41.14 E-value=48 Score=29.45 Aligned_cols=73 Identities=18% Similarity=0.280 Sum_probs=44.0
Q ss_pred CCCCCcccCccceeccc---cCC----ChhHHHHHHHHH----HHcCCCeEeCCC--CcC---CHHHHHHHHH---HHHh
Q 020174 21 SASGHRKMPVIGLGSAV---DNI----DESAMKSAVLES----IKLGYRHFDTAS--LYG---TERALGEAIA---EALK 81 (330)
Q Consensus 21 ~t~g~~~vs~lglG~~~---~~~----~~~~~~~~l~~A----~~~Gi~~~DtA~--~Yg---se~~lG~~l~---~~~~ 81 (330)
.| | +.+|.++|.+.+ +|. .++++..++.+| .+.|||.|--|- .|- +++...+++. ....
T Consensus 65 et-g-v~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~ 142 (287)
T COG3623 65 ET-G-VRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVE 142 (287)
T ss_pred Hh-C-CCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHH
Confidence 35 8 999999999874 331 233445555554 578999998883 232 5554444443 3221
Q ss_pred cCCCCCCCceEEEeecC
Q 020174 82 LGLVASREELFITTKLW 98 (330)
Q Consensus 82 ~g~~~~R~~v~I~tK~~ 98 (330)
.. .+.+|.++.-+.
T Consensus 143 lA---~~aqV~lAvEiM 156 (287)
T COG3623 143 LA---ARAQVMLAVEIM 156 (287)
T ss_pred HH---HhhccEEEeeec
Confidence 11 567788877663
No 92
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=41.08 E-value=3e+02 Score=27.48 Aligned_cols=142 Identities=9% Similarity=0.059 Sum_probs=77.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCC
Q 020174 66 YGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIP 145 (330)
Q Consensus 66 Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~ 145 (330)
+|+++.+-++|++..+.- +.+-++|.+-. .++-|-..++...++++.+.++++.++.|.......
T Consensus 67 ~G~~~~L~~aI~~~~~~~---~P~~I~V~sTC-----~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~------- 131 (511)
T TIGR01278 67 RGSQTRLVDTVRRVDDRF---KPDLIVVTPSC-----TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKEN------- 131 (511)
T ss_pred cchHHHHHHHHHHHHHhc---CCCEEEEeCCC-----hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchh-------
Confidence 788888888888775432 33445555443 234444455566666665568899999986533200
Q ss_pred ccccccccHHHHHHHHHH-H----------HHcCCcceEecCCC------CHHHHHHHHHhCCCCceeeccc-c------
Q 020174 146 EEDLVSLDYNGVWEAMEE-C----------QRHGLTKSIGVSNF------SPKKIETILAFATIPPTVNQVE-M------ 201 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~L~~-l----------~~~GkIr~iGvs~~------~~~~l~~~~~~~~~~~~~~q~~-~------ 201 (330)
...+.+++++-+ + .++++|.-||.++. +...+.++++..++.+.++-.. -
T Consensus 132 ------~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~ 205 (511)
T TIGR01278 132 ------QAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLA 205 (511)
T ss_pred ------HHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHH
Confidence 001222222221 1 13456888998763 4566788888776655433111 1
Q ss_pred -------Chhhhh---HHHHHHH-HhcCCeEEEeccCC
Q 020174 202 -------NPAWQQ---RKLVEFC-KSKSIIVTAFSPLG 228 (330)
Q Consensus 202 -------~~~~~~---~~~l~~~-~~~gi~via~~~l~ 228 (330)
|+.... ..+.++. ++.|++++...|++
T Consensus 206 ~l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 206 RLPAAWLNICPYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred hcccCcEEEEechHHHHHHHHHHHHHhCCCcccccccC
Confidence 111011 1233333 45599998777775
No 93
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=40.90 E-value=1.8e+02 Score=25.92 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=56.3
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCcCCHHHHH-----------------HHHHHHHhcCCCCCCCceEEEeecCCCCC
Q 020174 40 IDESAMKSAVLESIKLGYRHFDTASLYGTERALG-----------------EAIAEALKLGLVASREELFITTKLWCSDA 102 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG-----------------~~l~~~~~~g~~~~R~~v~I~tK~~~~~~ 102 (330)
.+.++..++.+++-+.||.+|=|...-.+-..+- ..|+..-+ ....++|+|=. .
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~-----tgkPvIlSTG~----s 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAK-----TGKPVILSTGM----S 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT-----T-S-EEEE-TT-----
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHH-----hCCcEEEECCC----C
Confidence 5778889999999999999997664322111110 01121111 23346666542 2
Q ss_pred ChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHH
Q 020174 103 HRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPK 181 (330)
Q Consensus 103 ~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~ 181 (330)
+-+.|.++++-..+.- .-++.++|....+.. ..++ --++.+..|++.=- --||+|.|+..
T Consensus 124 tl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~--------~~e~-------~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 124 TLEEIERAVEVLREAG---NEDLVLLHCVSSYPT--------PPED-------VNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp -HHHHHHHHHHHHHHC---T--EEEEEE-SSSS----------GGG---------TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred CHHHHHHHHHHHHhcC---CCCEEEEecCCCCCC--------ChHH-------cChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 3456666665553333 468999999865432 2222 23455556664433 46899999854
No 94
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=40.66 E-value=2.8e+02 Score=25.13 Aligned_cols=165 Identities=11% Similarity=0.037 Sum_probs=87.6
Q ss_pred CChhHHHHHHHHHHHcCCCeEeC----------CCCcC-CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHH
Q 020174 40 IDESAMKSAVLESIKLGYRHFDT----------ASLYG-TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVV 108 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~Dt----------A~~Yg-se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~ 108 (330)
.+.++..+..+.+.+.|+..||. ...|+ +.+.+.+.++... ..-++-|..|+.+.. +.+
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr------~~~~~Pv~vKl~~~~---~~~- 168 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVK------KATDVPVIVKLTPNV---TDI- 168 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHH------hccCCCEEEEeCCCc---hhH-
Confidence 35677778888888899999987 23454 6667777777651 111567888986432 222
Q ss_pred HHHHHHHhhcCCCccceEEe-ecC--CCCCCCccccCCCCcccc-ccccHHHHHHHHHHHHHcCCcceEecCCC-CHHHH
Q 020174 109 PALKKSLKTLQIEYVDLYLI-HWP--MSAKPSEKLRNDIPEEDL-VSLDYNGVWEAMEECQRHGLTKSIGVSNF-SPKKI 183 (330)
Q Consensus 109 ~~le~sL~~Lg~d~iDl~~l-H~p--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~l~~~GkIr~iGvs~~-~~~~l 183 (330)
..+-+.++..|.|.+++.-. +.. +.... .... ....... ......-.++.+.++++.=.|.-||+... +++.+
T Consensus 169 ~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~-~~~~-~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da 246 (296)
T cd04740 169 VEIARAAEEAGADGLTLINTLKGMAIDIETR-KPIL-GNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDA 246 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccccccccC-ceee-cCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 23345677888777655311 000 00000 0000 0000000 00111235667777777667888998886 57888
Q ss_pred HHHHHhCCCCceeecccc----Chhhhh---HHHHHHHHhcCC
Q 020174 184 ETILAFATIPPTVNQVEM----NPAWQQ---RKLVEFCKSKSI 219 (330)
Q Consensus 184 ~~~~~~~~~~~~~~q~~~----~~~~~~---~~~l~~~~~~gi 219 (330)
.+++..+ . +.+|+-- ++.... +++-++.+++|.
T Consensus 247 ~~~l~~G-A--d~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 247 LEFLMAG-A--SAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHcC-C--CEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 8888754 2 3444332 222111 455566666653
No 95
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=39.50 E-value=4.8e+02 Score=27.48 Aligned_cols=115 Identities=10% Similarity=0.030 Sum_probs=56.0
Q ss_pred CceEEEeecCCCCCC-----hhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHH
Q 020174 89 EELFITTKLWCSDAH-----RDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEE 163 (330)
Q Consensus 89 ~~v~I~tK~~~~~~~-----~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 163 (330)
+++-|..|+...+.. .+... .+-+.|+..|+|+|| +|......... + .... ... .....+
T Consensus 617 ~~~~v~~ri~~~~~~~~g~~~~~~~-~~~~~l~~~g~d~i~---vs~g~~~~~~~----~-~~~~---~~~---~~~~~~ 681 (765)
T PRK08255 617 AEKPMSVRISAHDWVEGGNTPDDAV-EIARAFKAAGADLID---VSSGQVSKDEK----P-VYGR---MYQ---TPFADR 681 (765)
T ss_pred CCCeeEEEEccccccCCCCCHHHHH-HHHHHHHhcCCcEEE---eCCCCCCcCCC----C-CcCc---ccc---HHHHHH
Confidence 467888998654322 22222 344557777865555 55432111000 0 0000 000 122345
Q ss_pred HHHcCCcceEecCCC-CHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCe
Q 020174 164 CQRHGLTKSIGVSNF-SPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSII 220 (330)
Q Consensus 164 l~~~GkIr~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~ 220 (330)
+|+.=+|--+++.+. +++..+++++.+..+.+.+ -=..+....=+...+++.|+.
T Consensus 682 ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~--gR~~l~dP~~~~~~~~~~~~~ 737 (765)
T PRK08255 682 IRNEAGIATIAVGAISEADHVNSIIAAGRADLCAL--ARPHLADPAWTLHEAAEIGYR 737 (765)
T ss_pred HHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeE--cHHHHhCccHHHHHHHHcCCC
Confidence 666556777777776 5777888888776544332 111111112244556666665
No 96
>PRK07094 biotin synthase; Provisional
Probab=39.39 E-value=3.1e+02 Score=25.21 Aligned_cols=120 Identities=13% Similarity=0.147 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHHHHcCCcceEecCC-----CCHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEeccC
Q 020174 153 DYNGVWEAMEECQRHGLTKSIGVSN-----FSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPL 227 (330)
Q Consensus 153 ~~~~~~~~L~~l~~~GkIr~iGvs~-----~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l 227 (330)
+.+++.+.++.+++.| ++.+.++. +..+.+.++++...-.+. +.+.++......+.+...++.|+..+..+.=
T Consensus 71 s~eei~~~~~~~~~~g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glE 148 (323)
T PRK07094 71 SPEEILECAKKAYELG-YRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAITLSLGERSYEEYKAWKEAGADRYLLRHE 148 (323)
T ss_pred CHHHHHHHHHHHHHCC-CCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEEEecCCCCHHHHHHHHHcCCCEEEeccc
Confidence 5788888888888876 56665542 245556666544321111 1223333333467788888888876653222
Q ss_pred CcCCCCCCCCCCCChHHHHHHHHHhCCCHHHH--HHHHHHhcC----CEEeeCC--CCHHHHHHhhcc
Q 020174 228 GAVGSSWGTNQVMNNEALKQIAAAHGKTVAQV--CLRWIIEQG----ATAAVKS--FNKERLKENLEI 287 (330)
Q Consensus 228 ~~~G~l~~~~~~~~~~~l~~la~~~~~s~~ql--al~~~l~~~----~~~i~g~--~~~~~l~~nl~~ 287 (330)
. ...+.+..+.+ +.+..+. +++++...| ...++|. .+.+++.+.+..
T Consensus 149 s-----------~~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~ 203 (323)
T PRK07094 149 T-----------ADKELYAKLHP--GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILF 203 (323)
T ss_pred c-----------CCHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHH
Confidence 1 12344444443 3444443 566777666 4556674 577777765544
No 97
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=39.20 E-value=2.8e+02 Score=24.65 Aligned_cols=64 Identities=9% Similarity=0.078 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCcceEecCCC-CHHHHHHHHHhCCCCceeeccccC-hhhhhHHHHHHHHhcCCeE
Q 020174 158 WEAMEECQRHGLTKSIGVSNF-SPKKIETILAFATIPPTVNQVEMN-PAWQQRKLVEFCKSKSIIV 221 (330)
Q Consensus 158 ~~~L~~l~~~GkIr~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~-~~~~~~~~l~~~~~~gi~v 221 (330)
++.+.++++.-.+.-|..... +.+.+.++++...++-+++-.-++ .-..-.++...|+++||.+
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 345556665556666655543 467888887766444433211111 1111267888999998864
No 98
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=37.57 E-value=3e+02 Score=24.59 Aligned_cols=105 Identities=10% Similarity=0.005 Sum_probs=61.5
Q ss_pred CChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHH
Q 020174 102 AHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPK 181 (330)
Q Consensus 102 ~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~ 181 (330)
.+++.+.+..++.++ -|.|+||+=. .|.. .+ ..++.-+.+..+++.-.+ -|.+-+++++
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~-~~----------------~~ee~~r~v~~i~~~~~~-piSIDT~~~~ 81 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGG-LD----------------GVSAMKWLLNLLATEPTV-PLMLDSTNWE 81 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCC-CC----------------HHHHHHHHHHHHHHhcCC-cEEeeCCcHH
Confidence 455677777766665 5999999854 1210 00 012222333333332223 3788899999
Q ss_pred HHHHHHHhCCCCceeeccccChh-hhhHHHHHHHHhcCCeEEEeccC
Q 020174 182 KIETILAFATIPPTVNQVEMNPA-WQQRKLVEFCKSKSIIVTAFSPL 227 (330)
Q Consensus 182 ~l~~~~~~~~~~~~~~q~~~~~~-~~~~~~l~~~~~~gi~via~~~l 227 (330)
.++.+++.+.-...++-+..... .....+++.++++|..++.+..-
T Consensus 82 v~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 82 VIEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred HHHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 99999987321334443332211 12356889999999999987654
No 99
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=36.50 E-value=21 Score=34.86 Aligned_cols=27 Identities=33% Similarity=0.646 Sum_probs=20.7
Q ss_pred HHHHhCCCHHHHHHHHHHhcC---CEEeeC
Q 020174 248 IAAAHGKTVAQVCLRWIIEQG---ATAAVK 274 (330)
Q Consensus 248 la~~~~~s~~qlal~~~l~~~---~~~i~g 274 (330)
++-.||.|.+.-.|+|++... .+.++|
T Consensus 112 VaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 112 VAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred EeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 344578899999999999874 566666
No 100
>PRK07534 methionine synthase I; Validated
Probab=36.49 E-value=3.7e+02 Score=25.24 Aligned_cols=210 Identities=14% Similarity=0.112 Sum_probs=116.5
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCcC-C---------HHHH----HHHHH---HHHhcCCCCCCCceEEEeecCCCC--
Q 020174 41 DESAMKSAVLESIKLGYRHFDTASLYG-T---------ERAL----GEAIA---EALKLGLVASREELFITTKLWCSD-- 101 (330)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-s---------e~~l----G~~l~---~~~~~g~~~~R~~v~I~tK~~~~~-- 101 (330)
.++...++-+..+++|-++|=|. .|+ | ++.+ -.+++ +.. +. ...+++|+.-+++..
T Consensus 43 ~Pe~V~~vH~~Yl~AGAdiI~Tn-Ty~as~~~l~~~~~~~~~~~l~~~av~lAr~a~-~~---~~~~~~VaGsIGP~g~~ 117 (336)
T PRK07534 43 HPDNITALHQGFVDAGSDIILTN-SFGGTAARLKLHDAQDRVHELNRAAAEIAREVA-DK---AGRKVIVAGSVGPTGEI 117 (336)
T ss_pred CHHHHHHHHHHHHHhcCCEEEec-CcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHH-Hh---cCCccEEEEecCCCccc
Confidence 45556666666789999999866 454 3 2111 11121 111 00 123588888886531
Q ss_pred ------CChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEec
Q 020174 102 ------AHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGV 175 (330)
Q Consensus 102 ------~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGv 175 (330)
.+.+.+.......++.|--.-+|++++-... +..++..+++.+++.++=-.+.+
T Consensus 118 l~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~p--------------------~l~E~~a~~~~~~~~~~Pv~vSf 177 (336)
T PRK07534 118 MEPMGALTHALAVEAFHEQAEGLKAGGADVLWVETIS--------------------APEEIRAAAEAAKLAGMPWCGTM 177 (336)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccC--------------------CHHHHHHHHHHHHHcCCeEEEEE
Confidence 2455677777777777744559999998652 26677777777877776444555
Q ss_pred CCC---------CHHHHHHHHHhCCCCceeeccccCh-hhh-hHHHHHHHHhc-CCeEEEeccCCcCCCCCCCCCCCChH
Q 020174 176 SNF---------SPKKIETILAFATIPPTVNQVEMNP-AWQ-QRKLVEFCKSK-SIIVTAFSPLGAVGSSWGTNQVMNNE 243 (330)
Q Consensus 176 s~~---------~~~~l~~~~~~~~~~~~~~q~~~~~-~~~-~~~~l~~~~~~-gi~via~~~l~~~G~l~~~~~~~~~~ 243 (330)
+.. +...+...++.....++++-+|+.. ... -..++...... .+.+++|-.- |.. .....
T Consensus 178 t~~~~g~l~~G~~~~~~~~~~~~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPNa---G~p----~~~~~- 249 (336)
T PRK07534 178 SFDTAGRTMMGLTPADLADLVEKLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKGNA---GIP----KYVDG- 249 (336)
T ss_pred EECCCCeeCCCCcHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEcCC---CCc----ccCCC-
Confidence 432 2333334444333345788888875 322 13444444433 5666666543 221 00000
Q ss_pred HHHHHHHHhCCC---HHHHHHHHHHhcCCEEeeCC--CCHHHHHHhhcccc
Q 020174 244 ALKQIAAAHGKT---VAQVCLRWIIEQGATAAVKS--FNKERLKENLEIFD 289 (330)
Q Consensus 244 ~l~~la~~~~~s---~~qlal~~~l~~~~~~i~g~--~~~~~l~~nl~~~~ 289 (330)
.. .+..+ .++.+-.| +..|+.+|=|+ ++|+|+++..+.++
T Consensus 250 ~~-----~~~~~p~~~~~~~~~~-~~~Ga~iIGGCCGTtP~hI~~la~~l~ 294 (336)
T PRK07534 250 HI-----HYDGTPELMAEYAVLA-RDAGARIIGGCCGTMPEHLAAMRAALD 294 (336)
T ss_pred cc-----ccCCCHHHHHHHHHHH-HHcCCcEEeeecCCCHHHHHHHHHHHc
Confidence 00 11122 35566677 45576666444 89999998777664
No 101
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=36.43 E-value=1.3e+02 Score=26.16 Aligned_cols=73 Identities=11% Similarity=0.165 Sum_probs=48.5
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCcC----CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHH
Q 020174 40 IDESAMKSAVLESIKLGYRHFDTASLYG----TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSL 115 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg----se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL 115 (330)
.++++.....+.+.+.|..++=|+..|+ +.+-+ +.+++.+ +++ +-.|....-.+.+...+-++.--
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv-~~m~~~v-------~~~--v~IKaaGGirt~~~a~~~i~aGa 198 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDV-RLMRNTV-------GDT--IGVKASGGVRTAEDAIAMIEAGA 198 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHH-HHHHHHh-------ccC--CeEEEeCCCCCHHHHHHHHHHhh
Confidence 3456777888999999999999998886 22211 2333331 222 34454333336788888888888
Q ss_pred hhcCCCc
Q 020174 116 KTLQIEY 122 (330)
Q Consensus 116 ~~Lg~d~ 122 (330)
.|+|++.
T Consensus 199 ~riGts~ 205 (211)
T TIGR00126 199 SRIGASA 205 (211)
T ss_pred HHhCcch
Confidence 9999865
No 102
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=36.11 E-value=4.1e+02 Score=25.66 Aligned_cols=113 Identities=16% Similarity=0.183 Sum_probs=62.9
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhcCC-----CccceEEeecCCCCCCCc
Q 020174 64 SLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQI-----EYVDLYLIHWPMSAKPSE 138 (330)
Q Consensus 64 ~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~-----d~iDl~~lH~p~~~~~~~ 138 (330)
..||.++.+-++|++..+.- +.+-++|.|-... +-+-..++...++++. .-+.++.+|.|.......
T Consensus 61 ~V~Gg~~~L~~~i~~~~~~~---~p~~I~v~~tC~~-----~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~ 132 (428)
T cd01965 61 AVFGGEDNLIEALKNLLSRY---KPDVIGVLTTCLT-----ETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHE 132 (428)
T ss_pred eeECcHHHHHHHHHHHHHhc---CCCEEEEECCcch-----hhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHH
Confidence 35788888889998875542 3445666665432 2222224444444432 235688888886543210
Q ss_pred cccCCCCccccccccHHHHHHHHHHH-------HHcCCcceEecCCC---CHHHHHHHHHhCCCCceee
Q 020174 139 KLRNDIPEEDLVSLDYNGVWEAMEEC-------QRHGLTKSIGVSNF---SPKKIETILAFATIPPTVN 197 (330)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~L~~l-------~~~GkIr~iGvs~~---~~~~l~~~~~~~~~~~~~~ 197 (330)
.-.+.++++|-+. ++.++|--||-++. +.+.+.++++..++++..+
T Consensus 133 -------------~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 133 -------------TGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred -------------HHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 1123334343322 23456888876654 3677888888877665443
No 103
>PRK10799 metal-binding protein; Provisional
Probab=35.98 E-value=52 Score=29.33 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=18.5
Q ss_pred HHHHHHcCCCeEeCCCCcCCHHHHHHHHHHHH
Q 020174 49 VLESIKLGYRHFDTASLYGTERALGEAIAEAL 80 (330)
Q Consensus 49 l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~ 80 (330)
...|.+.|++++|.+ +|.+|...-+.|.+.+
T Consensus 200 ~~~A~~~gl~li~~G-H~~sE~~~~~~la~~L 230 (247)
T PRK10799 200 IHSAREQGLHFYAAG-HHATERGGIRALSEWL 230 (247)
T ss_pred HHHHHHCCCeEEEcC-chHHHHHHHHHHHHHH
Confidence 355667777777766 5666665444444443
No 104
>PLN02444 HMP-P synthase
Probab=35.67 E-value=4.8e+02 Score=26.42 Aligned_cols=146 Identities=12% Similarity=0.093 Sum_probs=86.7
Q ss_pred ceeccccCCChhHHHHHHHHHHHcCCC-eEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEe--------ec--CCC
Q 020174 32 GLGSAVDNIDESAMKSAVLESIKLGYR-HFDTASLYGTERALGEAIAEALKLGLVASREELFITT--------KL--WCS 100 (330)
Q Consensus 32 glG~~~~~~~~~~~~~~l~~A~~~Gi~-~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~t--------K~--~~~ 100 (330)
-+|+.....+.++-.+-+..|++.|-. ..|-+. .|.-..+-+++-+. ..+=|-| |+ ...
T Consensus 226 NIGtS~~~s~ie~EveK~~~A~~~GADTvMDLST-Ggdi~~iR~~Il~~---------spvPVGTVPIYqA~~~~~~~~~ 295 (642)
T PLN02444 226 NIGNSAVTSSIEEEVYKLQWATMWGADTVMDLST-GRHIHETREWILRN---------SPVPVGTVPIYQALEKVDGIAE 295 (642)
T ss_pred eecCCCCCCCHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHc---------CCCCccCccHHHHHHHhcCChh
Confidence 344444335556666778999999985 667773 35544444444321 1122222 11 123
Q ss_pred CCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCH
Q 020174 101 DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSP 180 (330)
Q Consensus 101 ~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~ 180 (330)
+.+.+.+...+++..+ +=+|.+-+|.- -..+.++.++ + |..|+-+-..
T Consensus 296 ~lt~d~~~d~ieeQae----qGVDfmTIH~G------------------------v~~~~v~~~~--~--R~tgIVSRGG 343 (642)
T PLN02444 296 NLTWEVFRETLIEQAE----QGVDYFTIHAG------------------------VLLRYIPLTA--K--RMTGIVSRGG 343 (642)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEChh------------------------hHHHHHHHHh--C--cccCceeCCc
Confidence 5667777777776665 34788899964 1344555554 3 7788887777
Q ss_pred HHHHHHHHhCCCCceeeccccChhhhh-HHHHHHHHhcCCeEEEeccC
Q 020174 181 KKIETILAFATIPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVTAFSPL 227 (330)
Q Consensus 181 ~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~via~~~l 227 (330)
.-+..++.... .-|++... .++++.|++++|.+---..|
T Consensus 344 Si~a~Wml~~~--------kENPlYe~FD~ileI~k~YDVtlSLGDGL 383 (642)
T PLN02444 344 SIHAKWCLAYH--------KENFAYEHWDDILDICNQYDIALSIGDGL 383 (642)
T ss_pred HHHHHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeeeccCCc
Confidence 77777765432 22344333 67999999999987543333
No 105
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=35.23 E-value=3.3e+02 Score=24.38 Aligned_cols=105 Identities=13% Similarity=0.131 Sum_probs=61.8
Q ss_pred ChhhHHHHHHHHHhhcCCCccceEE-eecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHH
Q 020174 103 HRDLVVPALKKSLKTLQIEYVDLYL-IHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPK 181 (330)
Q Consensus 103 ~~~~i~~~le~sL~~Lg~d~iDl~~-lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~ 181 (330)
+++.+.+..++.+ .-|.++||+=. -.+|....- +.+ ...+.+...++.+++.-.+ -+.+-+++++
T Consensus 21 ~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i--------~~~----~E~~rl~~~v~~~~~~~~~-plsiDT~~~~ 86 (257)
T TIGR01496 21 SVDKAVAHAERML-EEGADIIDVGGESTRPGADRV--------SPE----EELNRVVPVIKALRDQPDV-PISVDTYRAE 86 (257)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCC--------CHH----HHHHHHHHHHHHHHhcCCC-eEEEeCCCHH
Confidence 4455555554443 55889999931 112221100 000 0122355666677766233 3888899999
Q ss_pred HHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEecc
Q 020174 182 KIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSP 226 (330)
Q Consensus 182 ~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~ 226 (330)
.++.+++.+ . ..++-+.. .. ..++++.++++|..++.+..
T Consensus 87 vi~~al~~G-~-~iINsis~--~~-~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 87 VARAALEAG-A-DIINDVSG--GQ-DPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred HHHHHHHcC-C-CEEEECCC--CC-CchhHHHHHHcCCcEEEEeC
Confidence 999999874 2 23443322 21 46788999999999999654
No 106
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=35.21 E-value=3.9e+02 Score=25.16 Aligned_cols=145 Identities=16% Similarity=0.140 Sum_probs=85.7
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhcCC
Q 020174 41 DESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQI 120 (330)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~ 120 (330)
+.++..+.+..+.+.|++.|=.=- .+. =+++++.+ .+++.|..-.. ...+.+.. .+-++.|.
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv----~~~-v~avre~~-------G~~~~l~vDaN-~~w~~~~A----~~~~~~l~- 187 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL----PKL-FEAVREKF-------GFEFHLLHDVH-HRLTPNQA----ARFGKDVE- 187 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH----HHH-HHHHHhcc-------CCCceEEEECC-CCCCHHHH----HHHHHHhh-
Confidence 345555666777788998763210 111 12333321 23444444432 22333322 22333332
Q ss_pred CccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHHHhCCCCceeecc
Q 020174 121 EYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVNQV 199 (330)
Q Consensus 121 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr-~iGvs~~~~~~l~~~~~~~~~~~~~~q~ 199 (330)
.+++.++-.|-. .+-++.+.+|++...+. ..|=|.++...+..+++... ++++|+
T Consensus 188 -~~~l~~iEeP~~---------------------~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a--~di~~~ 243 (361)
T cd03322 188 -PYRLFWMEDPTP---------------------AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERL--IDYIRT 243 (361)
T ss_pred -hcCCCEEECCCC---------------------cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCC--CCEEec
Confidence 246667776642 12367788888888776 67777788888888887653 457777
Q ss_pred ccChh---hhhHHHHHHHHhcCCeEEEeccC
Q 020174 200 EMNPA---WQQRKLVEFCKSKSIIVTAFSPL 227 (330)
Q Consensus 200 ~~~~~---~~~~~~l~~~~~~gi~via~~~l 227 (330)
..... .+-.++.++|+++|+.++.++..
T Consensus 244 d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 244 TVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred CccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 66543 23368999999999999986554
No 107
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=35.18 E-value=2.9e+02 Score=24.01 Aligned_cols=92 Identities=10% Similarity=0.139 Sum_probs=50.1
Q ss_pred eeccccCCChhHHHHHHHHHHHc-----CCCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeecCC--------
Q 020174 33 LGSAVDNIDESAMKSAVLESIKL-----GYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWC-------- 99 (330)
Q Consensus 33 lG~~~~~~~~~~~~~~l~~A~~~-----Gi~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~-------- 99 (330)
=|+-..+.++++....+..|++. |+|--=.+-.-.++..+...++..- .|.-+||=|+..+
T Consensus 64 p~~L~~~~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l~------~~gl~FvDS~T~~~s~a~~~A 137 (213)
T PF04748_consen 64 PGALLTGMSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVLK------ERGLFFVDSRTTPRSVAPQVA 137 (213)
T ss_dssp TT-B-TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHHH------HTT-EEEE-S--TT-SHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHHH------HcCCEEEeCCCCcccHHHHHH
Confidence 33333336778888888888875 5542211212225777777776651 3555677455421
Q ss_pred ---------------CCCChhhHHHHHHHHHhhcCCCccceEEeec
Q 020174 100 ---------------SDAHRDLVVPALKKSLKTLQIEYVDLYLIHW 130 (330)
Q Consensus 100 ---------------~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~ 130 (330)
...+.+.|++++++..+.=+..--=+..-|-
T Consensus 138 ~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh~ 183 (213)
T PF04748_consen 138 KELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGHP 183 (213)
T ss_dssp HHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE-
T ss_pred HHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEcC
Confidence 1345788899998888777765555555563
No 108
>PRK06683 hypothetical protein; Provisional
Probab=35.07 E-value=1.8e+02 Score=21.16 Aligned_cols=58 Identities=9% Similarity=0.091 Sum_probs=37.0
Q ss_pred HHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEec
Q 020174 161 MEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFS 225 (330)
Q Consensus 161 L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~ 225 (330)
++++++.|++- +|. .+..+.++.+....+++--+.+.. ..+.+..+|+..+|+++-+.
T Consensus 3 ~~~~~~agk~v-~G~-----~~v~kaik~gkaklViiA~Da~~~-~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 3 YQKVSNAENVV-VGH-----KRTLEAIKNGIVKEVVIAEDADMR-LTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred hHHHHhCCCEE-EcH-----HHHHHHHHcCCeeEEEEECCCCHH-HHHHHHHHHHhcCCCEEEEC
Confidence 45566677654 343 556666666666655655444442 23678889999999997765
No 109
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.92 E-value=2.4e+02 Score=26.48 Aligned_cols=148 Identities=19% Similarity=0.232 Sum_probs=79.6
Q ss_pred CCcCeEEcCCCCCCcccCccceeccccCCChhHHHHHHHHHHHcCCC--eEeCCCCcCCHHHHHHHHHHHHhcCCCCCCC
Q 020174 12 INVPEVKLSSASGHRKMPVIGLGSAVDNIDESAMKSAVLESIKLGYR--HFDTASLYGTERALGEAIAEALKLGLVASRE 89 (330)
Q Consensus 12 ~~m~~~~lg~t~g~~~vs~lglG~~~~~~~~~~~~~~l~~A~~~Gi~--~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~ 89 (330)
.+|.+..++. | ..+-.+|+|. +| .-.++.|-..|.+ .||+++. ..| ++++.. | .
T Consensus 172 spLk~~g~~p--G-~~vgI~GlGG--LG------h~aVq~AKAMG~rV~vis~~~~-kke----ea~~~L---G-----A 227 (360)
T KOG0023|consen 172 SPLKRSGLGP--G-KWVGIVGLGG--LG------HMAVQYAKAMGMRVTVISTSSK-KKE----EAIKSL---G-----A 227 (360)
T ss_pred ehhHHcCCCC--C-cEEEEecCcc--cc------hHHHHHHHHhCcEEEEEeCCch-hHH----HHHHhc---C-----c
Confidence 3577888886 8 8888999987 44 2235666666665 7787752 123 344543 3 3
Q ss_pred ceEEEeecCCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCC
Q 020174 90 ELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL 169 (330)
Q Consensus 90 ~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 169 (330)
+.||.+.- + ..+.+++..++.- +.+.+--+-- ...-..+.-+|..|+
T Consensus 228 d~fv~~~~-----d-~d~~~~~~~~~dg-~~~~v~~~a~--------------------------~~~~~~~~~lk~~Gt 274 (360)
T KOG0023|consen 228 DVFVDSTE-----D-PDIMKAIMKTTDG-GIDTVSNLAE--------------------------HALEPLLGLLKVNGT 274 (360)
T ss_pred ceeEEecC-----C-HHHHHHHHHhhcC-cceeeeeccc--------------------------cchHHHHHHhhcCCE
Confidence 45554431 1 3444555555432 2222222211 123357788999999
Q ss_pred cceEecCCCCHHHHHHHHHhCCCCceeeccccChhh---hhHHHHHHHHhcCCeE
Q 020174 170 TKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAW---QQRKLVEFCKSKSIIV 221 (330)
Q Consensus 170 Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~l~~~~~~gi~v 221 (330)
+-.+|+-.. +-.+...-- -+-...+.-|..- .-+++++||.+++|..
T Consensus 275 ~V~vg~p~~-~~~~~~~~l----il~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 275 LVLVGLPEK-PLKLDTFPL----ILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred EEEEeCcCC-cccccchhh----hcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 999999864 222211100 0001111222221 1278999999998754
No 110
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=34.63 E-value=3.8e+02 Score=24.89 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCcceEecCCC-CHHHHHHHHHhCCCC
Q 020174 158 WEAMEECQRHGLTKSIGVSNF-SPKKIETILAFATIP 193 (330)
Q Consensus 158 ~~~L~~l~~~GkIr~iGvs~~-~~~~l~~~~~~~~~~ 193 (330)
+..+.++++.-.|.-++..+. +++..+++++.+..+
T Consensus 279 ~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD 315 (336)
T cd02932 279 VPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRAD 315 (336)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCC
Confidence 356667777767887887776 577788888765433
No 111
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=34.53 E-value=2.8e+02 Score=28.55 Aligned_cols=112 Identities=10% Similarity=0.073 Sum_probs=69.2
Q ss_pred HHHHHcCCcceEecCCCCHHHHHHHHHhCC--CC--ceeeccccChhhhhHHHHHHHHhcCCeEEEeccCCcCCCCCCCC
Q 020174 162 EECQRHGLTKSIGVSNFSPKKIETILAFAT--IP--PTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTN 237 (330)
Q Consensus 162 ~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~--~~--~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~ 237 (330)
+.+....++-.+.=++.+.+....+.+... ++ ...+-+.+--..+|..+.++|.+.++-++.-+.-.
T Consensus 148 ~~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~S--------- 218 (647)
T PRK00087 148 EKLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNS--------- 218 (647)
T ss_pred hhCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCC---------
Confidence 333334555555555666666555544321 11 11222223333456778899988887777622222
Q ss_pred CCCChHHHHHHHHHhCC------CHHHHHHHHHHhcC-CEEeeCCCCHHHHHHh
Q 020174 238 QVMNNEALKQIAAAHGK------TVAQVCLRWIIEQG-ATAAVKSFNKERLKEN 284 (330)
Q Consensus 238 ~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~~n 284 (330)
-.-..|.++|++.+. ++.++.-.|.-... +.+..|+++|+.+-+.
T Consensus 219 --sNt~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~ 270 (647)
T PRK00087 219 --SNTTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEE 270 (647)
T ss_pred --ccHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHH
Confidence 234689999998873 78899989987766 6777999999976554
No 112
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=34.50 E-value=3.7e+02 Score=24.74 Aligned_cols=129 Identities=14% Similarity=0.168 Sum_probs=74.1
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCC---------CCc-CC-----HHHHHHHHHHHHhcCCCCCCCceEEEeecCCC-CCC
Q 020174 40 IDESAMKSAVLESIKLGYRHFDTA---------SLY-GT-----ERALGEAIAEALKLGLVASREELFITTKLWCS-DAH 103 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA---------~~Y-gs-----e~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~-~~~ 103 (330)
.+.++..+....+.+.|+..||.- ..| |+ .+.+.+.++... .+-.+-|+.|+... +.+
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr------~~~~~pv~vKir~g~~~~ 145 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVV------DAVDIPVTVKIRIGWDDA 145 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHH------hhcCCCEEEEEEcccCCC
Confidence 467777888888888999988763 123 32 345555565531 11125577887422 111
Q ss_pred hhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCC-HHH
Q 020174 104 RDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFS-PKK 182 (330)
Q Consensus 104 ~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~-~~~ 182 (330)
...+ ..+-+.|+..|+ |.+.+|....... ..-...|+.+.++++.=.+.-||..... .+.
T Consensus 146 ~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~---------------~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~d 206 (319)
T TIGR00737 146 HINA-VEAARIAEDAGA---QAVTLHGRTRAQG---------------YSGEANWDIIARVKQAVRIPVIGNGDIFSPED 206 (319)
T ss_pred cchH-HHHHHHHHHhCC---CEEEEEccccccc---------------CCCchhHHHHHHHHHcCCCcEEEeCCCCCHHH
Confidence 1112 235556777785 5556675422110 0012346777788877678888877654 777
Q ss_pred HHHHHHhCCCC
Q 020174 183 IETILAFATIP 193 (330)
Q Consensus 183 l~~~~~~~~~~ 193 (330)
+.++++.++.+
T Consensus 207 a~~~l~~~gad 217 (319)
T TIGR00737 207 AKAMLETTGCD 217 (319)
T ss_pred HHHHHHhhCCC
Confidence 88888665433
No 113
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=34.45 E-value=3.5e+02 Score=24.35 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=54.6
Q ss_pred HHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCC-cceEecCCCCHHHHHHH
Q 020174 108 VPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL-TKSIGVSNFSPKKIETI 186 (330)
Q Consensus 108 ~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk-Ir~iGvs~~~~~~l~~~ 186 (330)
+..+-+.|.++|++.|.+-. |.. ..+.++..+.+.+.++ .+..+....+.+.++.+
T Consensus 24 k~~i~~~L~~~Gv~~IEvG~---P~~--------------------~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a 80 (262)
T cd07948 24 KIEIAKALDAFGVDYIELTS---PAA--------------------SPQSRADCEAIAKLGLKAKILTHIRCHMDDARIA 80 (262)
T ss_pred HHHHHHHHHHcCCCEEEEEC---CCC--------------------CHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHH
Confidence 34455669999988888863 422 1233445555554443 44455556677888888
Q ss_pred HHhCCCCceeeccccChhhh---------h-----HHHHHHHHhcCCeEEEec
Q 020174 187 LAFATIPPTVNQVEMNPAWQ---------Q-----RKLVEFCKSKSIIVTAFS 225 (330)
Q Consensus 187 ~~~~~~~~~~~q~~~~~~~~---------~-----~~~l~~~~~~gi~via~~ 225 (330)
.+.+ ++.+.+-++.|.... + .+++.+++++|+.|...-
T Consensus 81 ~~~g-~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 81 VETG-VDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred HHcC-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 7753 343333233333211 1 356788999998776544
No 114
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=34.28 E-value=4.3e+02 Score=25.38 Aligned_cols=140 Identities=19% Similarity=0.203 Sum_probs=85.6
Q ss_pred CChhHHHHHHHHHHHcCC-CeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEee--------cC--CCCCChhhHH
Q 020174 40 IDESAMKSAVLESIKLGY-RHFDTASLYGTERALGEAIAEALKLGLVASREELFITTK--------LW--CSDAHRDLVV 108 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi-~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK--------~~--~~~~~~~~i~ 108 (330)
.+-++-.+-+..|.+.|. +..|-+. .|.-..+-+++-+. .++=|.|= .. ..+.+.+.+.
T Consensus 75 ~~i~~EveK~~~A~~~GADtvMDLSt-Ggdl~eiR~~ii~~---------s~vPvGTVPIYqA~~~~~~~~~~~t~d~~~ 144 (432)
T COG0422 75 SDIDEEVEKAVWAIKWGADTVMDLST-GGDLHEIREWIIRN---------SPVPVGTVPIYQALEEVNGKVEDLTEDDFF 144 (432)
T ss_pred CCHHHHHHHHHHHHHhCcceeEeccc-CCCHHHHHHHHHhc---------CCCCcCCchHHHHHHHHhcchhhCCHHHHH
Confidence 455555667789999997 4668774 36544444444321 11112111 01 2356667777
Q ss_pred HHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHH
Q 020174 109 PALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILA 188 (330)
Q Consensus 109 ~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~ 188 (330)
..+++..+ +-+|.+.+|.- -.++.++.+++.|++ .|+-+-...-+..++-
T Consensus 145 ~~v~~qa~----~GVdfmTIHaG------------------------V~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml 194 (432)
T COG0422 145 DTVEKQAE----QGVDFMTIHAG------------------------VLLEYVPRTKRSGRV--TGIVSRGGSIMAAWML 194 (432)
T ss_pred HHHHHHHH----hCCcEEEeehh------------------------hhHHHHHHHHhcCce--eeeeccchHHHHHHHH
Confidence 77777665 34688899963 346788899998874 6777666666666654
Q ss_pred hCCCCceeeccccChhhhh-HHHHHHHHhcCCeEEEeccC
Q 020174 189 FATIPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVTAFSPL 227 (330)
Q Consensus 189 ~~~~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~via~~~l 227 (330)
... .-|++... .++++.|+++++.+---..+
T Consensus 195 ~~~--------~ENply~~fd~lleI~k~yDvtlSLGDgl 226 (432)
T COG0422 195 HNH--------KENPLYEHFDELLEIFKEYDVTLSLGDGL 226 (432)
T ss_pred HcC--------CcCchhhhHHHHHHHHHHhCeeeeccCCC
Confidence 322 12333333 67999999999987554444
No 115
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=34.28 E-value=4.2e+02 Score=25.23 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=54.0
Q ss_pred CCceEEEeecCCCCC-Ch----hhHHHHHHHHHhhcC-CCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHH
Q 020174 88 REELFITTKLWCSDA-HR----DLVVPALKKSLKTLQ-IEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAM 161 (330)
Q Consensus 88 R~~v~I~tK~~~~~~-~~----~~i~~~le~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 161 (330)
.++.-|.-++.+.+. .. -.-...+-+.|+..| +||+++.--++-....... ....-.....
T Consensus 214 g~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~-------------~~~~~~~~~a 280 (363)
T COG1902 214 GADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITV-------------SGPGYQVEFA 280 (363)
T ss_pred CCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccc-------------cccchhHHHH
Confidence 345567778765444 11 112345777888999 6888887766532111000 0011233445
Q ss_pred HHHHHcCCcceEecC-CCCHHHHHHHHHhCCCCc
Q 020174 162 EECQRHGLTKSIGVS-NFSPKKIETILAFATIPP 194 (330)
Q Consensus 162 ~~l~~~GkIr~iGvs-~~~~~~l~~~~~~~~~~~ 194 (330)
..+++...+--|.+. -+++++.+++++.+..+.
T Consensus 281 ~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDl 314 (363)
T COG1902 281 ARIKKAVRIPVIAVGGINDPEQAEEILASGRADL 314 (363)
T ss_pred HHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCE
Confidence 556666666666666 357888999988864443
No 116
>PRK14017 galactonate dehydratase; Provisional
Probab=34.07 E-value=4.2e+02 Score=25.16 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCcc-eEecCCCCHHHHHHHHHhCCCCceeeccccChh---hhhHHHHHHHHhcCCeEEEeccC
Q 020174 158 WEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVNQVEMNPA---WQQRKLVEFCKSKSIIVTAFSPL 227 (330)
Q Consensus 158 ~~~L~~l~~~GkIr-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~l~~~~~~gi~via~~~l 227 (330)
++.+.+|++...+. ..|=|.++...+..+++... ++++|...... .+-.++.++|+++||.++.++..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a--~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGG--VDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCC--CCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 46788888887776 66677788888998888754 45677665543 23368999999999999987653
No 117
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=34.02 E-value=2.7e+02 Score=23.78 Aligned_cols=148 Identities=11% Similarity=0.100 Sum_probs=76.6
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhcC
Q 020174 40 IDESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQ 119 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg 119 (330)
.+.+++.+.++.+++.|+...|.-. ..+..+++.. |..+.++++++.-=. ...+.+++.+......+.
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~i~~-----~~l~p~m~~i---G~~w~~gei~va~~~----~a~~~~~~~l~~l~~~~~ 76 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIELIE-----KGLMAGMGVV---GKLFEDGELFLPHVM----MSADAMLAGIKVLTPEME 76 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHHH---HHHHcCCCccHHHHH----HHHHHHHHHHHHHHHHhh
Confidence 4677889999999999988665432 2344444433 211145555543111 112344444444444443
Q ss_pred CC----ccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcC-CcceEecCCCCHHHHHHHHHhCCCCc
Q 020174 120 IE----YVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHG-LTKSIGVSNFSPKKIETILAFATIPP 194 (330)
Q Consensus 120 ~d----~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-kIr~iGvs~~~~~~l~~~~~~~~~~~ 194 (330)
.. .---+++-.+.. + .+.-+..-.-.-|+..| .+.++|... +.+.+.+.+... .|
T Consensus 77 ~~~~~~~~~~vv~~t~~g--------------d---~H~lG~~~v~~~l~~~G~~vi~LG~~v-p~e~~v~~~~~~--~p 136 (197)
T TIGR02370 77 KAVETEVLGKVVCGVAEG--------------D---VHDIGKNIVVTMLRANGFDVIDLGRDV-PIDTVVEKVKKE--KP 136 (197)
T ss_pred ccccCCCCCeEEEEeCCC--------------c---hhHHHHHHHHHHHHhCCcEEEECCCCC-CHHHHHHHHHHc--CC
Confidence 11 111222222211 0 11223344455667788 588899654 566666665554 45
Q ss_pred eeeccccChhhh---hHHHHHHHHhcCC
Q 020174 195 TVNQVEMNPAWQ---QRKLVEFCKSKSI 219 (330)
Q Consensus 195 ~~~q~~~~~~~~---~~~~l~~~~~~gi 219 (330)
+++.+.++.... -.++++.+++.|.
T Consensus 137 d~v~lS~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 137 LMLTGSALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred CEEEEccccccCHHHHHHHHHHHHHcCC
Confidence 565555543322 1678888888853
No 118
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=33.84 E-value=3.8e+02 Score=24.64 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHhC-----CCCceeeccccChhhh---h---HHHHHHHHhcCCeEEEeccCC
Q 020174 177 NFSPKKIETILAFA-----TIPPTVNQVEMNPAWQ---Q---RKLVEFCKSKSIIVTAFSPLG 228 (330)
Q Consensus 177 ~~~~~~l~~~~~~~-----~~~~~~~q~~~~~~~~---~---~~~l~~~~~~gi~via~~~l~ 228 (330)
..+.+.+++.++.. +...+++-.+.||... . .+++++|+++|+-++.=....
T Consensus 129 ~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~ 191 (363)
T PF00155_consen 129 HLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYS 191 (363)
T ss_dssp EETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTT
T ss_pred cccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeecee
Confidence 45688888877763 2234445445555432 1 567778999999888755554
No 119
>PRK13561 putative diguanylate cyclase; Provisional
Probab=33.78 E-value=4.1e+02 Score=27.06 Aligned_cols=116 Identities=12% Similarity=0.151 Sum_probs=70.5
Q ss_pred eEEEeecCCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCc
Q 020174 91 LFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLT 170 (330)
Q Consensus 91 v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkI 170 (330)
+.|+..+.+.......+...+.+.|++.+.+- .-+.+--+.... ..+.+.+...+++|++.|-
T Consensus 486 ~~~~iNlS~~~l~~~~f~~~l~~~l~~~~~~~-~~l~lEi~E~~~---------------~~~~~~~~~~~~~l~~~G~- 548 (651)
T PRK13561 486 LPLSVNLSALQLMHPNMVADMLELLTRYRIQP-GTLILEVTESRR---------------IDDPHAAVAILRPLRNAGV- 548 (651)
T ss_pred ceEEEECCHHHHCCchHHHHHHHHHHHcCCCh-HHEEEEEchhhh---------------hcCHHHHHHHHHHHHHCCC-
Confidence 44555554444445677889999999988652 444444432211 1225678889999999998
Q ss_pred ceEecCCCCH--HHHHHHHHhCCCCceeeccccChhhh-----h--HHHHHHHHhcCCeEEEe
Q 020174 171 KSIGVSNFSP--KKIETILAFATIPPTVNQVEMNPAWQ-----Q--RKLVEFCKSKSIIVTAF 224 (330)
Q Consensus 171 r~iGvs~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~~-----~--~~~l~~~~~~gi~via~ 224 (330)
.+++.+|.. ..+..+......+++++-+.-+.... . +.++..|+..|+.|+|-
T Consensus 549 -~i~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAe 610 (651)
T PRK13561 549 -RVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAE 610 (651)
T ss_pred -EEEEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 566666652 33333333223445555444322211 1 56899999999999983
No 120
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=33.60 E-value=1.9e+02 Score=26.73 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHHHhCCCCceeeccccChh---hhhHHHHHHHHhcCCeEEEeccCCc
Q 020174 156 GVWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVNQVEMNPA---WQQRKLVEFCKSKSIIVTAFSPLGA 229 (330)
Q Consensus 156 ~~~~~L~~l~~~GkIr-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~l~~~~~~gi~via~~~l~~ 229 (330)
+-++.+.++++...+. +.|=|.++...+..+++... ++++|...... ..-.++..+|+.+|+.++..+.+.+
T Consensus 210 ~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~--~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es 285 (324)
T TIGR01928 210 DDLSMLDELAKGTITPICLDESITSLDDARNLIELGN--VKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLET 285 (324)
T ss_pred hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCC--CCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcc
Confidence 3467788888877665 66777888888888887654 44666665443 2236889999999999998765543
No 121
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=33.57 E-value=75 Score=30.24 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=29.6
Q ss_pred CHHHHHHHHHhCCCCceeeccccChhhh---h---HHHHHHHHhcCCeEEEec
Q 020174 179 SPKKIETILAFATIPPTVNQVEMNPAWQ---Q---RKLVEFCKSKSIIVTAFS 225 (330)
Q Consensus 179 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~---~~~l~~~~~~gi~via~~ 225 (330)
+-+++++.+....++..+.-.+-||..+ . ..+.+.|++|||.||+-.
T Consensus 146 D~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDE 198 (388)
T COG1168 146 DFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDE 198 (388)
T ss_pred cHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeec
Confidence 4566776666655444444445555433 1 467888999999998744
No 122
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=33.34 E-value=3.6e+02 Score=25.91 Aligned_cols=122 Identities=12% Similarity=0.071 Sum_probs=72.4
Q ss_pred HHHHHHcCCcceEecCCCCHHHHH-HHHHhCCCCc-eeeccccChhhhhHHHHHHHHhcCCeE---EEeccCCcCCCCCC
Q 020174 161 MEECQRHGLTKSIGVSNFSPKKIE-TILAFATIPP-TVNQVEMNPAWQQRKLVEFCKSKSIIV---TAFSPLGAVGSSWG 235 (330)
Q Consensus 161 L~~l~~~GkIr~iGvs~~~~~~l~-~~~~~~~~~~-~~~q~~~~~~~~~~~~l~~~~~~gi~v---ia~~~l~~~G~l~~ 235 (330)
=.++.++-.||.+|+-.-+..-+. ++.+...-+. ..+.+.+++..- ..+ -|-++|..| |++.||.+ +.=|
T Consensus 163 P~~~y~~~gIRrYGFHGtSh~YVs~~aa~~L~k~~~~l~~I~~HLGNG-ASi--cAiknGkSvDTSMGfTPLeG--l~MG 237 (396)
T COG0282 163 PYELYEKYGIRRYGFHGTSHKYVSQRAAEILGKPLEDLNLITCHLGNG-ASI--CAIKNGKSVDTSMGFTPLEG--LMMG 237 (396)
T ss_pred CHHHHHhcCceecccCccchHHHHHHHHHHhCCCccccCEEEEEecCc-hhh--hhhhCCeeeccCCCCCcccc--eecc
Confidence 357788899999999887744332 3333322221 334444444321 122 345667666 77888874 2211
Q ss_pred -CCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCCEEeeCC-CCHHHHHHhhcc
Q 020174 236 -TNQVMNNEALKQIAAAHGKTVAQVCLRWIIEQGATAAVKS-FNKERLKENLEI 287 (330)
Q Consensus 236 -~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~~~i~g~-~~~~~l~~nl~~ 287 (330)
+..-+++..+.-++++.++|+.|+.---.-..|..=+.|- ++...++++.+-
T Consensus 238 TRsGdiDP~ii~~l~~~~~~s~~~i~~~LNkkSGllGlSg~ssD~R~l~~~~~~ 291 (396)
T COG0282 238 TRSGDIDPGIILYLMEQEGMSAEEIDTLLNKKSGLLGLSGLSSDMRDLEEAAAE 291 (396)
T ss_pred CCCCCCChHHHHHHHHhcCCCHHHHHHHHhhhccccccccccchHHHHHHHhcc
Confidence 1223566788889999999999976555445565555664 447777766644
No 123
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=33.29 E-value=2.2e+02 Score=22.93 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=35.3
Q ss_pred CcceEecCCCCHHH----HHHHHHhCCCCceeeccccChhhhh----------HHHHHHHHhcCCeEEEecc
Q 020174 169 LTKSIGVSNFSPKK----IETILAFATIPPTVNQVEMNPAWQQ----------RKLVEFCKSKSIIVTAFSP 226 (330)
Q Consensus 169 kIr~iGvs~~~~~~----l~~~~~~~~~~~~~~q~~~~~~~~~----------~~~l~~~~~~gi~via~~~ 226 (330)
.+...|++..+... +.+.+.....+.+++++--|-..+. ..+++.+++++..++..++
T Consensus 38 ~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~ 109 (177)
T cd01822 38 TVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGM 109 (177)
T ss_pred EEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 46677888776543 3333333344555666655543221 5688889888888877654
No 124
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=33.02 E-value=2.2e+02 Score=27.48 Aligned_cols=80 Identities=11% Similarity=0.088 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhh---HHHHHHHHhcCCeEEEeccCCcC
Q 020174 154 YNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ---RKLVEFCKSKSIIVTAFSPLGAV 230 (330)
Q Consensus 154 ~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~via~~~l~~~ 230 (330)
...+...++.+.++.-|....+-.-+...+.+.+.....+.+++..+-||...- ..+.+.|+++|+.++.-++|+.
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat- 190 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT- 190 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc-
Confidence 346778888888888888777776666565555543345677888888887653 6789999999999999999986
Q ss_pred CCCC
Q 020174 231 GSSW 234 (330)
Q Consensus 231 G~l~ 234 (330)
+.+.
T Consensus 191 P~~q 194 (396)
T COG0626 191 PVLQ 194 (396)
T ss_pred cccc
Confidence 5543
No 125
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=32.94 E-value=3.7e+02 Score=25.82 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCcc-eEecCCCCHHHHHHHHHhCCCCceeeccccChh---hhhHHHHHHHHhcCCeEEEeccC
Q 020174 157 VWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVNQVEMNPA---WQQRKLVEFCKSKSIIVTAFSPL 227 (330)
Q Consensus 157 ~~~~L~~l~~~GkIr-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~l~~~~~~gi~via~~~l 227 (330)
-++.+.+|++.-.|. +.|=|.++...+.++++... ++++|...... ..-.++..+|+.+|+.++.++..
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a--~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQL--IDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCC--CCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 357788888887766 66777788899998888754 45676655442 22368899999999999987654
No 126
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=32.62 E-value=4.3e+02 Score=24.85 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=43.9
Q ss_pred CceEEEeecCCCCC-----ChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHH
Q 020174 89 EELFITTKLWCSDA-----HRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEE 163 (330)
Q Consensus 89 ~~v~I~tK~~~~~~-----~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 163 (330)
.++-|..|+...+. +.+.. ..+-+.|+..|+|||++ |......... .. .......++.+.+
T Consensus 214 ~~~~v~~R~s~~~~~~~g~~~ee~-~~i~~~L~~~GvD~I~V---s~g~~~~~~~--~~--------~~~~~~~~~~ik~ 279 (353)
T cd04735 214 KDFILGYRFSPEEPEEPGIRMEDT-LALVDKLADKGLDYLHI---SLWDFDRKSR--RG--------RDDNQTIMELVKE 279 (353)
T ss_pred CCceEEEEECcccccCCCCCHHHH-HHHHHHHHHcCCCEEEe---ccCccccccc--cC--------CcchHHHHHHHHH
Confidence 46788888865432 22222 23445566777655554 4322111000 00 0001233344444
Q ss_pred HHHcCCcceEecCCC-CHHHHHHHHHh
Q 020174 164 CQRHGLTKSIGVSNF-SPKKIETILAF 189 (330)
Q Consensus 164 l~~~GkIr~iGvs~~-~~~~l~~~~~~ 189 (330)
..+ +++.-|++..+ +++..+++++.
T Consensus 280 ~~~-~~iPVi~~Ggi~t~e~ae~~l~~ 305 (353)
T cd04735 280 RIA-GRLPLIAVGSINTPDDALEALET 305 (353)
T ss_pred HhC-CCCCEEEECCCCCHHHHHHHHHc
Confidence 332 46777888776 68888888876
No 127
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=32.45 E-value=3.6e+02 Score=24.01 Aligned_cols=104 Identities=9% Similarity=-0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHH-HHcCCcceEecC---CCCHHHH
Q 020174 108 VPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEEC-QRHGLTKSIGVS---NFSPKKI 183 (330)
Q Consensus 108 ~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l-~~~GkIr~iGvs---~~~~~~l 183 (330)
+.++-+.|.++|++++.+-+..........- .......++.++.+ +..+..+...++ ......+
T Consensus 24 k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~------------~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i 91 (263)
T cd07943 24 VRAIARALDAAGVPLIEVGHGDGLGGSSLNY------------GFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDL 91 (263)
T ss_pred HHHHHHHHHHcCCCEEEeecCCCCCCccccc------------CCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHH
Q ss_pred HHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEe
Q 020174 184 ETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAF 224 (330)
Q Consensus 184 ~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~ 224 (330)
+.+.+. .++..-+-+..|....-.+.+++++++|..+...
T Consensus 92 ~~a~~~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 92 KMAADL-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHHHc-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
No 128
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=32.19 E-value=2.2e+02 Score=21.40 Aligned_cols=86 Identities=16% Similarity=0.175 Sum_probs=53.4
Q ss_pred HHHHHHHc-CCcceEecCCCCHHHHHHHHHhCCCC-------------ceeeccccChhhhhHHHHHHHHhcCCeEEEec
Q 020174 160 AMEECQRH-GLTKSIGVSNFSPKKIETILAFATIP-------------PTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFS 225 (330)
Q Consensus 160 ~L~~l~~~-GkIr~iGvs~~~~~~l~~~~~~~~~~-------------~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~ 225 (330)
.+..+.+. ..++-+|+++-+.+..+.+.+..+++ ++++-+ ..+.....+++..|-++|+.|+.=.
T Consensus 15 ~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I-~tp~~~h~~~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 15 HLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVII-ATPPSSHAEIAKKALEAGKHVLVEK 93 (120)
T ss_dssp HHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEE-ESSGGGHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEE-ecCCcchHHHHHHHHHcCCEEEEEc
Confidence 34455555 66777888888877766654443321 122211 1122234678899999999999999
Q ss_pred cCCcCCCCCCCCCCCChHHHHHHHHHhCC
Q 020174 226 PLGAVGSSWGTNQVMNNEALKQIAAAHGK 254 (330)
Q Consensus 226 ~l~~~G~l~~~~~~~~~~~l~~la~~~~~ 254 (330)
|++. .+.+..++.+++++.|.
T Consensus 94 P~~~--------~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 94 PLAL--------TLEEAEELVEAAKEKGV 114 (120)
T ss_dssp SSSS--------SHHHHHHHHHHHHHHTS
T ss_pred CCcC--------CHHHHHHHHHHHHHhCC
Confidence 9975 22334566677777664
No 129
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=32.11 E-value=3.9e+02 Score=24.24 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=34.7
Q ss_pred CCceeeccccChhhhh--HHHHHHHHhcCC-eEEEeccCCcCCCCCCCCCCCChHHHHHHHHHhCC
Q 020174 192 IPPTVNQVEMNPAWQQ--RKLVEFCKSKSI-IVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGK 254 (330)
Q Consensus 192 ~~~~~~q~~~~~~~~~--~~~l~~~~~~gi-~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~ 254 (330)
--|.+.+.-||+..+. +..++.|++.|+ +++. ..-.......+...|++||+
T Consensus 94 ~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv-----------pDLP~ee~~~~~~~~~~~gi 148 (265)
T COG0159 94 KVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV-----------PDLPPEESDELLKAAEKHGI 148 (265)
T ss_pred CCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe-----------CCCChHHHHHHHHHHHHcCC
Confidence 3467888889997664 678999999987 3322 11112234578888888875
No 130
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=31.56 E-value=3.2e+02 Score=23.15 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=27.5
Q ss_pred HHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHH
Q 020174 113 KSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKK 182 (330)
Q Consensus 113 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~ 182 (330)
+....++ +|.++||..++ .+..+.+.+......|+.+|++.+....
T Consensus 67 ~ia~~~~---~d~Vqlhg~e~---------------------~~~~~~l~~~~~~~~i~~i~~~~~~~~~ 112 (203)
T cd00405 67 EIAEELG---LDVVQLHGDES---------------------PEYCAQLRARLGLPVIKAIRVKDEEDLE 112 (203)
T ss_pred HHHHhcC---CCEEEECCCCC---------------------HHHHHHHHhhcCCcEEEEEecCChhhHH
Confidence 3344454 68899997631 1233444433345679999999865443
No 131
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=31.03 E-value=91 Score=27.08 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=38.0
Q ss_pred eeeccccChhhhhHHHHHHHHh---cCCeEEEeccCCcCCCCCCC---------------CCCCChHHHHHHHHHhCCCH
Q 020174 195 TVNQVEMNPAWQQRKLVEFCKS---KSIIVTAFSPLGAVGSSWGT---------------NQVMNNEALKQIAAAHGKTV 256 (330)
Q Consensus 195 ~~~q~~~~~~~~~~~~l~~~~~---~gi~via~~~l~~~G~l~~~---------------~~~~~~~~l~~la~~~~~s~ 256 (330)
.++.+++.++.....++.-+.+ .|=.++.|+||.-.|..+.+ +++.+.+.+.++|++.|...
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l 187 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLEL 187 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCcc
Confidence 3566666666555556555542 35568999999875666532 23444566666776666543
No 132
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=30.87 E-value=3.8e+02 Score=23.77 Aligned_cols=151 Identities=15% Similarity=0.173 Sum_probs=81.8
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCcCCHHH--HHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhc
Q 020174 41 DESAMKSAVLESIKLGYRHFDTASLYGTERA--LGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTL 118 (330)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~--lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~L 118 (330)
+.++..+.+..+.+.|++.|-.--.-..++. .=+++++. -.+++.|...... ..+.+...+- -+.|+.+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~-------~g~~~~l~vDan~-~~~~~~a~~~-~~~l~~~ 155 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA-------VGDDAELRVDANR-GWTPKQAIRA-LRALEDL 155 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHh-------cCCCCEEEEeCCC-CcCHHHHHHH-HHHHHhc
Confidence 3455666777778889887754321111221 12334432 1234455544432 2333332222 2334444
Q ss_pred CCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHHHhCCCCceee
Q 020174 119 QIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVN 197 (330)
Q Consensus 119 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr-~iGvs~~~~~~l~~~~~~~~~~~~~~ 197 (330)
+ +.++..|-.. +-++.+.++++.-.+. +.|=+.++...+.++++... ++++
T Consensus 156 ~-----i~~iEeP~~~---------------------~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~--~d~v 207 (265)
T cd03315 156 G-----LDYVEQPLPA---------------------DDLEGRAALARATDTPIMADESAFTPHDAFRELALGA--ADAV 207 (265)
T ss_pred C-----CCEEECCCCc---------------------ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCC--CCEE
Confidence 3 4445555321 1245667777776665 44445567788888776654 4466
Q ss_pred ccccChh---hhhHHHHHHHHhcCCeEEEeccCC
Q 020174 198 QVEMNPA---WQQRKLVEFCKSKSIIVTAFSPLG 228 (330)
Q Consensus 198 q~~~~~~---~~~~~~l~~~~~~gi~via~~~l~ 228 (330)
|+..... ..-.++...|+++|+.++.++.+.
T Consensus 208 ~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~ 241 (265)
T cd03315 208 NIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIE 241 (265)
T ss_pred EEecccccCHHHHHHHHHHHHHcCCcEEecCccc
Confidence 6665443 223678899999999999876654
No 133
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=30.84 E-value=3.5e+02 Score=23.35 Aligned_cols=121 Identities=14% Similarity=0.104 Sum_probs=64.2
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhcC
Q 020174 40 IDESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQ 119 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg 119 (330)
.+.++-.+++..+++.|+.++|.--....+. +....... . .+.++.++.--.....+.+.+...+++.. .+|
T Consensus 72 ~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~~-~~~~~~~~---~---~~~~iI~S~H~f~~tp~~~~l~~~~~~~~-~~g 143 (224)
T PF01487_consen 72 GSEEEYLELLERAIRLGPDYIDIELDLFPDD-LKSRLAAR---K---GGTKIILSYHDFEKTPSWEELIELLEEMQ-ELG 143 (224)
T ss_dssp S-HHHHHHHHHHHHHHTSSEEEEEGGCCHHH-HHHHHHHH---H---TTSEEEEEEEESS---THHHHHHHHHHHH-HTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccchhH-HHHHHHHh---h---CCCeEEEEeccCCCCCCHHHHHHHHHHHH-hcC
Confidence 4567788999999999999999865533222 22222211 1 45666666553332233344555554444 777
Q ss_pred CCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHH
Q 020174 120 IEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETIL 187 (330)
Q Consensus 120 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~ 187 (330)
.|.+=+.....- ..+....++.+.++++.-.+.-|+++.-....+.+++
T Consensus 144 adivKia~~~~~-------------------~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~ 192 (224)
T PF01487_consen 144 ADIVKIAVMANS-------------------PEDVLRLLRFTKEFREEPDIPVIAISMGELGRISRIL 192 (224)
T ss_dssp -SEEEEEEE-SS-------------------HHHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHHC
T ss_pred CCeEEEEeccCC-------------------HHHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHHHH
Confidence 655544443321 1123456666666666545666666654444555543
No 134
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=30.82 E-value=5.2e+02 Score=25.28 Aligned_cols=151 Identities=21% Similarity=0.247 Sum_probs=81.7
Q ss_pred ChhHHHHHHHHHHH-cCCC-eEeCCCCcCCHHHHHHHHHHHH--hcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHh
Q 020174 41 DESAMKSAVLESIK-LGYR-HFDTASLYGTERALGEAIAEAL--KLGLVASREELFITTKLWCSDAHRDLVVPALKKSLK 116 (330)
Q Consensus 41 ~~~~~~~~l~~A~~-~Gi~-~~DtA~~Ygse~~lG~~l~~~~--~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~ 116 (330)
+.+...+.+..+++ .+.. ++-..+..|. ..+-+++.+++ ..|+....++|+|++= ...+++-.++
T Consensus 105 p~~~~~~~~~~~~~~~~~~~~~~y~~~~G~-~~LR~~ia~~l~~~~g~~~~~~~IiiT~G----------~q~al~l~~~ 173 (459)
T COG1167 105 PLEALRRALARVLRNYGASLALQYGPTAGL-PELREAIAAYLLARRGISCEPEQIVITSG----------AQQALDLLLR 173 (459)
T ss_pred CHHHHHHHHHHHHhhcchhhhhcCCCCCCc-HHHHHHHHHHHHHhcCCccCcCeEEEeCC----------HHHHHHHHHH
Confidence 45556666666664 3333 2222222232 22333444332 2365434567887742 3344554444
Q ss_pred hcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCC----CCHHHHHHHHHhCCC
Q 020174 117 TLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSN----FSPKKIETILAFATI 192 (330)
Q Consensus 117 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~----~~~~~l~~~~~~~~~ 192 (330)
-|- +.=|.+.+-.|.. ..++.-++..| ++.++|.. .+++.+++.++..++
T Consensus 174 ~l~-~pGd~v~vE~PtY------------------------~~~~~~~~~~g-~~~~~vp~d~~G~~~e~le~~~~~~~~ 227 (459)
T COG1167 174 LLL-DPGDTVLVEDPTY------------------------PGALQALEALG-ARVIPVPVDEDGIDPEALEEALAQWKP 227 (459)
T ss_pred HhC-CCCCEEEEcCCCc------------------------HHHHHHHHHcC-CcEEecCCCCCCCCHHHHHHHHhhcCC
Confidence 432 3448888888742 22333344333 46677653 458888888776554
Q ss_pred Cceee----ccccChh---hhhHHHHHHHHhcCCeEEEeccCC
Q 020174 193 PPTVN----QVEMNPA---WQQRKLVEFCKSKSIIVTAFSPLG 228 (330)
Q Consensus 193 ~~~~~----q~~~~~~---~~~~~~l~~~~~~gi~via~~~l~ 228 (330)
+..++ |++.... .+.+.++++|+++++.||--.+.+
T Consensus 228 k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~ 270 (459)
T COG1167 228 KAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYG 270 (459)
T ss_pred cEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcch
Confidence 44443 2232221 234789999999999999866654
No 135
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=30.64 E-value=4.1e+02 Score=24.77 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=40.5
Q ss_pred CcCeEEcCCCCCCcccCc-------cceeccccCCChhHHHHHHHHHH-HcCCCeEeCCCCcCCHHHHHHHHHHHHhcCC
Q 020174 13 NVPEVKLSSASGHRKMPV-------IGLGSAVDNIDESAMKSAVLESI-KLGYRHFDTASLYGTERALGEAIAEALKLGL 84 (330)
Q Consensus 13 ~m~~~~lg~t~g~~~vs~-------lglG~~~~~~~~~~~~~~l~~A~-~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~g~ 84 (330)
.++...+.+ + +.+.. .||++-++ .++.+++...+ +.+.+.|=|=..--.-.-++..|+..++.|.
T Consensus 13 ~v~~~~~~~--~-~~v~~l~~~~~~~gF~A~~l----~~A~~i~~~ml~~~~~~ifL~~tg~mvsaGlr~ii~~Li~~~~ 85 (316)
T PRK02301 13 PVKQAEVRP--G-MTVGELVREYGGAGFGAGRL----AEAVDIYEEMLADDDVTKFFGLAGAMVPAGMRGIVSDLIRDGH 85 (316)
T ss_pred CCCCCCCCC--C-CcHHHHHHHHHhcCccHHHH----HHHHHHHHHHHhCCCCeEEEEcccchhHHHHHHHHHHHHHcCC
Confidence 344444544 5 55543 35555443 45677777777 5666654322111134567788888766654
Q ss_pred CCCCCceEEEeec
Q 020174 85 VASREELFITTKL 97 (330)
Q Consensus 85 ~~~R~~v~I~tK~ 97 (330)
+ +++|+|=.
T Consensus 86 V----D~iVtTga 94 (316)
T PRK02301 86 I----DVLVTTGA 94 (316)
T ss_pred e----eEEEcCCC
Confidence 2 46666654
No 136
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=30.28 E-value=4.7e+02 Score=24.58 Aligned_cols=120 Identities=12% Similarity=0.051 Sum_probs=66.0
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCcC----------------CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCC
Q 020174 40 IDESAMKSAVLESIKLGYRHFDTASLYG----------------TERALGEAIAEALKLGLVASREELFITTKLWCSDAH 103 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg----------------se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~ 103 (330)
.+.+....+.++|-+.|+-+|-|--.+. |-+..-.-|-++++. .-+.+.++|=+ .+
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~----~~kPiIlSTGm----a~ 158 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK----KGKPIILSTGM----AT 158 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh----cCCCEEEEccc----cc
Confidence 5666677888999999999986654443 111111111111111 22356666654 23
Q ss_pred hhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHH
Q 020174 104 RDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKI 183 (330)
Q Consensus 104 ~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l 183 (330)
-+.+.++++.-. +-|. .|+.+||....+.. ..+ +--+++|..|++.= ---||+|.|+..-+
T Consensus 159 ~~ei~~av~~~r-~~g~--~~i~LLhC~s~YPa--------p~e-------d~NL~~i~~l~~~F-n~~vGlSDHT~g~~ 219 (347)
T COG2089 159 IEEIEEAVAILR-ENGN--PDIALLHCTSAYPA--------PFE-------DVNLKAIPKLAEAF-NAIVGLSDHTLGIL 219 (347)
T ss_pred HHHHHHHHHHHH-hcCC--CCeEEEEecCCCCC--------CHH-------HhhHHHHHHHHHHh-CCccccccCccchh
Confidence 366666665443 3343 39999999765432 111 12234455555444 33599999997655
Q ss_pred HHH
Q 020174 184 ETI 186 (330)
Q Consensus 184 ~~~ 186 (330)
..+
T Consensus 220 a~l 222 (347)
T COG2089 220 APL 222 (347)
T ss_pred HHH
Confidence 444
No 137
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=30.17 E-value=1.7e+02 Score=25.31 Aligned_cols=96 Identities=9% Similarity=0.129 Sum_probs=60.5
Q ss_pred HhhcCCCccceEEee-cCCCCCCCccccCCCCccccccccHHHHHHHHHHHHH--cCCcceEecCCCCHHHHHHHHHhCC
Q 020174 115 LKTLQIEYVDLYLIH-WPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQR--HGLTKSIGVSNFSPKKIETILAFAT 191 (330)
Q Consensus 115 L~~Lg~d~iDl~~lH-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~--~GkIr~iGvs~~~~~~l~~~~~~~~ 191 (330)
+..-|.|+||+=.-- +|....- +. ...+..+...++.+++ .+. -+.+-+++++.++.+++. +
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v--------~~----~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g 92 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPV--------SE----EEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-G 92 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSS--------HH----HHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-T
T ss_pred HHHhcCCEEEecccccCCCCCcC--------CH----HHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-C
Confidence 455688999986332 2221100 00 1113445566677775 233 477888899999999988 5
Q ss_pred CCceeeccccChhhhhHHHHHHHHhcCCeEEEeccCC
Q 020174 192 IPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLG 228 (330)
Q Consensus 192 ~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~ 228 (330)
.++..+...+.. ..++++.++++|..++++..-+
T Consensus 93 ~~~ind~~~~~~---~~~~~~l~a~~~~~vV~m~~~~ 126 (210)
T PF00809_consen 93 ADIINDISGFED---DPEMLPLAAEYGAPVVLMHSDG 126 (210)
T ss_dssp SSEEEETTTTSS---STTHHHHHHHHTSEEEEESESS
T ss_pred cceEEecccccc---cchhhhhhhcCCCEEEEEeccc
Confidence 565555444332 4679999999999999987763
No 138
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=29.95 E-value=51 Score=26.38 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCeEEEeccCC
Q 020174 208 RKLVEFCKSKSIIVTAFSPLG 228 (330)
Q Consensus 208 ~~~l~~~~~~gi~via~~~l~ 228 (330)
.++++.|+++||.|++|-.+.
T Consensus 47 ge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeee
Confidence 689999999999999998885
No 139
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=29.82 E-value=2.5e+02 Score=21.61 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=13.2
Q ss_pred hhHHHHHHHHhcCCeEEEe
Q 020174 206 QQRKLVEFCKSKSIIVTAF 224 (330)
Q Consensus 206 ~~~~~l~~~~~~gi~via~ 224 (330)
.+.++.++|+++|+.++.=
T Consensus 90 ~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 90 ESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp --HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHHcCCEEEeC
Confidence 3467888999999988863
No 140
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=29.78 E-value=1.4e+02 Score=24.94 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHcC-CcceEecCCCC--HHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEE
Q 020174 154 YNGVWEAMEECQRHG-LTKSIGVSNFS--PKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTA 223 (330)
Q Consensus 154 ~~~~~~~L~~l~~~G-kIr~iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via 223 (330)
..+++++|.++++.| +|-.+|..+.. ...+.+++. ..+.++.|+....-...+..+++.|+.++.
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~-----~~i~~~~~~~~~e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLG-----VDIKIYPYDSEEEIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT------EEEEEEESSHHHHHHHHHHHHHTT--EEE
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhC-----CceEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 567889999998777 56677776654 455555542 345666665544336788899999998887
No 141
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=29.71 E-value=2.2e+02 Score=23.85 Aligned_cols=61 Identities=10% Similarity=0.029 Sum_probs=38.9
Q ss_pred HHHcCCcceEecCCCCHHHH----HHHHHhCCCCceeeccccChhhhh----------HHHHHHHHhcCCeEEEe
Q 020174 164 CQRHGLTKSIGVSNFSPKKI----ETILAFATIPPTVNQVEMNPAWQQ----------RKLVEFCKSKSIIVTAF 224 (330)
Q Consensus 164 l~~~GkIr~iGvs~~~~~~l----~~~~~~~~~~~~~~q~~~~~~~~~----------~~~l~~~~~~gi~via~ 224 (330)
+.+...+...|+++.+...+ .+.+.....+.+++++-.|-.... +.+++.++++|..++-.
T Consensus 40 l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 40 WQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred HhhCCCEEecCcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 34456688999999886543 222322344566777776664321 46888899888876654
No 142
>PRK11059 regulatory protein CsrD; Provisional
Probab=29.57 E-value=2.4e+02 Score=28.84 Aligned_cols=134 Identities=13% Similarity=0.056 Sum_probs=75.1
Q ss_pred ceEEEeecCCCCCChhhHHHHHHHHHhhc-CCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcC
Q 020174 90 ELFITTKLWCSDAHRDLVVPALKKSLKTL-QIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHG 168 (330)
Q Consensus 90 ~v~I~tK~~~~~~~~~~i~~~le~sL~~L-g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G 168 (330)
...++-.+......-..+...+...|... +.. .+-+.+--+.... ..+.+.+...+..|++.|
T Consensus 483 ~~~l~inls~~~l~~~~f~~~l~~~l~~~~~~~-~~~l~~Ei~E~~~---------------~~~~~~~~~~l~~L~~~G 546 (640)
T PRK11059 483 EENLSINLSVDSLLSRAFQRWLRDTLLQCPRSQ-RKRLIFELAEADV---------------CQHISRLRPVLRMLRGLG 546 (640)
T ss_pred CCeEEEEcCHHHhCChhHHHHHHHHHHhcCCCC-cceEEEEEechhh---------------hcCHHHHHHHHHHHHHCC
Confidence 33455555443333456777788888777 543 3555555443211 122577889999999999
Q ss_pred CcceEecCCCCH--HHHHHHHHhCCCCceeeccccChhh--------hh--HHHHHHHHhcCCeEEEeccCCcCCCCCCC
Q 020174 169 LTKSIGVSNFSP--KKIETILAFATIPPTVNQVEMNPAW--------QQ--RKLVEFCKSKSIIVTAFSPLGAVGSSWGT 236 (330)
Q Consensus 169 kIr~iGvs~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~--------~~--~~~l~~~~~~gi~via~~~l~~~G~l~~~ 236 (330)
- .+++..|.. ..+..+.. .+++++-+.-+... +. +.++..|+..|+.|+|-+.
T Consensus 547 ~--~iaiddfG~g~~s~~~L~~---l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viAegV---------- 611 (640)
T PRK11059 547 C--RLAVDQAGLTVVSTSYIKE---LNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFATGV---------- 611 (640)
T ss_pred C--EEEEECCCCCcccHHHHHh---CCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEEEEe----------
Confidence 7 455554431 22222211 24555544433221 11 5689999999999999422
Q ss_pred CCCCChHHHHHHHHHhCCCHHH
Q 020174 237 NQVMNNEALKQIAAAHGKTVAQ 258 (330)
Q Consensus 237 ~~~~~~~~l~~la~~~~~s~~q 258 (330)
+.++-....++.|++..|
T Consensus 612 ----Et~~~~~~l~~lGvd~~Q 629 (640)
T PRK11059 612 ----ESREEWQTLQELGVSGGQ 629 (640)
T ss_pred ----CCHHHHHHHHHhCCCeee
Confidence 233444555566665444
No 143
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=29.56 E-value=1.7e+02 Score=27.27 Aligned_cols=71 Identities=8% Similarity=0.187 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHcCCcceEecCCCCHHH-----HHHHHHhC----CCCcee----------eccccChhhhhHHHHHHHH
Q 020174 155 NGVWEAMEECQRHGLTKSIGVSNFSPKK-----IETILAFA----TIPPTV----------NQVEMNPAWQQRKLVEFCK 215 (330)
Q Consensus 155 ~~~~~~L~~l~~~GkIr~iGvs~~~~~~-----l~~~~~~~----~~~~~~----------~q~~~~~~~~~~~~l~~~~ 215 (330)
.+.++.|+++.+.++|+.+.+-.|++.+ ++++..+. +....- .|-.+. ...-+.+++.|+
T Consensus 95 ~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~A~ 173 (325)
T cd01306 95 PAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAYA-PANRSELAALAR 173 (325)
T ss_pred ccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC-HHHHHHHHHHHH
Confidence 4678999999999999999999998655 22332222 111100 000010 011156899999
Q ss_pred hcCCeEEEecc
Q 020174 216 SKSIIVTAFSP 226 (330)
Q Consensus 216 ~~gi~via~~~ 226 (330)
++|+.+..+..
T Consensus 174 ~~gl~vasH~d 184 (325)
T cd01306 174 ARGIPLASHDD 184 (325)
T ss_pred HCCCcEEEecC
Confidence 99999988863
No 144
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=29.53 E-value=3.7e+02 Score=23.22 Aligned_cols=70 Identities=13% Similarity=0.109 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCcc-eEecCCCCHHHHHHHHHhCCCCceeeccccChh---hhhHHHHHHHHhcCCeEEEeccCCc
Q 020174 158 WEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVNQVEMNPA---WQQRKLVEFCKSKSIIVTAFSPLGA 229 (330)
Q Consensus 158 ~~~L~~l~~~GkIr-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~l~~~~~~gi~via~~~l~~ 229 (330)
++.+.+|++...+. ..+=|.++...+.++++... ++++|+..+.. ..-.++..+|+++|+.++.++.+.+
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~--~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s 207 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELGA--VDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLES 207 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCC--CCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCC
Confidence 46677788887766 34455566777766766543 45666665443 2226789999999999999877653
No 145
>PLN02775 Probable dihydrodipicolinate reductase
Probab=29.25 E-value=3.4e+02 Score=24.93 Aligned_cols=72 Identities=15% Similarity=0.202 Sum_probs=52.4
Q ss_pred HHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhC
Q 020174 111 LKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFA 190 (330)
Q Consensus 111 le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~ 190 (330)
++..|..+.-+|.|++++..- .++.+.+.++.+.+.|+---+|.+.|+.+++.++.+..
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT---------------------~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~ 126 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYT---------------------LPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEES 126 (286)
T ss_pred HHHHHHHhhccCCCEEEEECC---------------------ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcC
Confidence 556665555568887777643 14678889999999999999999999999998887654
Q ss_pred CCCceeeccccChh
Q 020174 191 TIPPTVNQVEMNPA 204 (330)
Q Consensus 191 ~~~~~~~q~~~~~~ 204 (330)
.+ +.+.--|++..
T Consensus 127 ~i-~vv~apNfSiG 139 (286)
T PLN02775 127 GV-YAVIAPQMGKQ 139 (286)
T ss_pred Cc-cEEEECcccHH
Confidence 44 44555566653
No 146
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.19 E-value=1.5e+02 Score=25.65 Aligned_cols=61 Identities=10% Similarity=0.187 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCcceEecCCC-CHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEE
Q 020174 156 GVWEAMEECQRHGLTKSIGVSNF-SPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTA 223 (330)
Q Consensus 156 ~~~~~L~~l~~~GkIr~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via 223 (330)
+..+.+++++++..=-.||.-+. +.++++++++.+- .+. ++|. -..+++++|+++||.++.
T Consensus 41 ~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA-~Fi-----vSP~-~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 41 AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS-RFI-----VSPG-TTQELLAAANDSDVPLLP 102 (201)
T ss_pred cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-CEE-----ECCC-CCHHHHHHHHHcCCCEeC
Confidence 34566666665543245787764 4788888877643 322 2232 237899999999999887
No 147
>PRK03995 hypothetical protein; Provisional
Probab=28.67 E-value=3.2e+02 Score=24.82 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=48.7
Q ss_pred cCccceeccccCCChhHHHHHHHHHHHcCCCeEeCCCCcC----CHHHHHHHHHHHHhcCCCCCC-CceEEEeecCCCCC
Q 020174 28 MPVIGLGSAVDNIDESAMKSAVLESIKLGYRHFDTASLYG----TERALGEAIAEALKLGLVASR-EELFITTKLWCSDA 102 (330)
Q Consensus 28 vs~lglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg----se~~lG~~l~~~~~~g~~~~R-~~v~I~tK~~~~~~ 102 (330)
.+.||||..++. .+..+.|++.++.+=-..+.|- ++..+-+++.+. . .+ +.++|--| .
T Consensus 182 ~~~iGiGGgHYa------pr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks---~---~~~~~~~id~K-----~ 244 (267)
T PRK03995 182 KPAIGIGGGHYA------PKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKS---T---PEIDRIVIDWK-----G 244 (267)
T ss_pred CEEEEECCCCcc------HHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhc---c---CCCCEEEEecC-----C
Confidence 567888888764 3445667777776555556664 566677777653 1 22 23333333 2
Q ss_pred ChhhHHHHHHHHHhhcCCCc
Q 020174 103 HRDLVVPALKKSLKTLQIEY 122 (330)
Q Consensus 103 ~~~~i~~~le~sL~~Lg~d~ 122 (330)
.+...++.+++.|+.+|+..
T Consensus 245 ~k~~~r~~i~~~le~~gi~v 264 (267)
T PRK03995 245 VKSEDRERIIEFLEELGIEV 264 (267)
T ss_pred CCHHHHHHHHHHHHHCCCeE
Confidence 34677888889999988754
No 148
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=28.47 E-value=1.7e+02 Score=26.47 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=50.1
Q ss_pred CChhhHHHHHHHHHhhcCC-----C---------------------ccceEEeecCCCCCCCccccCCCCccccccccHH
Q 020174 102 AHRDLVVPALKKSLKTLQI-----E---------------------YVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYN 155 (330)
Q Consensus 102 ~~~~~i~~~le~sL~~Lg~-----d---------------------~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 155 (330)
.....++..++.-|+||.+ + ..+++.|..|.+.-+ +...+
T Consensus 102 m~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLD--------------PVN~e 167 (300)
T COG4152 102 MPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLD--------------PVNVE 167 (300)
T ss_pred CcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCC--------------hhhHH
Confidence 4456777777777777764 1 345666666654332 22344
Q ss_pred HHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHh
Q 020174 156 GVWEAMEECQRHGLTKSIGVSNFSPKKIETILAF 189 (330)
Q Consensus 156 ~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~ 189 (330)
-.-++..+++++|+ .|=+|+|..++.+++++.
T Consensus 168 lLk~~I~~lk~~Ga--tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 168 LLKDAIFELKEEGA--TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred HHHHHHHHHHhcCC--EEEEecchHHHHHHHhhh
Confidence 45568899999998 788999999999999876
No 149
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=28.43 E-value=2.2e+02 Score=28.57 Aligned_cols=75 Identities=23% Similarity=0.152 Sum_probs=49.0
Q ss_pred ccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceee-ccccChhhhhHHHHHHHHhcCCeEEEeccC
Q 020174 152 LDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVN-QVEMNPAWQQRKLVEFCKSKSIIVTAFSPL 227 (330)
Q Consensus 152 ~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~-q~~~~~~~~~~~~l~~~~~~gi~via~~~l 227 (330)
.+.+++.+.+.+.+++.+|+.||+-.+...++...++..+++++.+ |--.++.. .-.-++..-..|.-+-.-+|+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~-~~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSG-AIKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCc-hhHHHHHHHhcCcEEECCCcH
Confidence 5577888999999999999999999999999888888888765432 22221211 123344444445544444444
No 150
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=28.37 E-value=1.9e+02 Score=27.65 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhh---HHHHHHHHhcC-CeEEEeccCCc
Q 020174 155 NGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ---RKLVEFCKSKS-IIVTAFSPLGA 229 (330)
Q Consensus 155 ~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~g-i~via~~~l~~ 229 (330)
.++...++++....-|...=+...+.+.++.+++. ..+.++...+-||...- ..+.+.|+++| +.++.=++++.
T Consensus 105 ~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~at 182 (386)
T PF01053_consen 105 GGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFAT 182 (386)
T ss_dssp HHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTH
T ss_pred CcchhhhhhhhcccCcEEEEeCchhHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccc
Confidence 56778888766555555444445568888888765 45677788888887553 67899999999 99999999986
No 151
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=28.32 E-value=81 Score=24.41 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=23.7
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCcC
Q 020174 40 IDESAMKSAVLESIKLGYRHFDTASLYG 67 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 67 (330)
.+.....+....+++.|++.||.+..|-
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 4566678888889999999999999873
No 152
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=28.08 E-value=1.7e+02 Score=25.41 Aligned_cols=61 Identities=11% Similarity=0.223 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCCcceEecCCC-CHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEE
Q 020174 156 GVWEAMEECQRHGLTKSIGVSNF-SPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTA 223 (330)
Q Consensus 156 ~~~~~L~~l~~~GkIr~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via 223 (330)
..++.+++++++..=-.||.-+. +.++++.+++.+- ++. .+|.. ..+++++|+++|+.++.
T Consensus 45 ~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fi-----vsP~~-~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 45 VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFI-----VSPGL-TPELAKHAQDHGIPIIP 106 (204)
T ss_pred cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEE-----ECCCC-CHHHHHHHHHcCCcEEC
Confidence 35566667766543245887765 4788888877642 332 23322 46899999999998887
No 153
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=28.05 E-value=3.8e+02 Score=22.82 Aligned_cols=147 Identities=15% Similarity=0.135 Sum_probs=71.9
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhcC
Q 020174 40 IDESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQ 119 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg 119 (330)
.+..++.+++..+++.|+...|.- +..+..++++. |..+.+++++++-=. ...+.+++.+......+.
T Consensus 8 ~D~~~~~~~v~~~l~~g~~~~~i~-----~~~l~p~m~~v---G~~w~~~~i~va~e~----~as~~~~~~l~~l~~~~~ 75 (201)
T cd02070 8 GDEEETVELVKKALEAGIDPQDII-----EEGLAPGMDIV---GDKYEEGEIFVPELL----MAADAMKAGLDLLKPLLG 75 (201)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHHH---HHHHccCCeeHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 467788999999999997654432 12334444433 211144555544211 112333444444333333
Q ss_pred CCc---cceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCC-cceEecCCCCHHHHHHHHHhCCCCce
Q 020174 120 IEY---VDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL-TKSIGVSNFSPKKIETILAFATIPPT 195 (330)
Q Consensus 120 ~d~---iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk-Ir~iGvs~~~~~~l~~~~~~~~~~~~ 195 (330)
... ---+++-.+.. + .+.-+..-.-.-|+..|. +.++| .+.+.+.+.+.+... .|+
T Consensus 76 ~~~~~~~~~vl~~~~~g----d-------------~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~--~~d 135 (201)
T cd02070 76 KSKSAKKGKVVIGTVEG----D-------------IHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEH--KPD 135 (201)
T ss_pred hcCCCCCCeEEEEecCC----c-------------cchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHc--CCC
Confidence 221 11233333311 0 011223333445667784 67788 444667766665554 344
Q ss_pred eeccccChhhh---hHHHHHHHHhcC
Q 020174 196 VNQVEMNPAWQ---QRKLVEFCKSKS 218 (330)
Q Consensus 196 ~~q~~~~~~~~---~~~~l~~~~~~g 218 (330)
++.+.++.... -.++++.+++.+
T Consensus 136 ~v~lS~~~~~~~~~~~~~i~~lr~~~ 161 (201)
T cd02070 136 ILGLSALMTTTMGGMKEVIEALKEAG 161 (201)
T ss_pred EEEEeccccccHHHHHHHHHHHHHCC
Confidence 55555433222 156777777775
No 154
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=27.95 E-value=4.7e+02 Score=23.89 Aligned_cols=125 Identities=14% Similarity=0.173 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCC-CHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEeccCCcCCC
Q 020174 154 YNGVWEAMEECQRHGLTKSIGVSNF-SPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGS 232 (330)
Q Consensus 154 ~~~~~~~L~~l~~~GkIr~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~~~G~ 232 (330)
.+.....++.+++.|.--.+=++.. ..+.+..+++..+.. .+ .+......+.+.++..+++||.+.. .|... .
T Consensus 172 ~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~~--~i-~H~~~l~~~~~~~~~l~~~gi~v~~-~P~sn--~ 245 (325)
T cd01320 172 PEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGAE--RI-GHGIRAIEDPELVKRLAERNIPLEV-CPTSN--V 245 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCCc--cc-chhhccCccHHHHHHHHHcCCeEEE-CCCcc--c
Confidence 4566677888888886444433322 244455555533321 11 0111112234678899999998753 23321 1
Q ss_pred CCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCCEEeeCCCCH-----HHHHHhhccc-ccccCHHHHHHH
Q 020174 233 SWGTNQVMNNEALKQIAAAHGKTVAQVCLRWIIEQGATAAVKSFNK-----ERLKENLEIF-DWALTDDDHDKI 300 (330)
Q Consensus 233 l~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~~~i~g~~~~-----~~l~~nl~~~-~~~L~~~~~~~l 300 (330)
..+... ..+ .--++..+..|+.+.+|+.++ .-.++...+. .+.|+.+|+..+
T Consensus 246 ~l~~~~------------~~~----~~p~~~l~~~Gv~v~lgTD~~~~~~~~~~~e~~~~~~~~~l~~~el~~~ 303 (325)
T cd01320 246 QTGAVK------------SLA----EHPLRELLDAGVKVTINTDDPTVFGTYLTDEYELLAEAFGLTEEELKKL 303 (325)
T ss_pred cccccC------------Ccc----cChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 101000 001 112556677787777777543 2222322222 236777776665
No 155
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=27.81 E-value=4.2e+02 Score=23.23 Aligned_cols=112 Identities=10% Similarity=0.071 Sum_probs=72.7
Q ss_pred EeecCCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCC----
Q 020174 94 TTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL---- 169 (330)
Q Consensus 94 ~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk---- 169 (330)
++|....+.........++..-+-....+++-+++....... +..|.+...++|.+.|-
T Consensus 65 tsky~~~g~~N~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~-----------------sYnEp~tM~kdL~~~GVp~~~ 127 (235)
T COG2949 65 TSKYLAKGPPNRYYTYRIDAAIALYKAGKVNYLLLSGDNATV-----------------SYNEPRTMRKDLIAAGVPAKN 127 (235)
T ss_pred ccccccCCCccHhHHHHHHHHHHHHhcCCeeEEEEecCCCcc-----------------cccchHHHHHHHHHcCCCHHH
Confidence 455544433445677778888888888899999998754322 24577888899999996
Q ss_pred --cceEecCCCCHHHHHHHHHhCC-CCceeeccccChhhhhHHHHHHHHhcCCeEEEeccCC
Q 020174 170 --TKSIGVSNFSPKKIETILAFAT-IPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLG 228 (330)
Q Consensus 170 --Ir~iGvs~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~ 228 (330)
..+-|+++ .+.+-++.+-.+ .++.++-=+|+ .+..+=.|+.+||.-+++..-.
T Consensus 128 i~lDyAGFrT--LDSvvRA~kVF~~~~ftIItQ~FH----ceRAlfiA~~~gIdAic~~ap~ 183 (235)
T COG2949 128 IFLDYAGFRT--LDSVVRARKVFGTNDFTIITQRFH----CERALFIARQMGIDAICFAAPD 183 (235)
T ss_pred eeecccCccH--HHHHHHHHHHcCcCcEEEEecccc----cHHHHHHHHHhCCceEEecCCC
Confidence 45777775 355555554433 22322211222 2456678999999999877654
No 156
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=27.77 E-value=5.3e+02 Score=24.44 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhh---hHHHHHHHHhcCCeEEEeccCC
Q 020174 156 GVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQ---QRKLVEFCKSKSIIVTAFSPLG 228 (330)
Q Consensus 156 ~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~~l~~~~~~gi~via~~~l~ 228 (330)
..+..+..+...+.++..-+...+.+.++++++. +.+.+++..+-|+... -+++.+.|+++|+.++.=.+++
T Consensus 102 ~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~ 176 (382)
T TIGR02080 102 GTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFL 176 (382)
T ss_pred HHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCc
Confidence 3455555555555555444445567777776643 2344555556666432 2678999999999888766654
No 157
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=27.59 E-value=5.2e+02 Score=24.24 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=39.0
Q ss_pred cceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhh---HHHHHHHHhcCCeEEEeccCC
Q 020174 170 TKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ---RKLVEFCKSKSIIVTAFSPLG 228 (330)
Q Consensus 170 Ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~via~~~l~ 228 (330)
++..-+...+.+.++++++. ..+.+++..+.|+.... +++.+.|+++|+.++.=.+++
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~ 176 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFY 176 (366)
T ss_pred ceEEEECCCCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 44444544567777777643 33455666677775432 678999999999998877764
No 158
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=27.42 E-value=3.1e+02 Score=22.59 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHcCCCeEeCCCCcC---C--HHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCC-ChhhHHHHHHHHH
Q 020174 42 ESAMKSAVLESIKLGYRHFDTASLYG---T--ERALGEAIAEALKLGLVASREELFITTKLWCSDA-HRDLVVPALKKSL 115 (330)
Q Consensus 42 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg---s--e~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~-~~~~i~~~le~sL 115 (330)
.++..+..+.|.+.|...+.....|+ + ++.+-+.+++..+. -+.++-+.-+..+... +++.+.+..+ .+
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~pv~iy~~p~~~~~~~~~~~~~~-~~ 138 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA----ADGGLPLKVILETRGLKTADEIAKAAR-IA 138 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH----hcCCceEEEEEECCCCCCHHHHHHHHH-HH
Confidence 46778889999999999999765554 3 56666666655322 0113344444333222 4455544433 33
Q ss_pred hhcCCCccc
Q 020174 116 KTLQIEYVD 124 (330)
Q Consensus 116 ~~Lg~d~iD 124 (330)
+..|++.+.
T Consensus 139 ~~~g~~~iK 147 (201)
T cd00945 139 AEAGADFIK 147 (201)
T ss_pred HHhCCCEEE
Confidence 567766554
No 159
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=27.39 E-value=2.1e+02 Score=24.68 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=41.7
Q ss_pred HHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecC-CCCHHHHHHHHHhCCC
Q 020174 114 SLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVS-NFSPKKIETILAFATI 192 (330)
Q Consensus 114 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs-~~~~~~l~~~~~~~~~ 192 (330)
.+..+|.|++=+++... +.- ..+.+. .+.+.+.. .+.++.+||. |-+.+.+.++++..
T Consensus 16 ~~~~~GaD~iGfIf~~~--SpR---------------~V~~~~-a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~-- 74 (207)
T PRK13958 16 AASQLPIDAIGFIHYEK--SKR---------------HQTITQ-IKKLASAV-PNHIDKVCVVVNPDLTTIEHILSNT-- 74 (207)
T ss_pred HHHHcCCCEEEEecCCC--Ccc---------------cCCHHH-HHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhC--
Confidence 44569999988874332 110 122333 33333332 3568889996 77788888887765
Q ss_pred CceeeccccC
Q 020174 193 PPTVNQVEMN 202 (330)
Q Consensus 193 ~~~~~q~~~~ 202 (330)
.++++|++-.
T Consensus 75 ~~d~vQLHG~ 84 (207)
T PRK13958 75 SINTIQLHGT 84 (207)
T ss_pred CCCEEEECCC
Confidence 4568888753
No 160
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=27.15 E-value=3.5e+02 Score=22.08 Aligned_cols=106 Identities=14% Similarity=0.228 Sum_probs=68.3
Q ss_pred HHHHHHHH-HcCCCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhcCCCccc
Q 020174 46 KSAVLESI-KLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVD 124 (330)
Q Consensus 46 ~~~l~~A~-~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iD 124 (330)
..++.+|+ +.|+..+.+.-.=-.|+++-.++.+ .-+++..|-.. .........+-+.|+..|.+.+=
T Consensus 29 akvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~---------dv~vIgvSsl~---g~h~~l~~~lve~lre~G~~~i~ 96 (143)
T COG2185 29 AKVIARALADAGFEVINLGLFQTPEEAVRAAVEE---------DVDVIGVSSLD---GGHLTLVPGLVEALREAGVEDIL 96 (143)
T ss_pred hHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc---------CCCEEEEEecc---chHHHHHHHHHHHHHHhCCcceE
Confidence 56677787 6888988777554458888888773 34455555442 23367888899999999988443
Q ss_pred eEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHH
Q 020174 125 LYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILA 188 (330)
Q Consensus 125 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~ 188 (330)
+++-..-. .+ .+++|++.|--+.++-..--.+.+..++.
T Consensus 97 -v~~GGvip--------------------~~----d~~~l~~~G~~~if~pgt~~~~~~~~v~~ 135 (143)
T COG2185 97 -VVVGGVIP--------------------PG----DYQELKEMGVDRIFGPGTPIEEALSDLLT 135 (143)
T ss_pred -EeecCccC--------------------ch----hHHHHHHhCcceeeCCCCCHHHHHHHHHH
Confidence 23333211 12 26788889988888886543444444443
No 161
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=26.98 E-value=5.1e+02 Score=23.97 Aligned_cols=145 Identities=14% Similarity=0.056 Sum_probs=72.5
Q ss_pred ceeccccCCChhHHHHHHHHHH-HcCCCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHH
Q 020174 32 GLGSAVDNIDESAMKSAVLESI-KLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPA 110 (330)
Q Consensus 32 glG~~~~~~~~~~~~~~l~~A~-~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~ 110 (330)
||.+.++ .++.+++...+ +.+.+.|=|=..-=.-.-++..|+..++.|.+ +++|+|=.... +.+.++
T Consensus 24 gF~a~~l----~~A~~i~~~m~~~~~~~ifLt~tg~mvsaGlr~ii~~Li~~g~V----d~ivtTganl~----hD~~~~ 91 (301)
T TIGR00321 24 GFQGRRI----GEADKIWKEMCFDEEITIFMGYAGNLVPSGMREIIAYLIQHGMI----DALVTTGANLE----HDLIEA 91 (301)
T ss_pred CccHHHH----HHHHHHHHHHHhCCCCeEEEEeccccchhhHHHHHHHHHHcCCe----eEEEeCCCchH----HHHHHH
Confidence 5555554 34567777776 33344442211111345577888887766543 46666654211 122222
Q ss_pred H-----------HHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHH-HHHHHHHHcCCcceEecCCC
Q 020174 111 L-----------KKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVW-EAMEECQRHGLTKSIGVSNF 178 (330)
Q Consensus 111 l-----------e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~l~~~GkIr~iGvs~~ 178 (330)
+ +..|++.|.++|==+++..- . ....++.+ +.++++.++.+ .|
T Consensus 92 ~g~~~~g~f~~dd~~Lr~~ginRI~dv~ip~e-~-----------------y~~~E~~i~~i~~~~~~~~~-------~~ 146 (301)
T TIGR00321 92 LGPTHLGDFAVDDKKLREEGINRIGDVFVPNE-N-----------------FEVFEEWLVEIFSEMLGEQP-------II 146 (301)
T ss_pred cCcccccCCCCChHHHHHcCCCccceecCCHH-H-----------------HHHHHHHHHHHHHHHHhcCC-------Cc
Confidence 2 55566666666544444321 0 01122322 34455444333 24
Q ss_pred CHHHHH-HHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEecc
Q 020174 179 SPKKIE-TILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSP 226 (330)
Q Consensus 179 ~~~~l~-~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~ 226 (330)
++..+- ++-+. + + ..+..++.+|.++||+|++=..
T Consensus 147 s~~e~i~~lGk~--i---------~--~~e~Sil~~Ayk~~VPIf~Pa~ 182 (301)
T TIGR00321 147 TPSEFIDEIGKR--I---------N--DKRSSIRYAAYKRKIPIFCPAL 182 (301)
T ss_pred CHHHHHHHHHhh--c---------C--CccchHHHHHHHcCCCEECCCc
Confidence 555443 33221 1 1 0246799999999999987443
No 162
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=26.87 E-value=3.6e+02 Score=24.70 Aligned_cols=93 Identities=13% Similarity=0.173 Sum_probs=57.4
Q ss_pred HhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHH-----HHHHHHHHHcCCcceEecCCCCHH-------H
Q 020174 115 LKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGV-----WEAMEECQRHGLTKSIGVSNFSPK-------K 182 (330)
Q Consensus 115 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~L~~l~~~GkIr~iGvs~~~~~-------~ 182 (330)
++-+.-.++|+..+..+..... ..+. -+.+.++.++--=|++|+.+.++. .
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~-----------------~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E 117 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAI-----------------IPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEE 117 (293)
T ss_pred HhhhcccccceEEeeccccccc-----------------hHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHH
Confidence 6777888899988884110000 1111 246777888888899999988744 2
Q ss_pred HHHHHHhCCCCceeeccccChhhh-------h-HHHHHHHHhcCCeEEEeccCC
Q 020174 183 IETILAFATIPPTVNQVEMNPAWQ-------Q-RKLVEFCKSKSIIVTAFSPLG 228 (330)
Q Consensus 183 l~~~~~~~~~~~~~~q~~~~~~~~-------~-~~~l~~~~~~gi~via~~~l~ 228 (330)
+++.....+ ++++.+++..+ . ..+++.|+++|+.|+.+....
T Consensus 118 ~er~v~~~g----f~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 118 LERRVRELG----FVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred HHHHHHhcC----ceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 333333322 33333333222 2 569999999999999866554
No 163
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=26.86 E-value=5.3e+02 Score=24.11 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCC
Q 020174 159 EAMEECQRHGLTKSIGVSNFSPKKIETILAFATIP 193 (330)
Q Consensus 159 ~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~ 193 (330)
....++++.=.|--+++.+++++..+++++.+..+
T Consensus 275 ~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D 309 (338)
T cd02933 275 DFLDFLRKAFKGPLIAAGGYDAESAEAALADGKAD 309 (338)
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCC
Confidence 33444455446677777777777777777765444
No 164
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=26.77 E-value=4.3e+02 Score=23.07 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=39.9
Q ss_pred CCeEeC-CCCcC--CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCC-------CChhhHHHHHHHHHhhcCCCccceE
Q 020174 57 YRHFDT-ASLYG--TERALGEAIAEALKLGLVASREELFITTKLWCSD-------AHRDLVVPALKKSLKTLQIEYVDLY 126 (330)
Q Consensus 57 i~~~Dt-A~~Yg--se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~-------~~~~~i~~~le~sL~~Lg~d~iDl~ 126 (330)
++.++. +..|. +.+.+.++.++ ..+++..+.|+...- ...+.+.+.+-+.++.|| +++..+
T Consensus 19 F~~VEvn~TFY~~P~~~t~~~W~~~--------~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg~i 89 (230)
T PF01904_consen 19 FNTVEVNSTFYRIPSPETVARWREQ--------TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLGPI 89 (230)
T ss_dssp -SEEEE-HHCCSSS-HHHHHHHHCT--------S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEE
T ss_pred CCeEEECcccCCCCCHHHHHHHHhh--------CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcceEE
Confidence 555555 33576 78888877664 467899999985321 123455355555999999 899999
Q ss_pred EeecCCC
Q 020174 127 LIHWPMS 133 (330)
Q Consensus 127 ~lH~p~~ 133 (330)
++.-|-.
T Consensus 90 L~Q~Pps 96 (230)
T PF01904_consen 90 LFQFPPS 96 (230)
T ss_dssp EEE--TT
T ss_pred EEEcCCC
Confidence 9998853
No 165
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=26.46 E-value=2.4e+02 Score=26.57 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCcc-eEecCCCCHHHHHHHHHhCCCCceeeccccChh---hhhHHHHHHHHhcCCeEEEec
Q 020174 158 WEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVNQVEMNPA---WQQRKLVEFCKSKSIIVTAFS 225 (330)
Q Consensus 158 ~~~L~~l~~~GkIr-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~l~~~~~~gi~via~~ 225 (330)
++.+.+|++...+. +.|=+-++...+..+++... ++++|+...-. ..-..+...|+.+|+.++..+
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~--~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~ 296 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASA--ADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGT 296 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCC--CCEEEEcccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 44555555555444 44555555555555554432 23444433321 112456666666666665543
No 166
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=25.96 E-value=2.9e+02 Score=26.30 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhh--HHHHHHHHhcCCeEEEeccCCcCCCCCC
Q 020174 158 WEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ--RKLVEFCKSKSIIVTAFSPLGAVGSSWG 235 (330)
Q Consensus 158 ~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~l~~~~~~gi~via~~~l~~~G~l~~ 235 (330)
..++.+|.+.|.+.+|-.-.-..-.+..+.....-.+. --|.+...+ +.+++.|+++||.||.-+- | ..
T Consensus 12 ~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~NaG----g-~n- 82 (362)
T PF07287_consen 12 PDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNAG----G-LN- 82 (362)
T ss_pred HHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeCC----C-CC-
Confidence 45667777899999987643322122211111111111 123333222 6789999999999988531 1 10
Q ss_pred CCCCCChHHHHHHHHHhCCC
Q 020174 236 TNQVMNNEALKQIAAAHGKT 255 (330)
Q Consensus 236 ~~~~~~~~~l~~la~~~~~s 255 (330)
+ .--.+.++++++++|.+
T Consensus 83 p--~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 83 P--AGCADIVREIARELGLS 100 (362)
T ss_pred H--HHHHHHHHHHHHhcCCC
Confidence 1 11235666777776554
No 167
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.72 E-value=4.3e+02 Score=25.22 Aligned_cols=99 Identities=15% Similarity=0.098 Sum_probs=61.9
Q ss_pred eEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCC----cceEecC--CCCHHHHHHHHHhCC-C-----
Q 020174 125 LYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL----TKSIGVS--NFSPKKIETILAFAT-I----- 192 (330)
Q Consensus 125 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk----Ir~iGvs--~~~~~~l~~~~~~~~-~----- 192 (330)
.+-||.|+......-+. .+ ....++++++++.+..++.. +-|+=+. |-+.++..++.+..+ .
T Consensus 231 AiSLHA~~~e~R~~lmP--in----~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~ 304 (371)
T PRK14461 231 AISLHAPDDALRSELMP--VN----RRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGP 304 (371)
T ss_pred EEEeCCCCHHHHHHhcC--cc----cCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccC
Confidence 37789997655422111 11 12458889999988875443 2233333 344666666655433 3
Q ss_pred -CceeeccccChhhh-------h---HHHHHHHHhcCCeEEEeccCCc
Q 020174 193 -PPTVNQVEMNPAWQ-------Q---RKLVEFCKSKSIIVTAFSPLGA 229 (330)
Q Consensus 193 -~~~~~q~~~~~~~~-------~---~~~l~~~~~~gi~via~~~l~~ 229 (330)
+..++-++||+... . ....+..+++||.+......+.
T Consensus 305 l~~~VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 305 LLVHVNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred CceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 56788889998532 1 4566778999999999887763
No 168
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=25.54 E-value=6.7e+02 Score=24.82 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHHcCCcc----eEecCCCCHHHHHHHHHhCC-CCceeeccccChhhhhHHHHHHHHhcCC
Q 020174 153 DYNGVWEAMEECQRHGLTK----SIGVSNFSPKKIETILAFAT-IPPTVNQVEMNPAWQQRKLVEFCKSKSI 219 (330)
Q Consensus 153 ~~~~~~~~L~~l~~~GkIr----~iGvs~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~~~~l~~~~~~gi 219 (330)
..++..++++.+++.|..- -+|+-+.+.+.+++.++... ..+...++..-...+..++.+.+++++.
T Consensus 321 t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 321 TTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEEEEecCCCCcHHHHHHHhhcc
Confidence 4677889999999998633 25666767777766555432 3444444332222344667777777654
No 169
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=25.54 E-value=5.2e+02 Score=23.55 Aligned_cols=219 Identities=16% Similarity=0.167 Sum_probs=99.2
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCcC-C--------------HHHHHHHHHHHHh--cCCCCCCCceEEEeecCCC---
Q 020174 41 DESAMKSAVLESIKLGYRHFDTASLYG-T--------------ERALGEAIAEALK--LGLVASREELFITTKLWCS--- 100 (330)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-s--------------e~~lG~~l~~~~~--~g~~~~R~~v~I~tK~~~~--- 100 (330)
.++...++-+..+++|-+.+-|. .|+ + +++...+++-..+ .... ..++++|+--+++.
T Consensus 39 ~p~~v~~iH~~yl~AGAdiI~Tn-Ty~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~-~~~~~~VaGsiGP~ga~ 116 (305)
T PF02574_consen 39 NPELVRQIHRDYLEAGADIITTN-TYQASRERLKEYGLSDEEAEELNRAAVELAREAADEYG-SGRKVLVAGSIGPYGAY 116 (305)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEC--TT-SHHHHGGGT-GGGCHHHHHHHHHHHHHHHHTT----TT-SEEEEEEE--S--
T ss_pred CHHHHHHHHHHHHHCCCCeEEec-CCcCchhhhhhcCCcHHHHHHHHHHHHHHHHHHHhhcc-CCCccEEEEEccccccc
Confidence 45556666677789999999887 454 1 3333333332111 1100 12248888877632
Q ss_pred ----------CCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCc
Q 020174 101 ----------DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLT 170 (330)
Q Consensus 101 ----------~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkI 170 (330)
..+.+.+++...+.++.|--..+|++++-...... ....+.+++++. -++-
T Consensus 117 l~g~~y~~~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~-----------------E~~aa~~a~~~~--~~~p 177 (305)
T PF02574_consen 117 LSGSEYPGDYGLSFEELRDFHREQAEALADAGVDLLLFETMPSLA-----------------EAKAALEAIKEV--TGLP 177 (305)
T ss_dssp ------CTTCTT-HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-CS-----------------CHHHHHHHHHHH--HHCC
T ss_pred chhhhccccccccHHHHHHHHHHHHHHHHhcCCCEEEEecCcHHH-----------------HHHHHHHHHHhh--hhhh
Confidence 22456677777777777755569999998653211 134444555552 3333
Q ss_pred ceEecCCC-------------CHHHHHHHHHhCCCCceeeccccChhhhh-HHHHHHHHh-cCCeEEEeccCCcCCCCCC
Q 020174 171 KSIGVSNF-------------SPKKIETILAFATIPPTVNQVEMNPAWQQ-RKLVEFCKS-KSIIVTAFSPLGAVGSSWG 235 (330)
Q Consensus 171 r~iGvs~~-------------~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~l~~~~~-~gi~via~~~l~~~G~l~~ 235 (330)
-.++++.. ....++.+.......+..+-+|+...... ..+...... +++.+++|--.+ ..+.
T Consensus 178 ~~is~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~iGvNC~~~~~~~~~l~~~~~~~~~~~l~vyPNsG---~~~~ 254 (305)
T PF02574_consen 178 VWISFSCKDSGRLRDGTSLEDAVQVIDELLRALPPGPDAIGVNCTSPPEIMKALLELMSATHDIPLIVYPNSG---EPYD 254 (305)
T ss_dssp SSEEE-EEEEES-TCTTBCTTSHHHHHHHHHHHCTT-SEEEEESSS-HHHHHHHHHHHHHHT-SEEEEE--SB---S-TT
T ss_pred ceeccchhhhccccCCCCHHHHHHHHHHHHHHhhhhhheEEcCCCCcHHHHhHHHHHHhccCCceEEEecCCC---CCcc
Confidence 33444321 13344444332234566777777665544 333333333 388888875432 2211
Q ss_pred CCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCCEEeeCC--CCHHHHHHhhcccc
Q 020174 236 TNQVMNNEALKQIAAAHGKTVAQVCLRWIIEQGATAAVKS--FNKERLKENLEIFD 289 (330)
Q Consensus 236 ~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~~~i~g~--~~~~~l~~nl~~~~ 289 (330)
.. ......-..++. +-.+.+-+|+-+ |..+|=|+ ++|+|+++.-+.++
T Consensus 255 ~~-~~~~~~~~~~~~----~~~~~~~~~~~~-G~~iiGGCCGt~P~hI~al~~~l~ 304 (305)
T PF02574_consen 255 VG-KVWSETPEDFAP----EWAEFVKEWVEA-GARIIGGCCGTTPEHIRALAKALD 304 (305)
T ss_dssp SS-GGSTTTTTSHGG----G-HHHHHHHHHH-HHCEE---TT--HHHHHHHHHHTH
T ss_pred cc-cccccchhhhHH----HHHHHHHHHHHh-CCEEEEeCCCCCHHHHHHHHHHhc
Confidence 11 000000000000 023356667544 43344333 79999998766543
No 170
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=25.19 E-value=4.1e+02 Score=26.29 Aligned_cols=107 Identities=10% Similarity=0.031 Sum_probs=61.9
Q ss_pred ChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHH----cCCcceEecC--
Q 020174 103 HRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQR----HGLTKSIGVS-- 176 (330)
Q Consensus 103 ~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~----~GkIr~iGvs-- 176 (330)
+.+.|.+.++. ++..|...+-|+.=..|. ...++.+.+.++.+++ .|.++.|+++
T Consensus 116 s~EEI~~ea~~-~~~~G~~~i~LvsGe~p~------------------~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig 176 (469)
T PRK09613 116 TQEEIREEVKA-LEDMGHKRLALVAGEDPP------------------NCDIEYILESIKTIYSTKHGNGEIRRVNVNIA 176 (469)
T ss_pred CHHHHHHHHHH-HHHCCCCEEEEEeCCCCC------------------CCCHHHHHHHHHHHHHhccccCcceeeEEEee
Confidence 46677777764 567887666553111111 1225556666666665 4677766664
Q ss_pred CCCHHHHHHHHHhCCCCceeeccccChh--------------hhhHHHHHHHHhcCCeEEEeccCC
Q 020174 177 NFSPKKIETILAFATIPPTVNQVEMNPA--------------WQQRKLVEFCKSKSIIVTAFSPLG 228 (330)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~--------------~~~~~~l~~~~~~gi~via~~~l~ 228 (330)
..+.+++.++.+.+--...+.|=-||.- ..+-+.++.+++.|+.-++.+.+-
T Consensus 177 ~lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~ 242 (469)
T PRK09613 177 PTTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLF 242 (469)
T ss_pred cCCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEE
Confidence 4567778777666533334455444321 112357888999999855555553
No 171
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=25.09 E-value=1.6e+02 Score=28.28 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcC-CcceEecCCCC---HHHHHHHHHhCCC--CceeeccccChhhhhHHHHHHHHhcCCeEEE
Q 020174 155 NGVWEAMEECQRHG-LTKSIGVSNFS---PKKIETILAFATI--PPTVNQVEMNPAWQQRKLVEFCKSKSIIVTA 223 (330)
Q Consensus 155 ~~~~~~L~~l~~~G-kIr~iGvs~~~---~~~l~~~~~~~~~--~~~~~q~~~~~~~~~~~~l~~~~~~gi~via 223 (330)
..+++.+..|..+| .|.|+.|.... .+++++++....+ .+..+..+.....+-.++-+.|+++|+.+-.
T Consensus 102 ~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHv 176 (386)
T COG1104 102 PAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHV 176 (386)
T ss_pred HHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEE
Confidence 57888999998888 79999998754 7778777764321 1222222333333337899999999866543
No 172
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=24.85 E-value=6.1e+02 Score=24.15 Aligned_cols=34 Identities=6% Similarity=-0.064 Sum_probs=20.4
Q ss_pred HHHHHHHcCCcceEecCCC-CHHHHHHHHHhCCCC
Q 020174 160 AMEECQRHGLTKSIGVSNF-SPKKIETILAFATIP 193 (330)
Q Consensus 160 ~L~~l~~~GkIr~iGvs~~-~~~~l~~~~~~~~~~ 193 (330)
....+++.=.+.-+++..+ +++..+++++.+..+
T Consensus 296 ~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D 330 (382)
T cd02931 296 YCKALKEVVDVPVIMAGRMEDPELASEAINEGIAD 330 (382)
T ss_pred HHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCC
Confidence 3344454445666777666 467777777765433
No 173
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=24.71 E-value=3.4e+02 Score=23.95 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=58.4
Q ss_pred CChhHHHHHHHHHHHcCCCeE-eCCCCcC-----CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCC---CCChhhHHHH
Q 020174 40 IDESAMKSAVLESIKLGYRHF-DTASLYG-----TERALGEAIAEALKLGLVASREELFITTKLWCS---DAHRDLVVPA 110 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~-DtA~~Yg-----se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~---~~~~~~i~~~ 110 (330)
.+.++..++++.|.+.|++-+ -|+.++- +.+.|-+.+.+.-. .-++.-+--|+.++ ..+.+.+..-
T Consensus 17 ~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~-----~~~~~aidl~v~pGQEIrIt~~vl~~l 91 (254)
T COG4464 17 KSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNE-----ILKKEAIDLKVLPGQEIRITGDVLDDL 91 (254)
T ss_pred CcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHH-----HHHhhcCCceeccCceEEEchHHHHHH
Confidence 356888999999999999855 5554442 45556555554310 01111222333222 1222222222
Q ss_pred HHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEe
Q 020174 111 LKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIG 174 (330)
Q Consensus 111 le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iG 174 (330)
-+.++-.++ |. +-+++-.|.... ...+-+.+-+|+-+|.|--|.
T Consensus 92 ~~g~I~tin-ds-kYlLIEF~~~~v------------------~~ya~~lf~elq~kGi~PIIA 135 (254)
T COG4464 92 DKGIILTIN-DS-KYLLIEFPMNHV------------------PRYADQLFFELQSKGIIPIIA 135 (254)
T ss_pred hcCcccccc-cc-ceEEEEccCCcc------------------hhhHHHHHHHHHHCCceeeee
Confidence 333334444 22 456666664322 234567888999999876554
No 174
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=24.61 E-value=5.2e+02 Score=23.27 Aligned_cols=121 Identities=8% Similarity=-0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCccceEE---eecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecC--------
Q 020174 108 VPALKKSLKTLQIEYVDLYL---IHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVS-------- 176 (330)
Q Consensus 108 ~~~le~sL~~Lg~d~iDl~~---lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs-------- 176 (330)
+..+-..|.++|+++|++-. ++........+ ..+.++.+.++...-++..+.-+
T Consensus 23 ~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~---------------~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~ 87 (275)
T cd07937 23 MLPIAEALDEAGFFSLEVWGGATFDVCMRFLNED---------------PWERLRELRKAMPNTPLQMLLRGQNLVGYRH 87 (275)
T ss_pred HHHHHHHHHHcCCCEEEccCCcchhhhccccCCC---------------HHHHHHHHHHhCCCCceehhcccccccCccC
Q ss_pred ---CCCHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCChHHHHHHHHH
Q 020174 177 ---NFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAA 251 (330)
Q Consensus 177 ---~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~ 251 (330)
+.....++...+.+ ++.+-+-.+.|....-.+.+++++++|..+...-.+.. ....+.+.+.+++++
T Consensus 88 ~p~~~~~~di~~~~~~g-~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~-------~~~~~~~~~~~~~~~ 157 (275)
T cd07937 88 YPDDVVELFVEKAAKNG-IDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTG-------SPVHTLEYYVKLAKE 157 (275)
T ss_pred CCcHHHHHHHHHHHHcC-CCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecC-------CCCCCHHHHHHHHHH
No 175
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.26 E-value=2.1e+02 Score=24.94 Aligned_cols=61 Identities=15% Similarity=0.100 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCC---cceEecCCC-CHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEE
Q 020174 156 GVWEAMEECQRHGL---TKSIGVSNF-SPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTA 223 (330)
Q Consensus 156 ~~~~~L~~l~~~Gk---Ir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via 223 (330)
...+.+++++++-. =-.||+-+. +.++++++++.+- .+.+ +|. ...+++++|+++|+.++.
T Consensus 50 ~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA-~Fiv-----sP~-~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 50 FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGA-QFIV-----SPS-FNRETAKICNLYQIPYLP 114 (213)
T ss_pred cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCC-CEEE-----CCC-CCHHHHHHHHHcCCCEEC
Confidence 34556666665421 124777664 4788888877653 3322 232 236899999999998886
No 176
>PRK09061 D-glutamate deacylase; Validated
Probab=24.12 E-value=7.2e+02 Score=24.71 Aligned_cols=109 Identities=14% Similarity=0.103 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCCCeEeCCCCc--C-CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCC-ChhhHHHHHHHHHhhcCC
Q 020174 45 MKSAVLESIKLGYRHFDTASLY--G-TERALGEAIAEALKLGLVASREELFITTKLWCSDA-HRDLVVPALKKSLKTLQI 120 (330)
Q Consensus 45 ~~~~l~~A~~~Gi~~~DtA~~Y--g-se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~-~~~~i~~~le~sL~~Lg~ 120 (330)
..++++.|++.|+..|=+...| + +...+-..++.. .+-+..|.+-...... ++.....++++.++.-+.
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A-------~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~ 243 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLA-------ARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAE 243 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHH-------HHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHH
Confidence 5677888999999999776666 2 444455555544 2334566665533221 122223344444433321
Q ss_pred CccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecC
Q 020174 121 EYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVS 176 (330)
Q Consensus 121 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs 176 (330)
--.-+.+.|--.... ....+.++.+++++++|.--..-++
T Consensus 244 ~G~rv~IsHlss~g~----------------~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 244 TGAHMHICHVNSTSL----------------RDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred hCCCEEEEeeccCCc----------------ccHHHHHHHHHHHHHcCCcEEEEec
Confidence 123366667643211 1246788899999999853333444
No 177
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=24.11 E-value=6e+02 Score=23.79 Aligned_cols=137 Identities=13% Similarity=0.121 Sum_probs=68.0
Q ss_pred ChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHH
Q 020174 103 HRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKK 182 (330)
Q Consensus 103 ~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~ 182 (330)
+++.+.+.+++. ...|...+.+..-+.|+ ...+.+.+.++.++++.- .+-++.+++..
T Consensus 80 ~~eeI~~~a~~~-~~~G~~~v~l~~G~~p~-------------------~~~~~~~e~i~~Ik~~~p--~i~i~~~~~~e 137 (351)
T TIGR03700 80 SLEEIVARVKEA-YAPGATEVHIVGGLHPN-------------------LPFEWYLDMIRTLKEAYP--DLHVKAFTAVE 137 (351)
T ss_pred CHHHHHHHHHHH-HHCCCcEEEEecCCCCC-------------------CCHHHHHHHHHHHHHHCC--CceEEeCCHHH
Confidence 445555555432 45666666665433332 113455566666666542 23333344444
Q ss_pred HHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCChHHHHHHHHHhCCCHHH--HH
Q 020174 183 IETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGKTVAQ--VC 260 (330)
Q Consensus 183 l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q--la 260 (330)
+..+....+ ...++.+...++.|+..+... | .+.+.++.+..+++. +.+..+ -+
T Consensus 138 i~~~~~~~g-------------~~~~e~l~~LkeAGld~~~~~-----g-----~E~~~~~v~~~i~~~-~~~~~~~l~~ 193 (351)
T TIGR03700 138 IHHFSKISG-------------LPTEEVLDELKEAGLDSMPGG-----G-----AEIFAEEVRQQICPE-KISAERWLEI 193 (351)
T ss_pred HHHHHHHcC-------------CCHHHHHHHHHHcCCCcCCCC-----c-----ccccCHHHHhhcCCC-CCCHHHHHHH
Confidence 443322211 112566777777777655421 1 122333444455543 345555 27
Q ss_pred HHHHHhcC----CEEeeCCC-CHHHHHHhh
Q 020174 261 LRWIIEQG----ATAAVKSF-NKERLKENL 285 (330)
Q Consensus 261 l~~~l~~~----~~~i~g~~-~~~~l~~nl 285 (330)
++++...| +..++|.. +.++..+.+
T Consensus 194 i~~a~~~Gi~~~sg~i~GlgEt~edrv~~l 223 (351)
T TIGR03700 194 HRTAHELGLKTNATMLYGHIETPAHRVDHM 223 (351)
T ss_pred HHHHHHcCCCcceEEEeeCCCCHHHHHHHH
Confidence 77777777 45577773 444444444
No 178
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=24.06 E-value=4.4e+02 Score=25.66 Aligned_cols=70 Identities=10% Similarity=0.100 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCcc-----eEecCCCCH---------HHHHHHHHhCCCCceeeccccChhhhh-HHHHHHHHhcCCeEE
Q 020174 158 WEAMEECQRHGLTK-----SIGVSNFSP---------KKIETILAFATIPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVT 222 (330)
Q Consensus 158 ~~~L~~l~~~GkIr-----~iGvs~~~~---------~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~vi 222 (330)
++.|.+|.++|+|. ++|+.+... ..+.+.+....++-++.=-.+..+.|- .-+....++.||+++
T Consensus 289 lD~LreLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV 368 (431)
T TIGR01917 289 VDVLRDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVV 368 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEE
Confidence 47899999999996 555554331 223333444455544443345555554 346666777888888
Q ss_pred EeccC
Q 020174 223 AFSPL 227 (330)
Q Consensus 223 a~~~l 227 (330)
-+..+
T Consensus 369 ~i~~~ 373 (431)
T TIGR01917 369 HICTV 373 (431)
T ss_pred EEeec
Confidence 77655
No 179
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.99 E-value=6e+02 Score=23.74 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCcc-eEecCCCCHHHHHHHHHhCCCCceeeccccChh---hhhHHHHHHHHhcCCeEEEec
Q 020174 157 VWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVNQVEMNPA---WQQRKLVEFCKSKSIIVTAFS 225 (330)
Q Consensus 157 ~~~~L~~l~~~GkIr-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~l~~~~~~gi~via~~ 225 (330)
-++.+.+|+++.-+. +.|=|.++..++..+++... ++++|...... ..-.++..+|+++|+.++.++
T Consensus 215 d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~--~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 215 NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGA--VDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCC--CCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 367788888877666 55666778888888877654 34666665433 223689999999999998765
No 180
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=23.49 E-value=6.4e+02 Score=23.94 Aligned_cols=69 Identities=10% Similarity=0.075 Sum_probs=41.0
Q ss_pred HHHHHHHHHcC-CcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhh---hHHHHHHHHhcCCeEEEeccCCc
Q 020174 158 WEAMEECQRHG-LTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQ---QRKLVEFCKSKSIIVTAFSPLGA 229 (330)
Q Consensus 158 ~~~L~~l~~~G-kIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~~l~~~~~~gi~via~~~l~~ 229 (330)
...+..+...| +++.+.. +.+.++++++....+.+++....|+... -+++.+.|+++|+.++.=..++.
T Consensus 106 ~~~~~~~~~~g~~v~~~~~---d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~ 178 (385)
T PRK08574 106 LRLLKSLEKFGVKVVLAYP---STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFAT 178 (385)
T ss_pred HHHHHHhhccCcEEEEECC---CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCc
Confidence 34444444444 3444432 4677777665323445555555665422 26889999999999988777653
No 181
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=23.33 E-value=7e+02 Score=24.31 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeEeCCCCcC------------CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHH
Q 020174 46 KSAVLESIKLGYRHFDTASLYG------------TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKK 113 (330)
Q Consensus 46 ~~~l~~A~~~Gi~~~DtA~~Yg------------se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~ 113 (330)
.+.+....++|+|.|--+-.=. +.+.+-++++...+.| ...+.+--=++...-+.+.+++.++.
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g----~~~v~~DlI~GlPgqT~e~~~~~l~~ 238 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARD----RAAVVCDLIFGLPGQTPEIWQQDLAI 238 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCC----CCcEEEEEEeeCCCCCHHHHHHHHHH
Q ss_pred HHhhcCCCccceEEee-----------------cC-CCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEec
Q 020174 114 SLKTLQIEYVDLYLIH-----------------WP-MSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGV 175 (330)
Q Consensus 114 sL~~Lg~d~iDl~~lH-----------------~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGv 175 (330)
.++ |+.+++++|.+. .| +.... ..-.-.+.+.|.+.|. +.+++
T Consensus 239 ~~~-l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~-----------------~~my~~~~~~L~~~Gy-~~yei 299 (449)
T PRK09058 239 VRD-LGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAER-----------------ADMYAYGVEFLAKAGW-RQLSN 299 (449)
T ss_pred HHh-cCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHH-----------------HHHHHHHHHHHHHCCC-eEEee
Q ss_pred CCC
Q 020174 176 SNF 178 (330)
Q Consensus 176 s~~ 178 (330)
|||
T Consensus 300 s~f 302 (449)
T PRK09058 300 SHW 302 (449)
T ss_pred eee
No 182
>TIGR00035 asp_race aspartate racemase.
Probab=23.29 E-value=3.7e+02 Score=23.42 Aligned_cols=83 Identities=13% Similarity=0.009 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHH-
Q 020174 104 RDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKK- 182 (330)
Q Consensus 104 ~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~- 182 (330)
.+.+++=++.+-.+.+-++++.+.+++|+..+....... +.+ ..-...+.+.++.|.+.| +.+|-++.+++..
T Consensus 16 ~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~----~~~-~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~ 89 (229)
T TIGR00035 16 AELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILG----RGE-DRPRPILIDIAVKLENAG-ADFIIMPCNTAHKF 89 (229)
T ss_pred HHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhc----CCc-chHHHHHHHHHHHHHHcC-CCEEEECCccHHHH
Confidence 455666666777788889999999999975433111000 000 011345666777776654 7999999887655
Q ss_pred HHHHHHhCCC
Q 020174 183 IETILAFATI 192 (330)
Q Consensus 183 l~~~~~~~~~ 192 (330)
++++.+...+
T Consensus 90 ~~~l~~~~~i 99 (229)
T TIGR00035 90 AEDIQKAIGI 99 (229)
T ss_pred HHHHHHhCCC
Confidence 4444443333
No 183
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=23.17 E-value=3.4e+02 Score=21.60 Aligned_cols=18 Identities=11% Similarity=0.291 Sum_probs=14.7
Q ss_pred HHHHHHHHHcCCCeEeCC
Q 020174 46 KSAVLESIKLGYRHFDTA 63 (330)
Q Consensus 46 ~~~l~~A~~~Gi~~~DtA 63 (330)
...+..+++.|+|+||.-
T Consensus 31 ~~~i~~qL~~GvR~~dir 48 (135)
T smart00148 31 VEGYIQALDHGCRCVELD 48 (135)
T ss_pred HHHHHHHHHhCCCEEEEE
Confidence 456788999999999754
No 184
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=23.06 E-value=4.8e+02 Score=25.22 Aligned_cols=115 Identities=13% Similarity=0.119 Sum_probs=60.4
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhcC-CCccceEEeecCCCCCCCccccC
Q 020174 64 SLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQ-IEYVDLYLIHWPMSAKPSEKLRN 142 (330)
Q Consensus 64 ~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~ 142 (330)
-.||.++-+-++|++..+.- +.+-++|.|-..+. .--+.+..-+++.-++.. ...+.++.+|.|+......
T Consensus 61 ~VfGg~~~L~~~i~~~~~~~---~p~~I~V~ttc~~e-iIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~---- 132 (417)
T cd01966 61 TILGGGENLEEALDTLAERA---KPKVIGLLSTGLTE-TRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLE---- 132 (417)
T ss_pred EEECCHHHHHHHHHHHHHhc---CCCEEEEECCCccc-ccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHH----
Confidence 35888888888888765432 34556777665332 112333333333333311 0136789999987543211
Q ss_pred CCCccccccccHHHHHHHHHH-H--------HHcCCcceEecCCCC---HHHHHHHHHhCCCCce
Q 020174 143 DIPEEDLVSLDYNGVWEAMEE-C--------QRHGLTKSIGVSNFS---PKKIETILAFATIPPT 195 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~L~~-l--------~~~GkIr~iGvs~~~---~~~l~~~~~~~~~~~~ 195 (330)
.-.+.++++|.+ + +.+++|.-||-++.+ .+.+.++++..++.+.
T Consensus 133 ---------~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~ 188 (417)
T cd01966 133 ---------DGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPI 188 (417)
T ss_pred ---------HHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 112333333322 2 235568888755443 4566777776666553
No 185
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=23.00 E-value=5.2e+02 Score=22.67 Aligned_cols=105 Identities=8% Similarity=0.151 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCChHHHHHHHHHhC---------CCHHHHHHHHHHhcC-CEEeeCCCC
Q 020174 208 RKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHG---------KTVAQVCLRWIIEQG-ATAAVKSFN 277 (330)
Q Consensus 208 ~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~~---------~s~~qlal~~~l~~~-~~~i~g~~~ 277 (330)
+++....++.|+..++++.+.. . -....+..+|++.| .+..++ +.++ ..| .++|+++..
T Consensus 75 ~~l~~~l~~~gv~~vv~GdI~s------~---~qr~~~e~vc~~~gl~~~~PLW~~d~~~l-~e~i-~~Gf~aiIv~v~~ 143 (222)
T TIGR00289 75 EDLAGQLGELDVEALCIGAIES------N---YQKSRIDKVCRELGLKSIAPLWHADPEKL-MYEV-AEKFEVIIVSVSA 143 (222)
T ss_pred HHHHHHHHHcCCCEEEECcccc------H---HHHHHHHHHHHHcCCEEeccccCCCHHHH-HHHH-HcCCeEEEEEEcc
Confidence 4566666777887777666653 0 12345667777765 355565 4654 777 555555543
Q ss_pred HHHHHHhhcccccccCHHHHHHHhccCCCCCCCC-------CCcccCCCCCCCCcC
Q 020174 278 KERLKENLEIFDWALTDDDHDKIRQIPQRRMMPR-------DDFIIPHGPFKTPED 326 (330)
Q Consensus 278 ~~~l~~nl~~~~~~L~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 326 (330)
..|.+. -++..|+.+.++.|.++.+.+.+.+ +.|+.-+.-|+.++.
T Consensus 144 -~gL~~~--~LGr~id~~~~~~L~~l~~~~gid~~GEgGEyhT~V~d~PlF~~~i~ 196 (222)
T TIGR00289 144 -MGLDES--WLGRRIDKECIDDLKRLNEKYGIHLAFEGGEAETLVLDAPLFKKRIE 196 (222)
T ss_pred -CCCChH--HcCCccCHHHHHHHHHHHhhcCccccCCCceEEEEEEeccccCccee
Confidence 334433 3566899888888877644433322 234444445665554
No 186
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=22.91 E-value=4.3e+02 Score=23.28 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEeecCCCCCCh-----hhHHHHHHHHHhhcCCCccceEEeecC
Q 020174 72 LGEAIAEALKLGLVASREELFITTKLWCSDAHR-----DLVVPALKKSLKTLQIEYVDLYLIHWP 131 (330)
Q Consensus 72 lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~-----~~i~~~le~sL~~Lg~d~iDl~~lH~p 131 (330)
.|..|.++.++| .+=-+.+.|+........ +.-+..++.+++.||++. +.+|-.+
T Consensus 27 ~ggtla~~~~~G---~~V~v~~lT~Ge~g~~~~~~~l~~~R~~E~~~a~~~LGv~~--~~~l~~~ 86 (237)
T COG2120 27 CGGTLAKLAARG---VEVTVVCLTLGEAGENGGELELGAVRRAEARAAARVLGVRE--TIFLGFP 86 (237)
T ss_pred cHHHHHHHHHCC---CeEEEEEccCCcccccCCccchHHHHHHHHHHHHHhcCCCc--ceecCCC
Confidence 355555555555 233344444442222211 124566777888888754 4444444
No 187
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=22.88 E-value=14 Score=29.52 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=24.2
Q ss_pred ccCHHHHHHHhccCCCCCCCCCCcccCCCCCCCCcCcc
Q 020174 291 ALTDDDHDKIRQIPQRRMMPRDDFIIPHGPFKTPEDLW 328 (330)
Q Consensus 291 ~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (330)
.|.....++++++..-++....... .+|||+|.||+-
T Consensus 54 diN~A~~~el~~lpGigP~~A~~IV-~nGpf~sveDL~ 90 (132)
T PRK02515 54 DLNNSSVRAFRQFPGMYPTLAGKIV-KNAPYDSVEDVL 90 (132)
T ss_pred cCCccCHHHHHHCCCCCHHHHHHHH-HCCCCCCHHHHH
Confidence 6666666666665444444444444 699999999974
No 188
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=22.65 E-value=6.5e+02 Score=23.75 Aligned_cols=93 Identities=16% Similarity=0.098 Sum_probs=58.6
Q ss_pred hHHHHHHH--HHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHH
Q 020174 106 LVVPALKK--SLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKI 183 (330)
Q Consensus 106 ~i~~~le~--sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l 183 (330)
.+...+++ .|++.|. |++=+--|+ .+..+++.+++++=.+--|+=-.|+..-+
T Consensus 34 Dv~aTv~QI~~L~~aG~---dIVRvtv~~----------------------~e~A~A~~~Ik~~~~vPLVaDiHf~~rla 88 (361)
T COG0821 34 DVEATVAQIKALERAGC---DIVRVTVPD----------------------MEAAEALKEIKQRLNVPLVADIHFDYRLA 88 (361)
T ss_pred cHHHHHHHHHHHHHcCC---CEEEEecCC----------------------HHHHHHHHHHHHhCCCCEEEEeeccHHHH
Confidence 34444443 3566664 677666663 35678999999999888888888886555
Q ss_pred HHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEE
Q 020174 184 ETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTA 223 (330)
Q Consensus 184 ~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via 223 (330)
....+.+--..-+|--|+....+-.++++.|+++|+++=.
T Consensus 89 ~~~~~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRI 128 (361)
T COG0821 89 LEAAECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRI 128 (361)
T ss_pred HHhhhcCcceEEECCcccCcHHHHHHHHHHHHHcCCCEEE
Confidence 5555554222223322222223337899999999999833
No 189
>PLN02363 phosphoribosylanthranilate isomerase
Probab=22.58 E-value=3e+02 Score=24.77 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=47.2
Q ss_pred EeecCCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceE
Q 020174 94 TTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSI 173 (330)
Q Consensus 94 ~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~i 173 (330)
..|++.- .+.+.++.+ .++|.|++=+++.. .+.- ..+.+ ..+.+.+......++.+
T Consensus 48 ~VKICGi-t~~eda~~a-----~~~GaD~iGfIf~~--~SpR---------------~Vs~e-~a~~I~~~l~~~~~~~V 103 (256)
T PLN02363 48 LVKMCGI-TSARDAAMA-----VEAGADFIGMILWP--KSKR---------------SISLS-VAKEISQVAREGGAKPV 103 (256)
T ss_pred eEEECCC-CcHHHHHHH-----HHcCCCEEEEecCC--CCCC---------------cCCHH-HHHHHHHhccccCccEE
Confidence 3566543 234555544 45899998886432 2110 12233 33444443333246679
Q ss_pred ecC-CCCHHHHHHHHHhCCCCceeeccccC
Q 020174 174 GVS-NFSPKKIETILAFATIPPTVNQVEMN 202 (330)
Q Consensus 174 Gvs-~~~~~~l~~~~~~~~~~~~~~q~~~~ 202 (330)
||. +-+.+.+.++++.. .++++|++-.
T Consensus 104 gVfv~~~~~~I~~~~~~~--~ld~VQLHG~ 131 (256)
T PLN02363 104 GVFVDDDANTILRAADSS--DLELVQLHGN 131 (256)
T ss_pred EEEeCCCHHHHHHHHHhc--CCCEEEECCC
Confidence 986 66788888887765 4568888743
No 190
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=22.57 E-value=1.2e+02 Score=23.64 Aligned_cols=39 Identities=15% Similarity=-0.061 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHcCCCeEeCCCCcC-CHHHHHHHHHHHH
Q 020174 42 ESAMKSAVLESIKLGYRHFDTASLYG-TERALGEAIAEAL 80 (330)
Q Consensus 42 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg-se~~lG~~l~~~~ 80 (330)
.+.-..++...++.|.+.-+.|..|| +...+..|++++.
T Consensus 15 ~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y~ 54 (121)
T PRK09413 15 TQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQ 54 (121)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 44445777888999999999999999 9999999999873
No 191
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.52 E-value=5.1e+02 Score=24.54 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHH-HcCC---cceEecCCCC--HHHHHHHHHhCC-CCceeeccccChhhh------h----HHHHHHHH
Q 020174 153 DYNGVWEAMEECQ-RHGL---TKSIGVSNFS--PKKIETILAFAT-IPPTVNQVEMNPAWQ------Q----RKLVEFCK 215 (330)
Q Consensus 153 ~~~~~~~~L~~l~-~~Gk---Ir~iGvs~~~--~~~l~~~~~~~~-~~~~~~q~~~~~~~~------~----~~~l~~~~ 215 (330)
.++++++++.++. +.|+ |+++=+..++ .+.+.++.+... .+..++-++||+... . ..+....+
T Consensus 245 ~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~~~~~~ps~e~i~~f~~~l~ 324 (356)
T PRK14462 245 NIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEGSKFERPSLEDMIKFQDYLN 324 (356)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3577888887554 5554 6777676554 666666655432 455677778887542 1 23555677
Q ss_pred hcCCeEEEeccCCc
Q 020174 216 SKSIIVTAFSPLGA 229 (330)
Q Consensus 216 ~~gi~via~~~l~~ 229 (330)
++|+.+......+.
T Consensus 325 ~~gi~vtvR~~~G~ 338 (356)
T PRK14462 325 SKGLLCTIRESKGL 338 (356)
T ss_pred HCCCcEEEeCCCCC
Confidence 88999988877753
No 192
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=22.49 E-value=3.9e+02 Score=22.83 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=43.6
Q ss_pred HHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeecccc---ChhhhhHHHHHHHHhcCCeEEEeccCCc
Q 020174 160 AMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEM---NPAWQQRKLVEFCKSKSIIVTAFSPLGA 229 (330)
Q Consensus 160 ~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~---~~~~~~~~~l~~~~~~gi~via~~~l~~ 229 (330)
...+|++.|-. .+-+.-.+.+.|.++++- .+.++.-+.. .-..++..+++.|++.||..+.++.++.
T Consensus 36 ~~~~l~~~g~~-vv~~d~~~~~~l~~al~g--~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~ 105 (233)
T PF05368_consen 36 RAQQLQALGAE-VVEADYDDPESLVAALKG--VDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGA 105 (233)
T ss_dssp HHHHHHHTTTE-EEES-TT-HHHHHHHHTT--CSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESS
T ss_pred hhhhhhcccce-EeecccCCHHHHHHHHcC--CceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecc
Confidence 34566677764 566666678888888774 3444444442 2233447899999999999999999976
No 193
>PRK07714 hypothetical protein; Provisional
Probab=22.49 E-value=3.4e+02 Score=20.32 Aligned_cols=63 Identities=6% Similarity=0.018 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEe
Q 020174 155 NGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAF 224 (330)
Q Consensus 155 ~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~ 224 (330)
..++..|--.++.|++- .|. ++..+.++......+++--..+.. ..+.+..+|+.++|+++.+
T Consensus 4 ~~~~~~Lgla~raGk~v-~G~-----~~v~~al~~g~~~lViiA~D~s~~-~~~ki~~~~~~~~vp~~~~ 66 (100)
T PRK07714 4 SDWKSFLGLANRARKVI-SGE-----ELVLKEVRSGKAKLVLLSEDASVN-TTKKITDKCTYYNVPMRKV 66 (100)
T ss_pred HHHHHHHHHHHHhCCee-ecH-----HHHHHHHHhCCceEEEEeCCCCHH-HHHHHHHHHHhcCCCEEEe
Confidence 46778888899999876 444 666777777766666665555543 3367888999999998753
No 194
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=22.06 E-value=1.6e+02 Score=28.01 Aligned_cols=201 Identities=14% Similarity=0.184 Sum_probs=88.2
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCcCC---HH---HHHHHHHHHHhcCCCCCCCceEEEeecCCC-----CCChhhHHH
Q 020174 41 DESAMKSAVLESIKLGYRHFDTASLYGT---ER---ALGEAIAEALKLGLVASREELFITTKLWCS-----DAHRDLVVP 109 (330)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygs---e~---~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~-----~~~~~~i~~ 109 (330)
+.++..+.|+.|.+.|++.+-|+=+..- +. .+.+.++.. ....+.|+.-+.+. ..+.+.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a-------~~~~~~v~~Disp~~l~~lg~~~~dl-- 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLA-------KELGMEVIADISPKVLKKLGISYDDL-- 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHH-------HHCT-EEEEEE-CCHHHTTT-BTTBT--
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHH-------HHCCCEEEEECCHHHHHHcCCCHHHH--
Confidence 4567789999999999999988866531 11 122222222 23446666555332 1111111
Q ss_pred HHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHh
Q 020174 110 ALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAF 189 (330)
Q Consensus 110 ~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~ 189 (330)
..|+.||++. +=|..- .+. +.+.+|-+.|.--.+=.|+.+.+.++.+++.
T Consensus 83 ---~~~~~lGi~~---lRlD~G--------------------f~~----~~ia~ls~ng~~I~LNASti~~~~l~~L~~~ 132 (357)
T PF05913_consen 83 ---SFFKELGIDG---LRLDYG--------------------FSG----EEIAKLSKNGIKIELNASTITEEELDELIKY 132 (357)
T ss_dssp ---HHHHHHT-SE---EEESSS---------------------SC----HHHHHHTTT-SEEEEETTT--CCHHHHHCCT
T ss_pred ---HHHHHcCCCE---EEECCC--------------------CCH----HHHHHHHhCCCEEEEECCCCChHHHHHHHHh
Confidence 1234455322 211111 111 3344455556655677788777888877665
Q ss_pred CC-CCceeeccccChhhhh-------HHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHH
Q 020174 190 AT-IPPTVNQVEMNPAWQQ-------RKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGKTVAQVCL 261 (330)
Q Consensus 190 ~~-~~~~~~q~~~~~~~~~-------~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~qlal 261 (330)
.. ..-.....+|.|.... .+.-++.++.|+.+.|+-|-.. ...|| +.. -+--+ ++|.--+..+|.
T Consensus 133 ~~~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~--~~rGP--l~~--GLPTl-E~hR~~~p~~aa 205 (357)
T PF05913_consen 133 GANFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDE--NKRGP--LYE--GLPTL-EKHRNLPPYAAA 205 (357)
T ss_dssp T--GGGEEEE---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SS--S-BTT--T-S----BSB-GGGTTS-HHHHH
T ss_pred cCCHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCC--cccCC--ccC--CCCcc-HHHcCCCHHHHH
Confidence 42 2222333444443211 3456778999999999887652 22222 100 00000 123333344556
Q ss_pred HHHHhcC--CEEeeCCC--CHHHHHHhhcc
Q 020174 262 RWIIEQG--ATAAVKSF--NKERLKENLEI 287 (330)
Q Consensus 262 ~~~l~~~--~~~i~g~~--~~~~l~~nl~~ 287 (330)
+.....+ .-+++|=. +.++++.-...
T Consensus 206 ~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 206 LELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp HHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred HHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 6666666 67777654 44555554433
No 195
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=22.06 E-value=4e+02 Score=24.14 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChh
Q 020174 154 YNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPA 204 (330)
Q Consensus 154 ~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~ 204 (330)
++.+.+.++.+.+.|+.--||.+.|+.++++++.+.+..-+++.--|+++.
T Consensus 79 P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfSiG 129 (266)
T COG0289 79 PEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAPNFSLG 129 (266)
T ss_pred chhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEEeccchHH
Confidence 577889999999999999999999999999888777664455555666653
No 196
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=22.06 E-value=6e+02 Score=24.00 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhh---hHHHHHHHHhcCCeEEEeccCC
Q 020174 157 VWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQ---QRKLVEFCKSKSIIVTAFSPLG 228 (330)
Q Consensus 157 ~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~~l~~~~~~gi~via~~~l~ 228 (330)
....+..+.+.-.++..-+...+.+.++++++. +.+.++...+.|+... -+++.+.|+++|+.++.=..++
T Consensus 98 ~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~-~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~ 171 (378)
T TIGR01329 98 TDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGP-KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMM 171 (378)
T ss_pred HHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCc-CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCc
Confidence 333344433332333333333467777777642 3445555556666432 2678999999999998777654
No 197
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=22.05 E-value=3.4e+02 Score=26.00 Aligned_cols=68 Identities=9% Similarity=0.051 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCcc-eEecCCCCHHHHHHHHHhCCCCceeeccccChh---hhhHHHHHHHHhcCCeEEEeccC
Q 020174 158 WEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVNQVEMNPA---WQQRKLVEFCKSKSIIVTAFSPL 227 (330)
Q Consensus 158 ~~~L~~l~~~GkIr-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~l~~~~~~gi~via~~~l 227 (330)
++.+.+|++...+. +.|-|.++..++..+++... +++.|...... ..-.++..+|+++|+.++.++..
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~a--vdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNA--VDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCC--CcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 56677777776655 55656666777777776553 44666665432 22367888888889888887654
No 198
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=22.01 E-value=5.1e+02 Score=25.22 Aligned_cols=70 Identities=9% Similarity=0.079 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCcc-----eEecCCCCH---------HHHHHHHHhCCCCceeeccccChhhhh-HHHHHHHHhcCCeEE
Q 020174 158 WEAMEECQRHGLTK-----SIGVSNFSP---------KKIETILAFATIPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVT 222 (330)
Q Consensus 158 ~~~L~~l~~~GkIr-----~iGvs~~~~---------~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~vi 222 (330)
++.|.+|.++|+|. ++|+.+... ..+.+-+...+++-++.=-.+..+.|- .-+....++.||+++
T Consensus 289 lD~LreLekEG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPvv 368 (431)
T TIGR01918 289 VDVLRDYEKEGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPVV 368 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEE
Confidence 47899999999996 555544331 222333344445544443345555554 446666777888888
Q ss_pred EeccC
Q 020174 223 AFSPL 227 (330)
Q Consensus 223 a~~~l 227 (330)
-+..+
T Consensus 369 ~~~~~ 373 (431)
T TIGR01918 369 HMCTV 373 (431)
T ss_pred EEeec
Confidence 77664
No 199
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.88 E-value=2.3e+02 Score=21.72 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHcCCCeEeCCCCcC--CHHHHHHHHHHHHhcCCCCCCCceEEEeec-CCC-----------------CC
Q 020174 43 SAMKSAVLESIKLGYRHFDTASLYG--TERALGEAIAEALKLGLVASREELFITTKL-WCS-----------------DA 102 (330)
Q Consensus 43 ~~~~~~l~~A~~~Gi~~~DtA~~Yg--se~~lG~~l~~~~~~g~~~~R~~v~I~tK~-~~~-----------------~~ 102 (330)
.-..+.-.-.+++|.-|+-|-..|- .|.++--.|-+ ..+++++++|+ |.. +-
T Consensus 20 a~LYsaYMpfl~nGglFVpTnk~y~iG~evfl~l~lld--------~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e 91 (117)
T COG3215 20 ALLYSAYMPFLENGGLFVPTNKVYSIGEEVFLLLELLD--------FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGE 91 (117)
T ss_pred HHHHHHHhHHHhcCcEEcccCCccccchhhhhhhhhcC--------chhhccccceEEEEccCCCCCCCCceeeeccCCC
Confidence 3344555566899999999999995 56555433331 46789999998 211 11
Q ss_pred ChhhHHHHHHHHHh
Q 020174 103 HRDLVVPALKKSLK 116 (330)
Q Consensus 103 ~~~~i~~~le~sL~ 116 (330)
.-..+++++|.-|.
T Consensus 92 ~g~~vr~~IE~~Lg 105 (117)
T COG3215 92 NGLKVRNQIETLLG 105 (117)
T ss_pred chhhHHHHHHHHHH
Confidence 12468888888774
No 200
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=21.70 E-value=7.6e+02 Score=24.11 Aligned_cols=124 Identities=12% Similarity=0.086 Sum_probs=71.0
Q ss_pred cccccHHHHHHHHHHHHHcC-CcceEecC--CC--CHHHHHHHHHh---CCCCceeeccccChhhhhHHHHHHHHhcCCe
Q 020174 149 LVSLDYNGVWEAMEECQRHG-LTKSIGVS--NF--SPKKIETILAF---ATIPPTVNQVEMNPAWQQRKLVEFCKSKSII 220 (330)
Q Consensus 149 ~~~~~~~~~~~~L~~l~~~G-kIr~iGvs--~~--~~~~l~~~~~~---~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~ 220 (330)
++..+.+.+++.++.+++.. .++.+-+. +| +...+.++++. .++... .+...+ -..++++..++.|+.
T Consensus 224 ~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~-~~~~~~---~~~e~l~~l~~aG~~ 299 (472)
T TIGR03471 224 YRTRSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWS-CNARAN---VDYETLKVMKENGLR 299 (472)
T ss_pred eEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEE-EEecCC---CCHHHHHHHHHcCCC
Confidence 34567899999999999874 56655543 33 24444444332 222221 112211 246788999998877
Q ss_pred EEEeccCCcCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcC----CEEeeCC--CCHHHHHHhhcc
Q 020174 221 VTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGKTVAQVCLRWIIEQG----ATAAVKS--FNKERLKENLEI 287 (330)
Q Consensus 221 via~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~----~~~i~g~--~~~~~l~~nl~~ 287 (330)
.+..+.=. ...+.++.+.+.+...-..-+++++...| ...|+|. .+.+.+++.++.
T Consensus 300 ~v~iGiES-----------~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~ 361 (472)
T TIGR03471 300 LLLVGYES-----------GDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDF 361 (472)
T ss_pred EEEEcCCC-----------CCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHH
Confidence 65533322 23455666644332223334667777777 3456674 688888887654
No 201
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=21.67 E-value=5.9e+02 Score=22.86 Aligned_cols=153 Identities=20% Similarity=0.234 Sum_probs=74.8
Q ss_pred HHHHHHHHHHcCCCeEeCCCCcC---CHH--HHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhcC
Q 020174 45 MKSAVLESIKLGYRHFDTASLYG---TER--ALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQ 119 (330)
Q Consensus 45 ~~~~l~~A~~~Gi~~~DtA~~Yg---se~--~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg 119 (330)
..+.++..-+.|..+|..++.=| .+. .++..|++. .|+ +-=.+++ ..+.++..++..+... ..+|
T Consensus 17 l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~--~g~---~~i~Hlt----~r~~n~~~l~~~L~~~-~~~G 86 (272)
T TIGR00676 17 LWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKE--TGI---PTVPHLT----CIGATREEIREILREY-RELG 86 (272)
T ss_pred HHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHh--cCC---CeeEEee----ecCCCHHHHHHHHHHH-HHCC
Confidence 33444444577899999887654 122 233444421 132 1112233 2245666777777644 7777
Q ss_pred CCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHc-CCcceEecCCCC--------H-HHHHHHHHh
Q 020174 120 IEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRH-GLTKSIGVSNFS--------P-KKIETILAF 189 (330)
Q Consensus 120 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-GkIr~iGvs~~~--------~-~~l~~~~~~ 189 (330)
++ +++.|-. |....+. + ..+. . +..+.+-++.+++. |. -+||+..+. . ..++.+.+.
T Consensus 87 i~--nvL~l~G-D~~~~~~----~-~~~~--~--f~~a~~Li~~i~~~~~~-f~ig~a~~Peghp~~~~~~~~~~~L~~K 153 (272)
T TIGR00676 87 IR--HILALRG-DPPKGEG----T-PTPG--G--FNYASELVEFIRNEFGD-FDIGVAAYPEKHPEAPNLEEDIENLKRK 153 (272)
T ss_pred CC--EEEEeCC-CCCCCCC----C-CCCC--C--CCCHHHHHHHHHHhcCC-eeEEEEeCCCCCCCCCCHHHHHHHHHHH
Confidence 53 3444433 2211110 0 0000 0 11233333444443 33 468877642 1 233433322
Q ss_pred --CCCCceeeccccChhhhhHHHHHHHHhcCCeE
Q 020174 190 --ATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIV 221 (330)
Q Consensus 190 --~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v 221 (330)
++.++.+.|.-|+.-. =.++++.|++.|+.+
T Consensus 154 ~~aGA~f~iTQ~~fd~~~-~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 154 VDAGADYAITQLFFDNDD-YYRFVDRCRAAGIDV 186 (272)
T ss_pred HHcCCCeEeeccccCHHH-HHHHHHHHHHcCCCC
Confidence 3456778888776521 156788899997654
No 202
>PRK09776 putative diguanylate cyclase; Provisional
Probab=21.60 E-value=8.2e+02 Score=26.52 Aligned_cols=134 Identities=11% Similarity=0.060 Sum_probs=77.1
Q ss_pred ceEEEeecCCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCC
Q 020174 90 ELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL 169 (330)
Q Consensus 90 ~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 169 (330)
.+.++-.+.+.......+...+.+.|++.+.. .+-+.+--..... ....+.+.+.++.|++.|-
T Consensus 925 ~~~~~iNis~~~l~~~~~~~~~~~~l~~~~~~-~~~l~~Ei~e~~~---------------~~~~~~~~~~~~~l~~~G~ 988 (1092)
T PRK09776 925 GLSIALPLSVAGLSSPTLLPFLLEQLENSPLP-PRLLHLEITETAL---------------LNHAESASRLVQKLRLAGC 988 (1092)
T ss_pred CcEEEEEcCHHHhCCchHHHHHHHHHHhcCCC-HHHeEEEEecHHh---------------hcCHHHHHHHHHHHHHCCc
Confidence 34566666555455566777888888887754 2344443322110 1225678889999999997
Q ss_pred cceEecCCCCH--HHHHHHHHhCCCCceeeccccChhh--------hh--HHHHHHHHhcCCeEEEeccCCcCCCCCCCC
Q 020174 170 TKSIGVSNFSP--KKIETILAFATIPPTVNQVEMNPAW--------QQ--RKLVEFCKSKSIIVTAFSPLGAVGSSWGTN 237 (330)
Q Consensus 170 Ir~iGvs~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~--------~~--~~~l~~~~~~gi~via~~~l~~~G~l~~~~ 237 (330)
.+++.+|.. ..+..+.+ ++++++-+.-+... +. +.++..|++.|+.+++- |
T Consensus 989 --~~~lddfg~g~~~~~~l~~---~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iae------g------ 1051 (1092)
T PRK09776 989 --RVVLSDFGRGLSSFNYLKA---FMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLGMKTIAG------P------ 1051 (1092)
T ss_pred --EEEEcCCCCCchHHHHHHh---CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCcEEec------c------
Confidence 455555542 23333322 23444444433221 11 56888999999999983 2
Q ss_pred CCCChHHHHHHHHHhCCCHHH
Q 020174 238 QVMNNEALKQIAAAHGKTVAQ 258 (330)
Q Consensus 238 ~~~~~~~l~~la~~~~~s~~q 258 (330)
.+.++....++++|+...|
T Consensus 1052 --VEt~~~~~~l~~~g~~~~Q 1070 (1092)
T PRK09776 1052 --VELPLVLDTLSGIGVDLAY 1070 (1092)
T ss_pred --cCCHHHHHHHHHcCCCEEe
Confidence 2334555566666665544
No 203
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=21.57 E-value=5.7e+02 Score=22.65 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=57.0
Q ss_pred hHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcC-CcceEecCCCCHHHHH
Q 020174 106 LVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHG-LTKSIGVSNFSPKKIE 184 (330)
Q Consensus 106 ~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-kIr~iGvs~~~~~~l~ 184 (330)
.-+..+-+.|.++|+++|++-+ |.. -+.-++.++++.+.+ .++..+.+..+.+.++
T Consensus 20 ~~k~~i~~~L~~~Gv~~iE~g~---p~~--------------------~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~ 76 (259)
T cd07939 20 EEKLAIARALDEAGVDEIEVGI---PAM--------------------GEEEREAIRAIVALGLPARLIVWCRAVKEDIE 76 (259)
T ss_pred HHHHHHHHHHHHcCCCEEEEec---CCC--------------------CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHH
Confidence 3445566679999999999852 311 012345666666643 4777777767788888
Q ss_pred HHHHhCCCCceeeccccChhhh--------------hHHHHHHHHhcCCeEEE
Q 020174 185 TILAFATIPPTVNQVEMNPAWQ--------------QRKLVEFCKSKSIIVTA 223 (330)
Q Consensus 185 ~~~~~~~~~~~~~q~~~~~~~~--------------~~~~l~~~~~~gi~via 223 (330)
.+.+.+ ++..-+-+..|.... -.+.+++|+++|+.+..
T Consensus 77 ~a~~~g-~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 128 (259)
T cd07939 77 AALRCG-VTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSV 128 (259)
T ss_pred HHHhCC-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 777653 333223233333221 13678899999997653
No 204
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.21 E-value=3.6e+02 Score=28.05 Aligned_cols=65 Identities=20% Similarity=0.121 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHc--CCcceEecCCCCHH
Q 020174 104 RDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRH--GLTKSIGVSNFSPK 181 (330)
Q Consensus 104 ~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--GkIr~iGvs~~~~~ 181 (330)
.+.+++-++.....-.....-+|+|+..+... ....++|.+..++ +.+.+|.+++....
T Consensus 106 VDdIReLie~~~~~P~~gr~KViIIDEah~Ls-------------------~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 106 VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-------------------NHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHHHHHHHHHHHhchhcCCceEEEEEChHhcC-------------------HHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 45666666555443333456788888764321 2455666666666 88999999986444
Q ss_pred HHHHHH
Q 020174 182 KIETIL 187 (330)
Q Consensus 182 ~l~~~~ 187 (330)
-+..++
T Consensus 167 LlpTIr 172 (700)
T PRK12323 167 IPVTVL 172 (700)
T ss_pred hhhHHH
Confidence 343443
No 205
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=21.17 E-value=6.6e+02 Score=23.23 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=49.8
Q ss_pred CCCceEEEeecCCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHH
Q 020174 87 SREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQR 166 (330)
Q Consensus 87 ~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 166 (330)
.++.+.++.|.....+ ...+.+.+++..+++|. ++.+ ..|... +.....+.++.+..
T Consensus 22 ~~~~i~~v~k~~~~pf-~~~~~~Gi~~aa~~~G~---~v~~-~~~~~~------------------d~~~q~~~i~~li~ 78 (336)
T PRK15408 22 AAERIAFIPKLVGVGF-FTSGGNGAKEAGKELGV---DVTY-DGPTEP------------------SVSGQVQLINNFVN 78 (336)
T ss_pred CCcEEEEEECCCCCHH-HHHHHHHHHHHHHHhCC---EEEE-ECCCCC------------------CHHHHHHHHHHHHH
Confidence 4677888888654322 46788899999999984 4443 333211 13456688888887
Q ss_pred cCCcceEecCCCCHHHHHHH
Q 020174 167 HGLTKSIGVSNFSPKKIETI 186 (330)
Q Consensus 167 ~GkIr~iGvs~~~~~~l~~~ 186 (330)
+| +..|-++..+...+...
T Consensus 79 ~~-vdgIiv~~~d~~al~~~ 97 (336)
T PRK15408 79 QG-YNAIIVSAVSPDGLCPA 97 (336)
T ss_pred cC-CCEEEEecCCHHHHHHH
Confidence 65 88888887775544433
No 206
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=21.02 E-value=6.5e+02 Score=23.06 Aligned_cols=213 Identities=10% Similarity=0.067 Sum_probs=113.5
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCcCC--------------HHHHHHHHH---HHHhcCCCCCCCceEEEeecCCCC--
Q 020174 41 DESAMKSAVLESIKLGYRHFDTASLYGT--------------ERALGEAIA---EALKLGLVASREELFITTKLWCSD-- 101 (330)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygs--------------e~~lG~~l~---~~~~~g~~~~R~~v~I~tK~~~~~-- 101 (330)
.++.+.++-+..+++|-+.|.|.....+ +++...+++ +.... . .+.+++|+.-+++..
T Consensus 44 ~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~-~--~~~~~~VaGsiGP~g~~ 120 (304)
T PRK09485 44 NPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDE-F--WAEKPLVAGSVGPYGAY 120 (304)
T ss_pred ChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-h--ccCCceEEEecCCcccc
Confidence 4555566666778999999988843222 122222222 11100 0 122588888886532
Q ss_pred ------------CChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHc--
Q 020174 102 ------------AHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRH-- 167 (330)
Q Consensus 102 ------------~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-- 167 (330)
.+.+.+++......+.|--..+|++++-... +..++..+++.+++.
T Consensus 121 l~~~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~--------------------~~~E~~~~~~~~~~~~~ 180 (304)
T PRK09485 121 LADGSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIP--------------------NLDEAEALVELLKEEFP 180 (304)
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccC--------------------CHHHHHHHHHHHHHhcC
Confidence 2456777777777777755669999998652 256777777777755
Q ss_pred CCcceEecCCCC------HHHHHHHHHhC-C-CCceeeccccChhhhhHHHHHHHHhc-CCeEEEeccCCcCCCCCCCC-
Q 020174 168 GLTKSIGVSNFS------PKKIETILAFA-T-IPPTVNQVEMNPAWQQRKLVEFCKSK-SIIVTAFSPLGAVGSSWGTN- 237 (330)
Q Consensus 168 GkIr~iGvs~~~------~~~l~~~~~~~-~-~~~~~~q~~~~~~~~~~~~l~~~~~~-gi~via~~~l~~~G~l~~~~- 237 (330)
++=-.+.++..+ ...++.+++.. . ..+..+-+|+.-...-..+++...+. +..+++|-- + |....+.
T Consensus 181 ~~pv~is~~~~~~g~l~~G~~~~~~~~~l~~~~~~~~iGiNC~~p~~~~~~l~~~~~~~~~pl~~~PN-a--G~~~~~~~ 257 (304)
T PRK09485 181 GVPAWLSFTLRDGTHISDGTPLAEAAALLAASPQVVAVGVNCTAPELVTAAIAALRAVTDKPLVVYPN-S--GEVYDAVT 257 (304)
T ss_pred CCcEEEEEEeCCCCcCCCCCCHHHHHHHHhcCCCceEEEecCCCHHHHHHHHHHHHhccCCcEEEECC-C--CCCCCCCC
Confidence 554445544321 11223332221 1 23567778886332224455444442 556665543 2 3222110
Q ss_pred CC-CChHHHHHHHHHhCCCHHHHHHHHHHhcCCEEeeCC--CCHHHHHHhhccc
Q 020174 238 QV-MNNEALKQIAAAHGKTVAQVCLRWIIEQGATAAVKS--FNKERLKENLEIF 288 (330)
Q Consensus 238 ~~-~~~~~l~~la~~~~~s~~qlal~~~l~~~~~~i~g~--~~~~~l~~nl~~~ 288 (330)
.. .....-. ..++.+.+|+-. |+.+|=|+ ++|+|+++..+.+
T Consensus 258 ~~~~~~~~~~--------~~~~~~~~~~~~-G~~iiGGCCGttP~hI~al~~~l 302 (304)
T PRK09485 258 KTWHGPADDA--------SLGELAPEWYAA-GARLIGGCCRTTPEDIAALAAAL 302 (304)
T ss_pred CcccCCCChH--------HHHHHHHHHHHc-CCeEEeeCCCCCHHHHHHHHHHh
Confidence 00 0000000 234566777554 66666444 8999999876544
No 207
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=21.00 E-value=1.5e+02 Score=25.61 Aligned_cols=46 Identities=15% Similarity=0.287 Sum_probs=30.8
Q ss_pred ceEecCCC-CHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEE
Q 020174 171 KSIGVSNF-SPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTA 223 (330)
Q Consensus 171 r~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via 223 (330)
-.||+.+. +.++++++++.+- .+.+. |. -..+++++|+++|+.++.
T Consensus 60 ~~vGAGTV~~~e~a~~a~~aGA-~FivS-----P~-~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 60 LLVGAGTVLTAEQAEAAIAAGA-QFIVS-----PG-FDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp SEEEEES--SHHHHHHHHHHT--SEEEE-----SS---HHHHHHHHHHTSEEEE
T ss_pred CeeEEEeccCHHHHHHHHHcCC-CEEEC-----CC-CCHHHHHHHHHcCCcccC
Confidence 34787764 5788888887753 33222 22 237899999999999987
No 208
>smart00642 Aamy Alpha-amylase domain.
Probab=20.99 E-value=1.8e+02 Score=24.08 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCC-Cceeecc--ccChhhhhHHHHHHHHhcCCeEEEeccCCc
Q 020174 154 YNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATI-PPTVNQV--EMNPAWQQRKLVEFCKSKSIIVTAFSPLGA 229 (330)
Q Consensus 154 ~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~-~~~~~q~--~~~~~~~~~~~l~~~~~~gi~via~~~l~~ 229 (330)
+.++.+.|..|++-| +.+|=++-.....-... ..... .....++ .|.-...=+.+++.|+++||.|+.=-.+..
T Consensus 18 ~~gi~~~l~yl~~lG-~~~I~l~Pi~~~~~~~~-~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 18 LQGIIEKLDYLKDLG-VTAIWLSPIFESPQGYP-SYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHHHHHCC-CCEEEECcceeCCCCCC-CCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 678888888888877 55555543211100000 00000 0011111 111111116799999999999998766654
No 209
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=20.99 E-value=2.9e+02 Score=23.62 Aligned_cols=71 Identities=11% Similarity=0.128 Sum_probs=43.4
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCcC-CHHHHH--HHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhh
Q 020174 41 DESAMKSAVLESIKLGYRHFDTASLYG-TERALG--EAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKT 117 (330)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-se~~lG--~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~ 117 (330)
++++.....+.|.++|..++=|+..|. .-..++ +.+++.+ +.+ +-.|+...-.+.+...+-++--..|
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~-------~~~--v~ik~aGGikt~~~~l~~~~~g~~r 199 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAV-------GGR--VGVKAAGGIRTLEDALAMIEAGATR 199 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-------CCC--ceEEEeCCCCCHHHHHHHHHhChhh
Confidence 467788888999999999999998886 111111 3334331 111 2344422222567777777766777
Q ss_pred cCC
Q 020174 118 LQI 120 (330)
Q Consensus 118 Lg~ 120 (330)
+|+
T Consensus 200 iG~ 202 (203)
T cd00959 200 IGT 202 (203)
T ss_pred ccC
Confidence 775
No 210
>PLN02540 methylenetetrahydrofolate reductase
Probab=20.99 E-value=8.9e+02 Score=24.63 Aligned_cols=157 Identities=13% Similarity=0.135 Sum_probs=80.2
Q ss_pred HHHHHHHHHcCCCeEeCCCCcC---CHHHHHH--HHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhcCC
Q 020174 46 KSAVLESIKLGYRHFDTASLYG---TERALGE--AIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQI 120 (330)
Q Consensus 46 ~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~--~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~ 120 (330)
.+.+++-...|-.|+|....=| ++..+.- .++.. -| +-.+--+.+.+.+...+...|++. ..+|+
T Consensus 18 ~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~--~G-------ie~i~HLTCrd~n~~~L~~~L~~a-~~~GI 87 (565)
T PLN02540 18 FERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNM--IC-------VETMMHLTCTNMPVEKIDHALETI-KSNGI 87 (565)
T ss_pred HHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHh--cC-------CCeeEEeeecCCCHHHHHHHHHHH-HHCCC
Confidence 3444555678899999877655 2333322 22221 02 222233334456666777766665 78886
Q ss_pred CccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHc-CCcceEecCCCCH------------------H
Q 020174 121 EYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRH-GLTKSIGVSNFSP------------------K 181 (330)
Q Consensus 121 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-GkIr~iGvs~~~~------------------~ 181 (330)
. .++.|..- ....++.. ..... .+..+.+-++.+++. |..-.|||+.+.. .
T Consensus 88 r--NILALrGD-pp~~~d~~--~~~~g-----~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~ 157 (565)
T PLN02540 88 Q--NILALRGD-PPHGQDKF--VQVEG-----GFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQK 157 (565)
T ss_pred C--EEEEECCC-CCCCCCCc--CCCCC-----CcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHH
Confidence 4 45555542 21111100 00000 112234444444443 4456788886531 2
Q ss_pred HHHHHHHh--CCCCceeeccccChhhhhHHHHHHHHhcC--CeEEE
Q 020174 182 KIETILAF--ATIPPTVNQVEMNPAWQQRKLVEFCKSKS--IIVTA 223 (330)
Q Consensus 182 ~l~~~~~~--~~~~~~~~q~~~~~~~~~~~~l~~~~~~g--i~via 223 (330)
.+..+.+. ++.++.+.|+-|..-.- .+.++.|++.| +.|++
T Consensus 158 dl~~Lk~KvdAGAdFiITQlfFD~d~f-~~f~~~~r~~Gi~vPIip 202 (565)
T PLN02540 158 DLAYLKEKVDAGADLIITQLFYDTDIF-LKFVNDCRQIGITCPIVP 202 (565)
T ss_pred HHHHHHHHHHcCCCEEeeccccCHHHH-HHHHHHHHhcCCCCCEEe
Confidence 34433322 45677888887765211 46788899998 44443
No 211
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=20.97 E-value=6.8e+02 Score=23.29 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcCCCeEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeecCC---CCCChhhHHHHHHHHHhhcCCC
Q 020174 45 MKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWC---SDAHRDLVVPALKKSLKTLQIE 121 (330)
Q Consensus 45 ~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~---~~~~~~~i~~~le~sL~~Lg~d 121 (330)
-+++++.+-+.|| .+|.|+. |++.+-+++.- -+..+|+|-... .++.+.--.++++...++=|+
T Consensus 151 Gk~lV~~~N~LgI-iiDlSH~--s~kt~~Dvl~~---------s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGv- 217 (313)
T COG2355 151 GKELVREMNELGI-IIDLSHL--SDKTFWDVLDL---------SKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGV- 217 (313)
T ss_pred HHHHHHHHHhcCC-EEEeccc--CCccHHHHHhc---------cCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCE-
Confidence 4788999999998 5899987 77777777763 344566665432 133334445667777777664
Q ss_pred ccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCcceEecCC
Q 020174 122 YVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSN 177 (330)
Q Consensus 122 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkIr~iGvs~ 177 (330)
|.+.++-..... ... ...+++++.+.+..+++.+-+++||+.+
T Consensus 218 -Igv~~~~~fl~~-~~~-----------~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 218 -IGVNFIPAFLRP-GGA-----------ARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred -EEEEeehhhccC-CCC-----------CCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 555544433221 000 0124789999999999999999999974
No 212
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=20.88 E-value=4.8e+02 Score=22.81 Aligned_cols=72 Identities=8% Similarity=0.009 Sum_probs=45.1
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCcC----CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHH
Q 020174 40 IDESAMKSAVLESIKLGYRHFDTASLYG----TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSL 115 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg----se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL 115 (330)
.++++..++...+.+.|..++=|+..|+ +.+.+....+.. +.+ +..|....=.+.+...+-++.--
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~--------~~~--~~IKasGGIrt~~~a~~~i~aGA 202 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV--------GPR--VGVKASGGIRTLEDALAMIEAGA 202 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh--------CCC--ceEEeeCCcCCHHHHHHHHHcCc
Confidence 3567788888999999999999999984 454443333322 222 33343332234566666666666
Q ss_pred hhcCCC
Q 020174 116 KTLQIE 121 (330)
Q Consensus 116 ~~Lg~d 121 (330)
.|+|+.
T Consensus 203 ~riGtS 208 (221)
T PRK00507 203 TRLGTS 208 (221)
T ss_pred ceEccC
Confidence 666664
No 213
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=20.87 E-value=6.7e+02 Score=23.15 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=54.6
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCcCCHHH----HHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHH
Q 020174 40 IDESAMKSAVLESIKLGYRHFDTASLYGTERA----LGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSL 115 (330)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~----lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL 115 (330)
.+.++..++++.+.+.|+..|--+ |-|.+ +-+.++...+.+ ...++-|+|-.. .+. ..-+.|
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~t---GGEPllr~dl~~li~~i~~~~---~l~~i~itTNG~-------ll~-~~~~~L 110 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLT---GGEPLVRRGCDQLVARLGKLP---GLEELSLTTNGS-------RLA-RFAAEL 110 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---CcCCCccccHHHHHHHHHhCC---CCceEEEEeChh-------HHH-HHHHHH
Confidence 456788888888889999877543 32222 223333221111 122566666531 122 244556
Q ss_pred hhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCC
Q 020174 116 KTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL 169 (330)
Q Consensus 116 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 169 (330)
...|++++- +-++..+...-.. . ...-.++.+++.++.+++.|.
T Consensus 111 ~~aGl~~v~-ISlDs~~~e~~~~-----i----~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 111 ADAGLKRLN-ISLDTLRPELFAA-----L----TRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred HHcCCCeEE-EEeccCCHHHhhh-----h----cCCCCHHHHHHHHHHHHHcCC
Confidence 677777654 3444443211000 0 001236778888888887764
No 214
>COG1795 Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion]
Probab=20.85 E-value=1.8e+02 Score=23.87 Aligned_cols=51 Identities=16% Similarity=0.472 Sum_probs=33.2
Q ss_pred cC-CHHHHHHHHHHHHhcCCCCCC---CceEEEeecCCC----------CCChhhHHHHHHHHHhh
Q 020174 66 YG-TERALGEAIAEALKLGLVASR---EELFITTKLWCS----------DAHRDLVVPALKKSLKT 117 (330)
Q Consensus 66 Yg-se~~lG~~l~~~~~~g~~~~R---~~v~I~tK~~~~----------~~~~~~i~~~le~sL~~ 117 (330)
+| ++..+.+++.+...+|++ +| ++++|++.++.. .+.+...+.++++.++.
T Consensus 80 fGpaQ~AVAkAVadsveegii-p~e~~dd~vvi~svfv~~~a~d~~kiY~ynY~A~klAi~rAm~~ 144 (170)
T COG1795 80 FGPAQAAVAKAVADSVEEGII-PREQADDVVVIVSVFVHPEAEDKRKIYQYNYGATKLAIKRAMEG 144 (170)
T ss_pred hcHHHHHHHHHHHHHHHhcCC-ChhHhcCEEEEEEeEeCcccccHHHHHHHhHHHHHHHHHHHHcC
Confidence 45 677888888888888888 44 668888777532 12244555666665553
No 215
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=20.84 E-value=7.2e+02 Score=23.53 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHhCCCCceeeccccChhhh---hHHHHHHHHhcCCeEEEeccCC
Q 020174 177 NFSPKKIETILAFATIPPTVNQVEMNPAWQ---QRKLVEFCKSKSIIVTAFSPLG 228 (330)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~~l~~~~~~gi~via~~~l~ 228 (330)
..+.+.+++.+.. ..+.+++..+.|+... -+++.++|+++|+.++.=.+++
T Consensus 133 ~~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a 186 (388)
T PRK07811 133 LSDLDAVRAAITP-RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFA 186 (388)
T ss_pred CCCHHHHHHhcCc-CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCC
Confidence 3467777776643 3445555566666432 2678999999999998776665
No 216
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=20.80 E-value=49 Score=29.34 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=28.6
Q ss_pred cccCccceeccccC--------------CChhHHHHHHHHHHHcCCCeEeCCCCcCCHHHHHHHHHHH
Q 020174 26 RKMPVIGLGSAVDN--------------IDESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEA 79 (330)
Q Consensus 26 ~~vs~lglG~~~~~--------------~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~~l~~~ 79 (330)
..|.++++.+...+ ..-+--......|.+.|+++||.+ +|.+|...-+.|.++
T Consensus 168 ~~v~rVav~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~lI~~g-H~~sE~~~~~~l~~~ 234 (241)
T PF01784_consen 168 KKVKRVAVCGGSGGSFIEEAAEAGADVYITGDIKYHDAQDAKENGINLIDAG-HYASERPGMEALAEW 234 (241)
T ss_dssp SEEEEEEEECSSSGGGHHHHHHTTSSEEEESS--HHHHHHHHHCTSEEEE---HHHHGGHHHHHHHHH
T ss_pred CcccEEEEEcccCccHHHHHHhCCCeEEEEccCcHHHHHHHHHCCCEEEEcC-CHHHHHHHHHHHHHH
Confidence 77888777665432 000111223456677888888877 677666554555444
No 217
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=20.74 E-value=2.8e+02 Score=26.84 Aligned_cols=122 Identities=12% Similarity=0.139 Sum_probs=65.5
Q ss_pred HHH-HHHHcCCcceEecCCCCHHHHH-HHHHhCCCCc-eeeccccChhhhhHHHHHHHHhcCCeE---EEeccCCcCCCC
Q 020174 160 AME-ECQRHGLTKSIGVSNFSPKKIE-TILAFATIPP-TVNQVEMNPAWQQRKLVEFCKSKSIIV---TAFSPLGAVGSS 233 (330)
Q Consensus 160 ~L~-~l~~~GkIr~iGvs~~~~~~l~-~~~~~~~~~~-~~~q~~~~~~~~~~~~l~~~~~~gi~v---ia~~~l~~~G~l 233 (330)
++- ++.++-.||.+|+-.-+...+. ++.+..+.+. ..+-+-+++. ...-=-|.++|..| +++.||. |+.
T Consensus 167 alP~~~~~~~~iRryGFHGlS~~~va~~~a~~lg~~~~~~~~Iv~HLG---~G~Si~Ai~~GksvDTsmG~tpLe--Gl~ 241 (404)
T TIGR00016 167 ALPYSWYKNHGIRRYGFHGTSHKYVTQRAAKILNKPLDDLNLIVCHLG---NGASVCAVKNGKSIDTSMGFTPLE--GLM 241 (404)
T ss_pred CCCHHHHHhcCceEeeehHHHHHHHHHHHHHHhCCChhHcCEEEEEeC---CCceeeeeeCCEEEEeCCCCCCcc--CCC
Confidence 444 6677767888888766644433 2222221110 1111111111 11111234455544 3445554 333
Q ss_pred CC-CCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCCEEeeC-CCCHHHHHHhhc
Q 020174 234 WG-TNQVMNNEALKQIAAAHGKTVAQVCLRWIIEQGATAAVK-SFNKERLKENLE 286 (330)
Q Consensus 234 ~~-~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~~~i~g-~~~~~~l~~nl~ 286 (330)
-+ ...-++...+..++++.+.|+.++--.-.-+.|..-+.| +++..++.+..+
T Consensus 242 mgtRsG~lDp~~~~~l~~~~~~s~~e~~~~Ln~~SGLlg~sG~s~D~Rel~~~~~ 296 (404)
T TIGR00016 242 MGTRSGDIDPAIISYLAETLGMSADDIENTLNKKSGLLGISGLSSDLRDIEDAYA 296 (404)
T ss_pred CCCCCCCCChHHHHHHHHhcCCCHHHHHHHHhhcccceEecCCCCCHHHHHHHHH
Confidence 22 223456778889999999999986544444445677789 888888876553
No 218
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=20.72 E-value=3.1e+02 Score=20.93 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=31.0
Q ss_pred cCCCCHHHHHHHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEeccCC
Q 020174 175 VSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLG 228 (330)
Q Consensus 175 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~ 228 (330)
.+..+.+.+..++......+.++-+--+......++.+.++++||++..+..-+
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~a 89 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTGA 89 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcHH
Confidence 444556666666554312233333333333334678888899999888876554
No 219
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=20.69 E-value=6.8e+02 Score=23.15 Aligned_cols=74 Identities=14% Similarity=0.026 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHcCCcceEecCC---------CCHHHHHHHHHhCCCCceeeccccChhh---h-hHHHHHHHHhcCCe
Q 020174 154 YNGVWEAMEECQRHGLTKSIGVSN---------FSPKKIETILAFATIPPTVNQVEMNPAW---Q-QRKLVEFCKSKSII 220 (330)
Q Consensus 154 ~~~~~~~L~~l~~~GkIr~iGvs~---------~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~-~~~~l~~~~~~gi~ 220 (330)
...+.+.++++++.|.++.+.+.+ .+.+.++.+.+.+ .. ..+.++.+... . -.+.++.+++.||.
T Consensus 152 ~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g-~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~ 229 (321)
T TIGR03822 152 PRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSG-KT-VYVALHANHARELTAEARAACARLIDAGIP 229 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcC-Cc-EEEEecCCChhhcCHHHHHHHHHHHHcCCE
Confidence 346677788888888776444432 2344444444433 22 33444443221 1 14678889999999
Q ss_pred EEEeccCCc
Q 020174 221 VTAFSPLGA 229 (330)
Q Consensus 221 via~~~l~~ 229 (330)
+....++..
T Consensus 230 v~~q~vLl~ 238 (321)
T TIGR03822 230 MVSQSVLLR 238 (321)
T ss_pred EEEEeeEeC
Confidence 999888865
No 220
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=20.69 E-value=1.5e+02 Score=25.92 Aligned_cols=76 Identities=20% Similarity=0.205 Sum_probs=46.1
Q ss_pred cCccceeccccCCChhHHHHHHHHHHHcCCCeEeCCCCcC----CHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCC
Q 020174 28 MPVIGLGSAVDNIDESAMKSAVLESIKLGYRHFDTASLYG----TERALGEAIAEALKLGLVASREELFITTKLWCSDAH 103 (330)
Q Consensus 28 vs~lglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg----se~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~ 103 (330)
.+.||||..++. .+.-+.+++.++.+=-..+.|- ++..|-+++.+. .-+.++|--| .-
T Consensus 131 ~~~ig~GG~HYa------pr~t~~~l~~~~~~GHi~~ky~l~~l~~~~l~~a~~~s-------~~~~a~id~K-----~l 192 (213)
T PF04414_consen 131 PVAIGFGGGHYA------PRFTKLALETEYAFGHIIPKYALDELDEDVLRQAIEKS-------GADVAIIDWK-----SL 192 (213)
T ss_dssp EEEEEE-S-TT-------HHHHHHHHHCSEEEEEEE-GGGGGG--HHHHHHHHCHC-------T-SEEEEETT-----TS
T ss_pred ceeEEecCcccc------hhhhhhhhcCCeEEEeeccCcchhhcCHHHHHHHHHhC-------CCcEEEEecC-----CC
Confidence 678999998863 4556667787766545556663 566777777653 2233444433 23
Q ss_pred hhhHHHHHHHHHhhcCCC
Q 020174 104 RDLVVPALKKSLKTLQIE 121 (330)
Q Consensus 104 ~~~i~~~le~sL~~Lg~d 121 (330)
+...++.+++.|+.+|+.
T Consensus 193 ~~~~r~~i~~~l~~~gi~ 210 (213)
T PF04414_consen 193 KSEDRRRIEELLEELGIE 210 (213)
T ss_dssp -HHHHHHHHHHHHHHT-E
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 578899999999999975
No 221
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.68 E-value=7.2e+02 Score=23.41 Aligned_cols=148 Identities=12% Similarity=0.138 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHhc-CCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhcC-CCccceEEeecCCCCCCCccccCCCC
Q 020174 68 TERALGEAIAEALKL-GLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQ-IEYVDLYLIHWPMSAKPSEKLRNDIP 145 (330)
Q Consensus 68 se~~lG~~l~~~~~~-g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~~ 145 (330)
+-..+-++++..-.. |+ ....+.|+|- +. ...+++-.+.-+++|| .+....+-||.++......-++ ..
T Consensus 163 n~~~v~~~i~~l~~~~~i--~~r~itvST~-G~----~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p--~~ 233 (345)
T PRK14457 163 NIDEVLAAIRCLNQDLGI--GQRRITVSTV-GV----PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIP--SA 233 (345)
T ss_pred CHHHHHHHHHHHhcccCC--ccCceEEECC-Cc----hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcC--Cc
Confidence 455566777654221 43 3345677773 21 2334433343344443 2445778899987544322111 00
Q ss_pred ccccccccHHHHHHHHHH-HHHcCC---cceEecCCC--CHHHHHHHHHhC-CCCceeeccccChhhhh----------H
Q 020174 146 EEDLVSLDYNGVWEAMEE-CQRHGL---TKSIGVSNF--SPKKIETILAFA-TIPPTVNQVEMNPAWQQ----------R 208 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~L~~-l~~~Gk---Ir~iGvs~~--~~~~l~~~~~~~-~~~~~~~q~~~~~~~~~----------~ 208 (330)
....++++++++.+ +.+.|+ |+++=+.++ +.+.++++.+.. .+++.++-++||+.... .
T Consensus 234 ----~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~ 309 (345)
T PRK14457 234 ----KNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQ 309 (345)
T ss_pred ----cCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHH
Confidence 12346777777755 455564 666666544 456666665543 24455666777775321 3
Q ss_pred HHHHHHHhcCCeEEEeccCC
Q 020174 209 KLVEFCKSKSIIVTAFSPLG 228 (330)
Q Consensus 209 ~~l~~~~~~gi~via~~~l~ 228 (330)
.+.+..+++|+.+......+
T Consensus 310 ~f~~~L~~~Gi~vtvR~~~G 329 (345)
T PRK14457 310 AFQRVLEQRGVAVSVRASRG 329 (345)
T ss_pred HHHHHHHHCCCeEEEeCCCC
Confidence 45566777888888776665
No 222
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=20.65 E-value=3.6e+02 Score=21.35 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCCeE--------eCCCCcCCH------HHHHHHHHHHHhcCCCCCCCceE
Q 020174 47 SAVLESIKLGYRHF--------DTASLYGTE------RALGEAIAEALKLGLVASREELF 92 (330)
Q Consensus 47 ~~l~~A~~~Gi~~~--------DtA~~Ygse------~~lG~~l~~~~~~g~~~~R~~v~ 92 (330)
..+.+|+..|+.-+ |+...+||+ +++.+.|.+. |+ .++.+.
T Consensus 44 ~fvl~Al~~GaDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~el---gi--e~eRv~ 98 (132)
T COG1908 44 EFVLKALRKGADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKEL---GI--EPERVR 98 (132)
T ss_pred HHHHHHHHcCCCeEEEecccccceeeeccchHHHHHHHHHHHHHHHh---CC--CcceEE
Confidence 55677888777632 444455643 4667777777 77 455443
No 223
>PRK10060 RNase II stability modulator; Provisional
Probab=20.55 E-value=9.3e+02 Score=24.71 Aligned_cols=114 Identities=15% Similarity=0.207 Sum_probs=70.3
Q ss_pred ceEEEeecCCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCC
Q 020174 90 ELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL 169 (330)
Q Consensus 90 ~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 169 (330)
.+.|+..+.........+...+.+.|++.++.. ..+.+--..... ......+.+.+.+|++.|-
T Consensus 492 ~~~i~vNls~~~l~~~~~~~~l~~~l~~~~~~~-~~l~lEitE~~~---------------~~~~~~~~~~l~~L~~~G~ 555 (663)
T PRK10060 492 NLRVAVNVSARQLADQTIFTALKQALQELNFEY-CPIDVELTESCL---------------IENEELALSVIQQFSQLGA 555 (663)
T ss_pred CeEEEEEcCHHHhCCCcHHHHHHHHHHHHCcCc-ceEEEEECCchh---------------hcCHHHHHHHHHHHHHCCC
Confidence 455666665544445678888999999988653 444443332111 1125677889999999997
Q ss_pred cceEecCCCC--HHHHHHHHHhCCCCceeeccccChhh--------hh--HHHHHHHHhcCCeEEEe
Q 020174 170 TKSIGVSNFS--PKKIETILAFATIPPTVNQVEMNPAW--------QQ--RKLVEFCKSKSIIVTAF 224 (330)
Q Consensus 170 Ir~iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~--------~~--~~~l~~~~~~gi~via~ 224 (330)
.|++.+|. ...+..+.. ++++.+-+.-+... +. +.++.+|+..|+.++|-
T Consensus 556 --~ialDdfGtg~ssl~~L~~---l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAe 617 (663)
T PRK10060 556 --QVHLDDFGTGYSSLSQLAR---FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAE 617 (663)
T ss_pred --EEEEECCCCchhhHHHHHh---CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEe
Confidence 56666665 333444433 24445444432221 11 56899999999999993
No 224
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=20.52 E-value=7.3e+02 Score=23.42 Aligned_cols=92 Identities=11% Similarity=0.167 Sum_probs=56.5
Q ss_pred HHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcC-CcceEecCCCCHHHHHHH
Q 020174 108 VPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHG-LTKSIGVSNFSPKKIETI 186 (330)
Q Consensus 108 ~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-kIr~iGvs~~~~~~l~~~ 186 (330)
+..+-+.|.++|+++|.+- +|.. -+.-++.+.++.+.+ ..+..+++....+.++.+
T Consensus 25 k~~ia~~L~~~Gv~~IEvG---~p~~--------------------~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a 81 (365)
T TIGR02660 25 KLAIARALDEAGVDELEVG---IPAM--------------------GEEERAVIRAIVALGLPARLMAWCRARDADIEAA 81 (365)
T ss_pred HHHHHHHHHHcCCCEEEEe---CCCC--------------------CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHH
Confidence 4456677999999988884 3321 123356667776664 367777776678888877
Q ss_pred HHhCCCCceeeccccChhhhh--------------HHHHHHHHhcCCeEEE
Q 020174 187 LAFATIPPTVNQVEMNPAWQQ--------------RKLVEFCKSKSIIVTA 223 (330)
Q Consensus 187 ~~~~~~~~~~~q~~~~~~~~~--------------~~~l~~~~~~gi~via 223 (330)
.+.+ ++.+.+-+..|....+ .+.+++++++|..+..
T Consensus 82 ~~~g-~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~ 131 (365)
T TIGR02660 82 ARCG-VDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSV 131 (365)
T ss_pred HcCC-cCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 7653 3333333333332111 3678899999987653
No 225
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=20.43 E-value=7.1e+02 Score=23.63 Aligned_cols=72 Identities=10% Similarity=0.126 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCceeeccccChhhh---hHHHHHHHHhcCCeEEEeccCCc
Q 020174 157 VWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQ---QRKLVEFCKSKSIIVTAFSPLGA 229 (330)
Q Consensus 157 ~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~~l~~~~~~gi~via~~~l~~ 229 (330)
....+..+...+.+...-+...+.+.++++++. +.+.+++..+-|+... -+++.+.|+++|+.++.=..++.
T Consensus 104 ~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~-~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~ 178 (386)
T PRK08045 104 SYRLFDSLAKRGCYRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLS 178 (386)
T ss_pred HHHHHHHHHhhCCeEEEEeCCCCHHHHHHhccc-CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCc
Confidence 344445554444333333344567777766543 3345566566666422 27889999999999987666653
No 226
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=20.41 E-value=8e+02 Score=23.86 Aligned_cols=146 Identities=16% Similarity=0.044 Sum_probs=78.8
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCC-CceEEEeecCCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccC
Q 020174 64 SLYGTERALGEAIAEALKLGLVASR-EELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRN 142 (330)
Q Consensus 64 ~~Ygse~~lG~~l~~~~~~g~~~~R-~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~ 142 (330)
-.||.++-+-++|++..+.. ++ +-++|.|-... ..--+.+..-+++.-++++ +.++.+|.|.......
T Consensus 97 ~V~Gg~~~L~~aI~~~~~~~---~p~~~I~V~~tC~~-~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~---- 165 (443)
T TIGR01862 97 IVFGGEKKLKKLIHEAFTEF---PLIKAISVYATCPT-GLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQ---- 165 (443)
T ss_pred eeeCcHHHHHHHHHHHHHhC---CccceEEEECCChH-HHhccCHHHHHHHHHHhcC---CCEEEEecCCccCCcc----
Confidence 45888888888988876543 34 55666665422 2223444444444434444 6899999987643211
Q ss_pred CCCccccccccHHHHHHH-HHHHH--------HcCCcceEecCCC--CHHHHHHHHHhCCCCceeecccc----------
Q 020174 143 DIPEEDLVSLDYNGVWEA-MEECQ--------RHGLTKSIGVSNF--SPKKIETILAFATIPPTVNQVEM---------- 201 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~-L~~l~--------~~GkIr~iGvs~~--~~~~l~~~~~~~~~~~~~~q~~~---------- 201 (330)
......+.++ ++.+. ++++|.-||-.++ +.+.+.++++..++++...-...
T Consensus 166 --------~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~ 237 (443)
T TIGR01862 166 --------SKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMH 237 (443)
T ss_pred --------chHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcc
Confidence 0011222232 23333 2467888885554 35678888888776654321111
Q ss_pred ----Chh-hhh--HHHHHH-HHhcCCeEEEeccCC
Q 020174 202 ----NPA-WQQ--RKLVEF-CKSKSIIVTAFSPLG 228 (330)
Q Consensus 202 ----~~~-~~~--~~~l~~-~~~~gi~via~~~l~ 228 (330)
|+. .+. ....++ .++.|++++...|++
T Consensus 238 ~A~lniv~~~~~~~~~A~~L~er~GiP~~~~~p~G 272 (443)
T TIGR01862 238 KAKLNLVHCARSANYIANELEERYGIPWMKIDFFG 272 (443)
T ss_pred cCCEEEEEChHHHHHHHHHHHHHhCCCeEecccCC
Confidence 111 111 122333 356699999887653
No 227
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=20.36 E-value=3.8e+02 Score=20.05 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=39.2
Q ss_pred HHHHHHcCCcceEecCCCCHHH---HHHHHHhCCCCceeeccccChhhhh-HHHHHHHHhcCCeEEE
Q 020174 161 MEECQRHGLTKSIGVSNFSPKK---IETILAFATIPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVTA 223 (330)
Q Consensus 161 L~~l~~~GkIr~iGvs~~~~~~---l~~~~~~~~~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~via 223 (330)
++++.+...+..+-+++-+..+ +..+++.+. .++..=++.....+ .++++.|+++|+.++.
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSSHAEIAKKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 4455556688888888766433 445555543 44555555443333 7899999999988754
No 228
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=20.36 E-value=4.7e+02 Score=21.68 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=51.5
Q ss_pred CcceEecCCCCHHHHH------HHHHhC-CCCceeeccccChhhhh---------------HHHHHHHHhcCCeEEEecc
Q 020174 169 LTKSIGVSNFSPKKIE------TILAFA-TIPPTVNQVEMNPAWQQ---------------RKLVEFCKSKSIIVTAFSP 226 (330)
Q Consensus 169 kIr~iGvs~~~~~~l~------~~~~~~-~~~~~~~q~~~~~~~~~---------------~~~l~~~~~~gi~via~~~ 226 (330)
.|...|+++.+..++. .++... ..+.+++++-.|-.... ..+++.++++|+.++..+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 5667788888766432 333322 34556666655543220 4688889999999988887
Q ss_pred CCcCCCCCCC--CCC--CChHHHHHHHHHhCCCH
Q 020174 227 LGAVGSSWGT--NQV--MNNEALKQIAAAHGKTV 256 (330)
Q Consensus 227 l~~~G~l~~~--~~~--~~~~~l~~la~~~~~s~ 256 (330)
.......... ... .-++.++++|+++++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 116 VTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred ccccccCCCCcccccchhHHHHHHHHHHHhCCCE
Confidence 6531111110 001 11467888888888653
No 229
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=20.27 E-value=6.5e+02 Score=25.57 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=68.6
Q ss_pred eEEEeecCCCCCChhhHHHHHHHHHhhcCCCccceEEeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHcCCc
Q 020174 91 LFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLT 170 (330)
Q Consensus 91 v~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~GkI 170 (330)
..|+-.+.+.......+...+.+.++..+.. .+-+.+--+.... ..+.+.+...+..|++.|-
T Consensus 491 ~~l~iNls~~~l~~~~f~~~l~~~l~~~~~~-~~~l~lEi~E~~~---------------~~~~~~~~~~~~~l~~~G~- 553 (660)
T PRK11829 491 LPLSVNISGLQVQNKQFLPHLKTLISHYHID-PQQLLLEITETAQ---------------IQDLDEALRLLRELQGLGL- 553 (660)
T ss_pred ceEEEEeCHHHHCCchHHHHHHHHHHHcCcC-hhhEEEEEcCchh---------------hcCHHHHHHHHHHHHhCCC-
Confidence 4455555443333456778888888888864 3455555443211 1225678889999999997
Q ss_pred ceEecCCCCH--HHHHHHHHhCCCCceeeccccChhhh-------hHHHHHHHHhcCCeEEEe
Q 020174 171 KSIGVSNFSP--KKIETILAFATIPPTVNQVEMNPAWQ-------QRKLVEFCKSKSIIVTAF 224 (330)
Q Consensus 171 r~iGvs~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~~-------~~~~l~~~~~~gi~via~ 224 (330)
.|++.+|.. ..+..+.....++++++-+.-+.... .+.+...|+..|+.++|-
T Consensus 554 -~ialDdfG~g~ss~~~L~~~~~l~~d~iKid~~~~~~~~~~~~~~~~i~~~a~~l~~~viae 615 (660)
T PRK11829 554 -LIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVMAE 615 (660)
T ss_pred -EEEEECCCCchhhHHHHhccCCCCCcEEEECHHHHhcccCCHHHHHHHHHHHHHcCCeEEEe
Confidence 577776652 33333333111455555444332211 145677899999999883
No 230
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=20.21 E-value=8.2e+02 Score=23.93 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=58.4
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCCceEEEeecCCCCCChhhHHHHHHHHHhhcC-CCccceEEeecCCCCCCCccccC
Q 020174 64 SLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQ-IEYVDLYLIHWPMSAKPSEKLRN 142 (330)
Q Consensus 64 ~~Ygse~~lG~~l~~~~~~g~~~~R~~v~I~tK~~~~~~~~~~i~~~le~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~ 142 (330)
-.||.++.+-++|++..+.- +.+=++|.|-.-.. .--+.+..-+++.-++.. ..-+.++.++.|.......
T Consensus 72 ~VfGg~~~L~~aI~~~~~~~---~P~~I~V~ttC~~e-iIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~---- 143 (455)
T PRK14476 72 TILGGDENVEEAILNICKKA---KPKIIGLCTTGLTE-TRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGALE---- 143 (455)
T ss_pred eEeCCHHHHHHHHHHHHHhh---CCCEEEEeCcchHh-hhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcHH----
Confidence 46888888888888765432 34556666554211 111222222222222221 1135788899987533210
Q ss_pred CCCccccccccHHHHHHHHHH-HH--------HcCCcceEecCCC---CHHHHHHHHHhCCCCc
Q 020174 143 DIPEEDLVSLDYNGVWEAMEE-CQ--------RHGLTKSIGVSNF---SPKKIETILAFATIPP 194 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~L~~-l~--------~~GkIr~iGvs~~---~~~~l~~~~~~~~~~~ 194 (330)
.-.+.++.+|.+ +. ++++|.-||-+++ +.+.+.++++..++.+
T Consensus 144 ---------~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v 198 (455)
T PRK14476 144 ---------DGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEP 198 (455)
T ss_pred ---------HHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCce
Confidence 112233333322 21 3456888875433 4677788887776655
No 231
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=20.14 E-value=8.3e+02 Score=23.96 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCccceE---------EeecCCCCCCCccccCCCCccccccccHHHHHHHHHHHHHc-CCcce-----
Q 020174 108 VPALKKSLKTLQIEYVDLY---------LIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRH-GLTKS----- 172 (330)
Q Consensus 108 ~~~le~sL~~Lg~d~iDl~---------~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-GkIr~----- 172 (330)
+..+-+.|.++|++.|.+. -+..+ ..|+.+..+++. ..++.
T Consensus 28 kl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e------------------------~p~e~l~~l~~~~~~~~l~~l~r 83 (448)
T PRK12331 28 MLPILEKLDNAGYHSLEMWGGATFDACLRFLNE------------------------DPWERLRKIRKAVKKTKLQMLLR 83 (448)
T ss_pred HHHHHHHHHHcCCCEEEecCCccchhhhccCCC------------------------CHHHHHHHHHHhCCCCEEEEEec
Q ss_pred ----EecCCCCHHHHH---HHHHhCCCCceeeccccChhhhhHHHHHHHHhcCCeEEEeccCCcCCCCCCCCCCCChHHH
Q 020174 173 ----IGVSNFSPKKIE---TILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEAL 245 (330)
Q Consensus 173 ----iGvs~~~~~~l~---~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l 245 (330)
+|.+++..+.+. +.....+++..-+-...|....-.+.+++++++|..+.+.-.... ......+.+
T Consensus 84 ~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~-------~p~~~~~~~ 156 (448)
T PRK12331 84 GQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTT-------SPVHTIDYF 156 (448)
T ss_pred cccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeec-------CCCCCHHHH
Q ss_pred HHHHHHh
Q 020174 246 KQIAAAH 252 (330)
Q Consensus 246 ~~la~~~ 252 (330)
.+++++.
T Consensus 157 ~~~a~~l 163 (448)
T PRK12331 157 VKLAKEM 163 (448)
T ss_pred HHHHHHH
No 232
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=20.11 E-value=3.7e+02 Score=23.93 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHcCCCe
Q 020174 43 SAMKSAVLESIKLGYRH 59 (330)
Q Consensus 43 ~~~~~~l~~A~~~Gi~~ 59 (330)
+.....++.+.+.||.+
T Consensus 68 ~~~~~~l~~~~~~giPv 84 (302)
T TIGR02637 68 DALVPALKKAMKRGIKV 84 (302)
T ss_pred HHHHHHHHHHHHCCCEE
Confidence 44456677788888764
No 233
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=20.07 E-value=2.6e+02 Score=21.77 Aligned_cols=42 Identities=26% Similarity=0.508 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHHHhCCCCce
Q 020174 154 YNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPT 195 (330)
Q Consensus 154 ~~~~~~~L~~l~~~GkIr~iGvs~~~~~~l~~~~~~~~~~~~ 195 (330)
.+.+.+.++.+.+.|+---+|.+.|+.++++++.+.+.--++
T Consensus 77 p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~v 118 (124)
T PF01113_consen 77 PDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPV 118 (124)
T ss_dssp HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEE
T ss_pred hHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCE
Confidence 567788999999999999999999999998888776653333
Done!