Query 020175
Match_columns 330
No_of_seqs 199 out of 432
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 07:38:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 1.4E-24 3E-29 160.7 7.1 50 134-183 1-50 (51)
2 PLN03162 golden-2 like transcr 99.9 5.2E-24 1.1E-28 208.5 7.4 63 45-108 231-293 (526)
3 TIGR01557 myb_SHAQKYF myb-like 99.9 5.3E-22 1.1E-26 148.4 6.4 56 49-104 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.5 0.00019 4.1E-09 50.6 4.8 48 51-102 1-48 (48)
5 PF14379 Myb_CC_LHEQLE: MYB-CC 90.5 0.54 1.2E-05 35.6 4.5 34 147-181 4-37 (51)
6 smart00426 TEA TEA domain. 89.4 0.44 9.4E-06 38.0 3.4 46 53-100 5-67 (68)
7 smart00717 SANT SANT SWI3, AD 80.9 4.4 9.6E-05 26.4 4.6 44 52-101 2-46 (49)
8 PF01519 DUF16: Protein of unk 77.4 8 0.00017 33.1 6.1 33 150-185 64-96 (102)
9 cd00167 SANT 'SWI3, ADA2, N-Co 77.0 6.3 0.00014 25.4 4.4 43 53-101 1-44 (45)
10 PF15235 GRIN_C: G protein-reg 75.3 2 4.4E-05 38.3 2.1 19 156-174 71-89 (137)
11 TIGR02894 DNA_bind_RsfA transc 61.7 40 0.00086 31.0 7.4 51 46-102 43-93 (161)
12 PF12776 Myb_DNA-bind_3: Myb/S 59.3 23 0.00051 27.3 4.9 51 53-103 1-63 (96)
13 PF01285 TEA: TEA/ATTS domain 55.5 13 0.00028 38.2 3.6 55 47-101 45-112 (431)
14 COG5665 NOT5 CCR4-NOT transcri 48.1 80 0.0017 33.2 7.9 25 145-171 122-146 (548)
15 PRK10803 tol-pal system protei 47.2 56 0.0012 31.0 6.3 42 142-183 54-95 (263)
16 smart00501 BRIGHT BRIGHT, ARID 46.0 20 0.00044 28.3 2.7 46 57-103 33-85 (93)
17 PF10224 DUF2205: Predicted co 35.6 2.3E+02 0.0049 23.2 7.2 41 138-179 23-63 (80)
18 PF07384 DUF1497: Protein of u 29.5 45 0.00098 25.9 2.2 22 52-73 36-57 (59)
19 PF11365 DUF3166: Protein of u 29.1 1.8E+02 0.004 24.6 5.9 33 153-185 15-47 (96)
20 PF08127 Propeptide_C1: Peptid 28.1 25 0.00054 25.2 0.6 35 58-99 1-35 (41)
21 KOG3841 TEF-1 and related tran 26.7 69 0.0015 33.4 3.5 51 50-102 75-142 (455)
22 cd07645 I-BAR_IMD_BAIAP2L1 Inv 25.0 2.9E+02 0.0063 26.8 7.1 45 134-178 63-116 (226)
23 cd07646 I-BAR_IMD_IRSp53 Inver 24.5 3E+02 0.0066 26.7 7.2 45 134-178 65-118 (232)
24 PHA02602 56 dCTP pyrophosphata 23.0 70 0.0015 29.8 2.5 17 149-165 30-46 (172)
25 KOG4721 Serine/threonine prote 21.0 5.5E+02 0.012 29.0 9.0 38 139-176 404-453 (904)
No 1
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.91 E-value=1.4e-24 Score=160.71 Aligned_cols=50 Identities=76% Similarity=1.068 Sum_probs=47.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Q 020175 134 GMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLS 183 (330)
Q Consensus 134 ~~qitEALrlQmEVQkrLhEQLEVQR~LQlRIEAQGKYLqsiLEkqq~l~ 183 (330)
||+|+|||++||||||||||||||||+||+|||||||||++|||+|++..
T Consensus 1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~ 50 (51)
T PF14379_consen 1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKAL 50 (51)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999998753
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.89 E-value=5.2e-24 Score=208.53 Aligned_cols=63 Identities=48% Similarity=0.699 Sum_probs=59.1
Q ss_pred CCCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhhhhhccCC
Q 020175 45 SLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP 108 (330)
Q Consensus 45 ~~~~K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~p 108 (330)
...+|+||+||+|||+|||+||++|| .++||||+||++|+|+|||++||||||||||+.++..
T Consensus 231 ~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l 293 (526)
T PLN03162 231 PGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHL 293 (526)
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccc
Confidence 35689999999999999999999999 7999999999999999999999999999999987653
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.86 E-value=5.3e-22 Score=148.38 Aligned_cols=56 Identities=61% Similarity=0.981 Sum_probs=54.3
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhhhhh
Q 020175 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA 104 (330)
Q Consensus 49 K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~ 104 (330)
|+|++||+|+|++|++||+.||+.+.||||.|+++|++++||+.||+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 78999999999999999999998899999999999999999999999999999985
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.51 E-value=0.00019 Score=50.63 Aligned_cols=48 Identities=29% Similarity=0.391 Sum_probs=41.1
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhhh
Q 020175 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102 (330)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 102 (330)
|-.||++-+..|++||.++|.- .-+.|.+.|+ .+-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 5689999999999999999932 5678999999 8999999999999985
No 5
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=90.52 E-value=0.54 Score=35.61 Aligned_cols=34 Identities=38% Similarity=0.533 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020175 147 VQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQR 181 (330)
Q Consensus 147 VQkrLhEQLEVQR~LQlRIEAQGKYLqsiLEkqq~ 181 (330)
+-.-|..|+||||+|.=.+|.| |-||.-+|.+.+
T Consensus 4 i~EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgk 37 (51)
T PF14379_consen 4 ITEALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGK 37 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH
Confidence 3456788999999999999988 567766776654
No 6
>smart00426 TEA TEA domain.
Probab=89.41 E-value=0.44 Score=38.00 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=29.8
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCCch-hhhhh---cC-----------CCCc--cHHHHHHHHHh
Q 020175 53 RWTHELHERFVDAVAQLGGPDRATPK-GVLRV---MG-----------VQGL--TIYHVKSHLQK 100 (330)
Q Consensus 53 rWT~ELH~rFV~AV~qLGG~dkAtPK-~IL~l---M~-----------V~GL--T~~hVKSHLQK 100 (330)
.|.++|-..|++|+..+- ...+=| +++.. .| ..|. |..+|.||||.
T Consensus 5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv 67 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 67 (68)
T ss_pred cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence 699999999999998874 222222 22211 11 1443 77789999985
No 7
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=80.90 E-value=4.4 Score=26.45 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=34.2
Q ss_pred cccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHhh
Q 020175 52 LRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (330)
Q Consensus 52 lrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (330)
-.||++=...|+.++.++| +-. +.|-+.|+ +-|..+|+.+...+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w----~~Ia~~~~--~rt~~~~~~~~~~~ 46 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNW----EKIAKELP--GRTAEQCRERWNNL 46 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCH----HHHHHHcC--CCCHHHHHHHHHHH
Confidence 4699999999999999999 433 46666665 77888888775543
No 8
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=77.37 E-value=8 Score=33.08 Aligned_cols=33 Identities=33% Similarity=0.478 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccc
Q 020175 150 RLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGV 185 (330)
Q Consensus 150 rLhEQLEVQR~LQlRIEAQGKYLqsiLEkqq~l~g~ 185 (330)
++-||+ +.||.+|.+||+-|++|++.-+.+...
T Consensus 64 ~QGEqI---kel~~e~k~qgktL~~I~~~L~~inkR 96 (102)
T PF01519_consen 64 KQGEQI---KELQVEQKAQGKTLQLILKTLQSINKR 96 (102)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554 889999999999999999876655543
No 9
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=76.97 E-value=6.3 Score=25.45 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=33.5
Q ss_pred ccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHhh
Q 020175 53 RWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (330)
Q Consensus 53 rWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (330)
.||.+=+..|+.++.++| +. =+.|-+.|+ +=|..+|+.|..++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~----w~~Ia~~~~--~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNN----WEKIAKELP--GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCC----HHHHHhHcC--CCCHHHHHHHHHHh
Confidence 499999999999999999 43 346777764 47888888876553
No 10
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=75.29 E-value=2 Score=38.27 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 020175 156 EVQRQLQLRIEAQGKYLKK 174 (330)
Q Consensus 156 EVQR~LQlRIEAQGKYLqs 174 (330)
.||+||+++||+|++.+..
T Consensus 71 AIQkHLE~qi~e~~~q~~~ 89 (137)
T PF15235_consen 71 AIQKHLERQIEEHERQRAP 89 (137)
T ss_pred HHHHHHHHHHHHhhhcccc
Confidence 4799999999999875543
No 11
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=61.72 E-value=40 Score=30.95 Aligned_cols=51 Identities=24% Similarity=0.345 Sum_probs=38.1
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhhh
Q 020175 46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102 (330)
Q Consensus 46 ~~~K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 102 (330)
++....|||+..+...+.+||...- -.+-.++.. ...||+.+|-+-||.|.
T Consensus 43 TsAACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~ 93 (161)
T TIGR02894 43 TAAACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLK 93 (161)
T ss_pred cHHHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHH
Confidence 4567899999999999999998643 122222221 25699999999999987
No 12
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=59.34 E-value=23 Score=27.26 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=33.1
Q ss_pred ccCHHHHHHHHHHHHHh---CCC-CCCCch-----hhhhhcCC---CCccHHHHHHHHHhhhh
Q 020175 53 RWTHELHERFVDAVAQL---GGP-DRATPK-----GVLRVMGV---QGLTIYHVKSHLQKYRL 103 (330)
Q Consensus 53 rWT~ELH~rFV~AV~qL---GG~-dkAtPK-----~IL~lM~V---~GLT~~hVKSHLQKYRl 103 (330)
+||++..+-||+.+-+. |.- .....| .|.+.|+- -.+|..||++|+...|-
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988433 433 123332 35555552 45688999999875543
No 13
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=55.49 E-value=13 Score=38.24 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=29.3
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCCch----------hhhhhcCC-CC--ccHHHHHHHHHhh
Q 020175 47 ASKQRLRWTHELHERFVDAVAQLGGPDRATPK----------GVLRVMGV-QG--LTIYHVKSHLQKY 101 (330)
Q Consensus 47 ~~K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK----------~IL~lM~V-~G--LT~~hVKSHLQKY 101 (330)
..+..-+|.+++...|++|+...-=..+..-+ -|-+.+.. -| =|+.+|.||+|..
T Consensus 45 ~~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 45 DGDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp -GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 35778899999999999999776311122210 11111111 23 3777999999998
No 14
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=48.12 E-value=80 Score=33.19 Aligned_cols=25 Identities=36% Similarity=0.307 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 020175 145 MEVQKRLHEQLEVQRQLQLRIEAQGKY 171 (330)
Q Consensus 145 mEVQkrLhEQLEVQR~LQlRIEAQGKY 171 (330)
-|+||+| ||+|.| .|.-|||.|--.
T Consensus 122 ~el~~q~-e~~ea~-e~e~~~erh~~h 146 (548)
T COG5665 122 DELQKQL-EQYEAQ-ENEEQTERHEFH 146 (548)
T ss_pred HHHHHHH-HHHHHH-HhHHHHHHHHHH
Confidence 3788887 888888 788899887543
No 15
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=47.22 E-value=56 Score=31.01 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Q 020175 142 KLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLS 183 (330)
Q Consensus 142 rlQmEVQkrLhEQLEVQR~LQlRIEAQGKYLqsiLEkqq~l~ 183 (330)
++|+|+|.+|.+.=.=-+.|.=.||.+..-|+.|.++|+.+.
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y 95 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIY 95 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 456777777754322235678899999999999999887654
No 16
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=46.04 E-value=20 Score=28.30 Aligned_cols=46 Identities=26% Similarity=0.448 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCCCCCCC----chhhhhhcCCCCc---cHHHHHHHHHhhhh
Q 020175 57 ELHERFVDAVAQLGGPDRAT----PKGVLRVMGVQGL---TIYHVKSHLQKYRL 103 (330)
Q Consensus 57 ELH~rFV~AV~qLGG~dkAt----PK~IL~lM~V~GL---T~~hVKSHLQKYRl 103 (330)
+|++-|. +|..+||.+..+ =+.|.+.||++.- ...++|+|-+||=+
T Consensus 33 dL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~ 85 (93)
T smart00501 33 DLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLL 85 (93)
T ss_pred cHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhH
Confidence 7899898 599999986543 3568888998752 35578888888743
No 17
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=35.65 E-value=2.3e+02 Score=23.22 Aligned_cols=41 Identities=24% Similarity=0.445 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020175 138 TEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQ 179 (330)
Q Consensus 138 tEALrlQmEVQkrLhEQLEVQR~LQlRIEAQGKYLqsiLEkq 179 (330)
.+++.+|--++- |-..++..+..--.++...+|||..+..-
T Consensus 23 ~ei~~LQ~sL~~-L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 23 QEILELQDSLEA-LSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444545444432 33556677777778889999999998754
No 18
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=29.50 E-value=45 Score=25.87 Aligned_cols=22 Identities=23% Similarity=0.653 Sum_probs=19.1
Q ss_pred cccCHHHHHHHHHHHHHhCCCC
Q 020175 52 LRWTHELHERFVDAVAQLGGPD 73 (330)
Q Consensus 52 lrWT~ELH~rFV~AV~qLGG~d 73 (330)
-.+..|+|..|-+-|..|||-.
T Consensus 36 ~kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 36 NKFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred hHhhHHHHHHHHHHHHHhcccc
Confidence 3578999999999999999843
No 19
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=29.14 E-value=1.8e+02 Score=24.60 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccc
Q 020175 153 EQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGV 185 (330)
Q Consensus 153 EQLEVQR~LQlRIEAQGKYLqsiLEkqq~l~g~ 185 (330)
|..++=|.==..||.|.+-|..=|.+-+...|-
T Consensus 15 EEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~ 47 (96)
T PF11365_consen 15 EEAELLRRKLSELEDENKQLTEELNKYKSKYGD 47 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 444455555558999999888877665544443
No 20
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=28.13 E-value=25 Score=25.21 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHH
Q 020175 58 LHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQ 99 (330)
Q Consensus 58 LH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQ 99 (330)
|-+.||+-||...-.++|-.- .++.|..+|+..|-
T Consensus 1 Lsde~I~~IN~~~~tWkAG~N-------F~~~~~~~ik~LlG 35 (41)
T PF08127_consen 1 LSDEFIDYINSKNTTWKAGRN-------FENTSIEYIKRLLG 35 (41)
T ss_dssp S-HHHHHHHHHCT-SEEE-----------SSB-HHHHHHCS-
T ss_pred CCHHHHHHHHcCCCcccCCCC-------CCCCCHHHHHHHcC
Confidence 457899999999766776432 46677777766554
No 21
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=26.75 E-value=69 Score=33.43 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=31.6
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhh--------------cCC---CCccHHHHHHHHHhhh
Q 020175 50 QRLRWTHELHERFVDAVAQLGGPDRATPKGVLRV--------------MGV---QGLTIYHVKSHLQKYR 102 (330)
Q Consensus 50 ~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~l--------------M~V---~GLT~~hVKSHLQKYR 102 (330)
.-=+|.++.-+.|.||+..+- .--+-|-||.- ++. +-=|+.+|.||.|..-
T Consensus 75 aegvWSpdIEqsFqEALaiyp--pcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVla 142 (455)
T KOG3841|consen 75 AEGVWSPDIEQSFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA 142 (455)
T ss_pred cccccChhHHHHHHHHHhhcC--CCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 334799999999999998763 12223344321 111 2346677888887753
No 22
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=24.96 E-value=2.9e+02 Score=26.79 Aligned_cols=45 Identities=20% Similarity=0.391 Sum_probs=34.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhHHHHHHHHH
Q 020175 134 GMQITEALKLQMEVQKRLHEQLE---------VQRQLQLRIEAQGKYLKKIIEE 178 (330)
Q Consensus 134 ~~qitEALrlQmEVQkrLhEQLE---------VQR~LQlRIEAQGKYLqsiLEk 178 (330)
..+|..+|.---||+|+++.||| |=.+|+-.+|..-||+...+++
T Consensus 63 SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kk 116 (226)
T cd07645 63 SKELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERKTDLDVKYMTATLKR 116 (226)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777766688988888887 3457888999999999965543
No 23
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=24.50 E-value=3e+02 Score=26.73 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=33.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHHHHHHH
Q 020175 134 GMQITEALKLQMEVQKRLHEQLEV---------QRQLQLRIEAQGKYLKKIIEE 178 (330)
Q Consensus 134 ~~qitEALrlQmEVQkrLhEQLEV---------QR~LQlRIEAQGKYLqsiLEk 178 (330)
..+|..||.---+|+|.++.+||+ =..|+-++|..-|||...+++
T Consensus 65 SkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~k~i~a~~Kk 118 (232)
T cd07646 65 SKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLTAALKK 118 (232)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677776666888888777763 347999999999999975553
No 24
>PHA02602 56 dCTP pyrophosphatase; Provisional
Probab=23.01 E-value=70 Score=29.77 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020175 149 KRLHEQLEVQRQLQLRI 165 (330)
Q Consensus 149 krLhEQLEVQR~LQlRI 165 (330)
.+|...|++||+||.||
T Consensus 30 dpLq~m~dmQ~~lq~~l 46 (172)
T PHA02602 30 DPLQVMLDMQKSLQVRL 46 (172)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45666677777777777
No 25
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=20.98 E-value=5.5e+02 Score=28.99 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhHHHHHHH
Q 020175 139 EALKLQMEVQKRLHEQLE------------VQRQLQLRIEAQGKYLKKII 176 (330)
Q Consensus 139 EALrlQmEVQkrLhEQLE------------VQR~LQlRIEAQGKYLqsiL 176 (330)
-+.+|--|++||-||||- +||.=+|-+|-++=+||--|
T Consensus 404 ~ih~~eeelirrR~eelrHa~DIR~~YE~KLertN~ly~eLs~cm~qLel 453 (904)
T KOG4721|consen 404 CIHRLEEELIRRRREELRHALDIREHYERKLERTNNLYMELSACMLQLEL 453 (904)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999985 67888888999988888644
Done!