Query 020175
Match_columns 330
No_of_seqs 199 out of 432
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 12:56:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 4.7E-29 1.6E-33 190.1 6.8 60 46-106 2-61 (64)
2 2yus_A SWI/SNF-related matrix- 94.7 0.062 2.1E-06 41.5 5.9 51 47-103 14-64 (79)
3 2yum_A ZZZ3 protein, zinc fing 93.2 0.083 2.9E-06 39.3 3.9 53 49-104 6-61 (75)
4 2cu7_A KIAA1915 protein; nucle 92.4 0.24 8.1E-06 36.8 5.4 51 49-105 7-57 (72)
5 1x41_A Transcriptional adaptor 91.6 0.35 1.2E-05 34.8 5.4 49 49-103 6-55 (60)
6 2iw5_B Protein corest, REST co 90.4 0.27 9.2E-06 45.6 4.8 52 46-103 128-179 (235)
7 2xag_B REST corepressor 1; ami 89.4 0.45 1.5E-05 47.9 5.9 51 48-104 377-427 (482)
8 1ity_A TRF1; helix-turn-helix, 88.6 1.6 5.4E-05 32.0 6.9 54 46-103 5-59 (69)
9 2cqq_A RSGI RUH-037, DNAJ homo 87.5 0.93 3.2E-05 34.5 5.2 47 52-104 9-58 (72)
10 2hzd_A Transcriptional enhance 86.8 0.74 2.5E-05 36.6 4.4 58 48-107 3-77 (82)
11 2cqr_A RSGI RUH-043, DNAJ homo 86.5 3 0.0001 31.7 7.6 50 50-102 17-67 (73)
12 2elk_A SPCC24B10.08C protein; 86.1 1.6 5.5E-05 31.2 5.6 48 51-103 9-57 (58)
13 3sjm_A Telomeric repeat-bindin 82.6 2.1 7.1E-05 31.6 5.0 49 49-101 9-58 (64)
14 2d9a_A B-MYB, MYB-related prot 82.0 2.9 0.0001 29.6 5.4 48 48-101 5-53 (60)
15 2eqr_A N-COR1, N-COR, nuclear 76.8 4.8 0.00017 29.0 5.3 46 46-97 7-52 (61)
16 2dim_A Cell division cycle 5-l 75.5 5.7 0.00019 29.0 5.4 48 48-101 6-54 (70)
17 1guu_A C-MYB, MYB proto-oncoge 74.7 7.5 0.00026 26.6 5.6 46 51-101 3-48 (52)
18 1w0t_A Telomeric repeat bindin 74.6 5.6 0.00019 27.6 5.0 47 51-101 2-49 (53)
19 2cjj_A Radialis; plant develop 73.0 5.6 0.00019 31.6 5.2 47 53-102 10-57 (93)
20 2yqk_A Arginine-glutamic acid 71.9 4.3 0.00015 29.7 4.0 53 47-107 5-57 (63)
21 2ba2_A D12_ORF131, hypothetica 71.4 9.9 0.00034 30.5 6.2 44 137-183 34-77 (85)
22 1wgx_A KIAA1903 protein; MYB D 69.5 7.6 0.00026 29.9 5.0 46 53-101 10-56 (73)
23 1gvd_A MYB proto-oncogene prot 68.5 11 0.00039 25.7 5.4 46 51-101 3-48 (52)
24 4eef_G F-HB80.4, designed hema 66.8 1.9 6.7E-05 33.7 1.2 44 53-99 22-66 (74)
25 2aje_A Telomere repeat-binding 57.0 16 0.00054 29.7 5.0 52 46-101 8-62 (105)
26 2kes_A Synphilin-1; synphillin 56.1 14 0.00047 26.8 3.9 23 146-168 15-41 (48)
27 2din_A Cell division cycle 5-l 53.8 20 0.00067 25.7 4.6 48 49-103 7-54 (66)
28 2k9n_A MYB24; R2R3 domain, DNA 45.1 28 0.00097 27.0 4.6 46 51-102 53-98 (107)
29 1gv2_A C-MYB, MYB proto-oncoge 44.4 34 0.0012 26.2 5.0 45 51-101 56-100 (105)
30 2crg_A Metastasis associated p 44.0 24 0.00081 26.3 3.8 47 47-98 4-50 (70)
31 2roh_A RTBP1, telomere binding 42.5 1.4E+02 0.0047 24.8 8.6 52 46-101 26-80 (122)
32 3osg_A MYB21; transcription-DN 41.3 45 0.0015 26.7 5.4 52 52-109 63-114 (126)
33 2ltp_A Nuclear receptor corepr 45.5 6.3 0.00021 30.5 0.0 49 49-103 14-62 (89)
34 1gv2_A C-MYB, MYB proto-oncoge 38.4 61 0.0021 24.7 5.5 46 51-101 4-49 (105)
35 3osg_A MYB21; transcription-DN 38.2 45 0.0016 26.6 5.0 50 47-102 7-56 (126)
36 1h8a_C AMV V-MYB, MYB transfor 37.8 34 0.0011 27.3 4.1 45 51-101 79-123 (128)
37 3zqc_A MYB3; transcription-DNA 36.8 47 0.0016 26.7 4.8 46 52-103 55-100 (131)
38 2da3_A Alpha-fetoprotein enhan 36.4 83 0.0028 22.7 5.7 61 44-107 14-74 (80)
39 2ckx_A NGTRF1, telomere bindin 32.8 56 0.0019 25.3 4.5 45 53-101 2-49 (83)
40 2k9n_A MYB24; R2R3 domain, DNA 31.6 93 0.0032 24.0 5.6 45 52-101 2-46 (107)
41 3zqc_A MYB3; transcription-DNA 31.5 69 0.0023 25.7 5.0 44 53-102 4-48 (131)
42 3ok8_A Brain-specific angiogen 29.8 1.2E+02 0.0039 27.8 6.7 42 135-176 71-121 (222)
43 2juh_A Telomere binding protei 29.5 61 0.0021 27.0 4.4 53 46-102 12-67 (121)
44 1h89_C C-MYB, MYB proto-oncoge 26.5 78 0.0027 26.0 4.6 46 50-101 109-154 (159)
45 2xdj_A Uncharacterized protein 26.4 2E+02 0.0069 22.3 6.7 44 142-185 20-63 (83)
46 1h8a_C AMV V-MYB, MYB transfor 26.2 1.5E+02 0.0051 23.4 6.1 47 50-101 26-72 (128)
47 3kdq_A Uncharacterized conserv 24.6 73 0.0025 27.3 4.2 19 133-151 2-20 (154)
48 1h89_C C-MYB, MYB proto-oncoge 23.3 1.7E+02 0.0058 23.9 6.1 48 49-101 56-103 (159)
49 4a69_C Nuclear receptor corepr 22.3 52 0.0018 25.8 2.6 41 49-95 41-81 (94)
50 3ghg_A Fibrinogen alpha chain; 21.8 1.3E+02 0.0043 31.2 5.8 40 135-174 109-149 (562)
51 2llk_A Cyclin-D-binding MYB-li 21.6 1.1E+02 0.0039 23.0 4.3 44 49-99 21-64 (73)
52 2lm1_A Lysine-specific demethy 21.2 31 0.0011 26.9 1.1 46 56-102 44-95 (107)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=4.7e-29 Score=190.12 Aligned_cols=60 Identities=50% Similarity=0.774 Sum_probs=57.0
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhhhhhcc
Q 020175 46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKY 106 (330)
Q Consensus 46 ~~~K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~ 106 (330)
..+|+|++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+...
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999 79999999999999999999999999999999754
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=94.68 E-value=0.062 Score=41.48 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=41.6
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhhhh
Q 020175 47 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (330)
Q Consensus 47 ~~K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (330)
....+-.||+|=+.+|++||..+|+-+ +.|-+.|+ +=|..+++.|-++|-+
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W----~~IA~~v~--~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYKDDW----NKVSEHVG--SRTQDECILHFLRLPI 64 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSSSCH----HHHHHHHS--SCCHHHHHHHHTTSCC
T ss_pred ccccCCCcCHHHHHHHHHHHHHhCCCH----HHHHHHcC--CCCHHHHHHHHHHhcc
Confidence 344567899999999999999999654 46777765 7999999999988743
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.18 E-value=0.083 Score=39.31 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=40.0
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCCc---hhhhhhcCCCCccHHHHHHHHHhhhhh
Q 020175 49 KQRLRWTHELHERFVDAVAQLGGPDRATP---KGVLRVMGVQGLTIYHVKSHLQKYRLA 104 (330)
Q Consensus 49 K~RlrWT~ELH~rFV~AV~qLGG~dkAtP---K~IL~lM~V~GLT~~hVKSHLQKYRl~ 104 (330)
..+-.||+|=+++|+++|..+|. +...| +.|-+.| +|=|..+|+.|.|+|-..
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~-~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPP-EEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCC-CSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 44557999999999999999992 22112 2455554 689999999999999654
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=92.38 E-value=0.24 Score=36.82 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=40.7
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhhhhhc
Q 020175 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 105 (330)
Q Consensus 49 K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k 105 (330)
..+-.||+|-++.|+++|..+|- .=+.|-+.| +|=|..+|+.|.++|-..+
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence 44568999999999999999994 224566654 7899999999999985543
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=91.58 E-value=0.35 Score=34.77 Aligned_cols=49 Identities=24% Similarity=0.263 Sum_probs=40.0
Q ss_pred CCCcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHhhhh
Q 020175 49 KQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (330)
Q Consensus 49 K~RlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (330)
-.|-.||+|-.++|++||..+| +-+ +.|-+.| +|=|..+++.|-++|-+
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W----~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNW----QDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCH----HHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcH----HHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 4456799999999999999999 434 3666666 68899999999988754
No 6
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=90.41 E-value=0.27 Score=45.64 Aligned_cols=52 Identities=25% Similarity=0.374 Sum_probs=43.0
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhhhh
Q 020175 46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (330)
Q Consensus 46 ~~~K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (330)
...|..-+||+|=++.|++|+..+|--+ ..|-++ |++=|..+|+.|..+||-
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYGKDW----~~IAk~--VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYGRDF----QAISDV--IGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHSSCH----HHHHHH--HSSCCHHHHHHHHHHTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHCcCH----HHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 3457788999999999999999999433 367666 568999999999999873
No 7
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=89.41 E-value=0.45 Score=47.86 Aligned_cols=51 Identities=27% Similarity=0.400 Sum_probs=42.6
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhhhhh
Q 020175 48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA 104 (330)
Q Consensus 48 ~K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~ 104 (330)
.+..-+||++=|..|++||.+.|--+ +.|-++++- -|..+|++|.++||..
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGkdw----~~IA~~VgT--KT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGRDF----QAISDVIGN--KSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTTCH----HHHHHHHSS--CCHHHHHHHHHHTTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCcCH----HHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence 46778999999999999999999433 477778665 5999999999999764
No 8
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=88.61 E-value=1.6 Score=31.95 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=44.2
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHhhhh
Q 020175 46 LASKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (330)
Q Consensus 46 ~~~K~RlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (330)
..++.|-.||+|--+..+++|.++| |-+ +.|.+.|+..|=|-.+++.+-..|--
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W----~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNW----SKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCH----HHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcH----HHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 3567888999999999999999999 444 47888887668899999988777744
No 9
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=87.47 E-value=0.93 Score=34.46 Aligned_cols=47 Identities=15% Similarity=0.332 Sum_probs=37.5
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCCchh---hhhhcCCCCccHHHHHHHHHhhhhh
Q 020175 52 LRWTHELHERFVDAVAQLGGPDRATPKG---VLRVMGVQGLTIYHVKSHLQKYRLA 104 (330)
Q Consensus 52 lrWT~ELH~rFV~AV~qLGG~dkAtPK~---IL~lM~V~GLT~~hVKSHLQKYRl~ 104 (330)
-.||.|=+.+|+.|+..++ .-||.+ |-+.| |=|..+|+.|-+++.-.
T Consensus 9 ~~WT~eE~k~fe~al~~~p---~~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFP---GGTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSC---TTCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 3699999999999999998 346665 44555 68999999998887544
No 10
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=86.81 E-value=0.74 Score=36.62 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=37.5
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhh---c-C-----------C--CCccHHHHHHHHHhhhhhccC
Q 020175 48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRV---M-G-----------V--QGLTIYHVKSHLQKYRLAKYL 107 (330)
Q Consensus 48 ~K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~l---M-~-----------V--~GLT~~hVKSHLQKYRl~k~~ 107 (330)
++..-.|.++|-..|++|+..+-=.... |-+|.. | | . .-=|+.+|.||||.-|-.+..
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 3455689999999999999887511122 233311 1 1 0 234777999999998765543
No 11
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=86.48 E-value=3 Score=31.75 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=39.3
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcC-CCCccHHHHHHHHHhhh
Q 020175 50 QRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMG-VQGLTIYHVKSHLQKYR 102 (330)
Q Consensus 50 ~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~-V~GLT~~hVKSHLQKYR 102 (330)
.+-.||.+=...|++||..+| +-+|..--++-. |+|=|..+|+.|.+.+.
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g---~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYP---RGSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSC---SSSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344699999999999999998 237766554433 57999999999988764
No 12
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=86.14 E-value=1.6 Score=31.22 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=37.9
Q ss_pred CcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHhhhh
Q 020175 51 RLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (330)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (330)
+-.||++-.+++++||.++| +-+. .|-+.|+. |=|..+++.|-++|-+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~----~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWA----DIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHH----HHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHH----HHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 44699999999999999999 5444 56666642 6899999999888754
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=82.57 E-value=2.1 Score=31.55 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=38.4
Q ss_pred CCCcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHhh
Q 020175 49 KQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (330)
Q Consensus 49 K~RlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (330)
+.|-.||+|--++.+++|.++| |-+ +.|.+.+++.|=|-.+++-+-..+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W----~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNW----AAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCH----HHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCch----HHHHhhcCCCCCCHHHHHHHHHHH
Confidence 4566899999999999999999 333 378888888888999988655433
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=82.04 E-value=2.9 Score=29.58 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=38.1
Q ss_pred CCCCcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHhh
Q 020175 48 SKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (330)
Q Consensus 48 ~K~RlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (330)
...|-.||+|=.++++++|.++| +-+ ..|-+.| +|=|-.+++.|-.+|
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W----~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDW----KFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCH----HHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCH----HHHHHHc--cCCCHHHHHHHHHHH
Confidence 45677899999999999999999 333 3566665 688999999887765
No 15
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.79 E-value=4.8 Score=29.01 Aligned_cols=46 Identities=13% Similarity=-0.021 Sum_probs=35.0
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHH
Q 020175 46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSH 97 (330)
Q Consensus 46 ~~~K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSH 97 (330)
..++..-.||++=|+.|++|+.+.|--+ ..|-.+ +++-|..+|.-|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk~w----~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPKNF----GLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTTCH----HHHHHH--CTTSCHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCCCH----HHHHHH--cCCCCHHHHHHH
Confidence 4567778999999999999999998322 355544 468888888754
No 16
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.49 E-value=5.7 Score=28.96 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=39.0
Q ss_pred CCCCcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHhh
Q 020175 48 SKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (330)
Q Consensus 48 ~K~RlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (330)
...|=.||+|-.++++++|.++| +-. +.|-+.|+ |=|..+++-|-..|
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W----~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQW----SRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCH----HHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCH----HHHHHHhc--CCCHHHHHHHHHHH
Confidence 45567899999999999999999 333 46777775 88999999888776
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=74.75 E-value=7.5 Score=26.57 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=36.1
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhh
Q 020175 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (330)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (330)
|-.||+|-.++++++|.++|. ..=+.|-+.| +|=|-.+++.|-++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999993 1234666665 588999999887776
No 18
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=74.59 E-value=5.6 Score=27.57 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=37.2
Q ss_pred CcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHhh
Q 020175 51 RLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (330)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (330)
|-.||+|-.+..+++|..+| |-. +.|.+.|+..|=|-.+++.+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W----~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNW----SKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCH----HHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCH----HHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45799999999999999999 434 477888875578888888766554
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=73.01 E-value=5.6 Score=31.62 Aligned_cols=47 Identities=28% Similarity=0.369 Sum_probs=36.5
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcC-CCCccHHHHHHHHHhhh
Q 020175 53 RWTHELHERFVDAVAQLGGPDRATPKGVLRVMG-VQGLTIYHVKSHLQKYR 102 (330)
Q Consensus 53 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~-V~GLT~~hVKSHLQKYR 102 (330)
.||.|=...|++|+..+| +-+|.+--++=. |+|=|..+|+.|-+++.
T Consensus 10 ~WT~eEd~~L~~al~~~~---~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYD---KDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp SCCHHHHHHHHHHHHHSC---TTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 599999999999999998 235654333322 47999999999998874
No 20
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.94 E-value=4.3 Score=29.65 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=34.9
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhhhhhccC
Q 020175 47 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL 107 (330)
Q Consensus 47 ~~K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~ 107 (330)
+...+-.||++=|+.|.+|+...| +. =..|-+.| |+.-|..+|.. -|=+-|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yG---Kd-f~~I~~~~-v~~Kt~~~~v~---fYY~wKkt 57 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYG---KN-FFRIRKEL-LPNKETGELIT---FYYYWKKT 57 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTC---SC-HHHHHHHS-CTTSCHHHHHH---HHHHHHCS
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhC---cc-HHHHHHHH-cCCCcHHHHHH---HHhcccCC
Confidence 445567899999999999999999 21 12333311 56778887754 34444443
No 21
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=71.36 E-value=9.9 Score=30.53 Aligned_cols=44 Identities=32% Similarity=0.440 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Q 020175 137 ITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLS 183 (330)
Q Consensus 137 itEALrlQmEVQkrLhEQLEVQR~LQlRIEAQGKYLqsiLEkqq~l~ 183 (330)
|.+.|..|-|-=+.--||+ +.||+-+.|||+-|+.|++.-+.+.
T Consensus 34 ie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL~~~n 77 (85)
T 2ba2_A 34 VMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEALQGIN 77 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777776555556666 8899999999999999998666544
No 22
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=69.47 E-value=7.6 Score=29.92 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=37.5
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcC-CCCccHHHHHHHHHhh
Q 020175 53 RWTHELHERFVDAVAQLGGPDRATPKGVLRVMG-VQGLTIYHVKSHLQKY 101 (330)
Q Consensus 53 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~-V~GLT~~hVKSHLQKY 101 (330)
.||.+=..+|.+|+..++ +.+|-+-.++-. |+|=|.++|+.|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 499999999999999987 558876655543 7899999999876654
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=68.50 E-value=11 Score=25.70 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=35.0
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhh
Q 020175 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (330)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (330)
|-.||+|=.++++++|.++|.. .=..|-+.| +|=|-.+++.|-..|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC---hHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 4479999999999999999931 113555554 688999999887766
No 24
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=66.81 E-value=1.9 Score=33.73 Aligned_cols=44 Identities=27% Similarity=0.340 Sum_probs=36.5
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcC-CCCccHHHHHHHHH
Q 020175 53 RWTHELHERFVDAVAQLGGPDRATPKGVLRVMG-VQGLTIYHVKSHLQ 99 (330)
Q Consensus 53 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~-V~GLT~~hVKSHLQ 99 (330)
.||.+=.+.|..|+..+. +-||.+-.++-. |+|-|..+|+.|-|
T Consensus 22 ~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 22 PWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 499999999999998875 667877665544 68999999998855
No 25
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=57.00 E-value=16 Score=29.74 Aligned_cols=52 Identities=21% Similarity=0.140 Sum_probs=41.1
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCC-CCCCCchhhhhhcC--CCCccHHHHHHHHHhh
Q 020175 46 LASKQRLRWTHELHERFVDAVAQLGG-PDRATPKGVLRVMG--VQGLTIYHVKSHLQKY 101 (330)
Q Consensus 46 ~~~K~RlrWT~ELH~rFV~AV~qLGG-~dkAtPK~IL~lM~--V~GLT~~hVKSHLQKY 101 (330)
..++.|-.||+|--+..+++|.++|. -+. .|++.+. .+|=|-.++|.+...+
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~----~I~~~~~~~f~~RT~v~lKdrWrnl 62 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWR----DVKLCAFEDADHRTYVDLKDKWKTL 62 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHH----HHHSSSSSSTTCCCHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChH----HHHHHhccccCCCCHHHHHHHHHHH
Confidence 45788999999999999999999993 444 6777653 4889999999765544
No 26
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=56.08 E-value=14 Score=26.75 Aligned_cols=23 Identities=48% Similarity=0.598 Sum_probs=16.7
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHH
Q 020175 146 EVQKRLHEQ----LEVQRQLQLRIEAQ 168 (330)
Q Consensus 146 EVQkrLhEQ----LEVQR~LQlRIEAQ 168 (330)
.+-|+|+|| +.+|.+||.-+|+|
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~ 41 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQ 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567888888 44677777777766
No 27
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.76 E-value=20 Score=25.74 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=37.5
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhhhh
Q 020175 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (330)
Q Consensus 49 K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (330)
..+-.||+|=.++++++|..+|.- =..|-++| |=|-.+|+.|-+.|--
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~~----W~~Ia~~~---gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPTQ----WRTIAPII---GRTAAQCLEHYEFLLD 54 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTTC----HHHHHHHH---SSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCC----HHHHhccc---CcCHHHHHHHHHHHhC
Confidence 345579999999999999999942 24566644 5899999999988843
No 28
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=45.15 E-value=28 Score=27.03 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=36.6
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhhh
Q 020175 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102 (330)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 102 (330)
+-.||+|=...++++|.++|.-. ..|-+.| +|=|-.+|+.|-..+.
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W----~~Ia~~l--~gRt~~~~k~rw~~l~ 98 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKW----NKISKFL--KNRSDNNIRNRWMMIA 98 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCH----HHHHHHH--SSSCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcCH----HHHHHHC--CCCCHHHHHHHHHHHH
Confidence 45799999999999999999422 3566665 7899999999877653
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=44.39 E-value=34 Score=26.17 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=35.3
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhh
Q 020175 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (330)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (330)
+-.||+|=...++++|.++|.-. ..|-+. ++|=|-.+|+.|-..+
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~~W----~~Ia~~--l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGNRW----AEIAKL--LPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSCH----HHHHTT--CTTCCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCH----HHHHHH--cCCCCHHHHHHHHHHH
Confidence 45799999999999999999432 255554 4799999999886543
No 30
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=43.97 E-value=24 Score=26.27 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=33.3
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHH
Q 020175 47 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHL 98 (330)
Q Consensus 47 ~~K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHL 98 (330)
.++..-.||++=+..|.+|+...| +. =..|-+.| |++-|..+|..+-
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yG---Kd-f~~I~~~~-v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYG---KD-FNDIRQDF-LPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTC---SC-HHHHHHTT-CSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhC---cc-HHHHHHHH-cCCCCHHHHHHHH
Confidence 346677899999999999999999 21 12333311 5778888877654
No 31
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=42.49 E-value=1.4e+02 Score=24.84 Aligned_cols=52 Identities=25% Similarity=0.172 Sum_probs=40.9
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCC-CCCCCchhhhhhc--CCCCccHHHHHHHHHhh
Q 020175 46 LASKQRLRWTHELHERFVDAVAQLGG-PDRATPKGVLRVM--GVQGLTIYHVKSHLQKY 101 (330)
Q Consensus 46 ~~~K~RlrWT~ELH~rFV~AV~qLGG-~dkAtPK~IL~lM--~V~GLT~~hVKSHLQKY 101 (330)
..++.|-.||+|--+..+++|.++|. -+. .|++.+ ..+|=|-.++|.+...+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~----~I~~~~~~~~~~RT~vdlKdRWrnl 80 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWR----DVKFRAFENVHHRTYVDLKDKWKTL 80 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHH----HHHHHHHSSSCCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChH----HHHHHhccccCCCCHHHHHHHHHHH
Confidence 45788899999999999999999993 444 677765 24889999999665444
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=41.34 E-value=45 Score=26.66 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=38.9
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhhhhhccCCC
Q 020175 52 LRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPD 109 (330)
Q Consensus 52 lrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~p~ 109 (330)
-.||+|=.+.++++|.++|.-+ ..|-+. ++|=|-.+|+.|...+.....+|.
T Consensus 63 ~~WT~eEd~~L~~~v~~~G~~W----~~Ia~~--l~gRt~~~~k~rw~~l~~k~~~p~ 114 (126)
T 3osg_A 63 TPWTAEEDALLVQKIQEYGRQW----AIIAKF--FPGRTDIHIKNRWVTISNKLGIPQ 114 (126)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCH----HHHHTT--STTCCHHHHHHHHHHHHHHTTC--
T ss_pred ccCCHHHHHHHHHHHHHHCcCH----HHHHHH--cCCCCHHHHHHHHHHHHHhcCCCC
Confidence 3699999999999999999533 356554 479999999999877655444443
No 33
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=45.53 E-value=6.3 Score=30.49 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=37.2
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhhhh
Q 020175 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (330)
Q Consensus 49 K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (330)
-.+=.||+|=.+.|+++|..+|--+. .|-+. ++|=|..+|+.|...|.-
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~----~IA~~--l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWS----AIARM--VGSKTVSQCKNFYFNYKK 62 (89)
Confidence 34457999999999999999994333 45444 468899999998877643
No 34
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=38.42 E-value=61 Score=24.74 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=35.5
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhh
Q 020175 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (330)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (330)
+-.||+|=-++++++|..+|.- .=+.|-+.| +|=|..+++.|-.+|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 4479999999999999999941 123566665 688999999877665
No 35
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=38.23 E-value=45 Score=26.65 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=38.7
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhhh
Q 020175 47 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102 (330)
Q Consensus 47 ~~K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 102 (330)
....|-.||+|--++++++|.++|. .=+.|-+.| +|=|..+++.+-..|-
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNYL 56 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhhc
Confidence 4566778999999999999999994 234666665 5778888887776654
No 36
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=37.82 E-value=34 Score=27.30 Aligned_cols=45 Identities=24% Similarity=0.336 Sum_probs=35.2
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhh
Q 020175 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (330)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (330)
+-.||+|-...++++|.++|.-+ ..|-+.| +|=|-.+|+.|...+
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~~W----~~Ia~~l--~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGNRW----AEIAKLL--PGRTDNAVKNHWNST 123 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCH----HHHGGGS--TTCCHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHCcCH----HHHHHHC--CCCCHHHHHHHHHHH
Confidence 45799999999999999999422 3566654 799999999886543
No 37
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=36.79 E-value=47 Score=26.68 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=36.4
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhhhh
Q 020175 52 LRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (330)
Q Consensus 52 lrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (330)
=.||+|=...++++|.++|.-+ ..|-+.| +|=|-.+|+.|...|-.
T Consensus 55 ~~Wt~eEd~~L~~~~~~~G~~W----~~Ia~~l--~gRt~~~~k~rw~~~l~ 100 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKLGSKW----SVIAKLI--PGRTDNAIKNRWNSSIS 100 (131)
T ss_dssp SCCCHHHHHHHHHHHHHSCSCH----HHHTTTS--TTCCHHHHHHHHHHTTG
T ss_pred CCCCHHHHHHHHHHHHHHCcCH----HHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 3699999999999999999543 3555554 68999999998876643
No 38
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=36.45 E-value=83 Score=22.74 Aligned_cols=61 Identities=20% Similarity=0.097 Sum_probs=41.3
Q ss_pred CCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhhhhhccC
Q 020175 44 PSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL 107 (330)
Q Consensus 44 ~~~~~K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~ 107 (330)
+...++.|.++|++- ...++.+.... ...++..+.++...-|||..+|+-=.|..|...+.
T Consensus 14 ~~~~rr~Rt~ft~~Q-l~~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 74 (80)
T 2da3_A 14 PQRDKRLRTTITPEQ-LEILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERK 74 (80)
T ss_dssp CCCCTTCCSSCCTTT-HHHHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHH-HHHHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhh
Confidence 445677788888863 23344444443 35566666677777789999999999988876443
No 39
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=32.79 E-value=56 Score=25.25 Aligned_cols=45 Identities=22% Similarity=0.157 Sum_probs=35.5
Q ss_pred ccCHHHHHHHHHHHHHhCC-CCCCCchhhhhhcC--CCCccHHHHHHHHHhh
Q 020175 53 RWTHELHERFVDAVAQLGG-PDRATPKGVLRVMG--VQGLTIYHVKSHLQKY 101 (330)
Q Consensus 53 rWT~ELH~rFV~AV~qLGG-~dkAtPK~IL~lM~--V~GLT~~hVKSHLQKY 101 (330)
.||+|-.+..+++|.++|. -++ .|++... ++|=|-.++|.+-..+
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~----~I~~~~~~~~~~RT~~~lKdrWrnl 49 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWR----DVKMRAFDNADHRTYVDLKDKWKTL 49 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHH----HHHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcH----HHHHhhccccCCCCHHHHHHHHHHH
Confidence 4999999999999999993 343 6776533 5789999999876655
No 40
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=31.61 E-value=93 Score=24.03 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=33.8
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhh
Q 020175 52 LRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (330)
Q Consensus 52 lrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (330)
-.||+|--++++++|..+|.. .=..|-+.|+ |=|..+++.+-..|
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~--~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAK---DWIRISQLMI--TRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSS---CHHHHHHHTT--TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CHHHHhhhcC--CCCHHHHHHHHHHH
Confidence 479999999999999999931 2235666664 77888888766554
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=31.47 E-value=69 Score=25.69 Aligned_cols=44 Identities=7% Similarity=-0.000 Sum_probs=34.0
Q ss_pred ccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHhhh
Q 020175 53 RWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102 (330)
Q Consensus 53 rWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 102 (330)
.||+|--++.+++|...| +-+. .|-+.| +|=|..++.-+-..|-
T Consensus 4 ~Wt~eED~~L~~~v~~~g~~~W~----~Ia~~~--~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 4 PFTEAEDDLIREYVKENGPQNWP----RITSFL--PNRSPKQCRERWFNHL 48 (131)
T ss_dssp SCCHHHHHHHHHHHHHHCSCCGG----GGTTSC--TTSCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCcCCHH----HHHHHH--CCCCHHHHHHHHhhcc
Confidence 699999999999999999 3333 555555 6788888887776653
No 42
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=29.78 E-value=1.2e+02 Score=27.76 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=34.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHHHHH
Q 020175 135 MQITEALKLQMEVQKRLHEQLEV---------QRQLQLRIEAQGKYLKKII 176 (330)
Q Consensus 135 ~qitEALrlQmEVQkrLhEQLEV---------QR~LQlRIEAQGKYLqsiL 176 (330)
-+|.+||.---|++|+|..+||. =..|+.+||...||++..+
T Consensus 71 keLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~ 121 (222)
T 3ok8_A 71 QILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSC 121 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778887777999999888873 4679999999999998644
No 43
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=29.51 E-value=61 Score=26.95 Aligned_cols=53 Identities=21% Similarity=0.126 Sum_probs=42.5
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCC-CCCCCchhhhhhcC--CCCccHHHHHHHHHhhh
Q 020175 46 LASKQRLRWTHELHERFVDAVAQLGG-PDRATPKGVLRVMG--VQGLTIYHVKSHLQKYR 102 (330)
Q Consensus 46 ~~~K~RlrWT~ELH~rFV~AV~qLGG-~dkAtPK~IL~lM~--V~GLT~~hVKSHLQKYR 102 (330)
...+.|-.||+|--+..+++|.++|. -+. .|++.+. .+|=|-.++|.+...+-
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~----~Ia~~~~~~f~~RT~v~lKdRWrnll 67 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWR----DVKMRAFDNADHRTYVDLKDKWKTLV 67 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHH----HHHHHHCSCCSSCCSHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHH----HHHHHhccccCCCCHHHHHHHHHHHH
Confidence 35788899999999999999999993 444 7887765 37889999997766554
No 44
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=26.46 E-value=78 Score=26.00 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=35.9
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhh
Q 020175 50 QRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (330)
Q Consensus 50 ~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (330)
.+-.||+|-...++++|.++|.-. ..|-+. +||=|-.+||.|...+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W----~~Ia~~--l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRW----AEIAKL--LPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCH----HHHHTT--STTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHCCCH----HHHHHH--CCCCCHHHHHHHHHHH
Confidence 456799999999999999999422 356555 4799999999886543
No 45
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=26.35 E-value=2e+02 Score=22.32 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccc
Q 020175 142 KLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGV 185 (330)
Q Consensus 142 rlQmEVQkrLhEQLEVQR~LQlRIEAQGKYLqsiLEkqq~l~g~ 185 (330)
++++++|.+|.+-=.=-+.|.-.||.+..-|..|.+.|..++--
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777774322122567778999999999999988765543
No 46
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=26.17 E-value=1.5e+02 Score=23.44 Aligned_cols=47 Identities=15% Similarity=0.286 Sum_probs=35.5
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhh
Q 020175 50 QRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (330)
Q Consensus 50 ~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (330)
.+-.||+|=-++++++|..+|.- .=+.|-+.| +|=|..+++.|-..|
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHL--KGRIGKQCRERWHNH 72 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHS--SSCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHh--cCCcHHHHHHHHHHh
Confidence 45579999999999999999931 123566665 588889998777654
No 47
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=24.60 E-value=73 Score=27.31 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=17.1
Q ss_pred CCcchHHHHHHHHHHHHHH
Q 020175 133 SGMQITEALKLQMEVQKRL 151 (330)
Q Consensus 133 s~~qitEALrlQmEVQkrL 151 (330)
++|-+.|||.+--.+|||+
T Consensus 2 ~~MKLAEAL~lRadl~kri 20 (154)
T 3kdq_A 2 NAMYLAEALAQRVEAQRRY 20 (154)
T ss_dssp -CCBHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHH
Confidence 4688999999999999999
No 48
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=23.28 E-value=1.7e+02 Score=23.94 Aligned_cols=48 Identities=15% Similarity=0.206 Sum_probs=36.7
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHhh
Q 020175 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (330)
Q Consensus 49 K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (330)
..+-.||+|-..+++++|..+|.- .=..|-+.| +|=|-.+++.+-..|
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHNH 103 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSC---CHHHHHHTS--TTCCHHHHHHHHHHT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcc---cHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 345689999999999999999931 123566665 688999999877665
No 49
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=22.34 E-value=52 Score=25.78 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=28.4
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHH
Q 020175 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVK 95 (330)
Q Consensus 49 K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVK 95 (330)
+..-.||++=|+.|.+|+.+.| |- -..|-+.| ++-|..++-
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~g---K~-F~~Ia~~l--~~Kt~~~cV 81 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHP---KN-FGLIASFL--ERKTVAECV 81 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHST---TC-HHHHHHTC--TTCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcC---CC-HHHHHHHc--CCCCHHHHH
Confidence 4456799999999999999998 21 24554443 555655543
No 50
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.83 E-value=1.3e+02 Score=31.18 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=25.6
Q ss_pred cchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 020175 135 MQITEALKLQM-EVQKRLHEQLEVQRQLQLRIEAQGKYLKK 174 (330)
Q Consensus 135 ~qitEALrlQm-EVQkrLhEQLEVQR~LQlRIEAQGKYLqs 174 (330)
.||++-|+-++ .++.+|..||.--|.||-.|+.|-.-||+
T Consensus 109 nE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35665554443 56666777776667777777777766665
No 51
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=21.58 E-value=1.1e+02 Score=22.99 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=35.5
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHH
Q 020175 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQ 99 (330)
Q Consensus 49 K~RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQ 99 (330)
-.|=.||+|--+.++++|.++|-- =..|-+.| |=|-.+||.+..
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~k----W~~IA~~l---gRt~~q~knRw~ 64 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGND----WATIGAAL---GRSASSVKDRCR 64 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSSC----HHHHHHHH---TSCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC----HHHHHHHh---CCCHHHHHHHHH
Confidence 445689999999999999999942 35788888 888889988754
No 52
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=21.22 E-value=31 Score=26.91 Aligned_cols=46 Identities=20% Similarity=0.147 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCc----hhhhhhcCCCCcc--HHHHHHHHHhhh
Q 020175 56 HELHERFVDAVAQLGGPDRATP----KGVLRVMGVQGLT--IYHVKSHLQKYR 102 (330)
Q Consensus 56 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GLT--~~hVKSHLQKYR 102 (330)
-+|++-|.. |..+||.++.+- +.|.+.||++.-| ...++.|=.||=
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L 95 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERIL 95 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 368888876 778999876543 3678889987633 245777666663
Done!