Query 020176
Match_columns 330
No_of_seqs 392 out of 3167
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0460 Mitochondrial translat 100.0 4.4E-54 9.4E-59 369.0 20.8 272 56-329 45-316 (449)
2 PLN03127 Elongation factor Tu; 100.0 6.2E-50 1.3E-54 373.9 36.3 325 1-330 1-326 (447)
3 COG0050 TufB GTPases - transla 100.0 2.1E-51 4.5E-56 346.4 23.3 269 57-329 4-272 (394)
4 PRK12736 elongation factor Tu; 100.0 1E-47 2.3E-52 356.1 34.1 269 58-330 5-273 (394)
5 COG5256 TEF1 Translation elong 100.0 4.2E-48 9E-53 342.7 29.3 264 61-329 3-291 (428)
6 PRK12735 elongation factor Tu; 100.0 3.1E-47 6.8E-52 353.1 34.0 271 58-330 5-275 (396)
7 TIGR00485 EF-Tu translation el 100.0 8.1E-47 1.7E-51 350.7 34.6 269 58-330 5-273 (394)
8 PRK00049 elongation factor Tu; 100.0 8.4E-47 1.8E-51 350.0 34.6 271 58-330 5-275 (396)
9 PLN03126 Elongation factor Tu; 100.0 3E-46 6.6E-51 350.6 36.2 271 58-330 74-352 (478)
10 CHL00071 tufA elongation facto 100.0 2E-45 4.4E-50 342.4 33.1 271 58-330 5-283 (409)
11 PLN00043 elongation factor 1-a 100.0 4.4E-45 9.6E-50 341.6 32.4 265 61-330 3-294 (447)
12 PTZ00141 elongation factor 1- 100.0 6.8E-45 1.5E-49 340.6 31.8 265 61-330 3-294 (446)
13 PRK12317 elongation factor 1-a 100.0 1.5E-43 3.2E-48 332.5 30.7 264 62-330 3-286 (425)
14 TIGR00483 EF-1_alpha translati 100.0 1.3E-42 2.7E-47 326.2 31.1 265 61-330 3-288 (426)
15 PTZ00327 eukaryotic translatio 100.0 2.1E-41 4.5E-46 315.8 29.0 244 61-330 30-324 (460)
16 TIGR02034 CysN sulfate adenyly 100.0 1.7E-40 3.6E-45 308.9 29.5 258 66-330 1-278 (406)
17 COG5258 GTPBP1 GTPase [General 100.0 7.4E-42 1.6E-46 298.0 18.9 306 6-329 57-412 (527)
18 PRK10512 selenocysteinyl-tRNA- 100.0 1.9E-40 4E-45 320.7 29.3 233 67-330 2-235 (614)
19 PRK05124 cysN sulfate adenylyl 100.0 1.1E-39 2.4E-44 307.7 30.4 266 59-330 21-306 (474)
20 TIGR01394 TypA_BipA GTP-bindin 100.0 1.4E-39 3E-44 313.2 31.6 261 66-330 2-268 (594)
21 TIGR03680 eif2g_arch translati 100.0 1.4E-39 3E-44 303.0 30.1 242 63-330 2-286 (406)
22 TIGR00475 selB selenocysteine- 100.0 1E-39 2.3E-44 314.7 30.0 236 66-330 1-237 (581)
23 COG3276 SelB Selenocysteine-sp 100.0 7.6E-40 1.6E-44 292.3 23.6 231 67-330 2-232 (447)
24 PRK04000 translation initiatio 100.0 1.6E-38 3.5E-43 295.6 29.1 245 60-330 4-291 (411)
25 PRK05506 bifunctional sulfate 100.0 3.2E-38 7E-43 309.1 31.9 263 61-330 20-302 (632)
26 KOG0458 Elongation factor 1 al 100.0 1.1E-38 2.5E-43 292.1 25.8 263 62-329 174-465 (603)
27 COG2895 CysN GTPases - Sulfate 100.0 9.1E-39 2E-43 276.4 22.2 260 62-330 3-284 (431)
28 PRK10218 GTP-binding protein; 100.0 1.8E-37 3.8E-42 298.1 29.9 263 64-330 4-272 (607)
29 COG1217 TypA Predicted membran 100.0 1E-36 2.2E-41 271.9 24.4 264 63-330 3-272 (603)
30 KOG1143 Predicted translation 100.0 9.1E-38 2E-42 271.6 15.6 307 6-330 101-467 (591)
31 COG5257 GCD11 Translation init 100.0 1.7E-36 3.6E-41 259.2 22.5 241 63-329 8-291 (415)
32 KOG0462 Elongation factor-type 100.0 8.6E-37 1.9E-41 277.2 20.6 246 63-329 58-307 (650)
33 TIGR01393 lepA GTP-binding pro 100.0 2.2E-35 4.8E-40 284.8 30.6 244 64-330 2-253 (595)
34 KOG0461 Selenocysteine-specifi 100.0 3.3E-36 7.2E-41 259.4 20.8 244 65-329 7-262 (522)
35 PRK05433 GTP-binding protein L 100.0 3.8E-35 8.2E-40 283.4 29.0 245 63-330 5-257 (600)
36 KOG0463 GTP-binding protein GP 100.0 3.6E-37 7.8E-42 268.2 12.6 306 7-330 73-432 (641)
37 cd01884 EF_Tu EF-Tu subfamily. 100.0 1E-33 2.2E-38 237.6 23.0 194 64-258 1-195 (195)
38 COG0481 LepA Membrane GTPase L 100.0 4.5E-33 9.8E-38 249.3 20.7 236 62-320 6-246 (603)
39 TIGR00487 IF-2 translation ini 100.0 3.6E-32 7.7E-37 261.3 27.3 229 64-330 86-321 (587)
40 PRK05306 infB translation init 100.0 1.2E-31 2.7E-36 263.1 26.1 230 63-330 288-523 (787)
41 PRK00741 prfC peptide chain re 100.0 8.9E-31 1.9E-35 249.2 28.4 253 63-330 8-360 (526)
42 PRK00007 elongation factor G; 100.0 7.6E-31 1.7E-35 259.0 28.8 250 63-330 8-374 (693)
43 PRK07560 elongation factor EF- 100.0 2.6E-31 5.7E-36 263.7 25.2 263 62-330 17-355 (731)
44 PRK12739 elongation factor G; 100.0 5.9E-31 1.3E-35 260.0 26.7 250 63-330 6-371 (691)
45 TIGR00503 prfC peptide chain r 100.0 2.9E-30 6.2E-35 245.8 28.5 253 63-330 9-361 (527)
46 TIGR00484 EF-G translation elo 100.0 2.5E-30 5.4E-35 255.7 28.2 252 63-330 8-372 (689)
47 PF00009 GTP_EFTU: Elongation 100.0 5.8E-31 1.3E-35 220.9 19.6 182 63-257 1-188 (188)
48 COG0480 FusA Translation elong 100.0 4.3E-30 9.3E-35 248.6 26.5 253 62-330 7-372 (697)
49 CHL00189 infB translation init 100.0 3.3E-30 7.2E-35 250.9 25.7 230 63-330 242-481 (742)
50 PRK13351 elongation factor G; 100.0 5.5E-30 1.2E-34 253.8 27.3 251 64-330 7-370 (687)
51 PRK04004 translation initiatio 100.0 9.6E-30 2.1E-34 245.1 27.7 242 64-320 5-285 (586)
52 TIGR00491 aIF-2 translation in 100.0 1.1E-29 2.4E-34 243.6 26.8 227 65-320 4-283 (590)
53 KOG0459 Polypeptide release fa 100.0 5.6E-31 1.2E-35 231.5 15.3 260 63-329 77-365 (501)
54 PRK12740 elongation factor G; 100.0 7.9E-29 1.7E-33 245.2 26.1 247 71-330 1-353 (668)
55 COG4108 PrfC Peptide chain rel 100.0 8.3E-29 1.8E-33 220.2 19.5 250 65-329 12-361 (528)
56 TIGR00490 aEF-2 translation el 100.0 1.1E-28 2.4E-33 244.4 22.6 264 62-330 16-354 (720)
57 KOG1145 Mitochondrial translat 100.0 5.1E-28 1.1E-32 220.2 19.8 230 63-330 151-387 (683)
58 COG0532 InfB Translation initi 100.0 7.2E-28 1.6E-32 221.1 20.3 226 65-329 5-240 (509)
59 cd01883 EF1_alpha Eukaryotic e 100.0 1.6E-27 3.4E-32 204.6 19.4 190 67-256 1-217 (219)
60 PLN00116 translation elongatio 100.0 1.2E-26 2.7E-31 233.0 28.4 132 62-194 16-163 (843)
61 cd04166 CysN_ATPS CysN_ATPS su 100.0 3.1E-27 6.8E-32 201.2 18.2 188 67-256 1-206 (208)
62 PTZ00416 elongation factor 2; 100.0 4.7E-26 1E-30 228.4 28.0 132 62-194 16-157 (836)
63 KOG0465 Mitochondrial elongati 99.9 1.2E-27 2.7E-32 219.9 12.2 251 63-330 37-402 (721)
64 cd01891 TypA_BipA TypA (tyrosi 99.9 4.1E-26 8.9E-31 192.4 20.5 191 65-258 2-194 (194)
65 cd01888 eIF2_gamma eIF2-gamma 99.9 7.6E-26 1.6E-30 192.0 18.4 169 66-260 1-203 (203)
66 cd01885 EF2 EF2 (for archaea a 99.9 8.8E-26 1.9E-30 192.7 18.8 190 66-258 1-222 (222)
67 PRK14845 translation initiatio 99.9 2.8E-25 6.1E-30 222.7 25.3 213 77-318 473-738 (1049)
68 cd01886 EF-G Elongation factor 99.9 2E-25 4.4E-30 196.3 19.1 127 67-195 1-130 (270)
69 cd04165 GTPBP1_like GTPBP1-lik 99.9 2.1E-25 4.6E-30 191.1 18.3 176 67-257 1-223 (224)
70 cd01889 SelB_euk SelB subfamil 99.9 6.9E-25 1.5E-29 184.7 20.4 172 66-259 1-189 (192)
71 cd04168 TetM_like Tet(M)-like 99.9 4.8E-25 1E-29 190.7 19.6 180 67-258 1-237 (237)
72 cd00881 GTP_translation_factor 99.9 2.4E-24 5.3E-29 180.4 20.0 180 67-258 1-189 (189)
73 cd04169 RF3 RF3 subfamily. Pe 99.9 3.3E-24 7.2E-29 188.5 20.7 130 65-195 2-137 (267)
74 cd01890 LepA LepA subfamily. 99.9 5.9E-24 1.3E-28 176.8 19.4 174 66-258 1-179 (179)
75 KOG0466 Translation initiation 99.9 8E-26 1.7E-30 192.5 8.0 242 62-329 35-331 (466)
76 cd04171 SelB SelB subfamily. 99.9 1.2E-23 2.6E-28 172.0 20.0 161 67-253 2-163 (164)
77 cd04167 Snu114p Snu114p subfam 99.9 5.6E-23 1.2E-27 175.8 19.2 190 66-258 1-213 (213)
78 cd04170 EF-G_bact Elongation f 99.9 3.2E-22 7E-27 177.0 19.4 127 67-195 1-130 (268)
79 COG1159 Era GTPase [General fu 99.9 3.6E-22 7.7E-27 171.7 18.2 162 64-258 5-174 (298)
80 PF02421 FeoB_N: Ferrous iron 99.9 1.8E-22 4E-27 161.4 12.9 148 66-251 1-156 (156)
81 COG1160 Predicted GTPases [Gen 99.9 9E-22 1.9E-26 178.3 17.1 148 64-231 177-336 (444)
82 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.5E-21 5.4E-26 159.1 18.2 159 67-254 2-164 (168)
83 COG1160 Predicted GTPases [Gen 99.9 1.8E-21 3.8E-26 176.4 17.6 153 66-256 4-165 (444)
84 KOG0464 Elongation factor G [T 99.9 1.8E-23 3.8E-28 185.0 4.4 227 63-301 35-370 (753)
85 TIGR00436 era GTP-binding prot 99.9 4.8E-21 1E-25 169.6 19.5 157 67-258 2-166 (270)
86 KOG1144 Translation initiation 99.9 1.7E-21 3.6E-26 182.8 15.5 237 64-327 474-773 (1064)
87 TIGR03594 GTPase_EngA ribosome 99.9 1.1E-20 2.3E-25 178.6 18.4 148 64-231 171-329 (429)
88 PRK00093 GTP-binding protein D 99.9 5.2E-20 1.1E-24 174.1 20.5 147 64-231 172-329 (435)
89 cd01864 Rab19 Rab19 subfamily. 99.9 3.3E-20 7.1E-25 152.2 16.2 158 65-254 3-164 (165)
90 PRK15494 era GTPase Era; Provi 99.9 4.8E-20 1E-24 167.7 18.9 161 63-258 50-218 (339)
91 KOG0469 Elongation factor 2 [T 99.8 6.2E-20 1.3E-24 165.9 18.3 135 59-194 13-163 (842)
92 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2.4E-20 5.3E-25 153.2 14.3 161 67-253 1-166 (167)
93 PRK00089 era GTPase Era; Revie 99.8 1.9E-19 4E-24 161.5 20.6 161 64-257 4-172 (292)
94 cd01894 EngA1 EngA1 subfamily. 99.8 1.1E-19 2.3E-24 147.5 17.1 148 69-254 1-156 (157)
95 cd04154 Arl2 Arl2 subfamily. 99.8 5.5E-20 1.2E-24 152.1 15.7 157 62-253 11-172 (173)
96 cd01895 EngA2 EngA2 subfamily. 99.8 1.3E-19 2.9E-24 149.2 17.9 159 65-253 2-172 (174)
97 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 2.8E-19 6.1E-24 143.4 18.1 170 58-259 15-188 (221)
98 cd04124 RabL2 RabL2 subfamily. 99.8 1.1E-19 2.4E-24 148.6 15.6 154 66-255 1-157 (161)
99 TIGR03594 GTPase_EngA ribosome 99.8 1.9E-19 4.1E-24 170.1 19.3 154 67-258 1-162 (429)
100 KOG0092 GTPase Rab5/YPT51 and 99.8 6.3E-20 1.4E-24 147.1 12.7 165 63-259 3-170 (200)
101 cd01860 Rab5_related Rab5-rela 99.8 1.5E-19 3.2E-24 147.8 15.3 157 66-255 2-162 (163)
102 PRK03003 GTP-binding protein D 99.8 2.2E-19 4.7E-24 170.8 18.7 147 64-231 210-367 (472)
103 cd04106 Rab23_lke Rab23-like s 99.8 1.7E-19 3.6E-24 147.4 15.1 153 66-253 1-160 (162)
104 cd04145 M_R_Ras_like M-Ras/R-R 99.8 2.4E-19 5.2E-24 146.7 15.9 156 65-254 2-162 (164)
105 cd01865 Rab3 Rab3 subfamily. 99.8 1.8E-19 3.9E-24 147.9 14.8 157 66-255 2-162 (165)
106 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 1.9E-19 4E-24 152.7 15.1 158 66-255 1-167 (201)
107 cd04113 Rab4 Rab4 subfamily. 99.8 1.6E-19 3.4E-24 147.5 14.1 156 66-254 1-160 (161)
108 cd01898 Obg Obg subfamily. Th 99.8 3.4E-19 7.4E-24 146.7 15.3 153 67-254 2-169 (170)
109 cd04112 Rab26 Rab26 subfamily. 99.8 2.3E-19 5.1E-24 150.8 14.5 159 66-256 1-163 (191)
110 cd01897 NOG NOG1 is a nucleola 99.8 5.8E-19 1.3E-23 145.1 16.5 153 66-255 1-167 (168)
111 TIGR03598 GTPase_YsxC ribosome 99.8 1.2E-18 2.7E-23 144.9 18.6 148 62-231 15-175 (179)
112 cd01867 Rab8_Rab10_Rab13_like 99.8 3.9E-19 8.4E-24 146.2 15.4 157 65-254 3-163 (167)
113 cd01862 Rab7 Rab7 subfamily. 99.8 3.3E-19 7.2E-24 147.0 14.9 158 66-255 1-166 (172)
114 cd04116 Rab9 Rab9 subfamily. 99.8 6.1E-19 1.3E-23 145.3 16.3 157 64-253 4-168 (170)
115 cd01861 Rab6 Rab6 subfamily. 99.8 4.1E-19 8.8E-24 144.9 15.0 153 67-254 2-160 (161)
116 cd04157 Arl6 Arl6 subfamily. 99.8 3.1E-19 6.6E-24 145.7 14.3 154 67-253 1-161 (162)
117 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 3.8E-19 8.2E-24 146.0 14.8 157 65-254 2-162 (166)
118 cd01866 Rab2 Rab2 subfamily. 99.8 4.4E-19 9.6E-24 146.0 15.2 158 65-255 4-165 (168)
119 cd04119 RJL RJL (RabJ-Like) su 99.8 5E-19 1.1E-23 145.1 15.2 156 66-254 1-165 (168)
120 cd04138 H_N_K_Ras_like H-Ras/N 99.8 5.6E-19 1.2E-23 144.0 15.3 154 66-254 2-160 (162)
121 PRK03003 GTP-binding protein D 99.8 1.5E-18 3.2E-23 165.2 20.3 156 64-257 37-200 (472)
122 cd04114 Rab30 Rab30 subfamily. 99.8 4.1E-19 8.9E-24 146.1 14.5 157 63-254 5-167 (169)
123 smart00175 RAB Rab subfamily o 99.8 3.9E-19 8.4E-24 145.4 14.3 157 66-255 1-161 (164)
124 cd04136 Rap_like Rap-like subf 99.8 4.3E-19 9.4E-24 145.0 14.5 155 66-254 2-161 (163)
125 KOG0467 Translation elongation 99.8 2.1E-18 4.6E-23 162.9 20.7 130 63-193 7-136 (887)
126 cd04122 Rab14 Rab14 subfamily. 99.8 4.8E-19 1E-23 145.5 14.5 155 66-253 3-161 (166)
127 cd04149 Arf6 Arf6 subfamily. 99.8 7E-19 1.5E-23 144.8 15.4 155 64-253 8-167 (168)
128 smart00173 RAS Ras subfamily o 99.8 4.8E-19 1E-23 145.0 14.1 155 67-255 2-161 (164)
129 cd01868 Rab11_like Rab11-like. 99.8 7.2E-19 1.6E-23 144.1 15.1 156 66-254 4-163 (165)
130 cd00154 Rab Rab family. Rab G 99.8 8.4E-19 1.8E-23 142.0 15.4 154 66-252 1-158 (159)
131 cd04127 Rab27A Rab27a subfamil 99.8 8.1E-19 1.7E-23 146.0 15.5 158 64-254 3-175 (180)
132 cd04151 Arl1 Arl1 subfamily. 99.8 6.4E-19 1.4E-23 143.5 14.5 152 67-253 1-157 (158)
133 cd04163 Era Era subfamily. Er 99.8 4.9E-18 1.1E-22 138.6 19.7 157 65-254 3-167 (168)
134 cd04120 Rab12 Rab12 subfamily. 99.8 7.6E-19 1.6E-23 148.4 15.0 155 67-253 2-160 (202)
135 cd04140 ARHI_like ARHI subfami 99.8 9.1E-19 2E-23 143.7 14.9 154 66-253 2-162 (165)
136 cd01863 Rab18 Rab18 subfamily. 99.8 7E-19 1.5E-23 143.5 13.7 155 66-254 1-160 (161)
137 cd04150 Arf1_5_like Arf1-Arf5- 99.8 9.7E-19 2.1E-23 142.7 14.4 153 66-253 1-158 (159)
138 PRK04213 GTP-binding protein; 99.8 3.5E-18 7.6E-23 144.8 18.3 157 64-258 8-194 (201)
139 cd04175 Rap1 Rap1 subgroup. T 99.8 1.1E-18 2.3E-23 143.1 14.2 156 66-255 2-162 (164)
140 cd04118 Rab24 Rab24 subfamily. 99.8 9.5E-19 2E-23 147.3 14.1 161 66-255 1-165 (193)
141 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 1.6E-18 3.5E-23 143.5 15.1 154 65-253 15-173 (174)
142 cd04164 trmE TrmE (MnmE, ThdF, 99.8 3E-18 6.5E-23 138.8 16.3 146 66-254 2-155 (157)
143 cd04110 Rab35 Rab35 subfamily. 99.8 1.6E-18 3.5E-23 146.6 15.3 159 64-255 5-166 (199)
144 cd01879 FeoB Ferrous iron tran 99.8 8.3E-19 1.8E-23 142.5 13.0 147 70-254 1-155 (158)
145 cd00877 Ran Ran (Ras-related n 99.8 1.1E-18 2.3E-23 143.5 13.7 156 66-256 1-159 (166)
146 PTZ00369 Ras-like protein; Pro 99.8 1.3E-18 2.7E-23 146.1 14.3 159 63-255 3-166 (189)
147 PLN00223 ADP-ribosylation fact 99.8 1.8E-18 3.8E-23 144.1 15.1 158 63-255 15-177 (181)
148 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 1.6E-18 3.5E-23 143.0 14.7 159 67-255 2-164 (170)
149 cd04115 Rab33B_Rab33A Rab33B/R 99.8 2.9E-18 6.2E-23 141.4 16.2 160 65-254 2-167 (170)
150 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.2E-18 2.6E-23 141.8 13.6 152 67-253 1-157 (158)
151 smart00177 ARF ARF-like small 99.8 1.7E-18 3.6E-23 143.5 14.5 157 64-255 12-173 (175)
152 PRK00093 GTP-binding protein D 99.8 5E-18 1.1E-22 160.6 19.6 153 66-256 2-162 (435)
153 cd00879 Sar1 Sar1 subfamily. 99.8 1.5E-18 3.3E-23 145.7 14.3 157 63-254 17-189 (190)
154 PRK09518 bifunctional cytidyla 99.8 2.4E-18 5.1E-23 171.1 18.0 146 65-231 450-606 (712)
155 cd04121 Rab40 Rab40 subfamily. 99.8 2.1E-18 4.6E-23 144.3 14.9 157 64-253 5-164 (189)
156 PLN03118 Rab family protein; P 99.8 2.7E-18 5.8E-23 146.7 15.8 159 63-255 12-176 (211)
157 cd04158 ARD1 ARD1 subfamily. 99.8 1.5E-18 3.4E-23 142.9 13.7 155 67-256 1-161 (169)
158 smart00178 SAR Sar1p-like memb 99.8 4.4E-18 9.5E-23 142.2 16.4 157 63-254 15-183 (184)
159 KOG0084 GTPase Rab1/YPT1, smal 99.8 2E-18 4.4E-23 139.0 13.4 148 63-232 7-158 (205)
160 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 2.9E-18 6.4E-23 143.1 15.1 160 65-255 3-169 (183)
161 cd04176 Rap2 Rap2 subgroup. T 99.8 2.2E-18 4.7E-23 141.0 14.0 156 66-255 2-162 (163)
162 cd04144 Ras2 Ras2 subfamily. 99.8 1.6E-18 3.5E-23 145.6 13.5 155 67-255 1-162 (190)
163 PRK15467 ethanolamine utilizat 99.8 2.4E-18 5.2E-23 140.1 14.0 141 67-256 3-147 (158)
164 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 2.2E-18 4.8E-23 142.4 14.0 156 66-255 3-163 (172)
165 TIGR02528 EutP ethanolamine ut 99.8 1.8E-18 3.9E-23 138.3 13.1 136 67-252 2-141 (142)
166 PRK00454 engB GTP-binding prot 99.8 1.3E-17 2.8E-22 140.7 19.0 161 62-256 21-194 (196)
167 cd01874 Cdc42 Cdc42 subfamily. 99.8 6.3E-18 1.4E-22 140.1 16.5 158 66-253 2-172 (175)
168 cd01893 Miro1 Miro1 subfamily. 99.8 5.5E-18 1.2E-22 139.2 15.9 157 67-254 2-162 (166)
169 cd04109 Rab28 Rab28 subfamily. 99.8 3.1E-18 6.7E-23 146.7 15.0 157 66-256 1-166 (215)
170 PLN03110 Rab GTPase; Provision 99.8 3.2E-18 7E-23 146.6 15.0 159 64-255 11-173 (216)
171 cd04134 Rho3 Rho3 subfamily. 99.8 3.5E-18 7.5E-23 143.4 14.9 162 66-257 1-175 (189)
172 cd04155 Arl3 Arl3 subfamily. 99.8 4.4E-18 9.6E-23 140.5 15.2 158 61-253 10-172 (173)
173 cd04123 Rab21 Rab21 subfamily. 99.8 4.6E-18 9.9E-23 138.5 15.0 154 66-254 1-160 (162)
174 cd00157 Rho Rho (Ras homology) 99.8 2.4E-18 5.3E-23 141.7 13.4 158 66-253 1-170 (171)
175 COG0486 ThdF Predicted GTPase 99.8 3.7E-18 7.9E-23 155.4 15.6 155 63-257 215-377 (454)
176 PRK12298 obgE GTPase CgtA; Rev 99.8 5.6E-18 1.2E-22 156.2 17.2 157 66-256 160-333 (390)
177 PRK12299 obgE GTPase CgtA; Rev 99.8 7E-18 1.5E-22 152.6 17.5 157 65-256 158-328 (335)
178 cd01875 RhoG RhoG subfamily. 99.8 7.8E-18 1.7E-22 141.5 16.6 162 65-256 3-177 (191)
179 cd01871 Rac1_like Rac1-like su 99.8 5.5E-18 1.2E-22 140.3 15.4 158 66-253 2-172 (174)
180 cd04177 RSR1 RSR1 subgroup. R 99.8 4.1E-18 8.8E-23 140.2 14.5 157 66-255 2-163 (168)
181 COG0218 Predicted GTPase [Gene 99.8 2.6E-17 5.6E-22 134.5 18.7 160 64-255 23-196 (200)
182 PTZ00133 ADP-ribosylation fact 99.8 3.7E-18 8E-23 142.3 14.2 157 64-255 16-177 (182)
183 TIGR00231 small_GTP small GTP- 99.8 3.3E-18 7.1E-23 138.2 13.5 150 66-252 2-160 (161)
184 cd04139 RalA_RalB RalA/RalB su 99.8 4.5E-18 9.7E-23 139.0 14.3 156 66-255 1-161 (164)
185 cd04128 Spg1 Spg1p. Spg1p (se 99.8 8.3E-18 1.8E-22 140.2 16.0 160 66-255 1-165 (182)
186 PLN03071 GTP-binding nuclear p 99.8 4.2E-18 9.2E-23 146.1 14.4 158 63-255 11-171 (219)
187 PRK09518 bifunctional cytidyla 99.8 9.9E-18 2.1E-22 166.7 19.2 156 64-257 274-437 (712)
188 cd01878 HflX HflX subfamily. 99.8 7.7E-18 1.7E-22 143.1 15.8 152 63-254 39-203 (204)
189 cd04133 Rop_like Rop subfamily 99.8 3.9E-18 8.4E-23 141.1 13.4 160 66-255 2-172 (176)
190 smart00174 RHO Rho (Ras homolo 99.8 6E-18 1.3E-22 139.9 14.5 158 68-255 1-171 (174)
191 cd04135 Tc10 TC10 subfamily. 99.8 6.5E-18 1.4E-22 139.7 14.5 158 66-253 1-171 (174)
192 KOG0394 Ras-related GTPase [Ge 99.8 7.8E-18 1.7E-22 133.8 13.8 152 62-233 6-165 (210)
193 TIGR03156 GTP_HflX GTP-binding 99.8 1.3E-17 2.8E-22 152.1 17.3 149 64-254 188-350 (351)
194 cd04161 Arl2l1_Arl13_like Arl2 99.8 8.3E-18 1.8E-22 138.3 14.5 158 67-252 1-165 (167)
195 cd04117 Rab15 Rab15 subfamily. 99.8 1E-17 2.2E-22 136.9 14.9 154 67-253 2-159 (161)
196 TIGR02729 Obg_CgtA Obg family 99.8 1.5E-17 3.2E-22 150.4 17.3 156 64-255 156-328 (329)
197 PF10662 PduV-EutP: Ethanolami 99.8 4.1E-18 8.9E-23 133.3 11.8 136 67-252 3-142 (143)
198 PRK05291 trmE tRNA modificatio 99.8 5.6E-18 1.2E-22 159.7 15.0 149 64-256 214-370 (449)
199 PRK09554 feoB ferrous iron tra 99.8 6.5E-18 1.4E-22 167.5 16.1 153 65-255 3-167 (772)
200 cd04132 Rho4_like Rho4-like su 99.8 7.6E-18 1.6E-22 141.1 14.2 160 66-255 1-166 (187)
201 cd04101 RabL4 RabL4 (Rab-like4 99.8 1.2E-17 2.7E-22 136.6 15.1 158 66-254 1-162 (164)
202 COG2229 Predicted GTPase [Gene 99.8 3.9E-17 8.4E-22 130.5 17.3 167 63-254 8-176 (187)
203 cd04156 ARLTS1 ARLTS1 subfamil 99.8 1.2E-17 2.7E-22 136.0 14.8 152 67-253 1-159 (160)
204 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 9E-18 1.9E-22 139.8 14.1 161 63-253 3-177 (182)
205 cd01882 BMS1 Bms1. Bms1 is an 99.8 1.5E-16 3.2E-21 136.9 22.0 185 62-276 36-221 (225)
206 cd04125 RabA_like RabA-like su 99.8 1.1E-17 2.3E-22 140.3 14.6 143 66-231 1-147 (188)
207 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 6.2E-18 1.3E-22 138.6 12.8 157 68-253 2-163 (164)
208 cd01892 Miro2 Miro2 subfamily. 99.8 8.8E-18 1.9E-22 138.4 13.7 161 63-255 2-165 (169)
209 cd01870 RhoA_like RhoA-like su 99.8 1.4E-17 3E-22 137.9 15.0 159 66-254 2-173 (175)
210 cd04159 Arl10_like Arl10-like 99.8 9.8E-18 2.1E-22 135.8 13.7 152 68-253 2-158 (159)
211 PLN03108 Rab family protein; P 99.8 1.5E-17 3.3E-22 141.9 15.5 144 65-231 6-153 (210)
212 cd04111 Rab39 Rab39 subfamily. 99.8 1.6E-17 3.4E-22 141.8 15.5 159 65-255 2-165 (211)
213 cd04142 RRP22 RRP22 subfamily. 99.8 1.2E-17 2.5E-22 141.1 14.5 156 66-255 1-173 (198)
214 TIGR00450 mnmE_trmE_thdF tRNA 99.8 1.7E-17 3.8E-22 155.5 16.8 137 63-230 201-345 (442)
215 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 1.4E-17 3E-22 143.2 14.6 149 63-231 11-172 (232)
216 cd04126 Rab20 Rab20 subfamily. 99.8 9.9E-18 2.2E-22 143.3 13.6 158 66-253 1-187 (220)
217 cd04143 Rhes_like Rhes_like su 99.8 1.5E-17 3.3E-22 144.8 14.8 160 66-258 1-173 (247)
218 KOG0078 GTP-binding protein SE 99.8 2.8E-17 6.1E-22 134.3 15.2 148 63-233 10-161 (207)
219 KOG1423 Ras-like GTPase ERA [C 99.8 5.6E-17 1.2E-21 139.0 17.6 172 60-257 67-272 (379)
220 cd04137 RheB Rheb (Ras Homolog 99.8 1.7E-17 3.8E-22 138.0 14.3 155 66-254 2-161 (180)
221 cd04131 Rnd Rnd subfamily. Th 99.8 1.5E-17 3.2E-22 138.2 13.8 159 66-253 2-173 (178)
222 KOG0095 GTPase Rab30, small G 99.8 1.7E-17 3.8E-22 127.0 12.9 159 65-256 7-169 (213)
223 PRK12296 obgE GTPase CgtA; Rev 99.8 3.2E-17 6.9E-22 153.9 17.3 142 64-231 158-325 (500)
224 cd04130 Wrch_1 Wrch-1 subfamil 99.8 9E-18 2E-22 138.9 12.3 155 66-252 1-170 (173)
225 KOG0468 U5 snRNP-specific prot 99.8 1.6E-16 3.5E-21 148.1 21.5 131 63-194 126-262 (971)
226 cd04147 Ras_dva Ras-dva subfam 99.8 2.3E-17 4.9E-22 139.5 14.4 158 67-256 1-163 (198)
227 cd04146 RERG_RasL11_like RERG/ 99.7 1.5E-17 3.3E-22 136.3 12.6 155 67-254 1-162 (165)
228 cd00876 Ras Ras family. The R 99.7 3.3E-17 7.2E-22 133.1 14.6 154 67-254 1-159 (160)
229 cd00880 Era_like Era (E. coli 99.7 5.5E-17 1.2E-21 131.1 15.5 154 70-254 1-162 (163)
230 PRK12297 obgE GTPase CgtA; Rev 99.7 6.5E-17 1.4E-21 149.9 16.7 151 66-255 159-326 (424)
231 cd01881 Obg_like The Obg-like 99.7 4.7E-17 1E-21 134.6 13.8 150 70-254 1-175 (176)
232 PF00025 Arf: ADP-ribosylation 99.7 5.7E-17 1.2E-21 134.3 14.0 159 61-254 10-174 (175)
233 cd04148 RGK RGK subfamily. Th 99.7 5.1E-17 1.1E-21 139.6 13.7 156 66-255 1-162 (221)
234 KOG0098 GTPase Rab2, small G p 99.7 8.1E-17 1.8E-21 128.3 13.5 146 64-231 5-153 (216)
235 smart00176 RAN Ran (Ras-relate 99.7 4.6E-17 1E-21 137.3 12.9 150 71-255 1-153 (200)
236 cd01876 YihA_EngB The YihA (En 99.7 3.4E-16 7.3E-21 128.1 17.5 155 68-254 2-169 (170)
237 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 1.7E-16 3.7E-21 135.8 16.0 159 66-253 2-173 (222)
238 PRK11058 GTPase HflX; Provisio 99.7 2E-16 4.3E-21 147.6 16.3 151 66-256 198-362 (426)
239 KOG0080 GTPase Rab18, small G 99.7 1.1E-16 2.3E-21 124.3 11.6 145 64-231 10-159 (209)
240 COG0370 FeoB Fe2+ transport sy 99.7 2.1E-16 4.5E-21 149.8 15.3 154 65-256 3-164 (653)
241 PF00071 Ras: Ras family; Int 99.7 3.9E-16 8.4E-21 127.4 13.4 155 67-253 1-158 (162)
242 cd04103 Centaurin_gamma Centau 99.7 5.2E-16 1.1E-20 126.3 13.7 151 66-253 1-156 (158)
243 cd04104 p47_IIGP_like p47 (47- 99.7 7.5E-16 1.6E-20 130.1 14.8 166 66-258 2-186 (197)
244 TIGR00437 feoB ferrous iron tr 99.7 2.6E-16 5.6E-21 152.7 13.6 145 72-254 1-153 (591)
245 PF01926 MMR_HSR1: 50S ribosom 99.7 6E-16 1.3E-20 119.3 12.4 107 67-190 1-116 (116)
246 PRK09866 hypothetical protein; 99.7 2.3E-15 4.9E-20 142.3 17.5 115 127-254 229-351 (741)
247 cd00882 Ras_like_GTPase Ras-li 99.7 9.9E-16 2.1E-20 122.4 13.1 148 70-252 1-156 (157)
248 cd04129 Rho2 Rho2 subfamily. 99.7 5.5E-16 1.2E-20 129.9 12.0 160 66-255 2-172 (187)
249 KOG0073 GTP-binding ADP-ribosy 99.7 3.2E-15 6.9E-20 116.7 14.8 144 62-231 13-163 (185)
250 KOG0087 GTPase Rab11/YPT3, sma 99.7 4.8E-16 1.1E-20 126.6 10.6 147 63-232 12-162 (222)
251 cd01850 CDC_Septin CDC/Septin. 99.7 3.2E-14 6.8E-19 125.9 22.2 150 65-228 4-184 (276)
252 PTZ00132 GTP-binding nuclear p 99.7 3E-15 6.6E-20 128.2 15.1 160 61-255 5-167 (215)
253 cd01896 DRG The developmentall 99.7 3.8E-15 8.2E-20 128.8 15.7 82 67-164 2-90 (233)
254 cd01873 RhoBTB RhoBTB subfamil 99.7 1.9E-15 4.2E-20 127.1 13.4 158 65-253 2-193 (195)
255 COG3596 Predicted GTPase [Gene 99.7 5.6E-15 1.2E-19 125.7 16.1 168 62-258 36-224 (296)
256 COG1084 Predicted GTPase [Gene 99.6 2.4E-15 5.1E-20 130.9 12.7 117 64-197 167-296 (346)
257 KOG0093 GTPase Rab3, small G p 99.6 3.7E-15 8E-20 114.1 11.5 145 66-233 22-170 (193)
258 KOG1489 Predicted GTP-binding 99.6 5.3E-15 1.1E-19 127.7 13.3 154 64-254 195-365 (366)
259 cd04102 RabL3 RabL3 (Rab-like3 99.6 1.7E-14 3.7E-19 121.7 16.1 145 66-230 1-174 (202)
260 cd04105 SR_beta Signal recogni 99.6 1.3E-14 2.9E-19 122.9 15.4 127 67-211 2-142 (203)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 2.2E-14 4.8E-19 121.0 15.9 167 66-257 1-185 (196)
262 KOG0075 GTP-binding ADP-ribosy 99.6 3.8E-15 8.2E-20 114.1 9.4 154 65-255 20-181 (186)
263 KOG0079 GTP-binding protein H- 99.6 6.2E-15 1.4E-19 113.0 10.4 144 66-232 9-155 (198)
264 PLN00023 GTP-binding protein; 99.6 1.1E-14 2.4E-19 129.1 13.3 139 63-216 19-189 (334)
265 KOG0086 GTPase Rab4, small G p 99.6 3.6E-14 7.8E-19 109.4 14.3 144 66-231 10-156 (214)
266 COG2262 HflX GTPases [General 99.6 1.7E-14 3.7E-19 129.3 14.4 154 63-256 190-356 (411)
267 COG1163 DRG Predicted GTPase [ 99.6 1.8E-14 3.8E-19 125.0 11.8 86 63-164 61-153 (365)
268 KOG1191 Mitochondrial GTPase [ 99.6 1.5E-14 3.3E-19 131.7 11.3 162 63-254 266-448 (531)
269 KOG0083 GTPase Rab26/Rab37, sm 99.6 9.4E-16 2E-20 115.4 2.4 142 70-233 2-147 (192)
270 PRK13768 GTPase; Provisional 99.6 1.6E-13 3.5E-18 120.0 16.1 178 66-258 3-249 (253)
271 KOG0081 GTPase Rab27, small G 99.5 1.5E-14 3.3E-19 112.2 6.4 144 66-231 10-166 (219)
272 PF08477 Miro: Miro-like prote 99.5 2.2E-14 4.8E-19 110.9 7.3 113 67-192 1-119 (119)
273 COG1100 GTPase SAR1 and relate 99.5 3.2E-13 7E-18 115.8 15.0 116 65-197 5-127 (219)
274 KOG0070 GTP-binding ADP-ribosy 99.5 5.8E-14 1.3E-18 112.6 8.9 161 61-256 13-178 (181)
275 PF09439 SRPRB: Signal recogni 99.5 2.2E-13 4.9E-18 111.5 12.0 126 66-211 4-145 (181)
276 PRK09435 membrane ATPase/prote 99.5 5.1E-13 1.1E-17 120.1 15.4 176 62-256 53-260 (332)
277 KOG0091 GTPase Rab39, small G 99.5 4.5E-13 9.8E-18 104.6 12.7 147 65-232 8-159 (213)
278 KOG0076 GTP-binding ADP-ribosy 99.5 2.6E-13 5.6E-18 107.2 11.1 170 60-256 12-187 (197)
279 KOG0088 GTPase Rab21, small G 99.5 8.6E-14 1.9E-18 108.0 7.6 159 63-254 11-173 (218)
280 COG5192 BMS1 GTP-binding prote 99.5 4E-12 8.6E-17 117.3 19.5 223 63-316 67-301 (1077)
281 cd03694 GTPBP_II Domain II of 99.5 2.2E-13 4.8E-18 98.9 9.1 65 266-330 1-65 (87)
282 COG0536 Obg Predicted GTPase [ 99.5 5.2E-13 1.1E-17 116.9 12.7 138 66-231 160-318 (369)
283 KOG0097 GTPase Rab14, small G 99.5 2.6E-12 5.7E-17 97.8 14.7 145 65-231 11-158 (215)
284 cd01853 Toc34_like Toc34-like 99.5 4.8E-12 1E-16 110.0 18.3 122 60-196 26-164 (249)
285 cd03693 EF1_alpha_II EF1_alpha 99.5 4E-13 8.6E-18 98.5 9.6 64 263-330 2-65 (91)
286 KOG0395 Ras-related GTPase [Ge 99.5 8.8E-13 1.9E-17 110.6 12.2 143 65-231 3-150 (196)
287 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 8.2E-12 1.8E-16 106.8 17.4 146 67-230 1-161 (232)
288 KOG0090 Signal recognition par 99.4 2.7E-12 5.9E-17 105.0 13.5 130 63-211 36-178 (238)
289 PF05049 IIGP: Interferon-indu 99.4 1.4E-12 3E-17 118.1 12.6 169 63-259 33-221 (376)
290 PF03029 ATP_bind_1: Conserved 99.4 1.7E-12 3.7E-17 112.2 12.6 168 70-253 1-234 (238)
291 cd03698 eRF3_II_like eRF3_II_l 99.4 1.3E-12 2.8E-17 94.1 9.8 61 265-330 1-61 (83)
292 cd01899 Ygr210 Ygr210 subfamil 99.4 6.8E-12 1.5E-16 112.7 16.3 88 68-163 1-111 (318)
293 COG4917 EutP Ethanolamine util 99.4 1.4E-12 3E-17 97.5 9.8 138 67-254 3-144 (148)
294 PTZ00099 rab6; Provisional 99.4 2.9E-12 6.4E-17 106.0 12.3 119 121-258 22-144 (176)
295 KOG0052 Translation elongation 99.4 1.9E-13 4.1E-18 121.9 4.8 136 61-196 3-157 (391)
296 KOG4252 GTP-binding protein [S 99.4 1.8E-13 3.9E-18 108.4 4.1 146 65-233 20-168 (246)
297 KOG1490 GTP-binding protein CR 99.4 1.9E-13 4.1E-18 124.5 4.0 196 11-231 113-326 (620)
298 TIGR02836 spore_IV_A stage IV 99.4 2.4E-11 5.3E-16 109.8 15.4 173 61-256 13-237 (492)
299 PF04548 AIG1: AIG1 family; I 99.3 3.3E-11 7.2E-16 102.8 15.1 166 66-255 1-185 (212)
300 PF03308 ArgK: ArgK protein; 99.3 1.3E-11 2.8E-16 105.3 12.3 156 62-231 26-215 (266)
301 cd04089 eRF3_II eRF3_II: domai 99.3 9.4E-12 2E-16 89.3 9.8 60 265-330 1-60 (82)
302 KOG0071 GTP-binding ADP-ribosy 99.3 3.3E-11 7.1E-16 91.9 12.9 158 63-255 15-177 (180)
303 cd03696 selB_II selB_II: this 99.3 7.6E-12 1.6E-16 90.1 9.0 61 266-330 1-61 (83)
304 cd03697 EFTU_II EFTU_II: Elong 99.3 4.6E-12 9.9E-17 92.0 7.7 63 266-330 1-63 (87)
305 PF00350 Dynamin_N: Dynamin fa 99.3 7E-12 1.5E-16 103.0 9.4 65 127-191 100-168 (168)
306 TIGR00750 lao LAO/AO transport 99.3 9.9E-11 2.1E-15 105.1 17.2 173 63-254 32-236 (300)
307 PRK09602 translation-associate 99.3 6.9E-11 1.5E-15 109.4 16.5 81 66-162 2-113 (396)
308 PF00735 Septin: Septin; Inte 99.3 5.9E-11 1.3E-15 105.0 15.3 143 65-216 4-176 (281)
309 KOG1532 GTPase XAB1, interacts 99.3 7.6E-11 1.6E-15 100.2 14.0 133 63-196 17-196 (366)
310 TIGR00073 hypB hydrogenase acc 99.3 1.1E-10 2.5E-15 99.2 13.9 167 63-254 20-205 (207)
311 TIGR00991 3a0901s02IAP34 GTP-b 99.3 2.7E-10 5.8E-15 100.8 16.2 119 62-195 35-167 (313)
312 COG1703 ArgK Putative periplas 99.3 9.3E-11 2E-15 101.4 12.8 180 61-251 47-256 (323)
313 KOG0393 Ras-related small GTPa 99.3 1.9E-11 4.2E-16 100.6 8.2 148 64-231 3-164 (198)
314 cd03695 CysN_NodQ_II CysN_NodQ 99.2 5.8E-11 1.2E-15 84.9 9.2 61 266-330 1-61 (81)
315 COG5019 CDC3 Septin family pro 99.2 3.3E-10 7.1E-15 100.6 15.0 147 63-224 21-199 (373)
316 KOG0074 GTP-binding ADP-ribosy 99.2 6.1E-11 1.3E-15 90.6 8.9 144 63-231 15-164 (185)
317 TIGR00101 ureG urease accessor 99.2 1.3E-10 2.8E-15 98.0 11.5 165 66-255 2-195 (199)
318 smart00053 DYNc Dynamin, GTPas 99.2 1.5E-10 3.1E-15 99.8 11.0 68 128-196 125-207 (240)
319 COG0378 HypB Ni2+-binding GTPa 99.2 5E-11 1.1E-15 97.0 7.3 164 65-254 13-199 (202)
320 PRK10463 hydrogenase nickel in 99.2 2.5E-10 5.3E-15 100.3 12.1 166 63-253 102-286 (290)
321 KOG0072 GTP-binding ADP-ribosy 99.2 3.1E-11 6.7E-16 92.5 5.5 158 64-256 17-179 (182)
322 PTZ00258 GTP-binding protein; 99.2 6.5E-10 1.4E-14 102.0 14.9 85 62-162 18-126 (390)
323 PRK09601 GTP-binding protein Y 99.2 9.2E-10 2E-14 99.9 15.0 81 66-162 3-107 (364)
324 KOG1547 Septin CDC10 and relat 99.1 1.7E-09 3.7E-14 90.3 13.9 143 63-216 44-218 (336)
325 cd03688 eIF2_gamma_II eIF2_gam 99.1 7.2E-10 1.6E-14 81.8 9.4 68 262-329 2-85 (113)
326 KOG0077 Vesicle coat complex C 99.1 3.7E-10 8.1E-15 88.8 7.5 114 63-196 18-136 (193)
327 TIGR00993 3a0901s04IAP86 chlor 99.0 1.1E-08 2.4E-13 98.0 16.8 116 65-195 118-250 (763)
328 KOG3883 Ras family small GTPas 99.0 7.6E-09 1.6E-13 80.3 12.6 160 65-259 9-178 (198)
329 KOG2655 Septin family protein 99.0 7.5E-09 1.6E-13 92.8 13.9 144 63-216 19-192 (366)
330 KOG1673 Ras GTPases [General f 99.0 5.4E-09 1.2E-13 81.3 10.7 152 61-233 16-173 (205)
331 KOG0410 Predicted GTP binding 99.0 4.1E-09 8.9E-14 91.8 10.2 151 63-256 176-341 (410)
332 KOG2486 Predicted GTPase [Gene 98.9 8E-09 1.7E-13 88.3 10.7 114 63-195 134-262 (320)
333 COG3640 CooC CO dehydrogenase 98.9 1E-08 2.2E-13 85.9 11.1 65 127-194 133-198 (255)
334 KOG1486 GTP-binding protein DR 98.9 1.6E-08 3.4E-13 85.2 12.0 86 63-164 60-152 (364)
335 KOG0096 GTPase Ran/TC4/GSP1 (n 98.9 3E-09 6.6E-14 85.6 6.3 146 63-233 8-156 (216)
336 KOG3886 GTP-binding protein [S 98.9 2.4E-08 5.1E-13 83.1 11.3 116 66-196 5-131 (295)
337 KOG1954 Endocytosis/signaling 98.9 3.8E-08 8.2E-13 87.3 13.1 138 65-203 58-233 (532)
338 KOG0448 Mitofusin 1 GTPase, in 98.9 1.4E-08 3E-13 96.4 10.8 102 128-231 206-311 (749)
339 cd01900 YchF YchF subfamily. 98.9 8.1E-09 1.7E-13 90.8 8.4 79 68-162 1-103 (274)
340 KOG1707 Predicted Ras related/ 98.8 1.3E-08 2.8E-13 95.2 9.2 118 62-196 6-130 (625)
341 PRK10416 signal recognition pa 98.8 5.1E-07 1.1E-11 81.5 17.1 148 65-227 114-293 (318)
342 cd00066 G-alpha G protein alph 98.8 1.6E-07 3.5E-12 84.9 14.0 74 121-195 154-242 (317)
343 TIGR01425 SRP54_euk signal rec 98.8 1.1E-07 2.5E-12 88.2 13.2 127 65-195 100-253 (429)
344 COG0012 Predicted GTPase, prob 98.8 1.1E-07 2.4E-12 85.4 12.5 89 66-163 3-109 (372)
345 cd01859 MJ1464 MJ1464. This f 98.8 9.4E-08 2E-12 77.4 10.9 92 145-257 6-97 (156)
346 PF00448 SRP54: SRP54-type pro 98.7 5.6E-08 1.2E-12 81.6 9.0 128 66-196 2-155 (196)
347 cd03692 mtIF2_IVc mtIF2_IVc: t 98.7 9.8E-08 2.1E-12 68.6 9.0 62 268-330 3-64 (84)
348 smart00275 G_alpha G protein a 98.7 4E-07 8.8E-12 83.1 14.6 75 120-195 176-265 (342)
349 TIGR00064 ftsY signal recognit 98.7 2.8E-07 6.1E-12 81.4 13.1 128 65-196 72-232 (272)
350 cd03115 SRP The signal recogni 98.7 3.4E-07 7.3E-12 75.5 12.7 127 67-196 2-154 (173)
351 cd01858 NGP_1 NGP-1. Autoanti 98.7 5.7E-08 1.2E-12 78.8 7.9 57 64-138 101-157 (157)
352 PRK14974 cell division protein 98.7 4.5E-07 9.7E-12 82.1 13.6 129 64-196 139-294 (336)
353 cd03114 ArgK-like The function 98.7 2.1E-07 4.5E-12 74.6 10.1 117 68-192 2-148 (148)
354 cd04178 Nucleostemin_like Nucl 98.6 8.7E-08 1.9E-12 78.8 7.4 57 64-138 116-172 (172)
355 PRK14722 flhF flagellar biosyn 98.6 3E-07 6.5E-12 84.1 11.6 129 65-195 137-295 (374)
356 cd01342 Translation_Factor_II_ 98.6 3E-07 6.5E-12 65.3 9.1 63 266-330 1-63 (83)
357 PF02492 cobW: CobW/HypB/UreG, 98.6 4.6E-07 9.9E-12 75.1 10.8 140 67-209 2-169 (178)
358 PRK11889 flhF flagellar biosyn 98.6 3.4E-07 7.4E-12 83.5 10.7 129 65-196 241-392 (436)
359 cd01855 YqeH YqeH. YqeH is an 98.6 4E-07 8.7E-12 76.3 9.7 106 136-256 19-125 (190)
360 cd01851 GBP Guanylate-binding 98.5 1.3E-06 2.8E-11 75.1 12.4 86 63-163 5-103 (224)
361 cd01858 NGP_1 NGP-1. Autoanti 98.5 5.2E-07 1.1E-11 73.2 9.3 89 146-254 3-93 (157)
362 cd01856 YlqF YlqF. Proteins o 98.5 7.9E-07 1.7E-11 73.2 10.1 99 135-256 2-101 (171)
363 KOG0082 G-protein alpha subuni 98.5 5.8E-06 1.3E-10 74.4 16.1 80 115-195 182-276 (354)
364 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 1E-06 2.2E-11 70.1 9.7 78 143-231 3-82 (141)
365 KOG1534 Putative transcription 98.5 1.8E-06 4E-11 71.1 11.1 126 67-196 5-179 (273)
366 PF03193 DUF258: Protein of un 98.5 1.3E-07 2.7E-12 76.1 4.3 64 66-141 36-100 (161)
367 TIGR03596 GTPase_YlqF ribosome 98.5 1.1E-06 2.4E-11 78.1 10.7 98 136-256 5-103 (276)
368 PRK10867 signal recognition pa 98.5 7.3E-06 1.6E-10 76.7 16.5 127 65-195 100-254 (433)
369 KOG1487 GTP-binding protein DR 98.5 3.5E-07 7.5E-12 77.6 6.8 84 66-165 60-150 (358)
370 KOG3905 Dynein light intermedi 98.5 2.3E-06 4.9E-11 75.0 11.9 61 179-255 221-289 (473)
371 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 3.5E-07 7.6E-12 72.8 6.5 54 67-138 85-138 (141)
372 KOG1533 Predicted GTPase [Gene 98.5 1.8E-06 4E-11 72.3 10.6 127 68-195 5-177 (290)
373 cd01855 YqeH YqeH. YqeH is an 98.5 2.3E-07 5.1E-12 77.7 5.4 63 66-138 128-190 (190)
374 KOG4423 GTP-binding protein-li 98.5 5E-08 1.1E-12 78.4 1.1 147 66-233 26-181 (229)
375 cd03112 CobW_like The function 98.4 1.2E-06 2.5E-11 71.2 8.7 65 127-193 86-158 (158)
376 cd03110 Fer4_NifH_child This p 98.4 1.2E-05 2.7E-10 66.5 14.9 81 126-215 91-171 (179)
377 PRK00771 signal recognition pa 98.4 3.6E-06 7.9E-11 78.9 12.8 128 64-195 94-246 (437)
378 COG1161 Predicted GTPases [Gen 98.4 5.6E-07 1.2E-11 81.5 7.1 57 63-137 130-186 (322)
379 cd01849 YlqF_related_GTPase Yl 98.4 4.6E-07 1E-11 73.3 5.9 58 63-138 98-155 (155)
380 cd02036 MinD Bacterial cell di 98.4 3.2E-06 7E-11 69.8 11.1 122 70-195 5-128 (179)
381 PRK12726 flagellar biosynthesi 98.4 2E-06 4.3E-11 78.3 10.2 128 65-195 206-356 (407)
382 cd01849 YlqF_related_GTPase Yl 98.4 2.2E-06 4.7E-11 69.4 9.4 81 153-253 1-82 (155)
383 PRK12727 flagellar biosynthesi 98.4 7.2E-06 1.6E-10 77.7 13.9 128 65-195 350-498 (559)
384 TIGR00157 ribosome small subun 98.4 1.3E-06 2.8E-11 76.1 8.4 88 146-253 31-120 (245)
385 PRK12288 GTPase RsgA; Reviewed 98.4 5.5E-07 1.2E-11 82.1 6.3 64 67-141 207-270 (347)
386 PF14578 GTP_EFTU_D4: Elongati 98.4 7.9E-06 1.7E-10 57.3 10.5 59 264-330 3-61 (81)
387 PRK09563 rbgA GTPase YlqF; Rev 98.4 2.1E-06 4.6E-11 76.7 9.7 99 135-256 7-106 (287)
388 PRK09563 rbgA GTPase YlqF; Rev 98.3 1.2E-06 2.5E-11 78.4 7.3 57 64-138 120-176 (287)
389 cd03691 BipA_TypA_II BipA_TypA 98.3 4.1E-06 8.9E-11 60.5 8.8 64 266-330 1-68 (86)
390 cd03690 Tet_II Tet_II: This su 98.3 3.3E-06 7.1E-11 60.9 8.1 63 263-330 1-67 (85)
391 TIGR03596 GTPase_YlqF ribosome 98.3 1.1E-06 2.4E-11 78.1 6.7 57 64-138 117-173 (276)
392 COG1419 FlhF Flagellar GTP-bin 98.3 4.6E-06 9.9E-11 76.1 10.5 130 64-196 202-353 (407)
393 COG1162 Predicted GTPases [Gen 98.3 6.4E-07 1.4E-11 78.7 4.7 63 67-141 166-229 (301)
394 PRK12289 GTPase RsgA; Reviewed 98.3 8.7E-07 1.9E-11 80.9 5.6 64 67-141 174-237 (352)
395 PRK06731 flhF flagellar biosyn 98.3 6.7E-06 1.5E-10 72.3 10.9 126 66-196 76-226 (270)
396 cd02038 FleN-like FleN is a me 98.3 1.2E-05 2.7E-10 63.7 11.3 121 70-213 5-126 (139)
397 cd01856 YlqF YlqF. Proteins o 98.3 2.2E-06 4.8E-11 70.5 7.3 57 64-138 114-170 (171)
398 TIGR00959 ffh signal recogniti 98.3 2.9E-05 6.4E-10 72.7 15.4 127 65-195 99-253 (428)
399 PRK12724 flagellar biosynthesi 98.3 3.9E-06 8.4E-11 77.5 9.1 129 65-196 223-374 (432)
400 COG0523 Putative GTPases (G3E 98.3 6.3E-06 1.4E-10 74.2 10.2 151 67-228 3-184 (323)
401 PRK12289 GTPase RsgA; Reviewed 98.3 6.2E-06 1.3E-10 75.4 10.2 85 148-253 86-172 (352)
402 cd04092 mtEFG2_II_like mtEFG2_ 98.3 4.6E-06 1E-10 59.8 7.6 61 266-330 1-65 (83)
403 PRK12723 flagellar biosynthesi 98.3 7.4E-06 1.6E-10 75.7 10.8 129 65-196 174-327 (388)
404 PF09547 Spore_IV_A: Stage IV 98.3 3.6E-05 7.8E-10 70.3 14.8 177 60-256 12-237 (492)
405 TIGR00157 ribosome small subun 98.2 1.5E-06 3.3E-11 75.7 5.6 62 66-140 121-183 (245)
406 TIGR03597 GTPase_YqeH ribosome 98.2 7.3E-06 1.6E-10 75.5 10.3 101 138-253 50-150 (360)
407 cd04088 EFG_mtEFG_II EFG_mtEFG 98.2 6.3E-06 1.4E-10 59.1 7.8 60 267-330 2-65 (83)
408 PF05783 DLIC: Dynein light in 98.2 5E-05 1.1E-09 71.8 15.7 60 180-255 196-263 (472)
409 COG0541 Ffh Signal recognition 98.2 8.4E-06 1.8E-10 74.6 10.1 128 63-195 98-253 (451)
410 TIGR00092 GTP-binding protein 98.2 2.8E-06 6.1E-11 77.4 7.1 90 66-163 3-109 (368)
411 PRK14723 flhF flagellar biosyn 98.2 2.4E-05 5.1E-10 77.6 14.0 128 66-196 186-338 (767)
412 PF03144 GTP_EFTU_D2: Elongati 98.2 7E-06 1.5E-10 57.4 7.7 49 280-329 1-51 (74)
413 cd03111 CpaE_like This protein 98.2 1.6E-05 3.4E-10 59.9 9.7 97 71-190 6-106 (106)
414 PRK05703 flhF flagellar biosyn 98.2 3.1E-05 6.6E-10 72.8 13.5 125 66-195 222-371 (424)
415 PRK00098 GTPase RsgA; Reviewed 98.2 1.1E-05 2.5E-10 72.4 9.9 84 149-252 78-163 (298)
416 PRK13796 GTPase YqeH; Provisio 98.2 3E-06 6.4E-11 78.2 6.0 62 65-139 160-221 (365)
417 cd03699 lepA_II lepA_II: This 98.2 1E-05 2.3E-10 58.4 7.6 61 266-330 1-64 (86)
418 PRK11537 putative GTP-binding 98.1 3.6E-05 7.8E-10 69.6 12.2 67 128-196 91-165 (318)
419 cd04091 mtEFG1_II_like mtEFG1_ 98.1 1.7E-05 3.7E-10 56.6 8.0 59 267-330 2-64 (81)
420 TIGR03597 GTPase_YqeH ribosome 98.1 4.1E-06 8.9E-11 77.2 6.0 116 66-195 155-280 (360)
421 PF00503 G-alpha: G-protein al 98.1 1.3E-05 2.8E-10 74.9 9.1 77 118-195 225-317 (389)
422 KOG0780 Signal recognition par 98.1 2E-05 4.3E-10 70.8 9.4 124 66-194 102-253 (483)
423 cd01854 YjeQ_engC YjeQ/EngC. 98.1 5.4E-06 1.2E-10 74.0 6.0 64 66-141 162-226 (287)
424 PRK06995 flhF flagellar biosyn 98.1 9.1E-05 2E-09 70.2 14.0 168 66-253 257-448 (484)
425 TIGR02475 CobW cobalamin biosy 98.1 9.3E-05 2E-09 67.6 13.6 22 67-88 6-27 (341)
426 KOG1491 Predicted GTP-binding 98.1 8.8E-06 1.9E-10 71.9 6.4 88 60-163 15-126 (391)
427 PRK14721 flhF flagellar biosyn 98.1 2.5E-05 5.4E-10 72.8 9.7 129 65-196 191-341 (420)
428 cd01854 YjeQ_engC YjeQ/EngC. 98.0 3.2E-05 6.8E-10 69.1 9.8 84 148-252 75-160 (287)
429 cd01859 MJ1464 MJ1464. This f 98.0 1.2E-05 2.6E-10 65.0 6.5 57 64-138 100-156 (156)
430 cd03689 RF3_II RF3_II: this su 98.0 3.2E-05 6.9E-10 55.7 7.9 58 269-330 2-66 (85)
431 KOG0447 Dynamin-like GTP bindi 98.0 6.6E-05 1.4E-09 70.2 11.5 132 63-195 306-493 (980)
432 KOG2485 Conserved ATP/GTP bind 98.0 1.6E-05 3.5E-10 69.5 7.1 66 62-137 140-205 (335)
433 cd01983 Fer4_NifH The Fer4_Nif 98.0 8E-05 1.7E-09 54.5 10.1 74 68-169 2-76 (99)
434 COG0552 FtsY Signal recognitio 98.0 0.00011 2.3E-09 65.5 12.2 129 63-195 137-298 (340)
435 cd04090 eEF2_II_snRNP Loc2 eEF 98.0 7.8E-05 1.7E-09 54.8 9.2 64 267-330 2-75 (94)
436 PRK12288 GTPase RsgA; Reviewed 98.0 7.5E-05 1.6E-09 68.3 11.1 87 149-253 118-205 (347)
437 cd02037 MRP-like MRP (Multiple 98.0 3.6E-05 7.8E-10 63.1 8.1 123 70-194 5-134 (169)
438 KOG1424 Predicted GTP-binding 98.0 1.2E-05 2.5E-10 74.7 5.6 58 62-137 311-368 (562)
439 PRK13796 GTPase YqeH; Provisio 98.0 7.5E-05 1.6E-09 69.0 11.0 86 140-231 58-144 (365)
440 cd02042 ParA ParA and ParB of 97.9 0.00013 2.8E-09 54.6 10.1 81 68-173 2-83 (104)
441 PRK00098 GTPase RsgA; Reviewed 97.9 1.4E-05 3E-10 71.8 5.5 22 66-87 165-186 (298)
442 KOG3859 Septins (P-loop GTPase 97.9 0.00014 3.1E-09 62.6 10.8 136 65-215 42-209 (406)
443 PRK01889 GTPase RsgA; Reviewed 97.9 8.3E-05 1.8E-09 68.4 10.1 82 149-251 110-192 (356)
444 PHA02518 ParA-like protein; Pr 97.9 0.00038 8.3E-09 59.0 13.4 126 67-194 2-146 (211)
445 cd03700 eEF2_snRNP_like_II EF2 97.9 0.00012 2.6E-09 53.7 8.4 64 267-330 2-75 (93)
446 KOG2743 Cobalamin synthesis pr 97.8 0.00026 5.5E-09 61.8 11.3 80 127-208 145-237 (391)
447 KOG3887 Predicted small GTPase 97.8 7.8E-05 1.7E-09 62.9 7.7 149 66-230 28-187 (347)
448 cd02035 ArsA ArsA ATPase funct 97.8 0.00023 5E-09 60.9 10.5 67 128-194 114-183 (217)
449 PRK13695 putative NTPase; Prov 97.8 0.00021 4.5E-09 58.9 9.8 118 66-191 1-136 (174)
450 KOG0781 Signal recognition par 97.7 0.00015 3.4E-09 66.9 8.7 138 58-196 371-545 (587)
451 TIGR01007 eps_fam capsular exo 97.7 0.00027 5.8E-09 59.8 9.7 68 127-195 127-194 (204)
452 PF01656 CbiA: CobQ/CobB/MinD/ 97.7 0.00015 3.2E-09 60.7 8.0 126 69-196 3-163 (195)
453 KOG0099 G protein subunit Galp 97.7 0.00045 9.8E-09 59.1 9.9 75 120-195 194-283 (379)
454 TIGR03348 VI_IcmF type VI secr 97.7 0.00017 3.8E-09 76.2 9.1 115 67-195 113-257 (1169)
455 cd02117 NifH_like This family 97.6 0.00058 1.3E-08 58.2 10.7 67 127-194 116-188 (212)
456 KOG4181 Uncharacterized conser 97.6 0.0029 6.4E-08 56.4 14.8 26 63-88 186-211 (491)
457 cd02032 Bchl_like This family 97.6 0.00083 1.8E-08 59.4 11.0 66 127-193 115-184 (267)
458 cd00550 ArsA_ATPase Oxyanion-t 97.5 0.0028 6.1E-08 55.6 13.4 70 126-195 123-203 (254)
459 KOG2423 Nucleolar GTPase [Gene 97.5 5.2E-05 1.1E-09 68.3 2.3 36 52-87 294-329 (572)
460 CHL00175 minD septum-site dete 97.5 0.0024 5.2E-08 56.9 13.0 66 127-194 126-191 (281)
461 PRK13849 putative crown gall t 97.5 0.0023 5E-08 55.2 12.3 122 68-192 4-151 (231)
462 TIGR01969 minD_arch cell divis 97.5 0.0034 7.4E-08 54.7 13.7 66 127-194 108-173 (251)
463 KOG2484 GTPase [General functi 97.5 7.2E-05 1.6E-09 67.6 2.8 58 63-138 250-307 (435)
464 cd03703 aeIF5B_II aeIF5B_II: T 97.5 0.0011 2.4E-08 49.5 8.6 59 268-328 3-72 (110)
465 COG1618 Predicted nucleotide k 97.5 0.0041 9E-08 49.6 12.1 32 64-95 4-35 (179)
466 COG1162 Predicted GTPases [Gen 97.4 0.0013 2.8E-08 58.1 10.2 72 151-231 79-152 (301)
467 cd03702 IF2_mtIF2_II This fami 97.4 0.00081 1.8E-08 49.2 7.5 58 267-330 2-60 (95)
468 PRK10751 molybdopterin-guanine 97.4 0.0011 2.4E-08 54.2 8.9 29 65-93 6-34 (173)
469 cd04178 Nucleostemin_like Nucl 97.4 0.00035 7.5E-09 57.4 6.0 44 153-197 1-46 (172)
470 COG1341 Predicted GTPase or GT 97.4 0.0007 1.5E-08 61.8 8.2 35 63-97 71-105 (398)
471 CHL00072 chlL photochlorophyll 97.4 0.0016 3.5E-08 58.2 10.2 65 127-192 115-183 (290)
472 PF06858 NOG1: Nucleolar GTP-b 97.3 0.0013 2.8E-08 42.8 6.4 47 145-192 6-58 (58)
473 TIGR01281 DPOR_bchL light-inde 97.3 0.0019 4.1E-08 57.1 9.8 66 127-193 115-184 (268)
474 TIGR00487 IF-2 translation ini 97.3 0.0061 1.3E-07 59.8 13.7 164 133-330 392-556 (587)
475 TIGR01968 minD_bact septum sit 97.2 0.0043 9.4E-08 54.3 11.4 65 127-193 111-175 (261)
476 cd03116 MobB Molybdenum is an 97.2 0.0022 4.7E-08 52.0 8.5 28 67-94 3-30 (159)
477 cd02040 NifH NifH gene encodes 97.2 0.005 1.1E-07 54.4 11.7 29 67-95 3-31 (270)
478 PRK13185 chlL protochlorophyll 97.2 0.0035 7.7E-08 55.4 10.7 65 127-192 117-185 (270)
479 COG1763 MobB Molybdopterin-gua 97.2 0.0024 5.2E-08 51.6 8.6 32 66-97 3-34 (161)
480 cd03701 IF2_IF5B_II IF2_IF5B_I 97.2 0.0022 4.7E-08 47.1 7.5 58 267-330 2-60 (95)
481 PF03205 MobB: Molybdopterin g 97.2 0.0032 7E-08 49.8 8.8 30 67-96 2-31 (140)
482 TIGR03499 FlhF flagellar biosy 97.2 0.00042 9.1E-09 61.7 4.2 28 65-92 194-221 (282)
483 PRK05306 infB translation init 97.2 0.015 3.2E-07 58.8 15.4 163 134-330 595-758 (787)
484 PF07015 VirC1: VirC1 protein; 97.1 0.004 8.8E-08 53.0 9.4 122 70-194 7-153 (231)
485 COG0532 InfB Translation initi 97.1 0.016 3.4E-07 54.9 14.0 85 244-330 393-477 (509)
486 PRK01889 GTPase RsgA; Reviewed 97.1 0.00058 1.2E-08 62.9 4.5 23 66-88 196-218 (356)
487 smart00010 small_GTPase Small 97.1 0.0014 3.1E-08 50.1 5.8 20 67-86 2-21 (124)
488 PRK13232 nifH nitrogenase redu 97.1 0.0055 1.2E-07 54.3 10.2 29 67-95 3-31 (273)
489 CHL00189 infB translation init 97.0 0.019 4.2E-07 57.5 14.9 163 133-330 549-712 (742)
490 KOG2484 GTPase [General functi 97.0 0.0057 1.2E-07 55.6 9.9 77 133-214 127-205 (435)
491 KOG3022 Predicted ATPase, nucl 97.0 0.0077 1.7E-07 52.2 10.3 68 124-191 153-221 (300)
492 cd02033 BchX Chlorophyllide re 97.0 0.011 2.4E-07 53.7 11.7 33 63-95 29-61 (329)
493 PRK13230 nitrogenase reductase 96.9 0.0077 1.7E-07 53.6 10.1 30 66-95 2-31 (279)
494 TIGR01287 nifH nitrogenase iro 96.9 0.0033 7.1E-08 55.8 7.5 29 67-95 2-30 (275)
495 TIGR03371 cellulose_yhjQ cellu 96.9 0.029 6.3E-07 48.7 13.2 64 129-195 116-182 (246)
496 TIGR03029 EpsG chain length de 96.9 0.009 2E-07 53.0 10.0 63 127-190 212-274 (274)
497 COG0455 flhG Antiactivator of 96.8 0.015 3.3E-07 51.0 10.8 66 128-195 113-180 (262)
498 COG3523 IcmF Type VI protein s 96.8 0.0029 6.2E-08 65.8 7.1 113 68-195 128-270 (1188)
499 PRK14495 putative molybdopteri 96.8 0.0058 1.3E-07 56.9 8.4 32 67-98 3-34 (452)
500 cd02034 CooC The accessory pro 96.8 0.011 2.3E-07 45.2 8.5 31 67-97 1-31 (116)
No 1
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-54 Score=369.04 Aligned_cols=272 Identities=73% Similarity=1.123 Sum_probs=263.8
Q ss_pred hhhhcCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeC
Q 020176 56 MATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDC 135 (330)
Q Consensus 56 ~~~~~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDt 135 (330)
...+.+.+++.||+-+||+++|||||..++++...+.|...+..++..|+.++|+.+|+|+...+..|+...+.+--+|+
T Consensus 45 ~~~f~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DC 124 (449)
T KOG0460|consen 45 KAVFVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDC 124 (449)
T ss_pred ccccccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCC
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 136 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 136 PG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
|||.||+++|+.+..+.|++|+||.+++|..+|++||+.++++.|++++++++||.|++++++..+.++.++++++..+|
T Consensus 125 PGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~g 204 (449)
T KOG0460|consen 125 PGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFG 204 (449)
T ss_pred CchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVG 295 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g 295 (330)
++++++|++..||+.++.|++.+.+.+.+..|++++.+++|.|.|+.++||.|+|.++|.++|+|||++|++.+|+|++|
T Consensus 205 f~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG 284 (449)
T KOG0460|consen 205 FDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKG 284 (449)
T ss_pred CCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCceEEEEEEEeCceeecEEecC
Q 020176 296 EEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVS 329 (330)
Q Consensus 296 ~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g 329 (330)
|++.+.+.++ ..+..|..||+|++.+++|+||
T Consensus 285 ~e~eivG~~~--~lkttvtgiemF~K~ld~a~AG 316 (449)
T KOG0460|consen 285 DEVEIVGHNK--TLKTTVTGIEMFRKSLDEAQAG 316 (449)
T ss_pred CEEEEeccCc--ceeeEeehHHHHHHHHHhcccc
Confidence 9999998776 5899999999999999999998
No 2
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=6.2e-50 Score=373.91 Aligned_cols=325 Identities=86% Similarity=1.255 Sum_probs=270.4
Q ss_pred CcceeecCCCCccccCCccccccccCCCccccccccccccc-cccCCCCCchhhhhhhhhcCCcceeEEEEEcCCCCCHH
Q 020176 1 MASVVLRNPNSKRIVPFSSQIYSCCRGSLSISDAFSANETS-ATRCGPSVNPWWRSMATFTRTKLHVNVGTIGHVDHGKT 79 (330)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~G~~~~GKS 79 (330)
||.++.++-+....++......--. ..++.+..+.. ..........|..++.++...+++++|+++||+|+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ni~iiGhvd~GKS 75 (447)
T PLN03127 1 MASVVLRNPNSKRLLPFSSQIYCAC-----RGSAPSTSASISAADDRQSPSPWWRSMATFTRTKPHVNVGTIGHVDHGKT 75 (447)
T ss_pred CceeeecccCCceeeccccccchhh-----cccCCcchhhhccccccCCchhHHHHHhhhhcCCceEEEEEECcCCCCHH
Confidence 5677777777777777764433222 11111122111 11122222445566777888899999999999999999
Q ss_pred HHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEE
Q 020176 80 TLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVV 159 (330)
Q Consensus 80 TLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vv 159 (330)
||+++|++...+.|......++.+|..++|+++|+|++.....++.++.+++|+|||||.+|...+..++..+|++++|+
T Consensus 76 TL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVV 155 (447)
T PLN03127 76 TLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVV 155 (447)
T ss_pred HHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEE
Confidence 99999987666666655444456899999999999999999999888899999999999999999999999999999999
Q ss_pred eCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCcccc
Q 020176 160 SAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEI 239 (330)
Q Consensus 160 da~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~ 239 (330)
|+.++...++++++.++...++|++|+++||+|+.+.++..+.+.+++.++++.++++..++|++++||.++.+|.|...
T Consensus 156 da~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~ 235 (447)
T PLN03127 156 SAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEI 235 (447)
T ss_pred ECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCccc
Confidence 99999999999999999999999777899999999766666777778888888888876789999999999988888666
Q ss_pred chhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeC
Q 020176 240 GKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF 319 (330)
Q Consensus 240 ~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~ 319 (330)
.++++..|++++.+.+|.|.+..++||+|+|+++|.++|+|+|++|+|.+|.|++||.|++.|.+++.+..++|+|||.+
T Consensus 236 ~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~ 315 (447)
T PLN03127 236 GKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMF 315 (447)
T ss_pred ccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEE
Confidence 66778999999999998888888999999999999999999999999999999999999999875533578999999999
Q ss_pred ceeecEEecCC
Q 020176 320 KKILDRGEVSW 330 (330)
Q Consensus 320 ~~~~~~a~~g~ 330 (330)
++++++|.||+
T Consensus 316 ~~~v~~a~aGd 326 (447)
T PLN03127 316 KKILDQGQAGD 326 (447)
T ss_pred CcEeCEEcCCC
Confidence 99999999996
No 3
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-51 Score=346.44 Aligned_cols=269 Identities=76% Similarity=1.163 Sum_probs=255.7
Q ss_pred hhhcCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCC
Q 020176 57 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCP 136 (330)
Q Consensus 57 ~~~~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtP 136 (330)
.++.+.+++.||+.+||.++|||||..+|+..+.+.+...+..++..|..++|+.+|+|+...+..|+..++.+..+|+|
T Consensus 4 ~kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcP 83 (394)
T COG0050 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCP 83 (394)
T ss_pred hhhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCC
Confidence 45678899999999999999999999999999999888888888889999999999999999999999999999999999
Q ss_pred CchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
||.||.++|+.+.++.|++|+|++|.+|+.+|+++|+.+.++.|+|.+++++||+|+++++++.+.++.++++++..|++
T Consensus 84 GHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 84 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred ChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~ 296 (330)
++++.|++..||+.+++|... +...+.+|++++.+++|.|.++.++||+|+|.++|.+.|+|+|++|+|.+|+|++|+
T Consensus 164 ~gd~~Pii~gSal~ale~~~~--~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~ 241 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAK--WEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGE 241 (394)
T ss_pred CCCCcceeechhhhhhcCCcc--hHHHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCC
Confidence 999999999999999877654 446799999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCceEEEEEEEeCceeecEEecC
Q 020176 297 EVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVS 329 (330)
Q Consensus 297 ~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g 329 (330)
++.+.+... ..+..|.+|++|++.++++.||
T Consensus 242 eveivG~~~--~~kttvtgvemfrk~ld~~~AG 272 (394)
T COG0050 242 EVEIVGIKE--TQKTTVTGVEMFRKLLDEGQAG 272 (394)
T ss_pred EEEEecccc--cceeEEEhHHHHHHHHhccccC
Confidence 999987663 6789999999999999999998
No 4
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1e-47 Score=356.09 Aligned_cols=269 Identities=76% Similarity=1.170 Sum_probs=239.1
Q ss_pred hhcCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC
Q 020176 58 TFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (330)
Q Consensus 58 ~~~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (330)
++.+.+++++|+++||+++|||||+++|++...+.|+.....++.+|..++|+++|+|++.....++..+..++||||||
T Consensus 5 ~~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPG 84 (394)
T PRK12736 5 KFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPG 84 (394)
T ss_pred hhccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCC
Confidence 45667889999999999999999999999766566665554445689999999999999999888888888999999999
Q ss_pred chhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
|.+|...+..++..+|++++|+|+.+++..++.+++.++...++|++|+++||+|+.+.++..+.+.++++++++.+++.
T Consensus 85 h~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999988889999999876666677777899999999887
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCE
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE 297 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~ 297 (330)
...+|++++||+++.++.+.+ ..++.+|++.+.+.+|.|.++.++||+|+|+++|.++|.|+|++|+|.+|+|++||.
T Consensus 165 ~~~~~ii~vSa~~g~~~~~~~--~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~ 242 (394)
T PRK12736 165 GDDIPVIRGSALKALEGDPKW--EDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDE 242 (394)
T ss_pred cCCccEEEeeccccccCCCcc--hhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCE
Confidence 677899999999976554332 246899999999999988888899999999999999999999999999999999999
Q ss_pred EEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 298 VEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 298 v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
|++.|.+. +..++|+|||.+++++++|.||+
T Consensus 243 v~i~p~~~--~~~~~V~sI~~~~~~~~~a~aGd 273 (394)
T PRK12736 243 VEIVGIKE--TQKTVVTGVEMFRKLLDEGQAGD 273 (394)
T ss_pred EEEecCCC--CeEEEEEEEEECCEEccEECCCC
Confidence 99998743 45799999999999999999996
No 5
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-48 Score=342.75 Aligned_cols=264 Identities=41% Similarity=0.588 Sum_probs=240.3
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHH---------------HHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITK---------------VLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 125 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~---------------~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~ 125 (330)
..+++++++++||+++|||||+++|+- .....|+..+...|.+|++.+|+++|.|++..+..++.
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 457889999999999999999999951 22346777788889999999999999999999999999
Q ss_pred CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCC-------CchhhHHHHHHHHHcCCCeEEEEEeeccCcC-hH
Q 020176 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-------PMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DE 197 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~-------~~~~~~~~l~~~~~~~~p~iivviNK~D~~~-~~ 197 (330)
+...++|+|+|||.+|.++|..++.+||+++||||+..+ ...|+++|+.+++.+|+.++||++||||+++ ++
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 999999999999999999999999999999999999987 8899999999999999999999999999996 56
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCC--ccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEe
Q 020176 198 ELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGK--NEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFS 275 (330)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~--~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~ 275 (330)
+.++++..++..+++.+|+...+++++|+||.+|.|-. .....|+....|+++|. .+..|.++.++||+++|++++.
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~~~d~Plr~pI~~v~~ 241 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPERPLDKPLRLPIQDVYS 241 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCCCCCCCCeEeEeeeEEE
Confidence 77888999999999999998889999999998864432 23467788899999999 5677888999999999999999
Q ss_pred eCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecC
Q 020176 276 IQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVS 329 (330)
Q Consensus 276 ~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g 329 (330)
+.+.|+|..|||.+|.|++||+|++.|.+. ..+|+||++||+++++|.||
T Consensus 242 i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~----~~evksie~~~~~~~~a~~G 291 (428)
T COG5256 242 ISGIGTVPVGRVESGVIKPGQKVTFMPAGV----VGEVKSIEMHHEEISQAEPG 291 (428)
T ss_pred ecCCceEEEEEEeeeeeccCCEEEEecCcc----eEEEeeeeecccccccCCCC
Confidence 999999999999999999999999999875 69999999999999999998
No 6
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.1e-47 Score=353.14 Aligned_cols=271 Identities=76% Similarity=1.165 Sum_probs=239.1
Q ss_pred hhcCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC
Q 020176 58 TFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (330)
Q Consensus 58 ~~~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (330)
.+.+.+++++|+++||+|+|||||+++|+....+.|.......+.+|..++|+.+|+|++.....++.++.+++|+||||
T Consensus 5 ~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPG 84 (396)
T PRK12735 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPG 84 (396)
T ss_pred hcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCC
Confidence 56778899999999999999999999999866666665544445689999999999999998888888888999999999
Q ss_pred chhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
|.+|...+..++..+|++++|+|+.+++..++.+++..+...++|.+++++||+|+.+.++..+.+.++++++++.+++.
T Consensus 85 h~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999977678999999876666677777899999999886
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCE
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE 297 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~ 297 (330)
+.++|++++||+++.+.........++..|+++|.+.+|.|.++.++||+|+|+++|+++|.|+|++|+|.+|+|++||+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~ 244 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDE 244 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCE
Confidence 66799999999998665333233346899999999988888888899999999999999999999999999999999999
Q ss_pred EEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 298 VEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 298 v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
|++.|.+. +..++|++||++++++++|.||+
T Consensus 245 v~i~p~~~--~~~~~VksI~~~~~~v~~a~aGd 275 (396)
T PRK12735 245 VEIVGIKE--TQKTTVTGVEMFRKLLDEGQAGD 275 (396)
T ss_pred EEEecCCC--CeEEEEEEEEECCeEeCEECCCC
Confidence 99998653 56899999999999999999996
No 7
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=8.1e-47 Score=350.69 Aligned_cols=269 Identities=77% Similarity=1.157 Sum_probs=238.4
Q ss_pred hhcCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC
Q 020176 58 TFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (330)
Q Consensus 58 ~~~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (330)
.+...+++++|+++||+++|||||+++|++...+.|+.....++.+|..++|+++|+|++.....++..+..++||||||
T Consensus 5 ~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpG 84 (394)
T TIGR00485 5 KFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPG 84 (394)
T ss_pred hhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCc
Confidence 44567889999999999999999999999777666776665556789999999999999999888888888999999999
Q ss_pred chhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
|++|...+..++..+|++++|+|+.+++..++.+++..+...++|++|+++||+|+.++++..+.+.++++++++.+++.
T Consensus 85 h~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 85 HADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred hHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999977778999999976666676777899999999887
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCE
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE 297 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~ 297 (330)
+.++|++++||+++.++.+. +..++.+|++++.+.+|.|.++.++||+|+|+++|+++|+|+|++|+|.+|.|++||+
T Consensus 165 ~~~~~ii~vSa~~g~~g~~~--~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~ 242 (394)
T TIGR00485 165 GDDTPIIRGSALKALEGDAE--WEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEE 242 (394)
T ss_pred ccCccEEECccccccccCCc--hhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCE
Confidence 66799999999998665542 3346789999999888888888899999999999999999999999999999999999
Q ss_pred EEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 298 VEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 298 v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
|++.|.+. +..++|++||.+++++++|.||+
T Consensus 243 v~i~p~~~--~~~~~VksI~~~~~~~~~a~aGd 273 (394)
T TIGR00485 243 VEIVGLKD--TRKTTVTGVEMFRKELDEGRAGD 273 (394)
T ss_pred EEEecCCC--CcEEEEEEEEECCeEEEEECCCC
Confidence 99988542 45799999999999999999995
No 8
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=8.4e-47 Score=349.98 Aligned_cols=271 Identities=78% Similarity=1.173 Sum_probs=238.2
Q ss_pred hhcCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC
Q 020176 58 TFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (330)
Q Consensus 58 ~~~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (330)
.+...+++++|+++||+++|||||+++|+....+.|......++.+|..++|+.+|+|++.....++..+.+++|+||||
T Consensus 5 ~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG 84 (396)
T PRK00049 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPG 84 (396)
T ss_pred hccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCC
Confidence 45667889999999999999999999999876666655544445689999999999999999888888888999999999
Q ss_pred chhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
|.+|...+..++..+|++++|+|+.++...++.+++.++...++|.+|+++||+|+.+.++..+.+.++++++++.++++
T Consensus 85 ~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999966678999999876666677777899999998886
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCE
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE 297 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~ 297 (330)
+.++|++++||+.+.+......+.+++..|+++|.+.+|.|.+..++||+|+|+++|+++|+|+|+.|+|.+|+|++||+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~ 244 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEE 244 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCE
Confidence 67899999999997653322233346899999999988888888899999999999999999999999999999999999
Q ss_pred EEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 298 VEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 298 v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
|.+.|.+. +..++|+|||++++++++|.||+
T Consensus 245 v~i~p~~~--~~~~~VksI~~~~~~~~~a~~Gd 275 (396)
T PRK00049 245 VEIVGIRD--TQKTTVTGVEMFRKLLDEGQAGD 275 (396)
T ss_pred EEEeecCC--CceEEEEEEEECCcEeCEEcCCC
Confidence 99998743 56899999999999999999996
No 9
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=3e-46 Score=350.65 Aligned_cols=271 Identities=70% Similarity=1.050 Sum_probs=233.4
Q ss_pred hhcCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC
Q 020176 58 TFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (330)
Q Consensus 58 ~~~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (330)
.+..++++++|+++||+++|||||+++|+......+......+..+|..+.|+.+|+|++.....++.++..++||||||
T Consensus 74 ~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPG 153 (478)
T PLN03126 74 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG 153 (478)
T ss_pred hhhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCC
Confidence 34457889999999999999999999998654333222222223578889999999999998888888889999999999
Q ss_pred chhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
|.+|..++..++..+|++++|||+.+|...++++++..+..+++|++|+++||+|+.+.++..+.+.++++++++.++++
T Consensus 154 h~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 154 HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999988889999999987777788888999999999987
Q ss_pred CCCccEEEeeccccccCC--------ccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEe
Q 020176 218 GDEIPIIRGSATSALQGK--------NEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQ 289 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~--------~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~ 289 (330)
..++|++++||.++.+.. +...+.+++..|++.+.++.|.|.++.++||+|+|+++|+++|+|+|+.|+|.+
T Consensus 234 ~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~s 313 (478)
T PLN03126 234 GDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVER 313 (478)
T ss_pred cCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEEc
Confidence 778999999999875321 111111247889999998777777888999999999999999999999999999
Q ss_pred eeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 290 GTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 290 G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
|.|++||.|+++|.+. +..++|++||.+++++++|.||+
T Consensus 314 G~i~~Gd~v~i~p~~~--~~~~~VksI~~~~~~v~~A~aG~ 352 (478)
T PLN03126 314 GTVKVGETVDIVGLRE--TRSTTVTGVEMFQKILDEALAGD 352 (478)
T ss_pred CeEecCCEEEEecCCC--ceEEEEEEEEECCeECCEEeCCc
Confidence 9999999999998654 56799999999999999999996
No 10
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=2e-45 Score=342.43 Aligned_cols=271 Identities=73% Similarity=1.087 Sum_probs=232.0
Q ss_pred hhcCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC
Q 020176 58 TFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (330)
Q Consensus 58 ~~~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (330)
.+..++++++|+++||+|+|||||+++|++............+..+|..+.|+.+|+|++.....++.++.+++|+||||
T Consensus 5 ~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPG 84 (409)
T CHL00071 5 KFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPG 84 (409)
T ss_pred hccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCC
Confidence 34557888999999999999999999999653322212222223578899999999999998888888888999999999
Q ss_pred chhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
|.+|...+..++..+|++++|+|+.+++..++.+++.++...++|++|+++||+|+.+.++..+.+.+++.++++.++++
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred hHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999988889999999987777777888999999999887
Q ss_pred CCCccEEEeeccccccCCccc-------cch-hhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEe
Q 020176 218 GDEIPIIRGSATSALQGKNEE-------IGK-KAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQ 289 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~-------~~~-~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~ 289 (330)
...+|++++||..+.+--... ..| +++..|++++.+.+|.|.++.+.||+|+|+++|.++|+|+|++|+|.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~s 244 (409)
T CHL00071 165 GDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIER 244 (409)
T ss_pred CCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEec
Confidence 667999999999875421101 112 357899999999888888888999999999999999999999999999
Q ss_pred eeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 290 GTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 290 G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
|.|++||.|.+.|.+. ...++|++||.+++++++|.||+
T Consensus 245 G~l~~Gd~v~i~p~~~--~~~~~VksI~~~~~~v~~a~aGd 283 (409)
T CHL00071 245 GTVKVGDTVEIVGLRE--TKTTTVTGLEMFQKTLDEGLAGD 283 (409)
T ss_pred CEEeeCCEEEEeeCCC--CcEEEEEEEEEcCcCCCEECCCc
Confidence 9999999999887543 35799999999999999999995
No 11
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=4.4e-45 Score=341.64 Aligned_cols=265 Identities=35% Similarity=0.500 Sum_probs=226.7
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHH---------------hcCccceeeccccCCChhhhhcCceEEeEEEEeee
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLA---------------EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 125 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~ 125 (330)
.++++++|+++||.++|||||+++|+.... +.+...+...+.+|..++|+++|+|++.....+++
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 457889999999999999999999974321 12223333346789999999999999999999999
Q ss_pred CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCc-------hhhHHHHHHHHHcCCCeEEEEEeeccCcCh--
Q 020176 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-------PQTKEHILLARQVGVPSLVCFLNKVDLVED-- 196 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~-------~~~~~~l~~~~~~~~p~iivviNK~D~~~~-- 196 (330)
.++.++|+|||||++|..++..+++.+|++|+|+|+.+|.. .++++++.++..+++|++|+++||||+.+.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhh
Confidence 99999999999999999999999999999999999998732 799999999999999988999999998732
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCc--cccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEE
Q 020176 197 -EELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKN--EEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDV 273 (330)
Q Consensus 197 -~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~--~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~ 273 (330)
++.++++.++++.+++..|+...++|++|+||+++.+-.+ ....|+..+.|+++|.+ ++.|.+..+.||+|+|+++
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~~~~~~plr~~I~~v 241 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPSDKPLRLPLQDV 241 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCccccCCCcEEEEEEE
Confidence 4456677789999999999877789999999988543321 12355556789999887 5667788899999999999
Q ss_pred EeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 274 FSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 274 ~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
|+++|+|+|+.|+|.+|.|++||.|.++|.+. .++|+||+++++++++|.||+
T Consensus 242 ~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~----~~~VksI~~~~~~v~~a~aGd 294 (447)
T PLN00043 242 YKIGGIGTVPVGRVETGVIKPGMVVTFGPTGL----TTEVKSVEMHHESLQEALPGD 294 (447)
T ss_pred EEeCCcEEEEEEEEECCEEeeCCEEEEcCCCC----EEEEEEEEECCeEeCEecCCC
Confidence 99999999999999999999999999998765 699999999999999999996
No 12
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=6.8e-45 Score=340.64 Aligned_cols=265 Identities=35% Similarity=0.488 Sum_probs=227.9
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHH---------------hcCccceeeccccCCChhhhhcCceEEeEEEEeee
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLA---------------EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 125 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~ 125 (330)
.++++++|+++||+++|||||+++|+.... ..|...+...+.+|..++|+++|+|++.....+++
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 357789999999999999999999975221 22344444446789999999999999999999999
Q ss_pred CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCC-------chhhHHHHHHHHHcCCCeEEEEEeeccCc--C-
Q 020176 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-------MPQTKEHILLARQVGVPSLVCFLNKVDLV--E- 195 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~-------~~~~~~~l~~~~~~~~p~iivviNK~D~~--~- 195 (330)
.+..++|+|||||.+|..++..++..+|++++|||+.+|. ..|+++|+.++..+++|++|+++||||.. +
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 9999999999999999999999999999999999999987 47999999999999999898999999943 2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCc--cccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEE
Q 020176 196 DEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKN--EEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDV 273 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~--~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~ 273 (330)
.++.++.+.+++.++++..++...++|++|+||.++.+-.+ ....|+....|+++|.+. +.|.++.++|++|+|+++
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~-~~~~~~~~~p~r~~I~~v 241 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL-EPPKRPVDKPLRLPLQDV 241 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC-CCCCcCCCCCeEEEEEEE
Confidence 34667888889999999999876789999999998643321 123455567899998764 557777899999999999
Q ss_pred EeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 274 FSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 274 ~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
|.++|.|+|++|+|.+|.|++||+|.+.|.+. .++|++||.+++++++|.||+
T Consensus 242 ~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~----~~~VksI~~~~~~~~~a~aG~ 294 (446)
T PTZ00141 242 YKIGGIGTVPVGRVETGILKPGMVVTFAPSGV----TTEVKSVEMHHEQLAEAVPGD 294 (446)
T ss_pred EecCCceEEEEEEEEcceEecCCEEEEccCCc----EEEEEEEEecCcccCEECCCC
Confidence 99999999999999999999999999998764 699999999999999999996
No 13
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=1.5e-43 Score=332.54 Aligned_cols=264 Identities=42% Similarity=0.638 Sum_probs=225.8
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHH---------------hcCccceeeccccCCChhhhhcCceEEeEEEEeeeC
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLA---------------EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 126 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~ 126 (330)
++++++|+++||+|+|||||+++|+.... ..|+..+...+.+|..++|+++|+|++.....++..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 57789999999999999999999984321 124444444567899999999999999999999989
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCC--CCchhhHHHHHHHHHcCCCeEEEEEeeccCcC-hHHHHHHH
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD--GPMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELLELV 203 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~--~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~-~~~~~~~~ 203 (330)
+..++|||||||++|...+..++..+|++++|+|+++ +...++.+++.++...+++++++++||+|+.. .++.++.+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHH
Confidence 9999999999999999999999999999999999998 88899999999998899877999999999985 23445566
Q ss_pred HHHHHHHHHhcCCCCCCccEEEeeccccccCCcc--ccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCce
Q 020176 204 EMELRELLSFYKFPGDEIPIIRGSATSALQGKNE--EIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGT 281 (330)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~--~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~ 281 (330)
.+++.++++.+++....+|++++||+++.+-... ...|+....|+++|.. ++.|.+..++||+|+|+++|.++|.|+
T Consensus 163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~-~~~~~~~~~~p~r~~i~~~~~~~g~G~ 241 (425)
T PRK12317 163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDN-LKPPEKPTDKPLRIPIQDVYSISGVGT 241 (425)
T ss_pred HHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhc-CCCCccccCCCcEEEEEEEEeeCCCeE
Confidence 7788888888887656789999999986433221 2456666889999876 676777889999999999999999999
Q ss_pred EEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 282 VATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 282 v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
|++|+|.+|+|++||+|.++|.+. .++|++|+.+++++++|.||+
T Consensus 242 vv~G~v~~G~v~~Gd~v~i~P~~~----~~~VksI~~~~~~~~~a~aG~ 286 (425)
T PRK12317 242 VPVGRVETGVLKVGDKVVFMPAGV----VGEVKSIEMHHEELPQAEPGD 286 (425)
T ss_pred EEEEEEeeccEecCCEEEECCCCC----eEEEEEEEECCcccCEECCCC
Confidence 999999999999999999999765 699999999999999999996
No 14
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=1.3e-42 Score=326.20 Aligned_cols=265 Identities=40% Similarity=0.591 Sum_probs=224.4
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHH---------------HhcCccceeeccccCCChhhhhcCceEEeEEEEeee
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 125 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~ 125 (330)
.+++.++|+++||+++|||||+++|+... ...|...+...+.+|..++|+++|+|++.....+..
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 46778999999999999999999998521 123333344456689999999999999999999998
Q ss_pred CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCC---CchhhHHHHHHHHHcCCCeEEEEEeeccCcC-hHHHHH
Q 020176 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG---PMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELLE 201 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~---~~~~~~~~l~~~~~~~~p~iivviNK~D~~~-~~~~~~ 201 (330)
.+..++|||||||++|...+..++..+|++++|+|++++ ...++.+++.++...+++++|+|+||+|+.+ .++..+
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHH
Confidence 899999999999999999999999999999999999998 6778888888888888877999999999985 344456
Q ss_pred HHHHHHHHHHHhcCCCCCCccEEEeeccccccCCcc--ccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCC
Q 020176 202 LVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNE--EIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGR 279 (330)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~--~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 279 (330)
.+.+++.++++.+++....++++++||+++.+-.+. ...|+....|+++|.. +++|.+..++||+|+|+++|+++|+
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~-~~~~~~~~~~p~r~~i~~v~~~~g~ 241 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA-LEPPEKPTDKPLRIPIQDVYSITGV 241 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc-CCCCCCccCCCcEEEEEEEEecCCC
Confidence 677788999998887666789999999986443221 1345556789999976 5667777889999999999999999
Q ss_pred ceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 280 GTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 280 G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
|+|++|+|.+|.|++||.|.+.|.+. .++|+|||.+++++++|.||+
T Consensus 242 G~vv~G~v~~G~i~~gd~v~i~P~~~----~~~VksI~~~~~~~~~a~aG~ 288 (426)
T TIGR00483 242 GTVPVGRVETGVLKPGDKVVFEPAGV----SGEVKSIEMHHEQIEQAEPGD 288 (426)
T ss_pred eEEEEEEEccceeecCCEEEECCCCc----EEEEEEEEECCcccCEEcCCC
Confidence 99999999999999999999999765 699999999999999999996
No 15
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=315.83 Aligned_cols=244 Identities=32% Similarity=0.476 Sum_probs=205.6
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee---------------e
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE---------------T 125 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~---------------~ 125 (330)
...++++|+++||.++|||||+.+|++. ..++..+|.++|+|++..+..+. .
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~-------------~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~ 96 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGV-------------KTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSY 96 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCC-------------CcccchhhHHhCCchhccccccccccCcccCCccccccc
Confidence 3467789999999999999999999932 24667889999999887654331 0
Q ss_pred C------------------CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCC-CchhhHHHHHHHHHcCCCeEEE
Q 020176 126 A------------------KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-PMPQTKEHILLARQVGVPSLVC 186 (330)
Q Consensus 126 ~------------------~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~-~~~~~~~~l~~~~~~~~p~iiv 186 (330)
. ...++|+|||||++|.+++..++..+|++++|||+.++ +..|+++++..+..++++++|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIV 176 (460)
T PTZ00327 97 GSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIII 176 (460)
T ss_pred CCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEE
Confidence 0 23789999999999999999999999999999999986 7899999999999999988999
Q ss_pred EEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCe
Q 020176 187 FLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPF 266 (330)
Q Consensus 187 viNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~ 266 (330)
|+||+|+.+.++. +...++++++++.+. ....|+|++||+++ .+++.|+++|...+|.|.++.+.||
T Consensus 177 vlNKiDlv~~~~~-~~~~~ei~~~l~~~~--~~~~~iipVSA~~G----------~nI~~Ll~~L~~~lp~~~r~~~~p~ 243 (460)
T PTZ00327 177 LQNKIDLVKEAQA-QDQYEEIRNFVKGTI--ADNAPIIPISAQLK----------YNIDVVLEYICTQIPIPKRDLTSPP 243 (460)
T ss_pred EEecccccCHHHH-HHHHHHHHHHHHhhc--cCCCeEEEeeCCCC----------CCHHHHHHHHHhhCCCCCCCCCCCc
Confidence 9999999874443 344456777776543 25689999999997 4589999999988898888889999
Q ss_pred EEEEEEEEeeCC--------CceEEEEEEEeeeeecCCEEEEecCC-----CCCC----ceEEEEEEEeCceeecEEecC
Q 020176 267 LMPIEDVFSIQG--------RGTVATGRVEQGTIKVGEEVEVLGLT-----QGPS----LKTTVTGVEMFKKILDRGEVS 329 (330)
Q Consensus 267 ~~~i~~~~~~~~--------~G~v~~g~v~~G~l~~g~~v~~~~~~-----~~~~----~~~~v~si~~~~~~~~~a~~g 329 (330)
+|+|+++|.+++ +|+|++|+|.+|+|++||+|.+.|.+ .+.| ..++|+|||.+++++++|.||
T Consensus 244 r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG 323 (460)
T PTZ00327 244 RMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPG 323 (460)
T ss_pred EEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCC
Confidence 999999998864 79999999999999999999999964 1222 468999999999999999999
Q ss_pred C
Q 020176 330 W 330 (330)
Q Consensus 330 ~ 330 (330)
+
T Consensus 324 ~ 324 (460)
T PTZ00327 324 G 324 (460)
T ss_pred C
Confidence 6
No 16
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=1.7e-40 Score=308.92 Aligned_cols=258 Identities=27% Similarity=0.373 Sum_probs=214.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH---------------hcCcc--ceeeccccCCChhhhhcCceEEeEEEEeeeCCe
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLA---------------EEGKA--KAIAFDEIDKAPEEKKRGITIATAHVEYETAKR 128 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~---------------~~g~~--~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~ 128 (330)
++|+++||+++|||||+++|+.... ..|.. .+...+.+|..++|+++|+|++.....++..+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 4799999999999999999974311 12332 344566789999999999999999999988899
Q ss_pred eEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC-hHHHHHHHHHHH
Q 020176 129 HYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELLELVEMEL 207 (330)
Q Consensus 129 ~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~-~~~~~~~~~~~~ 207 (330)
+++|+|||||++|...+..++..+|++++|+|+.+|+..++.+++.++..++++++++++||+|+.. +++..+.+.+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~ 160 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDY 160 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988989999999985 344556667778
Q ss_pred HHHHHhcCCCCCCccEEEeeccccccCCcc--ccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEE
Q 020176 208 RELLSFYKFPGDEIPIIRGSATSALQGKNE--EIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATG 285 (330)
Q Consensus 208 ~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~--~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g 285 (330)
..+++.+++ .++|++|+||+++.+-... ...|+....|++.|.. ++.|.+..+.|++|+|+++|.....+..+.|
T Consensus 161 ~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~-~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G 237 (406)
T TIGR02034 161 LAFAEQLGF--RDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVERDAQDLPLRFPVQYVNRPNLDFRGYAG 237 (406)
T ss_pred HHHHHHcCC--CCccEEEeecccCCCCcccccCCCccchhHHHHHHHh-cCCCCCcCCCCcccceEEEeecCCCcEEEEE
Confidence 888887776 3679999999986433221 1345556778888876 4556677889999999999875443333789
Q ss_pred EEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 286 RVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 286 ~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
+|.+|+|++||+|.+.|.+. .++|++||.+++++++|.||+
T Consensus 238 ~v~~G~l~~gd~v~i~P~~~----~~~VksI~~~~~~~~~a~~G~ 278 (406)
T TIGR02034 238 TIASGSVHVGDEVVVLPSGR----SSRVARIVTFDGDLEQARAGQ 278 (406)
T ss_pred EEecceeecCCEEEEeCCCc----EEEEEEEEECCcccCEeCCCC
Confidence 99999999999999999754 799999999999999999996
No 17
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=7.4e-42 Score=298.02 Aligned_cols=306 Identities=25% Similarity=0.373 Sum_probs=250.9
Q ss_pred ecCCCCccccCCccccccccCCCccccccccccccccccCCCCCch-hhhhhh---hhcCCcceeEEEEEcCCCCCHHHH
Q 020176 6 LRNPNSKRIVPFSSQIYSCCRGSLSISDAFSANETSATRCGPSVNP-WWRSMA---TFTRTKLHVNVGTIGHVDHGKTTL 81 (330)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~I~v~G~~~~GKSTL 81 (330)
|+|||.+.||+...+.+++. +|..++...+|........+... +.++.. .....+.++.|+++||.++|||||
T Consensus 57 Vsd~Ge~~Gl~~~~l~esie---vL~~la~evgA~i~~v~~~eg~~g~Vaev~vrr~~~~~~~hv~Vg~aGhVdhGKSTl 133 (527)
T COG5258 57 VSDDGEPLGLSDEKLVESIE---VLRELAREVGASIYIVRVHEGTDGYVAEVLVRRKTEEAPEHVLVGVAGHVDHGKSTL 133 (527)
T ss_pred ecCCCcccCCCHHHHHHHHH---HHHHHHHHhCCEEEEEEEEeccCcEEEEEEEEecccCCCceEEEEEeccccCCcceE
Confidence 79999999999999999999 99999998888764443322222 222221 223346788999999999999999
Q ss_pred HHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEe-----------------------eeCCeeEEEEeCCCc
Q 020176 82 TAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY-----------------------ETAKRHYAHVDCPGH 138 (330)
Q Consensus 82 i~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~-----------------------~~~~~~i~iiDtPG~ 138 (330)
+++|+....++|.+..+. ..+...+|..+|.+.+.+..-+ +..++-+.|+||-||
T Consensus 134 vG~LvtG~~DDG~G~tR~--~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGH 211 (527)
T COG5258 134 VGVLVTGRLDDGDGATRS--YLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGH 211 (527)
T ss_pred EEEEEecCCCCCCcchhh--hhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhhhhcccEEEEEecCCc
Confidence 999998888888887765 3677778888888877655433 123456889999999
Q ss_pred hhhHHHHHHhhh--ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 139 ADYVKNMITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 139 ~~~~~~~~~~~~--~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
+.|++++++++- +.|+.++++.|++|++..++||+..+..+++| +|+++||+|+.++ +.++.+.+++..+++..+.
T Consensus 212 EpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lP-viVvvTK~D~~~d-dr~~~v~~ei~~~Lk~v~R 289 (527)
T COG5258 212 EPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELP-VIVVVTKIDMVPD-DRFQGVVEEISALLKRVGR 289 (527)
T ss_pred cHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCC-EEEEEEecccCcH-HHHHHHHHHHHHHHHHhcc
Confidence 999999999985 68999999999999999999999999999999 8899999999984 5556667788888776642
Q ss_pred --------------------CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC-CCCCCeEEEEEEEEe
Q 020176 217 --------------------PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER-QLDKPFLMPIEDVFS 275 (330)
Q Consensus 217 --------------------~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~-~~~~~~~~~i~~~~~ 275 (330)
....+|+|.+|+.++ +++ ++|+.+...+|...+ +..+||.|+|+++|+
T Consensus 290 ip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg----------~Gl-dlL~e~f~~Lp~rr~~~d~g~flmYId~iYs 358 (527)
T COG5258 290 IPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTG----------EGL-DLLDEFFLLLPKRRRWDDEGPFLMYIDKIYS 358 (527)
T ss_pred cceeeeccchhHHhhhhhhcCCceEEEEEEecccC----------ccH-HHHHHHHHhCCcccccCCCCCeEEEEEeeEE
Confidence 112589999999997 344 455555556775533 567899999999999
Q ss_pred eCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecC
Q 020176 276 IQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVS 329 (330)
Q Consensus 276 ~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g 329 (330)
+.|+|+|+.|.|.+|.++.||+++++|...+.|..++|+|||+||..++.|.||
T Consensus 359 VtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG 412 (527)
T COG5258 359 VTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAG 412 (527)
T ss_pred EeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEeeEEeccccCC
Confidence 999999999999999999999999999999999999999999999999999998
No 18
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=1.9e-40 Score=320.68 Aligned_cols=233 Identities=33% Similarity=0.555 Sum_probs=202.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee-CCeeEEEEeCCCchhhHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-AKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~i~iiDtPG~~~~~~~~ 145 (330)
.|+++|++++|||||+++|++. ..|..++|..+|+|++..+..+.. ++..+.|||||||++|...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~-------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV-------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-------------CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHH
Confidence 5899999999999999999832 246667788899999987766654 35678999999999999999
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEE
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIR 225 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~ 225 (330)
..++..+|++++|||+.+++.+++.+++..+...++|++++|+||+|+.++ +..+.+.+++.++++..++ ...|+|+
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~-~~~~~v~~ei~~~l~~~~~--~~~~ii~ 145 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE-ARIAEVRRQVKAVLREYGF--AEAKLFV 145 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCH-HHHHHHHHHHHHHHHhcCC--CCCcEEE
Confidence 999999999999999999999999999999999999977899999999874 3445566678888877665 3578999
Q ss_pred eeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCC
Q 020176 226 GSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQ 305 (330)
Q Consensus 226 ~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~ 305 (330)
+||+++ +++++|++.|... +.+.+..++||+|+|+++|.++|.|+|++|+|.+|+|++||+|.+.|.+.
T Consensus 146 VSA~tG----------~gI~~L~~~L~~~-~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~ 214 (614)
T PRK10512 146 TAATEG----------RGIDALREHLLQL-PEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNK 214 (614)
T ss_pred EeCCCC----------CCCHHHHHHHHHh-hccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCCC
Confidence 999997 4588888888875 44555678999999999999999999999999999999999999988654
Q ss_pred CCCceEEEEEEEeCceeecEEecCC
Q 020176 306 GPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 306 ~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
.++|++||.|++++++|.||+
T Consensus 215 ----~~~VrsIq~~~~~v~~a~aG~ 235 (614)
T PRK10512 215 ----PMRVRGLHAQNQPTEQAQAGQ 235 (614)
T ss_pred ----cEEEEEEecCCcCCCEEeCCC
Confidence 699999999999999999996
No 19
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.1e-39 Score=307.71 Aligned_cols=266 Identities=26% Similarity=0.333 Sum_probs=215.8
Q ss_pred hcCCcceeEEEEEcCCCCCHHHHHHHHHHHHH---------------hcCcc--ceeeccccCCChhhhhcCceEEeEEE
Q 020176 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLA---------------EEGKA--KAIAFDEIDKAPEEKKRGITIATAHV 121 (330)
Q Consensus 59 ~~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~---------------~~g~~--~~~~~~~~~~~~~e~~~g~t~~~~~~ 121 (330)
..+.++.++|+++||+|+|||||+++|+.... ..|.. .+...+.+|..++|+++|+|++....
T Consensus 21 ~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~ 100 (474)
T PRK05124 21 AQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYR 100 (474)
T ss_pred hccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEE
Confidence 34567789999999999999999999974321 12332 23344578999999999999999988
Q ss_pred EeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC-hHHHH
Q 020176 122 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELL 200 (330)
Q Consensus 122 ~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~-~~~~~ 200 (330)
.++.++.+++|||||||.+|...+..++..+|++++|||+.+|+..++.+++.++..++++++|+++||+|+.+ .++..
T Consensus 101 ~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 101 YFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred EeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHH
Confidence 88888899999999999999999999999999999999999999999999999999999877889999999985 34445
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCcc--ccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCC
Q 020176 201 ELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNE--EIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQG 278 (330)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~--~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 278 (330)
+.+.+++..+++.+++. ...+++|+||+++.+-... ...|+....|++.|.. ++.|.+..+.|++|+|++++....
T Consensus 181 ~~i~~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~-i~~~~~~~~~p~r~~I~~v~~~~~ 258 (474)
T PRK05124 181 ERIREDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLET-VDIQRVVDAQPFRFPVQYVNRPNL 258 (474)
T ss_pred HHHHHHHHHHHHhcCCC-CCceEEEEEeecCCCcccccccccccchhhHHHHHhh-cCCCCCCCCCCceeeEEEEEecCC
Confidence 66666777777776632 3589999999986443322 1244556678887664 566677788999999999976544
Q ss_pred CceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 279 RGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 279 ~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
....+.|+|.+|.|++||+|+++|.+. .++|++||.++.++++|.||+
T Consensus 259 ~~~g~~G~V~sG~l~~Gd~v~i~P~~~----~~~VksI~~~~~~v~~A~aG~ 306 (474)
T PRK05124 259 DFRGYAGTLASGVVKVGDRVKVLPSGK----ESNVARIVTFDGDLEEAFAGE 306 (474)
T ss_pred cccceEEEEEeEEEecCCEEEEecCCc----eEEEEEEEEcCccccCcCCCC
Confidence 222368999999999999999999765 699999999999999999996
No 20
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1.4e-39 Score=313.17 Aligned_cols=261 Identities=28% Similarity=0.383 Sum_probs=217.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
+||+|+||+++|||||+++|+..............+.+|..+.|+++|+|+......+.+.+..++|||||||.+|..++
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 69999999999999999999853211111111222468999999999999999888888899999999999999999999
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC--CCccE
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG--DEIPI 223 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pv 223 (330)
..+++.+|++++|+|+.+++..++..++..+...++| +|+|+||+|+.... .+.+.+++.+++..++... ..+|+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip-~IVviNKiD~~~a~--~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPSAR--PDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCC-EEEEEECCCCCCcC--HHHHHHHHHHHHHhhccccccccCcE
Confidence 9999999999999999999999999999999999999 67899999986521 2334456677776665432 25899
Q ss_pred EEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecC
Q 020176 224 IRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGL 303 (330)
Q Consensus 224 ~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~ 303 (330)
+++||+++....+......++..|++.+.+++|+|..+.++||+++|++++.++++|++++|||.+|+|++||.|++.|.
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~ 238 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKR 238 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecC
Confidence 99999998655444444457899999999999998888899999999999999999999999999999999999999886
Q ss_pred CCCCCceEEEEEEEeC----ceeecEEecCC
Q 020176 304 TQGPSLKTTVTGVEMF----KKILDRGEVSW 330 (330)
Q Consensus 304 ~~~~~~~~~v~si~~~----~~~~~~a~~g~ 330 (330)
+. .+...+|++|+.+ +.++++|.||+
T Consensus 239 ~~-~~~~~kV~~i~~~~g~~~~~v~~a~aGD 268 (594)
T TIGR01394 239 DG-TIENGRISKLLGFEGLERVEIDEAGAGD 268 (594)
T ss_pred CC-ceeEEEEEEEEEccCCCceECCEECCCC
Confidence 43 2456899999976 67999999995
No 21
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=1.4e-39 Score=302.97 Aligned_cols=242 Identities=39% Similarity=0.586 Sum_probs=200.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee--------------e---
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE--------------T--- 125 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~--------------~--- 125 (330)
+++++|+++|++++|||||+++|++. ..+...+|.++|+|+......+. .
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~-------------~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPV 68 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCe-------------ecccCHhHHHcCceeEecccccccccccccCcccccccccc
Confidence 56789999999999999999999731 25677888899999887643321 1
Q ss_pred ---------CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCC-chhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 126 ---------AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 126 ---------~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~-~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
....++|||||||++|...+..++..+|++++|+|++++. ..++.+++..+..++++++++|+||+|+.+
T Consensus 69 ~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 69 CPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS 148 (406)
T ss_pred ccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence 1367999999999999999999999999999999999987 889999999998898887899999999987
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEe
Q 020176 196 DEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFS 275 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~ 275 (330)
.+...+ ..+++.++++.+. ...+|++++||+++ +++++|+++|...+|.|.++.+.|++|+|+++|.
T Consensus 149 ~~~~~~-~~~~i~~~l~~~~--~~~~~ii~vSA~~g----------~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~ 215 (406)
T TIGR03680 149 KEKALE-NYEEIKEFVKGTV--AENAPIIPVSALHN----------ANIDALLEAIEKFIPTPERDLDKPPLMYVARSFD 215 (406)
T ss_pred HHHHHH-HHHHHHhhhhhcc--cCCCeEEEEECCCC----------CChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEe
Confidence 543322 2335555555442 24589999999997 4589999999998888888889999999999998
Q ss_pred eCC--------CceEEEEEEEeeeeecCCEEEEecCCC----C--C--CceEEEEEEEeCceeecEEecCC
Q 020176 276 IQG--------RGTVATGRVEQGTIKVGEEVEVLGLTQ----G--P--SLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 276 ~~~--------~G~v~~g~v~~G~l~~g~~v~~~~~~~----~--~--~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
+++ +|+|+.|+|.+|+|++||+|.+.|.+. + . +..++|+|||++++++++|.||+
T Consensus 216 v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~ 286 (406)
T TIGR03680 216 VNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGG 286 (406)
T ss_pred ecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEECCEECCEEcCCC
Confidence 876 577999999999999999999998742 1 1 23589999999999999999996
No 22
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=1e-39 Score=314.69 Aligned_cols=236 Identities=31% Similarity=0.563 Sum_probs=198.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|++|+|||||+++|++. ..+..++|..+|+|++..+..++..+..+.|||||||++|...+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~-------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~ 67 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGI-------------AADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNA 67 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc-------------cCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHH
Confidence 37999999999999999999832 13556677888999998887788878899999999999999999
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEE
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIR 225 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~ 225 (330)
..++..+|++++|+|+++++..++.+++..+...++|++++|+||+|+.+.+ ..+.+.+++.++++.+++. .++|+++
T Consensus 68 ~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~-~~~~~~~ei~~~l~~~~~~-~~~~ii~ 145 (581)
T TIGR00475 68 IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEE-EIKRTEMFMKQILNSYIFL-KNAKIFK 145 (581)
T ss_pred HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHH-HHHHHHHHHHHHHHHhCCC-CCCcEEE
Confidence 9999999999999999999999999999999999999899999999998743 3455666788888877652 2589999
Q ss_pred eeccccccCCccccchhhHHHHHHHHhhhCCC-CCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCC
Q 020176 226 GSATSALQGKNEEIGKKAILKLMDAVDEYIPD-PERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLT 304 (330)
Q Consensus 226 ~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~ 304 (330)
+||+++ .| +.++++.+...+.. +....+.||+|+|+++|.++|.|+|++|+|.+|+|++||+|.+.|.+
T Consensus 146 vSA~tG---~G-------I~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~ 215 (581)
T TIGR00475 146 TSAKTG---QG-------IGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPIN 215 (581)
T ss_pred EeCCCC---CC-------chhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCC
Confidence 999986 33 44444444333221 11125789999999999999999999999999999999999999976
Q ss_pred CCCCceEEEEEEEeCceeecEEecCC
Q 020176 305 QGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 305 ~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
. .++|++||.|++++++|.||+
T Consensus 216 ~----~~~Vr~iq~~~~~v~~a~aG~ 237 (581)
T TIGR00475 216 H----EVRVKAIQAQNQDVEIAYAGQ 237 (581)
T ss_pred c----eEEEeEEEECCccCCEEECCC
Confidence 5 699999999999999999996
No 23
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-40 Score=292.33 Aligned_cols=231 Identities=32% Similarity=0.556 Sum_probs=206.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
.|+.+||.++|||||+.++++. ..|..+++.++|+|++..++.++.++..+.|+|.|||++|+..+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~-------------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGG-------------VTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhccc-------------ccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHH
Confidence 5889999999999999999842 467889999999999999999999999999999999999999999
Q ss_pred HhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEe
Q 020176 147 TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRG 226 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~ 226 (330)
.++...|++++|||+++|+..|+.||+..+..+|+++.++|+||+|++++.+ +++.++++++.+.+ .+.|+|++
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r----~e~~i~~Il~~l~l--~~~~i~~~ 142 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEAR----IEQKIKQILADLSL--ANAKIFKT 142 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHH----HHHHHHHHHhhccc--cccccccc
Confidence 9999999999999999999999999999999999999899999999998643 33344444444443 56789999
Q ss_pred eccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCC
Q 020176 227 SATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQG 306 (330)
Q Consensus 227 Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~ 306 (330)
|++++ +|+++|-+.|.+....+.++.++||+++||+.|.++|+|||++|++.+|.+++||++++.|.+.
T Consensus 143 s~~~g----------~GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k- 211 (447)
T COG3276 143 SAKTG----------RGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINK- 211 (447)
T ss_pred ccccC----------CCHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCC-
Confidence 99997 5788888888876545678899999999999999999999999999999999999999999887
Q ss_pred CCceEEEEEEEeCceeecEEecCC
Q 020176 307 PSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 307 ~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
.++|+|||.|++++++|.||+
T Consensus 212 ---~v~VRsIq~~d~d~~~a~AG~ 232 (447)
T COG3276 212 ---EVRVRSIQAHDVDVEEAKAGQ 232 (447)
T ss_pred ---eEEEEeeeecCcchhhccccc
Confidence 699999999999999999996
No 24
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=1.6e-38 Score=295.56 Aligned_cols=245 Identities=36% Similarity=0.541 Sum_probs=200.6
Q ss_pred cCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee--------------
Q 020176 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-------------- 125 (330)
Q Consensus 60 ~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-------------- 125 (330)
.+.+++++|+++||.++|||||+++|++. ..|..++|+++|+|+......+..
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~-------------~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~ 70 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGV-------------WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTT 70 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCe-------------ecccCHhHHhcCcEEEecccccccccccccCccccccc
Confidence 45678899999999999999999999631 267888899999999875432111
Q ss_pred C------------CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCC-chhhHHHHHHHHHcCCCeEEEEEeecc
Q 020176 126 A------------KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQVGVPSLVCFLNKVD 192 (330)
Q Consensus 126 ~------------~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~-~~~~~~~l~~~~~~~~p~iivviNK~D 192 (330)
. ...++|||||||++|...+..++..+|++++|+|+.++. ..++.+++..+...+++++++|+||+|
T Consensus 71 ~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~D 150 (411)
T PRK04000 71 EPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKID 150 (411)
T ss_pred cccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeec
Confidence 1 257999999999999999999999999999999999887 788899999888888877889999999
Q ss_pred CcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEE
Q 020176 193 LVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIED 272 (330)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~ 272 (330)
+.++++.. ...+++..+++.+. ...+|++++||+++ .++.+|++.|...++.|.++.++|++|+|++
T Consensus 151 l~~~~~~~-~~~~~i~~~l~~~~--~~~~~ii~vSA~~g----------~gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~ 217 (411)
T PRK04000 151 LVSKERAL-ENYEQIKEFVKGTV--AENAPIIPVSALHK----------VNIDALIEAIEEEIPTPERDLDKPPRMYVAR 217 (411)
T ss_pred cccchhHH-HHHHHHHHHhcccc--CCCCeEEEEECCCC----------cCHHHHHHHHHHhCCCCCCCCCCCceEEEEe
Confidence 98754322 22235555554432 23579999999997 4589999999998888888889999999999
Q ss_pred EEeeCC--------CceEEEEEEEeeeeecCCEEEEecCCC------CC--CceEEEEEEEeCceeecEEecCC
Q 020176 273 VFSIQG--------RGTVATGRVEQGTIKVGEEVEVLGLTQ------GP--SLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 273 ~~~~~~--------~G~v~~g~v~~G~l~~g~~v~~~~~~~------~~--~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
+|.+++ +|+|+.|+|.+|.|++||.|.+.|.+. +. +..++|+|||.+++++++|.||+
T Consensus 218 ~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~ 291 (411)
T PRK04000 218 SFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGG 291 (411)
T ss_pred eeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCC
Confidence 998866 467999999999999999999998753 11 23589999999999999999996
No 25
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=3.2e-38 Score=309.13 Aligned_cols=263 Identities=26% Similarity=0.324 Sum_probs=215.9
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHH---------------hcCc--cceeeccccCCChhhhhcCceEEeEEEEe
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLA---------------EEGK--AKAIAFDEIDKAPEEKKRGITIATAHVEY 123 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~---------------~~g~--~~~~~~~~~~~~~~e~~~g~t~~~~~~~~ 123 (330)
..++.++|+++||+|+|||||+++|+.... ..|. ..+...+.+|..++|+++|+|++.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 446678999999999999999999985321 2233 23333457899999999999999999999
Q ss_pred eeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC-hHHHHHH
Q 020176 124 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELLEL 202 (330)
Q Consensus 124 ~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~-~~~~~~~ 202 (330)
+..+.+++|+|||||++|...+..++..+|++++|||+..++..++.+++.++...+++++|+++||+|+++ .++..+.
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~ 179 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDE 179 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887889999999985 3444566
Q ss_pred HHHHHHHHHHhcCCCCCCccEEEeeccccccCCcc--ccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCc
Q 020176 203 VEMELRELLSFYKFPGDEIPIIRGSATSALQGKNE--EIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRG 280 (330)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~--~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G 280 (330)
+.+++.++++.+++ .+++++|+||+++.+-... ...|+....|++.|... +.+.+..++||+|+|++++.....+
T Consensus 180 i~~~i~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~-~~~~~~~~~p~r~~i~~v~~~~~~~ 256 (632)
T PRK05506 180 IVADYRAFAAKLGL--HDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETV-EIASDRNLKDFRFPVQYVNRPNLDF 256 (632)
T ss_pred HHHHHHHHHHHcCC--CCccEEEEecccCCCccccccCCCcccHhHHHHHHhcC-CCCCCcCCCCceeeEEEEEecCCCc
Confidence 66778888888776 4578999999986443221 23455567788888764 5566668899999999998754322
Q ss_pred eEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 281 TVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 281 ~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
..+.|+|.+|+|++||+|.++|.+. .++|+|||++++++++|.||+
T Consensus 257 ~g~~G~v~~G~l~~gd~v~i~P~~~----~~~VksI~~~~~~~~~a~aG~ 302 (632)
T PRK05506 257 RGFAGTVASGVVRPGDEVVVLPSGK----TSRVKRIVTPDGDLDEAFAGQ 302 (632)
T ss_pred eEEEEEEecceeecCCEEEEcCCCc----eEEEEEEEECCceeCEEcCCC
Confidence 3378999999999999999998764 799999999999999999996
No 26
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-38 Score=292.14 Aligned_cols=263 Identities=30% Similarity=0.468 Sum_probs=235.9
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHH---------------HHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITK---------------VLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 126 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~---------------~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~ 126 (330)
.+.+++++++||+++|||||+++|+. .....|+..+...|.+|.+.+|+++|+|.+.....|+..
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 35778999999999999999999962 234567888888899999999999999999999999999
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCC-------CchhhHHHHHHHHHcCCCeEEEEEeeccCcC-hHH
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-------PMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEE 198 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~-------~~~~~~~~l~~~~~~~~p~iivviNK~D~~~-~~~ 198 (330)
.+.++|+|+|||.+|..+|+.++.++|++++|||++.+ ...|++||..+++.+|+.++||++||||+++ .++
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHH
Confidence 99999999999999999999999999999999999864 3489999999999999999999999999997 567
Q ss_pred HHHHHHHHHHHHH-HhcCCCCCCccEEEeeccccccCC-----ccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEE
Q 020176 199 LLELVEMELRELL-SFYKFPGDEIPIIRGSATSALQGK-----NEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIED 272 (330)
Q Consensus 199 ~~~~~~~~~~~~~-~~~~~~~~~~pv~~~Sa~~~~~g~-----~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~ 272 (330)
++++++..+..+| +.+|+...++.++|+|+.+|-|-. |.-..|+..+.||+.|.. +..|.++.+.||++.|.+
T Consensus 334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~~~kPl~ltIsd 412 (603)
T KOG0458|consen 334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERPIDKPLRLTISD 412 (603)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCCcccCCeEEEhhh
Confidence 8899999999999 899998888999999988864321 222446777899999998 666788899999999999
Q ss_pred EEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecC
Q 020176 273 VFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVS 329 (330)
Q Consensus 273 ~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g 329 (330)
++..++.|..++|+|.+|.|++||+|+++|+.. .++|++|.+++++...|.||
T Consensus 413 i~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e----~~~vk~l~~~~~~~~~a~AG 465 (603)
T KOG0458|consen 413 IYPLPSSGVSISGKIESGYIQPGQKLYIMTSRE----DATVKGLTSNDEPKTWAVAG 465 (603)
T ss_pred eeecCCCeeEEEEEEeccccccCCEEEEecCcc----eEEEEeeecCCCcceeEeeC
Confidence 999999999999999999999999999999887 59999999999999999998
No 27
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-39 Score=276.45 Aligned_cols=260 Identities=29% Similarity=0.393 Sum_probs=217.6
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHH---H-------hc-----Ccc-cee-eccccCCChhhhhcCceEEeEEEEee
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVL---A-------EE-----GKA-KAI-AFDEIDKAPEEKKRGITIATAHVEYE 124 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~---~-------~~-----g~~-~~~-~~~~~~~~~~e~~~g~t~~~~~~~~~ 124 (330)
.+..++++.+|+++-||||||++|+... . .+ |.. ... ..-..|-.+.|++.|+|++.....|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 3556899999999999999999997421 0 00 110 011 11134678899999999999999999
Q ss_pred eCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC-hHHHHHHH
Q 020176 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELLELV 203 (330)
Q Consensus 125 ~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~-~~~~~~~~ 203 (330)
.+.+++++.|||||+.|.++|..+...||++|++|||..|+..|+++|-..+..+|++++++.+|||||++ .++.++.+
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I 162 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAI 162 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 56778999
Q ss_pred HHHHHHHHHhcCCCCCCccEEEeeccccccC--CccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeC--CC
Q 020176 204 EMELRELLSFYKFPGDEIPIIRGSATSALQG--KNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQ--GR 279 (330)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g--~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~--~~ 279 (330)
.++...+.+++++. ...++|+||+.|.|- .....+|+..+.||+.|...-. ......++|+|+|+.+.... ++
T Consensus 163 ~~dy~~fa~~L~~~--~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i-~~~~~~~~~RfPVQ~V~Rp~~dfR 239 (431)
T COG2895 163 VADYLAFAAQLGLK--DVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEI-ADDRSAKAFRFPVQYVNRPNLDFR 239 (431)
T ss_pred HHHHHHHHHHcCCC--cceEEechhccCCcccccccCCCcccCccHHHHHhhccc-cccccccceeeceEEecCCCCccc
Confidence 99999999999984 457999999885443 2234567777888888876333 34456678999999998644 45
Q ss_pred ceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 280 GTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 280 G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
| +.|+|.+|.+++||+|++.|++. ..+|++|..++.++++|.+|+
T Consensus 240 G--yaGtiasG~v~~Gd~vvvlPsG~----~s~V~~Ivt~dg~~~~A~aG~ 284 (431)
T COG2895 240 G--YAGTIASGSVKVGDEVVVLPSGK----TSRVKRIVTFDGELAQASAGE 284 (431)
T ss_pred c--cceeeeccceecCCeEEEccCCC----eeeEEEEeccCCchhhccCCc
Confidence 6 99999999999999999999988 599999999999999999996
No 28
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=298.12 Aligned_cols=263 Identities=27% Similarity=0.341 Sum_probs=214.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
..+||+|+||.++|||||+++|+.......+......+.+|..+.|+.+|+|+......+.+.+..++|||||||.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 35799999999999999999998532110011111124678889999999999999888888999999999999999999
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC--CCc
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG--DEI 221 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 221 (330)
.+..+++.+|++++|+|+.+++..++..++..+...++| .++++||+|+.... .+.+.+++.+++..++... ..+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip-~IVviNKiD~~~a~--~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLK-PIVVINKVDRPGAR--PDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCC-EEEEEECcCCCCCc--hhHHHHHHHHHHhccCccccccCC
Confidence 999999999999999999999999999999999999999 67899999987521 2233445666655444322 358
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEe
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVL 301 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~ 301 (330)
|++++||++++++.+......++..|++.+..++|+|..+.++||+++|++++.++++|++++|||.+|+|++||.|++.
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~ 240 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTII 240 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEe
Confidence 99999999987654444344578999999999999998888999999999999999999999999999999999999987
Q ss_pred cCCCCCCceEEEEEEEeC----ceeecEEecCC
Q 020176 302 GLTQGPSLKTTVTGVEMF----KKILDRGEVSW 330 (330)
Q Consensus 302 ~~~~~~~~~~~v~si~~~----~~~~~~a~~g~ 330 (330)
+.+. .+...+|.+|..+ +.++++|.||+
T Consensus 241 ~~~~-~~~~~rv~~l~~~~g~~~~~v~~a~AGd 272 (607)
T PRK10218 241 DSEG-KTRNAKVGKVLGHLGLERIETDLAEAGD 272 (607)
T ss_pred cCCC-cEeeEEEEEEEEEecCCceECCEEcCCC
Confidence 6532 1346788888765 57999999995
No 29
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1e-36 Score=271.89 Aligned_cols=264 Identities=27% Similarity=0.382 Sum_probs=226.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
+..+||||+.|+++|||||+..|++....-..........+|....|+++|+|+-.....+.+++.+|+|+|||||.||-
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 34579999999999999999999864322111222233468999999999999998888888899999999999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC--C
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD--E 220 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 220 (330)
.+..+.+...|.++++|||.+|+.+||+..+..+...|.+++ +|+||+|..... .+++.++.-+++-.++.+.+ +
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PI-VVvNKiDrp~Ar--p~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPI-VVINKIDRPDAR--PDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcE-EEEeCCCCCCCC--HHHHHHHHHHHHHHhCCChhhCC
Confidence 999999999999999999999999999999999999999855 789999998632 24455567777777776543 5
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEE
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEV 300 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~ 300 (330)
+|++..||+.|+.+.+.......+..|++.|..++|.|..+.++||+|+|...-+.++.|++..|||.+|++|+|+.|.+
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~ 239 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVAL 239 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEE
Confidence 89999999999888888888888999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCCCCCceEEEEEEEeCc----eeecEEecCC
Q 020176 301 LGLTQGPSLKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 301 ~~~~~~~~~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
...+ +.....+|..+-.|. .++++|.||.
T Consensus 240 i~~~-g~~~~gri~kllgf~GL~R~ei~eA~AGD 272 (603)
T COG1217 240 IKSD-GTTENGRITKLLGFLGLERIEIEEAEAGD 272 (603)
T ss_pred EcCC-CcEEeeEEEeeeeccceeeeecccccccC
Confidence 8644 346788999888776 6899999984
No 30
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.1e-38 Score=271.57 Aligned_cols=307 Identities=21% Similarity=0.264 Sum_probs=247.5
Q ss_pred ecCCCCccccCCccccccccCCCccccccccccccccccCCCCCc------hhhhh----hhhhcCCcceeEEEEEcCCC
Q 020176 6 LRNPNSKRIVPFSSQIYSCCRGSLSISDAFSANETSATRCGPSVN------PWWRS----MATFTRTKLHVNVGTIGHVD 75 (330)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~~I~v~G~~~ 75 (330)
|+|.|..+||...++..|++ ||++||.+++|....++..++. ....+ .....++.-+.+++++|..+
T Consensus 101 VeD~G~l~GL~deemnaSL~---TL~~MA~~lGAs~~vLrek~v~~~~~~~R~v~EVLVRKvPd~QqfievRvAVlGg~D 177 (591)
T KOG1143|consen 101 VEDGGILSGLTDEEMNASLR---TLRTMAQALGASMVVLREKDVTVKGSSRRTVVEVLVRKVPDSQQFIEVRVAVLGGCD 177 (591)
T ss_pred eccCceeeccCHHHHHHHHH---HHHHHHHHhCCceEEEEeeeeeccCCCcchhhhhhhhhCCCcccceEEEEEEecCcc
Confidence 78999999999999999999 9999999999987555532221 11222 22223446678999999999
Q ss_pred CCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEE--e-------------------eeCCeeEEEEe
Q 020176 76 HGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVE--Y-------------------ETAKRHYAHVD 134 (330)
Q Consensus 76 ~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~--~-------------------~~~~~~i~iiD 134 (330)
+|||||++.|++...++|.+.++.. +.++++|...|.|....... | +...+-++|||
T Consensus 178 ~GKSTLlGVLTQgeLDnG~GrARln--~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SSKlvTfiD 255 (591)
T KOG1143|consen 178 VGKSTLLGVLTQGELDNGNGRARLN--IFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSSKLVTFID 255 (591)
T ss_pred cCcceeeeeeecccccCCCCeeeee--hhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhhcceEEEee
Confidence 9999999999999999999988764 55677777777776553221 1 22346789999
Q ss_pred CCCchhhHHHHHHhhh--ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH
Q 020176 135 CPGHADYVKNMITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (330)
Q Consensus 135 tPG~~~~~~~~~~~~~--~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~ 212 (330)
.+||.+|.+.+..++. ..|++++|++|..|+...+++|+.++..+++| ++++++|+|+++...+.. ..+++..++.
T Consensus 256 LAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iP-fFvlvtK~Dl~~~~~~~~-tv~~l~nll~ 333 (591)
T KOG1143|consen 256 LAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIP-FFVLVTKMDLVDRQGLKK-TVKDLSNLLA 333 (591)
T ss_pred cccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCC-eEEEEEeeccccchhHHH-HHHHHHHHHh
Confidence 9999999999998887 57999999999999999999999999999999 888999999998654433 4447777777
Q ss_pred hcCC---------------------CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC------CCCCC
Q 020176 213 FYKF---------------------PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER------QLDKP 265 (330)
Q Consensus 213 ~~~~---------------------~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~------~~~~~ 265 (330)
..|+ .+..+|+|.+|..+| +++ .++..+.+.+++... -...|
T Consensus 334 ~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsG----------egl-~ll~~fLn~Lsp~~~~~e~~~L~q~~ 402 (591)
T KOG1143|consen 334 KAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSG----------EGL-RLLRTFLNCLSPAGTAEERIQLVQLP 402 (591)
T ss_pred hcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCc----------cch-hHHHHHHhhcCCcCChHHHHHHhcCc
Confidence 7764 223589999999886 233 344444444543221 24678
Q ss_pred eEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 266 ~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
..|+|+++|++|.+|+|+.|.+.+|.++.|+.+.++|.+.+.|.+.+|.||+++++++.-.+|||
T Consensus 403 ~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGq 467 (591)
T KOG1143|consen 403 AEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQ 467 (591)
T ss_pred ceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeeccccceeeecCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999997
No 31
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-36 Score=259.23 Aligned_cols=241 Identities=37% Similarity=0.600 Sum_probs=206.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEe-------------------
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY------------------- 123 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~------------------- 123 (330)
.+..||+++||+++|||||..+|++. -.+++.+|.++|+|+...+...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGv-------------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~ 74 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGV-------------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPK 74 (415)
T ss_pred CcceEeeeeeecccchhhheehhhce-------------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCC
Confidence 56789999999999999999999842 2467788889999988754321
Q ss_pred -e------eCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCC-CCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 124 -E------TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 124 -~------~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~-~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
+ .--+.+.|+|.|||+-++..|+++....|++++||+|++ .+++|++||+..+...+++++|+|-||+|+++
T Consensus 75 C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~ 154 (415)
T COG5257 75 CPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS 154 (415)
T ss_pred CCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec
Confidence 0 012568899999999999999999999999999999998 68899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEe
Q 020176 196 DEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFS 275 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~ 275 (330)
.++..+..+ ++.+|++-.. .++.|++|+||.... +++.|++++.+++|.|.++.+.|++|+|.++|+
T Consensus 155 ~E~AlE~y~-qIk~FvkGt~--Ae~aPIIPiSA~~~~----------NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFD 221 (415)
T COG5257 155 RERALENYE-QIKEFVKGTV--AENAPIIPISAQHKA----------NIDALIEAIEKYIPTPERDLDKPPRMYVARSFD 221 (415)
T ss_pred HHHHHHHHH-HHHHHhcccc--cCCCceeeehhhhcc----------CHHHHHHHHHHhCCCCccCCCCCceEEEEeecc
Confidence 766555444 7777777543 478999999999874 599999999999999999999999999999998
Q ss_pred eCC--------CceEEEEEEEeeeeecCCEEEEecCCC----C----CCceEEEEEEEeCceeecEEecC
Q 020176 276 IQG--------RGTVATGRVEQGTIKVGEEVEVLGLTQ----G----PSLKTTVTGVEMFKKILDRGEVS 329 (330)
Q Consensus 276 ~~~--------~G~v~~g~v~~G~l~~g~~v~~~~~~~----~----~~~~~~v~si~~~~~~~~~a~~g 329 (330)
++- +|-|+.|.+.+|.|++||++.+.|.-. + .++..+|.||+-.++.+++|.+|
T Consensus 222 VNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PG 291 (415)
T COG5257 222 VNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVEEARPG 291 (415)
T ss_pred cCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCCeeeeeccCC
Confidence 854 578999999999999999999987531 1 25788999999999999999997
No 32
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-37 Score=277.20 Aligned_cols=246 Identities=29% Similarity=0.371 Sum_probs=203.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC---eeEEEEeCCCch
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK---RHYAHVDCPGHA 139 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~---~~i~iiDtPG~~ 139 (330)
.+.+|++|+.|.++|||||..+|+....-.. ........+|+.+.|+++|+|+......+-+.+ +.+++||||||.
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~-~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTID-NNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCC-CCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence 5678999999999999999999986533110 111223458999999999999998776665555 889999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
||..+..+.+..||++|+||||++|+++||...+.++.+.+.. +|.|+||+|+...+ .+.++.++.+++...
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~-iIpVlNKIDlp~ad--pe~V~~q~~~lF~~~----- 208 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLA-IIPVLNKIDLPSAD--PERVENQLFELFDIP----- 208 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCe-EEEeeeccCCCCCC--HHHHHHHHHHHhcCC-----
Confidence 9999999999999999999999999999999999999999999 88999999998732 134555555555432
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEE
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVE 299 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~ 299 (330)
.-+++.+||++|+ ++.++|+++.+.+|+|....++||++.+++.+.+.++|.+.+++|..|.+++||+|.
T Consensus 209 ~~~~i~vSAK~G~----------~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~ 278 (650)
T KOG0462|consen 209 PAEVIYVSAKTGL----------NVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQ 278 (650)
T ss_pred ccceEEEEeccCc----------cHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEE
Confidence 2479999999985 488899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCceEEEEEEEeCce-eecEEecC
Q 020176 300 VLGLTQGPSLKTTVTGVEMFKK-ILDRGEVS 329 (330)
Q Consensus 300 ~~~~~~~~~~~~~v~si~~~~~-~~~~a~~g 329 (330)
...+++. +.+++.+|....+ ++.+-.||
T Consensus 279 ~~~t~~~--yev~~vgvm~p~~~~~~~l~ag 307 (650)
T KOG0462|consen 279 SAATGKS--YEVKVVGVMRPEMTPVVELDAG 307 (650)
T ss_pred EeecCcc--eEeEEeEEeccCceeeeeeccc
Confidence 8877763 6677777666653 44444444
No 33
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=2.2e-35 Score=284.78 Aligned_cols=244 Identities=27% Similarity=0.370 Sum_probs=198.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee-----CCeeEEEEeCCCc
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-----AKRHYAHVDCPGH 138 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-----~~~~i~iiDtPG~ 138 (330)
..+||+++||+++|||||+++|+......... ....+..|..+.|+.+|+|+......+.+ ....++|||||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~-~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~ 80 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISER-EMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 80 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccc-cccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc
Confidence 35799999999999999999998632111110 11234567888999999999877655543 2367999999999
Q ss_pred hhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 139 ~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
.+|...+..+++.+|++|+|+|++++...++.+++..+...++| +++|+||+|+.... .+...+++.+ .+++.
T Consensus 81 ~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~--~~~~~~el~~---~lg~~- 153 (595)
T TIGR01393 81 VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSAD--PERVKKEIEE---VIGLD- 153 (595)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccC--HHHHHHHHHH---HhCCC-
Confidence 99999999999999999999999999999999888888888998 88999999986422 1222223333 33432
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEE
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEV 298 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v 298 (330)
..+++++||+++ .++.+|++++.+.+|+|..+.+.|++++|++++.++++|+|++|||.+|+|++||+|
T Consensus 154 -~~~vi~vSAktG----------~GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v 222 (595)
T TIGR01393 154 -ASEAILASAKTG----------IGIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKI 222 (595)
T ss_pred -cceEEEeeccCC----------CCHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEE
Confidence 135899999997 469999999999999998888999999999999999999999999999999999999
Q ss_pred EEecCCCCCCceEEEEEEEeCc---eeecEEecCC
Q 020176 299 EVLGLTQGPSLKTTVTGVEMFK---KILDRGEVSW 330 (330)
Q Consensus 299 ~~~~~~~~~~~~~~v~si~~~~---~~~~~a~~g~ 330 (330)
++.+.+. ..+|.+|..++ .++++|.||+
T Consensus 223 ~~~~~~~----~~~v~~i~~~~~~~~~v~~~~aGd 253 (595)
T TIGR01393 223 RFMSTGK----EYEVDEVGVFTPKLTKTDELSAGE 253 (595)
T ss_pred EEecCCC----eeEEeEEEEecCCceECCEEcCCC
Confidence 9988765 57888988877 7889999985
No 34
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-36 Score=259.42 Aligned_cols=244 Identities=32% Similarity=0.589 Sum_probs=207.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee---------eCCeeEEEEeC
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE---------TAKRHYAHVDC 135 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~---------~~~~~i~iiDt 135 (330)
.+|++++||.++|||||..+|... +... ..|+++...++|+|.+..+-.+. .+..+++++|+
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~----~STa-----AFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDC 77 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSEL----GSTA-----AFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDC 77 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhh----ccch-----hhccCCcccccceeEeecceeeecccccccCccccceeEEEeC
Confidence 479999999999999999999732 2222 35788888889999987654432 23357899999
Q ss_pred CCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHH---HHHHHHHHHHHHHH
Q 020176 136 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEE---LLELVEMELRELLS 212 (330)
Q Consensus 136 PG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~---~~~~~~~~~~~~~~ 212 (330)
|||...++..+.+....|..++|||+..|.+.|+.|++.+...+-.+ .++|+||+|...+.. ..+....+++.-++
T Consensus 78 PGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~k-lvvvinkid~lpE~qr~ski~k~~kk~~KtLe 156 (522)
T KOG0461|consen 78 PGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKK-LVVVINKIDVLPENQRASKIEKSAKKVRKTLE 156 (522)
T ss_pred CCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccc-eEEEEeccccccchhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887777655 778999999987633 34455567777888
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeee
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTI 292 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l 292 (330)
..++. .+.|++++||..|. ...+.+.+|.+.+.+.+-.|.|+.++||.|.|+++|.++|.|+|.+|+|.+|.+
T Consensus 157 ~t~f~-g~~PI~~vsa~~G~------~~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~ 229 (522)
T KOG0461|consen 157 STGFD-GNSPIVEVSAADGY------FKEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVL 229 (522)
T ss_pred hcCcC-CCCceeEEecCCCc------cchhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEE
Confidence 88874 66899999999873 233678999999999999999999999999999999999999999999999999
Q ss_pred ecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecC
Q 020176 293 KVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVS 329 (330)
Q Consensus 293 ~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g 329 (330)
+.|+.|.+...+. ..+|||||++++++-+|.+|
T Consensus 230 ~ln~~iE~PAL~e----~rkVKslqmf~~~vtsa~~G 262 (522)
T KOG0461|consen 230 RLNTEIEFPALNE----KRKVKSLQMFKQRVTSAAAG 262 (522)
T ss_pred ecCcEEeecccch----hhhhhhHHHHhhhhhhhhcc
Confidence 9999999766655 68999999999999999877
No 35
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=3.8e-35 Score=283.45 Aligned_cols=245 Identities=27% Similarity=0.383 Sum_probs=198.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee-----CCeeEEEEeCCC
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-----AKRHYAHVDCPG 137 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-----~~~~i~iiDtPG 137 (330)
...+||+|+||.++|||||+++|+......... ....+.+|..+.|+.+|+|+......+.+ .+..++||||||
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~-~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG 83 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSER-EMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG 83 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCccc-ccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence 346799999999999999999998532111110 11234578889999999999876655533 357899999999
Q ss_pred chhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
|.+|...+..+++.+|++|+|+|++++.+.++.+++..+...++| +++|+||+|+.... .+...+++.+ .+++.
T Consensus 84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl~~a~--~~~v~~ei~~---~lg~~ 157 (600)
T PRK05433 84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLPAAD--PERVKQEIED---VIGID 157 (600)
T ss_pred cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCccc--HHHHHHHHHH---HhCCC
Confidence 999999999999999999999999999999999999888888999 88999999986522 1222223333 33432
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCE
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE 297 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~ 297 (330)
..+++++||+++ .++.+|++++...+|+|..+.+.|++++|++++.++++|++++|||.+|+|++||+
T Consensus 158 --~~~vi~iSAktG----------~GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~ 225 (600)
T PRK05433 158 --ASDAVLVSAKTG----------IGIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDK 225 (600)
T ss_pred --cceEEEEecCCC----------CCHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCE
Confidence 134899999997 46999999999999999888899999999999999999999999999999999999
Q ss_pred EEEecCCCCCCceEEEEEEEeC---ceeecEEecCC
Q 020176 298 VEVLGLTQGPSLKTTVTGVEMF---KKILDRGEVSW 330 (330)
Q Consensus 298 v~~~~~~~~~~~~~~v~si~~~---~~~~~~a~~g~ 330 (330)
|++.+.+. ..+|.+|..+ ..++++|.||+
T Consensus 226 i~~~~~~~----~~~V~~i~~~~~~~~~v~~~~aGd 257 (600)
T PRK05433 226 IKMMSTGK----EYEVDEVGVFTPKMVPVDELSAGE 257 (600)
T ss_pred EEEecCCc----eEEEEEeeccCCCceECcEEcCCC
Confidence 99998765 5788888865 47899999996
No 36
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=100.00 E-value=3.6e-37 Score=268.21 Aligned_cols=306 Identities=21% Similarity=0.259 Sum_probs=240.4
Q ss_pred cCCCCccccCCccccccccCCCccccccccccccccccC-----CCCCchhhhhhhhhcCCcceeEEEEEcCCCCCHHHH
Q 020176 7 RNPNSKRIVPFSSQIYSCCRGSLSISDAFSANETSATRC-----GPSVNPWWRSMATFTRTKLHVNVGTIGHVDHGKTTL 81 (330)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~I~v~G~~~~GKSTL 81 (330)
..||+..||+++++..|.. +...++....+...... ......|...........-+.+|+++|.+++|||||
T Consensus 73 gsdg~~sGLseed~eas~a---t~~~~ae~I~Adv~klreR~~~gG~~~~~liRk~~~~~DF~E~RVAVVGNVDAGKSTL 149 (641)
T KOG0463|consen 73 GSDGPKSGLSEEDLEASAA---TQLKIAEKIPADVTKLRERKQTGGGTEVWLIRKPPTEKDFIEARVAVVGNVDAGKSTL 149 (641)
T ss_pred CCCCCccCCCHHHHHHHHH---HHHHHHhhCccHhhhhhhHHhcCCCeeEEEEeCCCCCccceeEEEEEEecccCCccee
Confidence 5689999999999999998 89999988888764333 223344544443444456678999999999999999
Q ss_pred HHHHHHHHHhcCccceeeccccCCChhhhhcCceEEe--EEEEe-----------------------eeCCeeEEEEeCC
Q 020176 82 TAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEY-----------------------ETAKRHYAHVDCP 136 (330)
Q Consensus 82 i~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~--~~~~~-----------------------~~~~~~i~iiDtP 136 (330)
++.|++...++|++.++..-+ ++.+|.+.|.|... ...-| +...+.++|||.+
T Consensus 150 LGVLTHgeLDnGRG~ARqkLF--RHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkIce~saKviTFIDLA 227 (641)
T KOG0463|consen 150 LGVLTHGELDNGRGAARQKLF--RHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKICEDSAKVITFIDLA 227 (641)
T ss_pred EeeeeecccccCccHHHHHHh--hhhhhcccCccccccccceeeccccccccCCCCCCCcccceeeccccceeEEEEecc
Confidence 999999999999887765433 34444444444332 11111 1223568999999
Q ss_pred CchhhHHHHHHhhh--ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 137 GHADYVKNMITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 137 G~~~~~~~~~~~~~--~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
||++|++.+..++. ..|+.+++|-++.|+...+++|+.++..+.+| +++|++|+|.++..-+.+.+ +.+..+++.-
T Consensus 228 GHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VP-VfvVVTKIDMCPANiLqEtm-Kll~rllkS~ 305 (641)
T KOG0463|consen 228 GHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVP-VFVVVTKIDMCPANILQETM-KLLTRLLKSP 305 (641)
T ss_pred chhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCc-EEEEEEeeccCcHHHHHHHH-HHHHHHhcCC
Confidence 99999999988886 68999999999999999999999999999999 77899999999865443333 3566667665
Q ss_pred CCC---------------------CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCC-CCCCCCCeEEEEEE
Q 020176 215 KFP---------------------GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP-ERQLDKPFLMPIED 272 (330)
Q Consensus 215 ~~~---------------------~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~-~~~~~~~~~~~i~~ 272 (330)
|+. ...+|+|.+|..++. | ..||..+.+.++.. .-..+.|..|+|++
T Consensus 306 gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~---N--------L~LLkmFLNlls~R~~~~E~~PAeFQIDD 374 (641)
T KOG0463|consen 306 GCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGT---N--------LPLLKMFLNLLSLRRQLNENDPAEFQIDD 374 (641)
T ss_pred CcccCcEEEecccceEEeeccCccccccceEEeccccCC---C--------hHHHHHHHhhcCcccccccCCCcceeecc
Confidence 531 124889999888753 2 44566666666532 23568899999999
Q ss_pred EEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 273 VFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 273 ~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
+|.+||+|+|+.|+.++|+|+.+|.+.++|+..+.|.+..|+||++.+.+|..++|||
T Consensus 375 ~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQ 432 (641)
T KOG0463|consen 375 IYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQ 432 (641)
T ss_pred eEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999998
No 37
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1e-33 Score=237.63 Aligned_cols=194 Identities=77% Similarity=1.143 Sum_probs=167.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
++++|+++||+++|||||+++|+......|+........+|..+.|+.+|+|++.....++..+.+++|+|||||.+|..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 35799999999999999999999876655654433344678999999999999999888888889999999999999999
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccE
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPI 223 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 223 (330)
.+..++..+|++++|+|+.++...++.+++..+...++|++|+++||+|+...++..+.+.+++.++++.++++..++|+
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~i 160 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPI 160 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeE
Confidence 99999999999999999999999999999999999999878889999999866666677888999999999988788999
Q ss_pred EEeeccccccCCccccchh-hHHHHHHHHhhhCCCC
Q 020176 224 IRGSATSALQGKNEEIGKK-AILKLMDAVDEYIPDP 258 (330)
Q Consensus 224 ~~~Sa~~~~~g~~~~~~~~-~i~~ll~~l~~~~~~~ 258 (330)
+|+||+++.+..+. ..|+ ++..|+++|.+..|.|
T Consensus 161 ipiSa~~g~n~~~~-~~w~~~~~~l~~~l~~~~~~~ 195 (195)
T cd01884 161 VRGSALKALEGDDP-NKWVKKILELLDALDSYIPTP 195 (195)
T ss_pred EEeeCccccCCCCC-CcchhcHhHHHHHHHhCCCCC
Confidence 99999998775442 3333 4899999999877643
No 38
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.5e-33 Score=249.28 Aligned_cols=236 Identities=27% Similarity=0.411 Sum_probs=194.3
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee-----CCeeEEEEeCC
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-----AKRHYAHVDCP 136 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-----~~~~i~iiDtP 136 (330)
.+..+|..|+.|.++|||||..+|+....-.. .+......+|..+.|+++|+|+......+.+ ..+.++|||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~-~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLS-EREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcC-hHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 35568999999999999999999985422111 1122233578899999999999887655443 34788999999
Q ss_pred CchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
||.||..+..+++..|.++|+||||++|+++||.....++...+.. +|.|+||+|+...+ .+.+++++.+ -+|+
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~Le-IiPViNKIDLP~Ad--pervk~eIe~---~iGi 158 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPAAD--PERVKQEIED---IIGI 158 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcE-EEEeeecccCCCCC--HHHHHHHHHH---HhCC
Confidence 9999999999999999999999999999999999999999999999 88999999998632 1334444444 4466
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~ 296 (330)
+..+ .+.+||++|. |++++|+++.+.+|+|..+.+.|++..|++++.++++|.|+.-||..|++++||
T Consensus 159 d~~d--av~~SAKtG~----------gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gd 226 (603)
T COG0481 159 DASD--AVLVSAKTGI----------GIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGD 226 (603)
T ss_pred Ccch--heeEecccCC----------CHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCC
Confidence 4443 7889999984 699999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCceEEEEEEEeCc
Q 020176 297 EVEVLGLTQGPSLKTTVTGVEMFK 320 (330)
Q Consensus 297 ~v~~~~~~~~~~~~~~v~si~~~~ 320 (330)
+|.+..++. .-.|..+-.+.
T Consensus 227 ki~~m~tg~----~y~V~evGvft 246 (603)
T COG0481 227 KIRMMSTGK----EYEVDEVGIFT 246 (603)
T ss_pred EEEEEecCC----EEEEEEEeecc
Confidence 999987766 35555555444
No 39
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=3.6e-32 Score=261.29 Aligned_cols=229 Identities=30% Similarity=0.341 Sum_probs=177.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCe-eEEEEeCCCchhhH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKR-HYAHVDCPGHADYV 142 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~-~i~iiDtPG~~~~~ 142 (330)
+.++|+++|++|+|||||+++|.+..... ....|+|.......+...+. .++|||||||++|.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~----------------~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~ 149 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQ----------------GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT 149 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccc----------------ccCCceeecceEEEEEECCCcEEEEEECCCCcchh
Confidence 44689999999999999999997421110 11236776665555555444 89999999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHH---HHHhcCCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRE---LLSFYKFPGD 219 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 219 (330)
..+..++..+|++++|+|++++...++.+++..+...++| +++++||+|+..... +.+.+++.+ ....+ +.
T Consensus 150 ~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~~--e~v~~~L~~~g~~~~~~---~~ 223 (587)
T TIGR00487 150 SMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP-IIVAINKIDKPEANP--DRVKQELSEYGLVPEDW---GG 223 (587)
T ss_pred hHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcccccCCH--HHHHHHHHHhhhhHHhc---CC
Confidence 9999999999999999999999999999999999999999 889999999964211 122222221 11112 13
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhh--CCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCE
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY--IPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE 297 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~--~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~ 297 (330)
..+++++||+++ .++.+|++++... ++....+.+.|+++.|++++.++|+|++++|+|.+|+|++||.
T Consensus 224 ~~~~v~iSAktG----------eGI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~ 293 (587)
T TIGR00487 224 DTIFVPVSALTG----------DGIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDI 293 (587)
T ss_pred CceEEEEECCCC----------CChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCE
Confidence 478999999997 4577777776432 2233345678999999999999999999999999999999999
Q ss_pred EEEecCCCCCCceEEEEEEEe-CceeecEEecCC
Q 020176 298 VEVLGLTQGPSLKTTVTGVEM-FKKILDRGEVSW 330 (330)
Q Consensus 298 v~~~~~~~~~~~~~~v~si~~-~~~~~~~a~~g~ 330 (330)
|.++|. ..+|++|+. +++.+++|.||+
T Consensus 294 iv~~~~------~~kVr~l~~~~g~~v~~a~~g~ 321 (587)
T TIGR00487 294 VVVGAA------YGRVRAMIDENGKSVKEAGPSK 321 (587)
T ss_pred EEECCC------ccEEEEEECCCCCCCCEECCCC
Confidence 998763 378999999 668999999985
No 40
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=1.2e-31 Score=263.07 Aligned_cols=230 Identities=31% Similarity=0.352 Sum_probs=180.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
.+.++|+|+|++|+|||||+++|.+..... ...+|+|.......+.+.+..++|||||||.+|.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~----------------~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~ 351 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAA----------------GEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT 351 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc----------------cccCceeeeccEEEEEECCEEEEEEECCCCccch
Confidence 455799999999999999999997321111 1124677777666677778899999999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHH---HHHhcCCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRE---LLSFYKFPGD 219 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 219 (330)
..+..++..+|++|+|+|++++...++.+++..+...++| +|+++||+|+.... .+.+..++.+ +.+.+ +.
T Consensus 352 ~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~--~e~V~~eL~~~~~~~e~~---g~ 425 (787)
T PRK05306 352 AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDKPGAN--PDRVKQELSEYGLVPEEW---GG 425 (787)
T ss_pred hHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECccccccC--HHHHHHHHHHhcccHHHh---CC
Confidence 9999999999999999999999999999999999999999 88999999996521 1122222221 12222 23
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhhC--CCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCE
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI--PDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE 297 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~--~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~ 297 (330)
.+|++++||+++ .++.+|++++.... .....+.+.++.+.|++++.++++|+|++++|.+|+|++||.
T Consensus 426 ~vp~vpvSAktG----------~GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~ 495 (787)
T PRK05306 426 DTIFVPVSAKTG----------EGIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDI 495 (787)
T ss_pred CceEEEEeCCCC----------CCchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCE
Confidence 589999999997 34667776665321 123345678999999999999999999999999999999999
Q ss_pred EEEecCCCCCCceEEEEEEEeC-ceeecEEecCC
Q 020176 298 VEVLGLTQGPSLKTTVTGVEMF-KKILDRGEVSW 330 (330)
Q Consensus 298 v~~~~~~~~~~~~~~v~si~~~-~~~~~~a~~g~ 330 (330)
|++++ ...+|++|+.. +.++++|.||+
T Consensus 496 vv~g~------~~gkVr~m~~~~~~~v~~A~pGd 523 (787)
T PRK05306 496 VVAGT------TYGRVRAMVDDNGKRVKEAGPST 523 (787)
T ss_pred EEECC------cEEEEEEEECCCCCCCCEEcCCC
Confidence 98863 25899999984 67999999985
No 41
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=8.9e-31 Score=249.20 Aligned_cols=253 Identities=24% Similarity=0.342 Sum_probs=194.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHH---HhcCccc---eeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCC
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAK---AIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCP 136 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~---~~~g~~~---~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtP 136 (330)
...++|+|+||+|+|||||+++|+... ...|... .......|..+.|+++|+++......+++.+..+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 345799999999999999999997421 1222211 1111235778899999999999988899999999999999
Q ss_pred CchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh--HHHHHHHHHHHH------
Q 020176 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED--EELLELVEMELR------ 208 (330)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~--~~~~~~~~~~~~------ 208 (330)
||.+|...+..+++.+|++|+|+|+.+++..++...+..+...++| +++++||+|+... .+..+.+++.+.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~ 166 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDRDGREPLELLDEIEEVLGIACAPI 166 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEEECCcccccCHHHHHHHHHHHhCCCCeeE
Confidence 9999999999999999999999999999999999999999999999 8899999998652 122222221100
Q ss_pred -------------------------------------------HHHHhc---------------------------CCCC
Q 020176 209 -------------------------------------------ELLSFY---------------------------KFPG 218 (330)
Q Consensus 209 -------------------------------------------~~~~~~---------------------------~~~~ 218 (330)
++++++ -..+
T Consensus 167 ~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~ 246 (526)
T PRK00741 167 TWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAG 246 (526)
T ss_pred EeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcC
Confidence 011100 0122
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC---------CCCCCeEEEEEEEE---eeCCCceEEEEE
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER---------QLDKPFLMPIEDVF---SIQGRGTVATGR 286 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~---------~~~~~~~~~i~~~~---~~~~~G~v~~g~ 286 (330)
..+|+++.||.++ .|+..||+.+..++|+|.. ..+.+|..+|+++. ..+++|++.+.|
T Consensus 247 ~~~PV~~GSA~~n----------~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvR 316 (526)
T PRK00741 247 ELTPVFFGSALNN----------FGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVR 316 (526)
T ss_pred CeEEEEEeecccC----------cCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEE
Confidence 3489999999997 4799999999999998842 12467999999997 457899999999
Q ss_pred EEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc----eeecEEecCC
Q 020176 287 VEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 287 v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
|.+|+|+.|+.|++...+. ..++..+.... .++++|.||.
T Consensus 317 V~sG~l~~g~~v~~~~~~k----~~ri~~~~~~~g~~~~~v~~a~aGD 360 (526)
T PRK00741 317 VCSGKFEKGMKVRHVRTGK----DVRISNALTFMAQDREHVEEAYAGD 360 (526)
T ss_pred EeccEECCCCEEEeccCCc----eEEecceEEEecCCceECceeCCCC
Confidence 9999999999999876554 46666655443 6899999984
No 42
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=7.6e-31 Score=259.03 Aligned_cols=250 Identities=25% Similarity=0.336 Sum_probs=193.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHh---cCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAE---EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
...+||+|+|++|+|||||+++|+..... .|.... ..+.+|..+.|+.+|+|++.....+.+.+..++|+|||||.
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~-~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHD-GAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccC-CcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 34689999999999999999999843221 121111 12467889999999999999888898899999999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH-------
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS------- 212 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~------- 212 (330)
+|..++..+++.+|++++|+|+.+|+..++..++..+...++| +|+++||+|+.... . ..+.+++++.+.
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~~-~-~~~~~~i~~~l~~~~~~~~ 163 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVP-RIAFVNKMDRTGAD-F-YRVVEQIKDRLGANPVPIQ 163 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCCCCCC-H-HHHHHHHHHHhCCCeeeEE
Confidence 9999999999999999999999999999999999999999999 66899999987521 1 111112211111
Q ss_pred --------------------------------------------------------------------------------
Q 020176 213 -------------------------------------------------------------------------------- 212 (330)
Q Consensus 213 -------------------------------------------------------------------------------- 212 (330)
T Consensus 164 ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~ 243 (693)
T PRK00007 164 LPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKA 243 (693)
T ss_pred ecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHH
Confidence
Q ss_pred ---hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC--------------------CCCCCeEEE
Q 020176 213 ---FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER--------------------QLDKPFLMP 269 (330)
Q Consensus 213 ---~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~--------------------~~~~~~~~~ 269 (330)
.....+..+|+++.||+++ .|+..||+.+..++|+|.. +.+.|+.++
T Consensus 244 ~l~~~~~~~~~~Pv~~gSa~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~ 313 (693)
T PRK00007 244 ALRKATIANEIVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSAL 313 (693)
T ss_pred HHHHHHhcCcEEEEEecccccC----------cCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEE
Confidence 1111123466777777664 4689999999999998742 235789999
Q ss_pred EEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc----eeecEEecCC
Q 020176 270 IEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 270 i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
|+++...++.|.+.++||++|+|++||.|++...+. ..+|.+|.... .++++|.||.
T Consensus 314 VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~----~eki~~l~~~~g~~~~~v~~~~aGd 374 (693)
T PRK00007 314 AFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGK----KERIGRILQMHANKREEIKEVRAGD 374 (693)
T ss_pred EEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCc----eeEeceeEEeccCCcccccccCCCc
Confidence 999999999999999999999999999998653332 45666666553 6889999884
No 43
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=2.6e-31 Score=263.72 Aligned_cols=263 Identities=29% Similarity=0.370 Sum_probs=195.1
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee----eCCeeEEEEeCCC
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE----TAKRHYAHVDCPG 137 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~----~~~~~i~iiDtPG 137 (330)
....+||+++||.++|||||+++|+.......+........+|..+.|+++|+|+......+. ..+..++|+||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 356789999999999999999999853211111111112357889999999999987655433 2467899999999
Q ss_pred chhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC------hHH---HHHHHHHHHH
Q 020176 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE------DEE---LLELVEMELR 208 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~------~~~---~~~~~~~~~~ 208 (330)
|.+|...+..+++.+|++++|+|+.+|+..++..+|..+...++| .|+++||+|+.. .++ .+..+.+++.
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~-~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~ 175 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVK-PVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVN 175 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCC-eEEEEECchhhcccccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888999 578999999863 112 1222233444
Q ss_pred HHHHhcC---------CCCCCccEEEeeccccccCCcccc----------chh---------------hHHHHHHHHhhh
Q 020176 209 ELLSFYK---------FPGDEIPIIRGSATSALQGKNEEI----------GKK---------------AILKLMDAVDEY 254 (330)
Q Consensus 209 ~~~~~~~---------~~~~~~pv~~~Sa~~~~~g~~~~~----------~~~---------------~i~~ll~~l~~~ 254 (330)
.++..+. +...+-.+++.||+.++. ..... ..+ -+..||+.+..+
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~-~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~ 254 (731)
T PRK07560 176 KLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWA-ISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKH 254 (731)
T ss_pred HHHHHhhhhhhhcceeecCCCCcEeeeecccccc-eeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHh
Confidence 5544432 112223477778876531 11000 000 012689999999
Q ss_pred CCCCCC-------------------------CCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCc
Q 020176 255 IPDPER-------------------------QLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSL 309 (330)
Q Consensus 255 ~~~~~~-------------------------~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~ 309 (330)
+|+|.. +.+.|+.++|++++..+++|+++++||.+|+|++||.|++.+.+.
T Consensus 255 lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~---- 330 (731)
T PRK07560 255 LPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKK---- 330 (731)
T ss_pred CCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCC----
Confidence 998842 235689999999999999999999999999999999999887654
Q ss_pred eEEEEEEEeC----ceeecEEecCC
Q 020176 310 KTTVTGVEMF----KKILDRGEVSW 330 (330)
Q Consensus 310 ~~~v~si~~~----~~~~~~a~~g~ 330 (330)
..+|..|... ..++++|.||+
T Consensus 331 ~~~v~~i~~~~g~~~~~v~~a~AGd 355 (731)
T PRK07560 331 KNRVQQVGIYMGPEREEVEEIPAGN 355 (731)
T ss_pred ceEeheehhhhcCCCceeeeECCCC
Confidence 4788888766 47899999985
No 44
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=5.9e-31 Score=259.97 Aligned_cols=250 Identities=25% Similarity=0.338 Sum_probs=194.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHH---hcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLA---EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
...+||+|+||+|+|||||+++|+.... ..|.... ..+.+|..+.|+.+|+|++.....+.+.+.+++|+|||||.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~-~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHD-GAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccC-CccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 3468999999999999999999985322 1121111 13467899999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHh------
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF------ 213 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~------ 213 (330)
+|..++..+++.+|++++|+|+.+++..++..++..+...++| +|+++||+|+...+ . ..+.+++++.+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~-~-~~~~~~i~~~l~~~~~~~~ 161 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVP-RIVFVNKMDRIGAD-F-FRSVEQIKDRLGANAVPIQ 161 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC-H-HHHHHHHHHHhCCCceeEE
Confidence 9999999999999999999999999999999999999999999 67899999998531 1 1111122222111
Q ss_pred --------------------------------------------------------------------------------
Q 020176 214 -------------------------------------------------------------------------------- 213 (330)
Q Consensus 214 -------------------------------------------------------------------------------- 213 (330)
T Consensus 162 iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~ 241 (691)
T PRK12739 162 LPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKA 241 (691)
T ss_pred ecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHH
Confidence
Q ss_pred ----cCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC-------------------CCCCCeEEEE
Q 020176 214 ----YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER-------------------QLDKPFLMPI 270 (330)
Q Consensus 214 ----~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~-------------------~~~~~~~~~i 270 (330)
.......+|+++.||.++ .|+..||+.+..++|+|.. +.+.|+.++|
T Consensus 242 ~l~~~~~~~~~~Pv~~gSa~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~V 311 (691)
T PRK12739 242 AIRKATINMEFFPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALA 311 (691)
T ss_pred HHHHHHHcCCEEEEEeccccCC----------ccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEE
Confidence 001112357777777775 4689999999999998742 3467899999
Q ss_pred EEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeC----ceeecEEecCC
Q 020176 271 EDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEVSW 330 (330)
Q Consensus 271 ~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~----~~~~~~a~~g~ 330 (330)
++++..+++|.+.++||++|+|++||.|++...+. ..+|.+|... ..++++|.||+
T Consensus 312 fK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~----~~~v~~l~~~~g~~~~~v~~~~aGd 371 (691)
T PRK12739 312 FKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGK----KERIGRLLQMHANKREEIKEVYAGD 371 (691)
T ss_pred EEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCc----eEEecceEEEecCCcccccccCCCC
Confidence 99999999999999999999999999998654333 3556555443 36889999885
No 45
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.98 E-value=2.9e-30 Score=245.79 Aligned_cols=253 Identities=24% Similarity=0.344 Sum_probs=195.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHH---HHhcCccce---eeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCC
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKV---LAEEGKAKA---IAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCP 136 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~---~~~~g~~~~---~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtP 136 (330)
...++|+|+||+|+|||||+++|+.. ....|.... ......|..+.|+.+|+++......+++.+..++|||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 45679999999999999999999632 112222110 012346788999999999999999999999999999999
Q ss_pred CchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC--hHHHHHHHHHHH-------
Q 020176 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE--DEELLELVEMEL------- 207 (330)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~--~~~~~~~~~~~~------- 207 (330)
||.+|...+..+++.+|++|+|+|+.+++..++..++..+...++| +++++||+|+.. ..++.+.+++.+
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~ 167 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRDPLELLDEVENELKINCAPI 167 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECccccCCCHHHHHHHHHHHhCCCCccE
Confidence 9999999999999999999999999999999999999988888999 888999999863 222222222110
Q ss_pred ----------------------------------------------------------H---HHHHhc--------CCCC
Q 020176 208 ----------------------------------------------------------R---ELLSFY--------KFPG 218 (330)
Q Consensus 208 ----------------------------------------------------------~---~~~~~~--------~~~~ 218 (330)
+ +++... -..+
T Consensus 168 ~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~ 247 (527)
T TIGR00503 168 TWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHGG 247 (527)
T ss_pred EEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhcC
Confidence 0 001110 0123
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCC---------CCCCeEEEEEEEEe--e-CCCceEEEEE
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQ---------LDKPFLMPIEDVFS--I-QGRGTVATGR 286 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~---------~~~~~~~~i~~~~~--~-~~~G~v~~g~ 286 (330)
..+|+++.||.++ .|+..||+.+..++|+|... .+.+|..+|+++.. + +++|++.+.|
T Consensus 248 ~~~PV~~GSA~~n----------~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~R 317 (527)
T TIGR00503 248 EMTPVFFGTALGN----------FGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMR 317 (527)
T ss_pred CeeEEEEeecccC----------ccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEE
Confidence 4579999999987 47999999999999988532 25679999999976 5 5899999999
Q ss_pred EEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc----eeecEEecCC
Q 020176 287 VEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 287 v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
|.+|+|+.|++|++...+. +.++..+.... .++++|.||.
T Consensus 318 V~sG~l~~g~~v~~~~~~k----~~ri~~~~~~~g~~~~~v~~a~aGD 361 (527)
T TIGR00503 318 VVSGKYEKGMKLKHVRTGK----DVVISDALTFMAGDREHVEEAYAGD 361 (527)
T ss_pred EeeeEEcCCCEEEecCCCC----cEEecchhhhhcCCceEcceeCCCC
Confidence 9999999999998876554 46777665543 6899999984
No 46
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.98 E-value=2.5e-30 Score=255.70 Aligned_cols=252 Identities=27% Similarity=0.364 Sum_probs=191.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhc---CccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEE---GKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~---g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
...+||+|+||+|+|||||+++|+...... +.... ..+.+|..+.|+.+|+|++.....+.+.+.+++||||||+.
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~-g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHD-GAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccC-CccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 346799999999999999999998532211 11111 12457888999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChH--HHHHHHHHHH----------
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE--ELLELVEMEL---------- 207 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~--~~~~~~~~~~---------- 207 (330)
+|...+..+++.+|++++|+|+.++...++.+++..+...++| +++++||+|+.... ...+.+.+.+
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip 165 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVP-RIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLP 165 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCC-EEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEec
Confidence 9999999999999999999999999999999999999999999 67899999987521 1111111100
Q ss_pred ---------------------------------------------------------HHHHHhc----------------
Q 020176 208 ---------------------------------------------------------RELLSFY---------------- 214 (330)
Q Consensus 208 ---------------------------------------------------------~~~~~~~---------------- 214 (330)
.++++.|
T Consensus 166 is~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~ 245 (689)
T TIGR00484 166 IGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIR 245 (689)
T ss_pred cccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 0011111
Q ss_pred --CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC-------------------CCCCCeEEEEEEE
Q 020176 215 --KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER-------------------QLDKPFLMPIEDV 273 (330)
Q Consensus 215 --~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~-------------------~~~~~~~~~i~~~ 273 (330)
-.....+|+++.||.++ .|+..||+.+..++|+|.. +.+.|+.++|+++
T Consensus 246 ~~~~~~~~~PV~~gSa~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~ 315 (689)
T TIGR00484 246 KGVLNCEFFPVLCGSAFKN----------KGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKV 315 (689)
T ss_pred HHHhcCCEEEEEeccccCC----------ccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEe
Confidence 01123367777777665 4689999999999998742 2257899999999
Q ss_pred EeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc----eeecEEecCC
Q 020176 274 FSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 274 ~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
...++.|.+.++||.+|+|+.||.|++...+. ..+|..|...+ .++++|.||.
T Consensus 316 ~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~----~~~i~~l~~~~g~~~~~v~~~~aGd 372 (689)
T TIGR00484 316 ATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNK----KERVGRLVKMHANNREEIKEVRAGD 372 (689)
T ss_pred eecCCCCeEEEEEEEEeEEcCCCEEEeCCCCc----eEEecceEEeecCCcccccccCCCC
Confidence 99999999999999999999999998654333 34555554443 6889999884
No 47
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.98 E-value=5.8e-31 Score=220.88 Aligned_cols=182 Identities=41% Similarity=0.635 Sum_probs=149.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccce--eeccccCCChhhhhcCceEEeEEEEee--eCCeeEEEEeCCCc
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKA--IAFDEIDKAPEEKKRGITIATAHVEYE--TAKRHYAHVDCPGH 138 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~--~~~~~~~~~~~e~~~g~t~~~~~~~~~--~~~~~i~iiDtPG~ 138 (330)
++.++|+++|++++|||||+++|+........... ......+..+.|..+++|+......+. .....++|+|||||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 35789999999999999999999965432222110 001236788999999999999988888 88999999999999
Q ss_pred hhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHH-HHHHhcCCC
Q 020176 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELR-ELLSFYKFP 217 (330)
Q Consensus 139 ~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~-~~~~~~~~~ 217 (330)
.+|..++..++..+|++|+|||+.+++..++.+++..+...++| +++|+||+|+. ..+..+ ..+++. .+++.++..
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~-~~~~~~-~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI-EKELEE-IIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS-HHHHHH-HHHHHHHHHHHHTTST
T ss_pred cceeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccch-hhhHHH-HHHHHHHHhccccccC
Confidence 99999999999999999999999999999999999999999999 88999999999 344433 444555 677888876
Q ss_pred C-CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 218 G-DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 218 ~-~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
+ ..+|++++||+++ .++.+|++++.+++|+
T Consensus 158 ~~~~~~vi~~Sa~~g----------~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 158 GEEIVPVIPISALTG----------DGIDELLEALVELLPS 188 (188)
T ss_dssp TTSTEEEEEEBTTTT----------BTHHHHHHHHHHHS--
T ss_pred ccccceEEEEecCCC----------CCHHHHHHHHHHhCcC
Confidence 5 4799999999997 4699999999999874
No 48
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.3e-30 Score=248.59 Aligned_cols=253 Identities=29% Similarity=0.387 Sum_probs=198.8
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHH---hcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC-eeEEEEeCCC
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLA---EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPG 137 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG 137 (330)
....+||+|+||.++|||||..+|+-... +.|..... ...+|..+.|++||+|+......+.+.+ ..++||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g-~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDG-AATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCC-CccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCC
Confidence 34568999999999999999999974322 22222211 2257999999999999999988888885 9999999999
Q ss_pred chhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh---------------------
Q 020176 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED--------------------- 196 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~--------------------- 196 (330)
|.||..++.++++.+|++++|+|+.+|++.|+...|+++...++| .++++||||....
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~ 164 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVP-RILFVNKMDRLGADFYLVVEQLKERLGANPVPVQ 164 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCC-eEEEEECccccccChhhhHHHHHHHhCCCceeee
Confidence 999999999999999999999999999999999999999999999 5578999998752
Q ss_pred -----------------------H-----------HHHHHHH----HHHH--------HHHHhcC---------------
Q 020176 197 -----------------------E-----------ELLELVE----MELR--------ELLSFYK--------------- 215 (330)
Q Consensus 197 -----------------------~-----------~~~~~~~----~~~~--------~~~~~~~--------------- 215 (330)
. ....... ..+. ++++.|-
T Consensus 165 ~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~ 244 (697)
T COG0480 165 LPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALR 244 (697)
T ss_pred ccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHH
Confidence 0 0000000 0000 2222221
Q ss_pred ---CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC--------------------CCCCCeEEEEEE
Q 020176 216 ---FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER--------------------QLDKPFLMPIED 272 (330)
Q Consensus 216 ---~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~--------------------~~~~~~~~~i~~ 272 (330)
+.....|+++.||..+ .++..||+++..++|.|.. +.++|+.+.+++
T Consensus 245 ~~~~~~~~~pvl~gsa~kn----------~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfK 314 (697)
T COG0480 245 KGTIAGKIVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFK 314 (697)
T ss_pred HhhhccceeeEEeeecccC----------CcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEE
Confidence 1122578888888764 4689999999999998832 237999999999
Q ss_pred EEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc----eeecEEecCC
Q 020176 273 VFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 273 ~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
+...++.|.+.++||.+|+|+.||++++...+. +.+|..|...+ ++++++.||.
T Consensus 315 i~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~----~erv~~l~~~~~~~~~~v~~~~AG~ 372 (697)
T COG0480 315 IMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKGK----KERVGRLLLMHGNEREEVDEVPAGD 372 (697)
T ss_pred eEecCCCCeEEEEEEeccEEcCCCEEEeCCCCc----cEEEEEEEEccCCceeecccccCcc
Confidence 999999999999999999999999998876554 67888877666 6888888884
No 49
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.97 E-value=3.3e-30 Score=250.88 Aligned_cols=230 Identities=27% Similarity=0.345 Sum_probs=175.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEE--eee--CCeeEEEEeCCCc
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVE--YET--AKRHYAHVDCPGH 138 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~--~~~--~~~~i~iiDtPG~ 138 (330)
.+.++|+|+|++|+|||||+++|....... ...+|+|.....+. +.. .+..++|||||||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~----------------~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh 305 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ----------------KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH 305 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc----------------ccCCccccccceEEEEEEecCCceEEEEEECCcH
Confidence 355799999999999999999997421111 11235554433322 222 3578999999999
Q ss_pred hhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHH---HHhcC
Q 020176 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELREL---LSFYK 215 (330)
Q Consensus 139 ~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~---~~~~~ 215 (330)
.+|...+..++..+|++|+|||+.++...++.+++..+...++| +|+++||+|+.... .+.+.+++... .+.++
T Consensus 306 e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iP-iIVViNKiDl~~~~--~e~v~~eL~~~~ll~e~~g 382 (742)
T CHL00189 306 EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVP-IIVAINKIDKANAN--TERIKQQLAKYNLIPEKWG 382 (742)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCce-EEEEEECCCccccC--HHHHHHHHHHhccchHhhC
Confidence 99999999999999999999999999999999999999999999 88999999997532 12222222221 12222
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC--CCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeee
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP--DPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIK 293 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~ 293 (330)
..+|++++||+++ .++.+|++++..+.. ....+.+.|+...|.++..++++|+|++|+|.+|+|+
T Consensus 383 ---~~vpvv~VSAktG----------~GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr 449 (742)
T CHL00189 383 ---GDTPMIPISASQG----------TNIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLH 449 (742)
T ss_pred ---CCceEEEEECCCC----------CCHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEe
Confidence 3489999999997 458888887765432 2223456788999999999999999999999999999
Q ss_pred cCCEEEEecCCCCCCceEEEEEEE-eCceeecEEecCC
Q 020176 294 VGEEVEVLGLTQGPSLKTTVTGVE-MFKKILDRGEVSW 330 (330)
Q Consensus 294 ~g~~v~~~~~~~~~~~~~~v~si~-~~~~~~~~a~~g~ 330 (330)
+||.|++++. ..+|++|. ..++++++|.||.
T Consensus 450 ~GD~vv~g~~------~gkVr~m~~~~~~~v~~a~pgd 481 (742)
T CHL00189 450 IGDIIVIGTS------YAKIRGMINSLGNKINLATPSS 481 (742)
T ss_pred cCCEEEECCc------ceEEEEEEcCCCcCccEEcCCC
Confidence 9999988762 47999998 4557999999984
No 50
>PRK13351 elongation factor G; Reviewed
Probab=99.97 E-value=5.5e-30 Score=253.77 Aligned_cols=251 Identities=30% Similarity=0.428 Sum_probs=194.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHh---cCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAE---EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (330)
..+||+|+|+.|+|||||+++|+..... .|.... .....|..+.|+.+++|+......+.+.+..++|||||||.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~-~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVED-GTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccC-CcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 4579999999999999999999853211 111110 112467778899999999988888888899999999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh--HHHHHHHHHHH-----------
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED--EELLELVEMEL----------- 207 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~--~~~~~~~~~~~----------- 207 (330)
|...+..+++.+|++++|+|+.++...++...+..+...++| +++|+||+|+... .+..+.+.+.+
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~P~ 164 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIP-RLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLPI 164 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 999999999999999999999999999999999999889999 7789999998752 11111111000
Q ss_pred ---------------------------------------------------------HHHHHhcC---------------
Q 020176 208 ---------------------------------------------------------RELLSFYK--------------- 215 (330)
Q Consensus 208 ---------------------------------------------------------~~~~~~~~--------------- 215 (330)
.++++.+-
T Consensus 165 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~ 244 (687)
T PRK13351 165 GSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLR 244 (687)
T ss_pred ccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 00111110
Q ss_pred ---CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC------------------CCCCCeEEEEEEEE
Q 020176 216 ---FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER------------------QLDKPFLMPIEDVF 274 (330)
Q Consensus 216 ---~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~------------------~~~~~~~~~i~~~~ 274 (330)
.....+|+++.||+++ .|+..||+.+..++|+|.. +.+.|+.++|++++
T Consensus 245 ~~~~~~~~~PV~~gSA~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~ 314 (687)
T PRK13351 245 EGTRSGHLVPVLFGSALKN----------IGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQ 314 (687)
T ss_pred HHHHhCCEEEEEecccCcC----------ccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEee
Confidence 0112478999999987 5799999999999998852 34678999999999
Q ss_pred eeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeC----ceeecEEecCC
Q 020176 275 SIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEVSW 330 (330)
Q Consensus 275 ~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~----~~~~~~a~~g~ 330 (330)
..+++|.++++||.+|+|++||+|++.+.+. ..+|..|... ..++++|.||+
T Consensus 315 ~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~----~~~i~~i~~~~g~~~~~v~~~~aGd 370 (687)
T PRK13351 315 YDPYAGKLTYLRVYSGTLRAGSQLYNGTGGK----REKVGRLFRLQGNKREEVDRAKAGD 370 (687)
T ss_pred ecCCCceEEEEEEeEEEEcCCCEEEeCCCCC----ceEeeeEEEEccCCeeECCccCCCC
Confidence 9999999999999999999999999887554 3555555444 47999999985
No 51
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.97 E-value=9.6e-30 Score=245.07 Aligned_cols=242 Identities=27% Similarity=0.304 Sum_probs=163.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceee----ccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA----FDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~----~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
+.+.|+++||+|+|||||+++|.+.....+...... .+..+....+...+...... ........++|||||||+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPL--PIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceecccc--ccccccCCEEEEECCChH
Confidence 345799999999999999999974321111100000 00000000000000000000 000001137999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh--------------------HHH
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED--------------------EEL 199 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~--------------------~~~ 199 (330)
+|...+..+++.+|++++|+|++++...++.+++..+...++| +++++||+|+... .+.
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vp-iIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~ 161 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTP-FVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQE 161 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHH
Confidence 9999988889999999999999999999999999999889999 8899999998631 011
Q ss_pred HHHHHHHHHHHHHhcCCCC----------CCccEEEeeccccccCCccccchhhHHHHHHHHhh----hCCC-CCCCCCC
Q 020176 200 LELVEMELRELLSFYKFPG----------DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE----YIPD-PERQLDK 264 (330)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~----------~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~----~~~~-~~~~~~~ 264 (330)
++....++...+...|+.. ..+|++++||+++ .++.+|++.+.. +++. -..+.+.
T Consensus 162 f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tG----------eGi~dLl~~i~~~~~~~l~~~l~~~~~~ 231 (586)
T PRK04004 162 LEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTG----------EGIPDLLMVLAGLAQRYLEERLKIDVEG 231 (586)
T ss_pred HHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCC----------CChHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 1111223334455555433 3689999999986 345555554432 2322 2345678
Q ss_pred CeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc
Q 020176 265 PFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK 320 (330)
Q Consensus 265 ~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~ 320 (330)
|++++|.+++.++|.|+|++|+|.+|+|++||.|.++|... ++.++|++|+.++
T Consensus 232 ~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~--~i~~kVr~l~~~~ 285 (586)
T PRK04004 232 PGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDG--PIVTKVRALLKPR 285 (586)
T ss_pred CeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCC--cceEEEEEEecCc
Confidence 99999999999999999999999999999999999887653 4568999999873
No 52
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.97 E-value=1.1e-29 Score=243.56 Aligned_cols=227 Identities=25% Similarity=0.314 Sum_probs=162.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEE--EEe----------------eeC
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH--VEY----------------ETA 126 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~--~~~----------------~~~ 126 (330)
.+.|+++|++|+|||||+++|++.....+. ..|+|..... ..+ ...
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e----------------~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~ 67 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKRE----------------AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLK 67 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccccc----------------CCceecccCeeEeeeccccccccccccccccccc
Confidence 347999999999999999999853211110 0112221111 111 111
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHH------HH
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEE------LL 200 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~------~~ 200 (330)
...++|||||||++|...+..+++.+|++++|+|++++...++.+++..+...++| +++++||+|+..... ..
T Consensus 68 ~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~~~~~~~~~~f~ 146 (590)
T TIGR00491 68 IPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTP-FVVAANKIDRIPGWRSHEGRPFM 146 (590)
T ss_pred cCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCC-EEEEEECCCccchhhhccCchHH
Confidence 12489999999999999999999999999999999999999999999998888999 889999999974100 00
Q ss_pred -------HHHHH-------HHHHHHHhcCCC----------CCCccEEEeeccccccCCccccchhhHHHHHHHHhhh--
Q 020176 201 -------ELVEM-------ELRELLSFYKFP----------GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY-- 254 (330)
Q Consensus 201 -------~~~~~-------~~~~~~~~~~~~----------~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~-- 254 (330)
+.+.. .+...+...|+. +..+|++|+||+++ +|+++|++++..+
T Consensus 147 e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tG----------eGideLl~~l~~l~~ 216 (590)
T TIGR00491 147 ESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITG----------EGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCC----------CChhHHHHHHHHHHH
Confidence 00111 111123333432 23589999999996 3566666655432
Q ss_pred --CC-CCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc
Q 020176 255 --IP-DPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK 320 (330)
Q Consensus 255 --~~-~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~ 320 (330)
++ ....+.+.|+++.|.+++.++|.|+|+.|+|.+|+|++||.|+++|... ++.++|++|...+
T Consensus 217 ~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~--~i~~kVr~l~~~~ 283 (590)
T TIGR00491 217 QYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDD--VIVTRVRALLKPR 283 (590)
T ss_pred HHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCC--cccEEEEEecCCC
Confidence 22 1223567899999999999999999999999999999999999998653 5679999998765
No 53
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.6e-31 Score=231.47 Aligned_cols=260 Identities=31% Similarity=0.440 Sum_probs=228.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHH---------------HHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAIT---------------KVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK 127 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~---------------~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~ 127 (330)
+.+.++.++||+++||||+-+.|+ +...+.++..+..+|.+|...+|+..|-|+......|+...
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 677899999999999999988763 23445677888889999999999999999999999999999
Q ss_pred eeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCc-------hhhHHHHHHHHHcCCCeEEEEEeeccCcC---hH
Q 020176 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-------PQTKEHILLARQVGVPSLVCFLNKVDLVE---DE 197 (330)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~-------~~~~~~l~~~~~~~~p~iivviNK~D~~~---~~ 197 (330)
++++++|+|||..|..+++.++.+||..++|+++..+.. .|+++|..+++..++.++|+++||||-.. ..
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 999999999999999999999999999999999975432 69999999999999999999999999775 46
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-CCccEEEeeccccccCCcc---ccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEE
Q 020176 198 ELLELVEMELRELLSFYKFPG-DEIPIIRGSATSALQGKNE---EIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDV 273 (330)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~-~~~pv~~~Sa~~~~~g~~~---~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~ 273 (330)
++++++.+++..++..+|++. .+.-++|+|..+|.+..+. ...|+.+..+|+.+.. +|...|..+.|++++|-+-
T Consensus 237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~-l~~~~R~~~GP~~~pI~~K 315 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDE-LPHLERILNGPIRCPVANK 315 (501)
T ss_pred hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCccceehhc-cCcccccCCCCEEeehhhh
Confidence 677888889999999888865 4566899999998776543 3677888899999988 8888999999999999887
Q ss_pred EeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecC
Q 020176 274 FSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVS 329 (330)
Q Consensus 274 ~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g 329 (330)
|. ..|||+.|+|.+|+++.||.+++.|... .+.|.+|......++.+.||
T Consensus 316 yk--dmGTvv~GKvEsGsi~kg~~lvvMPnk~----~veV~~I~~ddvE~~~~~pG 365 (501)
T KOG0459|consen 316 YK--DMGTVVGGKVESGSIKKGQQLVVMPNKT----NVEVLGIYSDDVETDRVAPG 365 (501)
T ss_pred cc--ccceEEEEEecccceecCCeEEEccCCc----ceEEEEEecccceeeeccCC
Confidence 76 4579999999999999999999999776 69999999999899998887
No 54
>PRK12740 elongation factor G; Reviewed
Probab=99.97 E-value=7.9e-29 Score=245.15 Aligned_cols=247 Identities=29% Similarity=0.441 Sum_probs=190.4
Q ss_pred EcCCCCCHHHHHHHHHHHHHh---cCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHHH
Q 020176 71 IGHVDHGKTTLTAAITKVLAE---EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMIT 147 (330)
Q Consensus 71 ~G~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~ 147 (330)
+||+|+|||||+++|+..... .|.... ..+..|....|+++|+|+......+.+.+..++|||||||.+|...+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~-~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~ 79 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVED-GTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVER 79 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccC-CcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHH
Confidence 599999999999999754211 111110 1145688889999999999988888889999999999999999999999
Q ss_pred hhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChH--HHHHHHHHHH------------------
Q 020176 148 GAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE--ELLELVEMEL------------------ 207 (330)
Q Consensus 148 ~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~--~~~~~~~~~~------------------ 207 (330)
++..+|++++|+|++.+...++..++..+...++| +++|+||+|+.... +..+.+.+.+
T Consensus 80 ~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~ 158 (668)
T PRK12740 80 ALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVP-RIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFT 158 (668)
T ss_pred HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCce
Confidence 99999999999999999999999999999889999 77899999987421 1111111100
Q ss_pred -----------------------------------------------HHHHHhc------------------CCCCCCcc
Q 020176 208 -----------------------------------------------RELLSFY------------------KFPGDEIP 222 (330)
Q Consensus 208 -----------------------------------------------~~~~~~~------------------~~~~~~~p 222 (330)
.++++.+ -.....+|
T Consensus 159 ~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~P 238 (668)
T PRK12740 159 GVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVP 238 (668)
T ss_pred EEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 0000000 01123478
Q ss_pred EEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC-----------------CCCCCeEEEEEEEEeeCCCceEEEE
Q 020176 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER-----------------QLDKPFLMPIEDVFSIQGRGTVATG 285 (330)
Q Consensus 223 v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~-----------------~~~~~~~~~i~~~~~~~~~G~v~~g 285 (330)
++++||+++ .|+..||+.+..++|+|.. +.+.|+.++|++++..+++|+++++
T Consensus 239 v~~gSA~~~----------~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~ 308 (668)
T PRK12740 239 VFCGSALKN----------KGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLV 308 (668)
T ss_pred EEeccccCC----------ccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEE
Confidence 999999987 5799999999999998842 3467899999999999999999999
Q ss_pred EEEeeeeecCCEEEEecCCCCCCceEEEEEEEe-CceeecEEecCC
Q 020176 286 RVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEM-FKKILDRGEVSW 330 (330)
Q Consensus 286 ~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~-~~~~~~~a~~g~ 330 (330)
||.+|+|++||.|++.+.+.. +...++..++. ...++++|.||+
T Consensus 309 RV~sG~L~~g~~v~~~~~~~~-~~i~~l~~l~g~~~~~v~~~~aGd 353 (668)
T PRK12740 309 RVYSGTLKKGDTLYNSGTGKK-ERVGRLYRMHGKQREEVDEAVAGD 353 (668)
T ss_pred EEeeeEEcCCCEEEeCCCCCc-EEecceeeecCCCccccCccCCCC
Confidence 999999999999998875542 33445555553 458999999985
No 55
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8.3e-29 Score=220.19 Aligned_cols=250 Identities=26% Similarity=0.417 Sum_probs=194.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH---HHHHhcCccceee---ccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc
Q 020176 65 HVNVGTIGHVDHGKTTLTAAIT---KVLAEEGKAKAIA---FDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~---~~~~~~g~~~~~~---~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (330)
.++.||+-||++|||||...|+ +.....|.....- ....|-...|+++|+++.++...|++.++.++|+|||||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 4689999999999999999986 2333334332221 123466678999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC--hHHHHHHHHHHH---------
Q 020176 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE--DEELLELVEMEL--------- 207 (330)
Q Consensus 139 ~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~--~~~~~~~~~~~~--------- 207 (330)
+||...+++.+..+|.+++|||+..|+++||...++.|+..++| ++-++||+|... +-++.+++++++
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~PitW 170 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPLELLDEIEEELGIQCAPITW 170 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCc-eEEEeeccccccCChHHHHHHHHHHhCcceecccc
Confidence 99999999999999999999999999999999999999999999 989999999875 333344343311
Q ss_pred --------------------------------------------------------HH---HHHhc--------CCCCCC
Q 020176 208 --------------------------------------------------------RE---LLSFY--------KFPGDE 220 (330)
Q Consensus 208 --------------------------------------------------------~~---~~~~~--------~~~~~~ 220 (330)
.+ ++... -+.+..
T Consensus 171 PIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~~ 250 (528)
T COG4108 171 PIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGEL 250 (528)
T ss_pred cccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCCc
Confidence 11 11111 123456
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC---------CCCCC---eEEEEEEEEeeCCCceEEEEEEE
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER---------QLDKP---FLMPIEDVFSIQGRGTVATGRVE 288 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~---------~~~~~---~~~~i~~~~~~~~~G~v~~g~v~ 288 (330)
.|+|+.||..+ .|++.+|+.+..+.|+|.. +.+.. |.|-|+-.+..+++-++.+-||.
T Consensus 251 TPVFFGSAl~N----------FGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~ 320 (528)
T COG4108 251 TPVFFGSALGN----------FGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVC 320 (528)
T ss_pred cceEehhhhhc----------cCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEec
Confidence 89999999987 4799999999999998742 22333 45555555677889999999999
Q ss_pred eeeeecCCEEEEecCCCCCCceEEEEEEEeC----ceeecEEecC
Q 020176 289 QGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEVS 329 (330)
Q Consensus 289 ~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~----~~~~~~a~~g 329 (330)
||.+..|+++....+++ .+++..-+.+ ++.+++|.||
T Consensus 321 SGkferGMkv~h~rtGK----~~~ls~~~~f~A~dRe~ve~A~aG 361 (528)
T COG4108 321 SGKFERGMKVTHVRTGK----DVKLSDALTFMAQDRETVEEAYAG 361 (528)
T ss_pred cccccCCceeeeeecCC----ceEecchHhhhhhhhhhhhhccCC
Confidence 99999999999887776 4666664443 4788888887
No 56
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.96 E-value=1.1e-28 Score=244.38 Aligned_cols=264 Identities=29% Similarity=0.385 Sum_probs=186.7
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEE----eeeCCeeEEEEeCCC
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVE----YETAKRHYAHVDCPG 137 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~----~~~~~~~i~iiDtPG 137 (330)
....+||+++||.++|||||+++|+.......+.........|..+.|+.+|+|+...... +++.+..++||||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 3456899999999999999999998532111111111122467888999999998865433 566778999999999
Q ss_pred chhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh------HHHHHH---HHHHHH
Q 020176 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED------EELLEL---VEMELR 208 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~------~~~~~~---~~~~~~ 208 (330)
|.+|...+..+++.+|++++|+|+.+++..++.+++..+...++| .++++||+|.... ++..+. ....+.
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~ 174 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVK-PVLFINKVDRLINELKLTPQELQERFIKIITEVN 174 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCC-EEEEEEChhcccchhcCCHHHHHHHHhhhhHHHH
Confidence 999999999999999999999999999999999999998888999 5689999998741 111111 111222
Q ss_pred HHHHhcC---------CCCCCccEEEeecccccc---------CCcccc--------chh-------hHHHHHHHHhhhC
Q 020176 209 ELLSFYK---------FPGDEIPIIRGSATSALQ---------GKNEEI--------GKK-------AILKLMDAVDEYI 255 (330)
Q Consensus 209 ~~~~~~~---------~~~~~~pv~~~Sa~~~~~---------g~~~~~--------~~~-------~i~~ll~~l~~~~ 255 (330)
..+.... ....+.++...|++.++. +...+. ..+ -+..|++.+..++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~l 254 (720)
T TIGR00490 175 KLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHL 254 (720)
T ss_pred hhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhC
Confidence 3332210 000011122233333210 000000 001 1467899999999
Q ss_pred CCCCC-------------------------CCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCce
Q 020176 256 PDPER-------------------------QLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLK 310 (330)
Q Consensus 256 ~~~~~-------------------------~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~ 310 (330)
|+|.. +.+.|+.++|++++..++.|++++|||.+|+|++||.|++.+.+. .
T Consensus 255 PsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~----~ 330 (720)
T TIGR00490 255 PSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKA----K 330 (720)
T ss_pred CChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCC----e
Confidence 98841 125689999999999999999999999999999999999987665 5
Q ss_pred EEEEEEEeC----ceeecEEecCC
Q 020176 311 TTVTGVEMF----KKILDRGEVSW 330 (330)
Q Consensus 311 ~~v~si~~~----~~~~~~a~~g~ 330 (330)
.+|..|..+ ..++++|.||+
T Consensus 331 ~kv~~l~~~~g~~~~~v~~a~aGd 354 (720)
T TIGR00490 331 ARIQQVGVYMGPERVEVDEIPAGN 354 (720)
T ss_pred eEeeEEEEeccCCccCccEECCCC
Confidence 888888776 36899999985
No 57
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.1e-28 Score=220.20 Aligned_cols=230 Identities=31% Similarity=0.317 Sum_probs=174.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee-CCeeEEEEeCCCchhh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-AKRHYAHVDCPGHADY 141 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~i~iiDtPG~~~~ 141 (330)
.+.+.|-|+||+++|||||+.+|-+.. .+. ...-|+|.....+.... .+..++|+|||||.-|
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~------VAA----------~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF 214 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSS------VAA----------GEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAF 214 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCc------eeh----------hhcCCccceeceEEEecCCCCEEEEecCCcHHHH
Confidence 345688999999999999999997321 110 01237776665443332 5689999999999999
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHH---HHHHhcCCCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELR---ELLSFYKFPG 218 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~ 218 (330)
..+..++...+|++++||.+.+|+.+||.+.+..++..++| +|+.+||||..... .+.+.+++. -.++.+|
T Consensus 215 ~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~Vp-iVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~G--- 288 (683)
T KOG1145|consen 215 SAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVP-IVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLG--- 288 (683)
T ss_pred HHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCC-EEEEEeccCCCCCC--HHHHHHHHHHcCccHHHcC---
Confidence 99999999999999999999999999999999999999999 98999999987632 111221221 1233443
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhh--CCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY--IPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~--~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~ 296 (330)
.+++++|+||+++ .| ++.|.+++.-+ +..-.-+.+.|+...|.+...++++|.+.+.-|..|+|+.|+
T Consensus 289 GdVQvipiSAl~g---~n-------l~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~ 358 (683)
T KOG1145|consen 289 GDVQVIPISALTG---EN-------LDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGS 358 (683)
T ss_pred CceeEEEeecccC---CC-------hHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEecccccccc
Confidence 5699999999985 44 44444443321 111233467899999999999999999999999999999999
Q ss_pred EEEEecCCCCCCceEEEEEEEeCc-eeecEEecCC
Q 020176 297 EVEVLGLTQGPSLKTTVTGVEMFK-KILDRGEVSW 330 (330)
Q Consensus 297 ~v~~~~~~~~~~~~~~v~si~~~~-~~~~~a~~g~ 330 (330)
.|+.+- . -++|+.+..++ +++++|.|||
T Consensus 359 vlV~G~-~-----w~KVr~l~D~nGk~i~~A~Ps~ 387 (683)
T KOG1145|consen 359 VLVAGK-S-----WCKVRALFDHNGKPIDEATPSQ 387 (683)
T ss_pred EEEEec-h-----hhhhhhhhhcCCCCccccCCCC
Confidence 997652 2 48899977666 6999999986
No 58
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=7.2e-28 Score=221.07 Aligned_cols=226 Identities=31% Similarity=0.378 Sum_probs=173.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC---CeeEEEEeCCCchhh
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA---KRHYAHVDCPGHADY 141 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~---~~~i~iiDtPG~~~~ 141 (330)
.+-|.++||.++|||||+..+-+.....| ..-|+|.....+.+..+ ...++|+|||||+-|
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~----------------EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF 68 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAG----------------EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF 68 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccc----------------cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHH
Confidence 45789999999999999999874221111 12378888777777663 478999999999999
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC----
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP---- 217 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~---- 217 (330)
.....++...+|+++||||+++|+.+||.+.+..++..++| +++++||+|+.+.. .+ .+..-+..+|+.
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~n--p~----~v~~el~~~gl~~E~~ 141 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVP-IVVAINKIDKPEAN--PD----KVKQELQEYGLVPEEW 141 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCC-EEEEEecccCCCCC--HH----HHHHHHHHcCCCHhhc
Confidence 99999999999999999999999999999999999999999 99999999998632 11 222233344543
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC--CCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP--DPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVG 295 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g 295 (330)
+.++.++|+||+++ +|+++||+.+.-... .-..+.+.+.+..|.++...+|.|.++.-.|.+|+|++|
T Consensus 142 gg~v~~VpvSA~tg----------~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~G 211 (509)
T COG0532 142 GGDVIFVPVSAKTG----------EGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKG 211 (509)
T ss_pred CCceEEEEeeccCC----------CCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecC
Confidence 24589999999997 457777766543211 223456788999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCceEEEEEEE-eCceeecEEecC
Q 020176 296 EEVEVLGLTQGPSLKTTVTGVE-MFKKILDRGEVS 329 (330)
Q Consensus 296 ~~v~~~~~~~~~~~~~~v~si~-~~~~~~~~a~~g 329 (330)
|.+.++... .+|+.+. ....+++.|.++
T Consensus 212 D~iv~g~~~------g~I~t~v~~~~~~i~~a~ps 240 (509)
T COG0532 212 DIIVAGGEY------GRVRTMVDDLGKPIKEAGPS 240 (509)
T ss_pred CEEEEccCC------CceEEeehhcCCCccccCCC
Confidence 999876533 3444433 334566666554
No 59
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.96 E-value=1.6e-27 Score=204.65 Aligned_cols=190 Identities=36% Similarity=0.479 Sum_probs=151.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh---------------cCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEE
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAE---------------EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYA 131 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~---------------~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~ 131 (330)
||+++||+++|||||+++|+..... .|.......+.+|....|+++|+|++.....++..+..++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999999743211 1222222223678999999999999999999999999999
Q ss_pred EEeCCCchhhHHHHHHhhhccCeEEEEEeCCC-------CCchhhHHHHHHHHHcCCCeEEEEEeeccCcC---hHHHHH
Q 020176 132 HVDCPGHADYVKNMITGAAQMDGGILVVSAPD-------GPMPQTKEHILLARQVGVPSLVCFLNKVDLVE---DEELLE 201 (330)
Q Consensus 132 iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~-------~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~---~~~~~~ 201 (330)
|||||||.+|...+..++..+|++++|+|+.+ +...++.+++..+...+++++++|+||+|+.. .++..+
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999998 45668888888888888776989999999984 234456
Q ss_pred HHHHHHHHHHHhcCCCCCCccEEEeeccccccCCcc--ccchhhHHHHHHHHhhhCC
Q 020176 202 LVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNE--EIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~--~~~~~~i~~ll~~l~~~~~ 256 (330)
.+.++++++++.+++....+|++++||+++.+-.+. ...|+....|++.|....|
T Consensus 161 ~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~~~~~w~~g~~l~~~l~~~~~ 217 (219)
T cd01883 161 EIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSENMPWYKGPTLLEALDSLEP 217 (219)
T ss_pred HHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCCCCCCCccCCcHHHHHhCCCC
Confidence 677788888888887666799999999997554322 2345556889999887543
No 60
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.96 E-value=1.2e-26 Score=233.02 Aligned_cols=132 Identities=27% Similarity=0.349 Sum_probs=109.9
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee----------------
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET---------------- 125 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~---------------- 125 (330)
....+||+|+||+++|||||+++|+.......+........+|..+.|+++|+|+......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 4567899999999999999999998543211111122233578999999999999876544443
Q ss_pred CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
.+..++|+|||||.+|..++..+++.+|++|+|||+.+|+..++..+|+.+...++| +++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p-~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCC-EEEEEECCccc
Confidence 257789999999999999999999999999999999999999999999999999999 77899999998
No 61
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.95 E-value=3.1e-27 Score=201.23 Aligned_cols=188 Identities=29% Similarity=0.369 Sum_probs=146.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh---------------cCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEE
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAE---------------EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYA 131 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~---------------~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~ 131 (330)
||+++|++|+|||||+++|+..... .++......+.+|..+.|+++|+|++.....++..+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999753210 1111112234578899999999999998888888899999
Q ss_pred EEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh-HHHHHHHHHHHHHH
Q 020176 132 HVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED-EELLELVEMELREL 210 (330)
Q Consensus 132 iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~-~~~~~~~~~~~~~~ 210 (330)
||||||+.+|...+..++..+|++++|+|++++...++.+++.++...+.|++|+|+||+|+... ++..+.+.++++++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 99999999999989889999999999999999988888888888888887768889999999752 33345566678888
Q ss_pred HHhcCCCCCCccEEEeeccccccCCc--cccchhhHHHHHHHHhhhCC
Q 020176 211 LSFYKFPGDEIPIIRGSATSALQGKN--EEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 211 ~~~~~~~~~~~pv~~~Sa~~~~~g~~--~~~~~~~i~~ll~~l~~~~~ 256 (330)
++.+++ ...+++++||+++.+-.+ ....|+..+.|+++|....|
T Consensus 161 ~~~~~~--~~~~ii~iSA~~g~ni~~~~~~~~w~~g~~~~~~~~~~~~ 206 (208)
T cd04166 161 AAKLGI--EDITFIPISALDGDNVVSRSENMPWYSGPTLLEHLETVPI 206 (208)
T ss_pred HHHcCC--CCceEEEEeCCCCCCCccCCCCCCCCCCCcHHHHHhcCCC
Confidence 888775 246799999999744332 23455555788888876433
No 62
>PTZ00416 elongation factor 2; Provisional
Probab=99.95 E-value=4.7e-26 Score=228.39 Aligned_cols=132 Identities=30% Similarity=0.372 Sum_probs=108.8
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC----------CeeEE
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA----------KRHYA 131 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~----------~~~i~ 131 (330)
....+||+++||.++|||||+++|+.......+........+|..+.|+++|+|+......+.+. +..++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 35567999999999999999999986322111111112234789999999999998764444333 56799
Q ss_pred EEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 132 HVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 132 iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
|+|||||.+|..++..+++.+|++|+|+|+.+|+..++..+|..+...++| +|+++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p-~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIR-PVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCC-EEEEEEChhhh
Confidence 999999999999999999999999999999999999999999999999999 77899999997
No 63
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.2e-27 Score=219.93 Aligned_cols=251 Identities=27% Similarity=0.386 Sum_probs=198.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHH---HHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKV---LAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~---~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
.+.++|++.-|-++||||+.++++.. ....+..... ...+|..+.|+.+|+|+......+.+.+.++++||||||.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~-~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG-GATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV 115 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccC-ceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCce
Confidence 45679999999999999999988632 1111211111 2347888999999999999888888889999999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh-----------------------
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED----------------------- 196 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~----------------------- 196 (330)
||..+..++++..|++++|+|+..|++.|+...++.+++.++| .|.++||||....
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiP 194 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVP-RICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIP 194 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCC-eEEEEehhhhcCCChHHHHHHHHhhcCCchheeEcc
Confidence 9999999999999999999999999999999999999999999 5578999998652
Q ss_pred -----------------------------------HHHHHHHHH-----------------------------HHHHHHH
Q 020176 197 -----------------------------------EELLELVEM-----------------------------ELRELLS 212 (330)
Q Consensus 197 -----------------------------------~~~~~~~~~-----------------------------~~~~~~~ 212 (330)
+++.+...+ ++...++
T Consensus 195 ig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIR 274 (721)
T KOG0465|consen 195 IGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIR 274 (721)
T ss_pred ccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHH
Confidence 111111110 1222222
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC---------------------CCCCCeEEEEE
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER---------------------QLDKPFLMPIE 271 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~---------------------~~~~~~~~~i~ 271 (330)
+.-+....+||++.||..+ .|+..||+++..++|+|.. ..+.||....+
T Consensus 275 r~Ti~r~fvPVl~GSAlKN----------kGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAF 344 (721)
T KOG0465|consen 275 RATIKRSFVPVLCGSALKN----------KGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAF 344 (721)
T ss_pred HHHhhcceeeEEechhhcc----------cCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEE
Confidence 2223444689999999986 4799999999999998842 11239999999
Q ss_pred EEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc----eeecEEecCC
Q 020176 272 DVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 272 ~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
+....++ |...+.||.+|+|+.||.|++..+++ +++|..+-+.| ++|+++.||+
T Consensus 345 Kle~g~f-GqLTyvRvYqG~L~kG~~iyN~rtgK----Kvrv~RL~rmHa~~medV~~v~AG~ 402 (721)
T KOG0465|consen 345 KLEEGRF-GQLTYVRVYQGTLSKGDTIYNVRTGK----KVRVGRLVRMHANDMEDVNEVLAGD 402 (721)
T ss_pred EeeecCc-cceEEEEEeeeeecCCcEEEecCCCc----eeEhHHHhHhcccccchhhhhhccc
Confidence 9988888 99999999999999999999887766 68887766666 7899999885
No 64
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.95 E-value=4.1e-26 Score=192.44 Aligned_cols=191 Identities=30% Similarity=0.398 Sum_probs=145.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
.++|+++|++|+|||||+++|+.................+..+.+...|++.......+...+..+.||||||+.+|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 46899999999999999999985311000000011123455667778899888877778888899999999999999999
Q ss_pred HHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC--CCcc
Q 020176 145 MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG--DEIP 222 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p 222 (330)
+..+++.+|++++|+|++++...+...++..+...++| +++|+||+|+.... .+...+++.+++..++... ..+|
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPDAR--PEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999999988777777777777778899 77899999997522 1233445666665554322 2578
Q ss_pred EEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 223 v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
++++||+++.+.........++.+|++.+.+++|.|
T Consensus 159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred EEEeehhccccccccccchhhHHHHHHHHHhcCCCC
Confidence 999999998777666667788999999999999865
No 65
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.94 E-value=7.6e-26 Score=191.96 Aligned_cols=169 Identities=36% Similarity=0.543 Sum_probs=129.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC-------------------
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA------------------- 126 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~------------------- 126 (330)
++|+++||.|+|||||+.+|++. ..+..+.|..++.++......+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~-------------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV-------------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-------------CCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 48999999999999999999632 1344555666677666543333221
Q ss_pred --------C------eeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCC-CchhhHHHHHHHHHcCCCeEEEEEeec
Q 020176 127 --------K------RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-PMPQTKEHILLARQVGVPSLVCFLNKV 191 (330)
Q Consensus 127 --------~------~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~-~~~~~~~~l~~~~~~~~p~iivviNK~ 191 (330)
+ ..++|||||||++|...+..++..+|++++|+|+.++ ...++.+++..+...+++++++|+||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 2 6899999999999999999999999999999999974 567788888888778876688999999
Q ss_pred cCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC
Q 020176 192 DLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER 260 (330)
Q Consensus 192 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~ 260 (330)
|+....+. ....++++++++.+.. ..++++++||+++ +++.+|++++.+.+|.|++
T Consensus 148 Dl~~~~~~-~~~~~~i~~~~~~~~~--~~~~i~~vSA~~g----------~gi~~L~~~l~~~l~~~~~ 203 (203)
T cd01888 148 DLVKEEQA-LENYEQIKKFVKGTIA--ENAPIIPISAQLK----------YNIDVLLEYIVKKIPTPPR 203 (203)
T ss_pred hccCHHHH-HHHHHHHHHHHhcccc--CCCcEEEEeCCCC----------CCHHHHHHHHHHhCCCCCC
Confidence 99874433 2233456666655432 3478999999997 5699999999999887653
No 66
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.94 E-value=8.8e-26 Score=192.66 Aligned_cols=190 Identities=26% Similarity=0.325 Sum_probs=141.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC----------CeeEEEEeC
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA----------KRHYAHVDC 135 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~----------~~~i~iiDt 135 (330)
+||+++||+++|||||+++|+.......+........+|....|+++|+|+......+.+. ...++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 4899999999999999999986432111111112345788999999999998765433332 678999999
Q ss_pred CCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCc------ChHH---HHHHHHHH
Q 020176 136 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV------EDEE---LLELVEME 206 (330)
Q Consensus 136 PG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~------~~~~---~~~~~~~~ 206 (330)
|||.+|...+..+++.+|++++|+|+.++...++.+++..+...++| +++|+||+|+. ++++ .+..+.++
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~ 159 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDRLILELKLSPEEAYQRLARIIEQ 159 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCcchhhhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888998 88999999986 2222 23444456
Q ss_pred HHHHHHhcCCC--------CCCc-c----EEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 207 LRELLSFYKFP--------GDEI-P----IIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 207 ~~~~~~~~~~~--------~~~~-p----v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
+..+++.+... ...+ | |++.||+.++.- ++. ....+..+++.+..++|+|
T Consensus 160 ~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f-~~~-~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 160 VNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGF-TII-KFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred HhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEe-ccc-cccchHHHHHHHHhhCCCC
Confidence 66666665321 0012 5 888999887532 333 2345778999999999875
No 67
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.94 E-value=2.8e-25 Score=222.69 Aligned_cols=213 Identities=27% Similarity=0.317 Sum_probs=159.9
Q ss_pred CHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC------------------eeEEEEeCCCc
Q 020176 77 GKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK------------------RHYAHVDCPGH 138 (330)
Q Consensus 77 GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~------------------~~i~iiDtPG~ 138 (330)
+||||+.+|.+... ......|+|.......+..+. ..++|||||||
T Consensus 473 ~KTtLLD~iR~t~v----------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGh 536 (1049)
T PRK14845 473 HNTTLLDKIRKTRV----------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGH 536 (1049)
T ss_pred ccccHHHHHhCCCc----------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCc
Confidence 39999999984321 122334777776554443321 13899999999
Q ss_pred hhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh-----------------HHHHH
Q 020176 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED-----------------EELLE 201 (330)
Q Consensus 139 ~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~-----------------~~~~~ 201 (330)
++|......++..+|++++|+|+++++..++.+++..+...++| +++|+||+|+... ++..+
T Consensus 537 e~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~ 615 (1049)
T PRK14845 537 EAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALT 615 (1049)
T ss_pred HHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccccchhhhhhhhhhHHHHHH
Confidence 99988888888899999999999999999999999999999999 8899999999641 11122
Q ss_pred HHHHHHHHH---HHhcCCC----------CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC-----CCCCCCC
Q 020176 202 LVEMELREL---LSFYKFP----------GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP-----DPERQLD 263 (330)
Q Consensus 202 ~~~~~~~~~---~~~~~~~----------~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~-----~~~~~~~ 263 (330)
++..++.++ +...|+. +..+|++|+||++| +|+++|++++....+ ....+.+
T Consensus 616 el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tG----------eGId~Ll~~l~~l~~~~l~~~L~~~~~ 685 (1049)
T PRK14845 616 ELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTG----------EGIPELLMMVAGLAQKYLEERLKLNVE 685 (1049)
T ss_pred HHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCC----------CCHHHHHHHHHHhhHHhhhhhhccCCC
Confidence 222222222 3444443 24689999999997 467777777654322 1233457
Q ss_pred CCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEe
Q 020176 264 KPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEM 318 (330)
Q Consensus 264 ~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~ 318 (330)
.|+++.|++++.++|.|+|+.|.|.+|+|++||.|+++|.+. ++-++|++|..
T Consensus 686 ~~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~--~i~~kVRaLl~ 738 (1049)
T PRK14845 686 GYAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDD--VIVTKVRALLK 738 (1049)
T ss_pred CceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCC--cceEEEEEecC
Confidence 899999999999999999999999999999999999988654 56799999974
No 68
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.94 E-value=2e-25 Score=196.32 Aligned_cols=127 Identities=31% Similarity=0.447 Sum_probs=109.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHH---hcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLA---EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
||+++||+|+|||||+++|+.... ..|.... ..+.+|..+.|+++|+|++.....+.+.+.+++||||||+.+|..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~-~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~ 79 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHG-GGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTI 79 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccC-CccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHH
Confidence 689999999999999999975322 1121111 133578889999999999999999999999999999999999999
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
.+..+++.+|++++|+|+.+++..++.+++..+...++| +++++||+|+..
T Consensus 80 ~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~ 130 (270)
T cd01886 80 EVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVP-RIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCCCC
Confidence 999999999999999999999999999999999999999 678999999864
No 69
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.94 E-value=2.1e-25 Score=191.14 Aligned_cols=176 Identities=26% Similarity=0.382 Sum_probs=137.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEE------------------------E
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHV------------------------E 122 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~------------------------~ 122 (330)
+|+++|+.++|||||+++|+....+.|+..... .++++.+|.++|.|...... .
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~--~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 78 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARL--NLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEI 78 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEe--ehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCcccccccee
Confidence 488999999999999999998766666665543 36678888888888653321 1
Q ss_pred eeeCCeeEEEEeCCCchhhHHHHHHhhh--ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHH
Q 020176 123 YETAKRHYAHVDCPGHADYVKNMITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELL 200 (330)
Q Consensus 123 ~~~~~~~i~iiDtPG~~~~~~~~~~~~~--~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~ 200 (330)
++..++.++|+|||||.+|.+.+..++. .+|++++|+|+..+...++.+++..+...++| +++|+||+|+.+..+ .
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~~~~~-~ 156 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDLAPANI-L 156 (224)
T ss_pred eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECccccCHHH-H
Confidence 2334678999999999999999998886 79999999999999999999999999999999 889999999987433 3
Q ss_pred HHHHHHHHHHHHhcCCC---------------------CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 201 ELVEMELRELLSFYKFP---------------------GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 201 ~~~~~~~~~~~~~~~~~---------------------~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
+...+++.+.++..+.. ...+|+|++||.++ +|++.|.+.|.. +|+
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg----------~Gi~~L~~~L~~-lp~ 223 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTG----------EGLDLLHAFLNL-LPL 223 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCc----------cCHHHHHHHHHh-cCC
Confidence 44555676666643322 23469999999997 568888877764 554
No 70
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.94 E-value=6.9e-25 Score=184.68 Aligned_cols=172 Identities=35% Similarity=0.551 Sum_probs=130.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC--------------CeeEE
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA--------------KRHYA 131 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~--------------~~~i~ 131 (330)
+||+++|++|+|||||+++|+.. .. ....+....+..+|+|+......+... +..++
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~------~~---~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEI------AS---TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQIT 71 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhc------cc---hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEE
Confidence 47999999999999999999843 00 123466677888899888765444433 67899
Q ss_pred EEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHH---HHHHHHHHH
Q 020176 132 HVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEEL---LELVEMELR 208 (330)
Q Consensus 132 iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~---~~~~~~~~~ 208 (330)
+|||||+.++...+..+...+|++++|+|+.++...++.+.+..+...+.| +++|+||+|+....+. .+.+.+.+.
T Consensus 72 i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~~~~~~~l~ 150 (192)
T cd01889 72 LVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKK-LIVVLNKIDLIPEEERERKIEKMKKKLQ 150 (192)
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 999999999988888888899999999999998888887777777777887 8899999999864332 222233333
Q ss_pred HHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCC
Q 020176 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPE 259 (330)
Q Consensus 209 ~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~ 259 (330)
..+..++. ..+|++++||+++ .++.+|++.+...+|.|.
T Consensus 151 ~~~~~~~~--~~~~vi~iSa~~g----------~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 151 KTLEKTRF--KNSPIIPVSAKPG----------GGEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHHHhcCc--CCCCEEEEeccCC----------CCHHHHHHHHHhcccccc
Confidence 33333333 3579999999997 569999999999888663
No 71
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.94 E-value=4.8e-25 Score=190.71 Aligned_cols=180 Identities=31% Similarity=0.496 Sum_probs=140.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHH---hcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLA---EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
||+++|++|+|||||+++|+.... ..|+... .....|..+.|+.+|+++......+.+.+.+++||||||+.+|..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~-~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~ 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDK-GTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIA 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccC-CcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHH
Confidence 589999999999999999986422 2222211 123467778899999999999888999999999999999999999
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC--hHHHHHHHHHHH--------------
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE--DEELLELVEMEL-------------- 207 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~--~~~~~~~~~~~~-------------- 207 (330)
.+..+++.+|++++|+|+.++...++..++..+...++| +++++||+|+.. .++..+.+++.+
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P-~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~ 158 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIP-TIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAP 158 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEee
Confidence 999999999999999999999999999999999999999 678999999874 222222222211
Q ss_pred --------------------HHHHHhcC------------------CCCCCccEEEeeccccccCCccccchhhHHHHHH
Q 020176 208 --------------------RELLSFYK------------------FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMD 249 (330)
Q Consensus 208 --------------------~~~~~~~~------------------~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~ 249 (330)
.+++++|- ..+..+|+++.||.++ .|+..||+
T Consensus 159 ~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~----------~Gv~~ll~ 228 (237)
T cd04168 159 NICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKG----------IGIEELLE 228 (237)
T ss_pred eeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCC----------cCHHHHHH
Confidence 11222221 1233589999999987 57999999
Q ss_pred HHhhhCCCC
Q 020176 250 AVDEYIPDP 258 (330)
Q Consensus 250 ~l~~~~~~~ 258 (330)
.+..++|+|
T Consensus 229 ~~~~~~p~~ 237 (237)
T cd04168 229 GITKLFPTS 237 (237)
T ss_pred HHHHhcCCC
Confidence 999999875
No 72
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.93 E-value=2.4e-24 Score=180.37 Aligned_cols=180 Identities=41% Similarity=0.661 Sum_probs=141.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
+|+++|.+|+|||||+|+|++.....+..........+....+..++++.......++.....++||||||+.++...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 48999999999999999999765544443333333455566777788888877777777788999999999999999999
Q ss_pred HhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC---------C
Q 020176 147 TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF---------P 217 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~---------~ 217 (330)
.+++.+|++++|+|+.++...+..+.+..+...+.| +++|+||+|+..+++. +...+++.+.++..+. .
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDRVGEEDL-EEVLREIKELLGLIGFISTKEEGTRN 158 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCCcchhcH-HHHHHHHHHHHccccccchhhhhccc
Confidence 999999999999999988888888888888877888 8899999999874332 3344466666666543 2
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
....|++++||+.+ .++.++++++...+|+|
T Consensus 159 ~~~~~v~~~Sa~~g----------~gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 159 GLLVPIVPGSALTG----------IGVEELLEAIVEHLPPP 189 (189)
T ss_pred CCcceEEEEecccC----------cCHHHHHHHHHhhCCCC
Confidence 34689999999997 46999999999988753
No 73
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.93 E-value=3.3e-24 Score=188.47 Aligned_cols=130 Identities=30% Similarity=0.477 Sum_probs=109.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHH---HhcCccce---eeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKA---IAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~---~~~g~~~~---~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (330)
.+||+++||+|+|||||+++|+... ...|.... ......|..+.|+.+|+++......+++.+..+++|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 4799999999999999999998532 22222110 11224677899999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 139 ~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
.+|...+..+++.+|++++|+|+..+...++..++..+...++| +++++||+|+..
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~ 137 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP-IITFINKLDREG 137 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCC-EEEEEECCccCC
Confidence 99999999999999999999999999888888888888888999 778999999864
No 74
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.92 E-value=5.9e-24 Score=176.80 Aligned_cols=174 Identities=28% Similarity=0.431 Sum_probs=127.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEe-----eeCCeeEEEEeCCCchh
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY-----ETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~-----~~~~~~i~iiDtPG~~~ 140 (330)
+||+++|++|+|||||+++|+......-. ........+....+..+|++........ +.....+.||||||+.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSK-REMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCc-CCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 48999999999999999999864211000 0011223566667778888887655443 33567789999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
|...+..+++.+|++|+|+|++++...++.+.+..+...++| +++|+||+|+..... .... .++.+.+++. .
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~--~~~~---~~~~~~~~~~--~ 151 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLE-IIPVINKIDLPSADP--ERVK---QQIEDVLGLD--P 151 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCC-EEEEEECCCCCcCCH--HHHH---HHHHHHhCCC--c
Confidence 999999999999999999999988777777777777677888 889999999865221 1122 2233333431 2
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
.+++++||+++ .++.++++++...+|.|
T Consensus 152 ~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 152 SEAILVSAKTG----------LGVEDLLEAIVERIPPP 179 (179)
T ss_pred ccEEEeeccCC----------CCHHHHHHHHHhhCCCC
Confidence 45899999997 56999999999888765
No 75
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=8e-26 Score=192.50 Aligned_cols=242 Identities=29% Similarity=0.460 Sum_probs=184.8
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEe------------------
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY------------------ 123 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~------------------ 123 (330)
+...+||+-+||+.+||||++.++.+.. .. +...|-++.+|+...+...
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~------Tv-------rFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s 101 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVH------TV-------RFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRS 101 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccce------EE-------EehhhhhcceeEEeccccceEEecCCCCCCCcchhhc
Confidence 4567899999999999999999986320 00 0111222233333211100
Q ss_pred -----------ee--------CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCC-CCchhhHHHHHHHHHcCCCe
Q 020176 124 -----------ET--------AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD-GPMPQTKEHILLARQVGVPS 183 (330)
Q Consensus 124 -----------~~--------~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~-~~~~~~~~~l~~~~~~~~p~ 183 (330)
+. --+.+.|+|+|||.-++..|+.+....|++++++.+++ .+++|+.||+.....+..++
T Consensus 102 ~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkh 181 (466)
T KOG0466|consen 102 FGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKH 181 (466)
T ss_pred cCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhce
Confidence 00 01457899999999999999999999999999999987 68899999999999999999
Q ss_pred EEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCC
Q 020176 184 LVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLD 263 (330)
Q Consensus 184 iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~ 263 (330)
++++-||+|+..+++..+.. +++..+++... .+..|++|+||.-. ++++.+.+++.+.+|.|.|+..
T Consensus 182 iiilQNKiDli~e~~A~eq~-e~I~kFi~~t~--ae~aPiiPisAQlk----------yNId~v~eyivkkIPvPvRdf~ 248 (466)
T KOG0466|consen 182 IIILQNKIDLIKESQALEQH-EQIQKFIQGTV--AEGAPIIPISAQLK----------YNIDVVCEYIVKKIPVPVRDFT 248 (466)
T ss_pred EEEEechhhhhhHHHHHHHH-HHHHHHHhccc--cCCCceeeehhhhc----------cChHHHHHHHHhcCCCCccccC
Confidence 99999999999865544433 36666666443 36789999999876 4599999999999999999999
Q ss_pred CCeEEEEEEEEeeCC--------CceEEEEEEEeeeeecCCEEEEecCC-----CC----CCceEEEEEEEeCceeecEE
Q 020176 264 KPFLMPIEDVFSIQG--------RGTVATGRVEQGTIKVGEEVEVLGLT-----QG----PSLKTTVTGVEMFKKILDRG 326 (330)
Q Consensus 264 ~~~~~~i~~~~~~~~--------~G~v~~g~v~~G~l~~g~~v~~~~~~-----~~----~~~~~~v~si~~~~~~~~~a 326 (330)
.|.+|.|.++|.++. .|-|..|.+.+|.|++||++.+.|.- .+ .++..+|.|+..-+.+++.|
T Consensus 249 s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~A 328 (466)
T KOG0466|consen 249 SPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFA 328 (466)
T ss_pred CCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhhccceee
Confidence 999999999998754 57899999999999999999987631 22 13445566666666777777
Q ss_pred ecC
Q 020176 327 EVS 329 (330)
Q Consensus 327 ~~g 329 (330)
.+|
T Consensus 329 vPG 331 (466)
T KOG0466|consen 329 VPG 331 (466)
T ss_pred cCC
Confidence 776
No 76
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=1.2e-23 Score=172.04 Aligned_cols=161 Identities=43% Similarity=0.666 Sum_probs=119.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC-CeeEEEEeCCCchhhHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~~~~~~ 145 (330)
+|+++|.+|+|||||+++|++. . .+....+..+++|+......+... +..+.+|||||+++|...+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~------~-------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 68 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI------E-------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNM 68 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc------c-------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHH
Confidence 6899999999999999999832 1 111223344567766655555544 6789999999999999888
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEE
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIR 225 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~ 225 (330)
..+++.+|++++|+|++++...++.+.+..+...+.+++++|+||+|+..... .+...+++.+.++..+. ...|+++
T Consensus 69 ~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~ 145 (164)
T cd04171 69 LAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDW-LELVEEEIRELLAGTFL--ADAPIFP 145 (164)
T ss_pred HhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHH-HHHHHHHHHHHHHhcCc--CCCcEEE
Confidence 88899999999999999887788888777777777734889999999986432 22333455555554322 2478999
Q ss_pred eeccccccCCccccchhhHHHHHHHHhh
Q 020176 226 GSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 226 ~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
+||+++ +++.++++.+..
T Consensus 146 ~Sa~~~----------~~v~~l~~~l~~ 163 (164)
T cd04171 146 VSAVTG----------EGIEELKEYLDE 163 (164)
T ss_pred EeCCCC----------cCHHHHHHHHhh
Confidence 999997 458888877653
No 77
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.91 E-value=5.6e-23 Score=175.81 Aligned_cols=190 Identities=24% Similarity=0.330 Sum_probs=138.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcC---ccceeeccccCCChhhhhcCceEEeEEEEeee-----CCeeEEEEeCCC
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEG---KAKAIAFDEIDKAPEEKKRGITIATAHVEYET-----AKRHYAHVDCPG 137 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g---~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-----~~~~i~iiDtPG 137 (330)
++|+++|++|+|||||+++|+....... .......+..+....|..+|+++......+.. ....+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 4799999999999999999986543222 22222333467788899999998766555432 347899999999
Q ss_pred chhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC------hH---HHHHHHHHHHH
Q 020176 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE------DE---ELLELVEMELR 208 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~------~~---~~~~~~~~~~~ 208 (330)
|.+|...+..++..+|++++|+|+.++...++.+++..+...++| +++|+||+|++. .. +.++.+.+++.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n 159 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDRLILELKLPPNDAYFKLRHIIDEVN 159 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCcccccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877777777777777888 889999999861 12 23344455667
Q ss_pred HHHHhcCCCCC--Ccc----EEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 209 ELLSFYKFPGD--EIP----IIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 209 ~~~~~~~~~~~--~~p----v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
.+++.++.+.. .+| +++.|++.++. .+... ...+.+|++.+...+|.|
T Consensus 160 ~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~-~~~~~-~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 160 NIIASFSTTLSFLFSPENGNVCFASSKFGFC-FTLES-FAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHHhcCCCceEeccCCCeEEEEecCCCeE-EecHH-HHhhhhHHHHHHhhCCCC
Confidence 77777665321 133 77788887543 22222 245678999998888765
No 78
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.90 E-value=3.2e-22 Score=177.01 Aligned_cols=127 Identities=31% Similarity=0.419 Sum_probs=106.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh---cCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAE---EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
||+++|++|+|||||+++|+..... .|... ......+..+.++.+++++......+.+.+..+++|||||+.+|..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~-~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~ 79 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVE-DGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVG 79 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeec-CCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHH
Confidence 5899999999999999999853211 12111 1123457778888999999888888888889999999999999999
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
.+..+++.+|++++|+|++.+...++...+..+...++| +++++||+|+..
T Consensus 80 ~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p-~iivvNK~D~~~ 130 (268)
T cd04170 80 ETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIP-RIIFINKMDRER 130 (268)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECCccCC
Confidence 999999999999999999999999999999998899999 668999999875
No 79
>COG1159 Era GTPase [General function prediction only]
Probab=99.90 E-value=3.6e-22 Score=171.68 Aligned_cols=162 Identities=23% Similarity=0.253 Sum_probs=121.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh---
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--- 140 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--- 140 (330)
+.--|+|+|.||+|||||+|+|+ |...++++.. ..+|......-+..++.+++|+||||..+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~------G~KisIvS~k---------~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~ 69 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALV------GQKISIVSPK---------PQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH 69 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHh------cCceEeecCC---------cchhhhheeEEEEcCCceEEEEeCCCCCCcch
Confidence 44579999999999999999999 6666665432 24444444444667789999999999332
Q ss_pred -----hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 141 -----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 141 -----~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
+.+....++..+|+++||+|+.++....+...+..++..+.| +++++||+|...++..... ....+.....
T Consensus 70 ~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~p-vil~iNKID~~~~~~~l~~---~~~~~~~~~~ 145 (298)
T COG1159 70 ALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTP-VILVVNKIDKVKPKTVLLK---LIAFLKKLLP 145 (298)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCC-eEEEEEccccCCcHHHHHH---HHHHHHhhCC
Confidence 455667778899999999999998888888888888886778 7789999999986542111 2222222222
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
...++|+||+++ .++..|++.+..++|..
T Consensus 146 ----f~~ivpiSA~~g----------~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 146 ----FKEIVPISALKG----------DNVDTLLEIIKEYLPEG 174 (298)
T ss_pred ----cceEEEeecccc----------CCHHHHHHHHHHhCCCC
Confidence 257999999997 45889999999988754
No 80
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.89 E-value=1.8e-22 Score=161.39 Aligned_cols=148 Identities=26% Similarity=0.358 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh----
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY---- 141 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~---- 141 (330)
++|+++|.||+|||||+|+|+ |....... .+|+|+......+...+..+.|+|+||.-++
T Consensus 1 i~ialvG~PNvGKStLfN~Lt------g~~~~v~n----------~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s 64 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALT------GAKQKVGN----------WPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS 64 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHH------TTSEEEEE----------STTSSSEEEEEEEEETTEEEEEEE----SSSSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHH------CCCceecC----------CCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC
Confidence 479999999999999999999 44322221 2489999888888888999999999993221
Q ss_pred --HHHHHHhh--hccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 142 --VKNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 142 --~~~~~~~~--~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
.+....++ ...|++++|+|++. .......+..+..+++| +++|+||+|+...... .-+...+.+.+|
T Consensus 65 ~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P-~vvvlN~~D~a~~~g~----~id~~~Ls~~Lg-- 135 (156)
T PF02421_consen 65 EEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIP-VVVVLNKMDEAERKGI----EIDAEKLSERLG-- 135 (156)
T ss_dssp HHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSS-EEEEEETHHHHHHTTE----EE-HHHHHHHHT--
T ss_pred cHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCC-EEEEEeCHHHHHHcCC----EECHHHHHHHhC--
Confidence 12222333 47999999999976 34556666777889999 8899999998864321 112334444444
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHH
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAV 251 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l 251 (330)
+|++++||+++ +++++|++++
T Consensus 136 ---~pvi~~sa~~~----------~g~~~L~~~I 156 (156)
T PF02421_consen 136 ---VPVIPVSARTG----------EGIDELKDAI 156 (156)
T ss_dssp ---S-EEEEBTTTT----------BTHHHHHHHH
T ss_pred ---CCEEEEEeCCC----------cCHHHHHhhC
Confidence 78999999997 5788888764
No 81
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=9e-22 Score=178.28 Aligned_cols=148 Identities=31% Similarity=0.447 Sum_probs=126.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh---
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--- 140 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--- 140 (330)
..++|+|+|.||+|||||+|+|+ |....+.+.. .|+|.+.....++.+++.+.++||+|..+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~il------geeR~Iv~~~---------aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~k 241 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAIL------GEERVIVSDI---------AGTTRDSIDIEFERDGRKYVLIDTAGIRRKGK 241 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhc------cCceEEecCC---------CCccccceeeeEEECCeEEEEEECCCCCcccc
Confidence 45899999999999999999999 6666665543 49999999999999999999999999433
Q ss_pred -------h-HHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh-HHHHHHHHHHHHHHH
Q 020176 141 -------Y-VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED-EELLELVEMELRELL 211 (330)
Q Consensus 141 -------~-~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~-~~~~~~~~~~~~~~~ 211 (330)
| ...+..++..+|.+++|+|++++...|+.....++...+.+ +++|+||+|+... +...+..+++++..+
T Consensus 242 i~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~-~vIvvNKWDl~~~~~~~~~~~k~~i~~~l 320 (444)
T COG1160 242 ITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRG-IVIVVNKWDLVEEDEATMEEFKKKLRRKL 320 (444)
T ss_pred cccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCC-eEEEEEccccCCchhhHHHHHHHHHHHHh
Confidence 2 23456677889999999999999999999999999999999 7789999999874 355677777888888
Q ss_pred HhcCCCCCCccEEEeecccc
Q 020176 212 SFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 212 ~~~~~~~~~~pv~~~Sa~~~ 231 (330)
..+++ .|++++||+++
T Consensus 321 ~~l~~----a~i~~iSA~~~ 336 (444)
T COG1160 321 PFLDF----APIVFISALTG 336 (444)
T ss_pred ccccC----CeEEEEEecCC
Confidence 88776 89999999986
No 82
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.88 E-value=2.5e-21 Score=159.12 Aligned_cols=159 Identities=37% Similarity=0.456 Sum_probs=112.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee---CCeeEEEEeCCCchhhHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET---AKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~---~~~~i~iiDtPG~~~~~~ 143 (330)
.|+++|++|+|||||+++|++...... ...++|.......+.. .+..+.+|||||+.+|..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 65 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG----------------EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN 65 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccc----------------cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH
Confidence 589999999999999999984311110 1123444443333443 367899999999999988
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC-CCCCCcc
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK-FPGDEIP 222 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p 222 (330)
.+..++..+|++++|+|++++...++.+.+..+...++| +++|+||+|+.... .+.+.+.+..+..... .....++
T Consensus 66 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd01887 66 MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVP-FIVALNKIDKPNAN--PERVKNELSELGLQGEDEWGGDVQ 142 (168)
T ss_pred HHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEEceeccccc--HHHHHHHHHHhhccccccccCcCc
Confidence 888888999999999999988878888888888888999 88999999987532 1222223322221110 1123578
Q ss_pred EEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 223 v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++++||+++ .++.++++++.+.
T Consensus 143 ~~~~Sa~~~----------~gi~~l~~~l~~~ 164 (168)
T cd01887 143 IVPTSAKTG----------EGIDDLLEAILLL 164 (168)
T ss_pred EEEeecccC----------CCHHHHHHHHHHh
Confidence 999999987 4688888888764
No 83
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=1.8e-21 Score=176.39 Aligned_cols=153 Identities=27% Similarity=0.337 Sum_probs=126.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh-----
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD----- 140 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~----- 140 (330)
+.|+|+|.||+|||||.|+|+ |+..+++.+. +|+|.+......++.+..+.+|||+|..+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~------g~r~AIV~D~---------pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~ 68 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT------GRRIAIVSDT---------PGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDE 68 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh------CCeeeEeecC---------CCCccCCccceeEEcCceEEEEECCCCCcCCchH
Confidence 579999999999999999999 7777776554 49999988888888888999999999542
Q ss_pred ----hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 141 ----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 141 ----~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
...++..++..||++|||+|+..|+.+.+.+....++..++| +|+|+||+|-...+ .....+..+|+
T Consensus 69 l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kp-viLvvNK~D~~~~e--------~~~~efyslG~ 139 (444)
T COG1160 69 LQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKP-VILVVNKIDNLKAE--------ELAYEFYSLGF 139 (444)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEEcccCchhh--------hhHHHHHhcCC
Confidence 345567778899999999999999999999999999977788 88999999987432 22223455666
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
-.++++||..+ .|+.+|++++...+|
T Consensus 140 ----g~~~~ISA~Hg----------~Gi~dLld~v~~~l~ 165 (444)
T COG1160 140 ----GEPVPISAEHG----------RGIGDLLDAVLELLP 165 (444)
T ss_pred ----CCceEeehhhc----------cCHHHHHHHHHhhcC
Confidence 56899999987 579999999999886
No 84
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.8e-23 Score=184.98 Aligned_cols=227 Identities=29% Similarity=0.397 Sum_probs=174.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHH---HhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~---~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
.+.+||+|+.|.++||||...+++-.. ...|.... -....|....|+++|+|+......+++.+.++++||||||.
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vdd-gdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDD-GDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCC-CchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence 345799999999999999999986321 11122111 11235667889999999999999999999999999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh-----------------------
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED----------------------- 196 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~----------------------- 196 (330)
+|.-+..+.++..|+++.|+|++.|+++|+...|+....+++| -++++||||....
T Consensus 114 df~leverclrvldgavav~dasagve~qtltvwrqadk~~ip-~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lp 192 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIP-AHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLP 192 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCc-hhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEec
Confidence 9999999999999999999999999999999999999999999 5578999998652
Q ss_pred ------------------------------------------HHHHHHHHHHHH---------------HHHHhc-----
Q 020176 197 ------------------------------------------EELLELVEMELR---------------ELLSFY----- 214 (330)
Q Consensus 197 ------------------------------------------~~~~~~~~~~~~---------------~~~~~~----- 214 (330)
.++.+++.+.-. .+++.+
T Consensus 193 i~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d 272 (753)
T KOG0464|consen 193 IGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFD 272 (753)
T ss_pred ccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhcccc
Confidence 111111111000 111111
Q ss_pred --------------CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC-------CCCCCeEEEEEEE
Q 020176 215 --------------KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER-------QLDKPFLMPIEDV 273 (330)
Q Consensus 215 --------------~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~-------~~~~~~~~~i~~~ 273 (330)
-+...-.|+.+.||.++ .|+..|++++.-++|+|+. +....++...+++
T Consensus 273 ~i~a~elksai~~lt~aq~a~~i~cgsaikn----------kgiqplldavtmylpspeernyeflqwykddlcalafkv 342 (753)
T KOG0464|consen 273 KIDAEELKSAIHELTCAQKAAPILCGSAIKN----------KGIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKV 342 (753)
T ss_pred ccCHHHHHHHHHHHhhhhhhcceehhhhhcc----------cCccchhhhhhhccCChhhcchHHHhhhhhhHHHHhhhh
Confidence 11112378888888875 5789999999999998864 3455666667778
Q ss_pred EeeCCCceEEEEEEEeeeeecCCEEEEe
Q 020176 274 FSIQGRGTVATGRVEQGTIKVGEEVEVL 301 (330)
Q Consensus 274 ~~~~~~G~v~~g~v~~G~l~~g~~v~~~ 301 (330)
..++.+|..++-|+.+|+|+++-.+.+.
T Consensus 343 lhdkqrg~l~fmriysgsi~~~~ai~ni 370 (753)
T KOG0464|consen 343 LHDKQRGPLSFMRIYSGSIHNNLAIFNI 370 (753)
T ss_pred hcccccCceeEEEEecccccCceeeeec
Confidence 8889999999999999999999988755
No 85
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.88 E-value=4.8e-21 Score=169.60 Aligned_cols=157 Identities=19% Similarity=0.173 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh------
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD------ 140 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~------ 140 (330)
+|+++|.+|+|||||+|+|++ ......+. ..++|.......+...+.++.|+||||+.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~------~~~~~vs~---------~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~ 66 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHG------QKISITSP---------KAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLN 66 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhC------CcEeecCC---------CCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHH
Confidence 689999999999999999993 32222211 123443332233334556799999999643
Q ss_pred --hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 141 --YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 141 --~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
+...+..++..+|++++|+|++...... ...+..+...+.| +++|+||+|+...++.. +.+..+.+..++
T Consensus 67 ~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p-~ilV~NK~Dl~~~~~~~----~~~~~~~~~~~~-- 138 (270)
T TIGR00436 67 RLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRP-VVLTRNKLDNKFKDKLL----PLIDKYAILEDF-- 138 (270)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCC-EEEEEECeeCCCHHHHH----HHHHHHHhhcCC--
Confidence 2334456778999999999998865443 4455666677888 88999999998643322 233344333332
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
.+++++||+++ .++++|++++...+|+.
T Consensus 139 --~~v~~iSA~~g----------~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 139 --KDIVPISALTG----------DNTSFLAAFIEVHLPEG 166 (270)
T ss_pred --CceEEEecCCC----------CCHHHHHHHHHHhCCCC
Confidence 37999999997 46899999998888743
No 86
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.7e-21 Score=182.76 Aligned_cols=237 Identities=25% Similarity=0.337 Sum_probs=171.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEe------------------ee
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY------------------ET 125 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~------------------~~ 125 (330)
+.+.++|+||+++|||-|+..|.+.....|... |+|..+....+ ..
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeag----------------gitqqIgAt~fp~~ni~e~tk~~~~~~K~~~ 537 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAG----------------GITQQIGATYFPAENIREKTKELKKDAKKRL 537 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcccccccccc----------------ceeeeccccccchHHHHHHHHHHHhhhhhhc
Confidence 345789999999999999999975443333221 23322211111 01
Q ss_pred CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC------h---
Q 020176 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE------D--- 196 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~------~--- 196 (330)
.--.+.+||||||+.|.....++...||++|+|+|...|+.+|+.+.+.+++..+.| |||++||+|..- .
T Consensus 538 kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktp-FivALNKiDRLYgwk~~p~~~i 616 (1064)
T KOG1144|consen 538 KVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTP-FIVALNKIDRLYGWKSCPNAPI 616 (1064)
T ss_pred CCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCC-eEEeehhhhhhcccccCCCchH
Confidence 123478999999999999999999999999999999999999999999999999999 999999999753 1
Q ss_pred --------HHHHHHHHHHHHHH---HHhcCCC----------CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 197 --------EELLELVEMELREL---LSFYKFP----------GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 197 --------~~~~~~~~~~~~~~---~~~~~~~----------~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
.+...++...+..+ +...|++ +..+.++|+||.+| +|+..|+-+|.++.
T Consensus 617 ~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sG----------eGipdLl~llv~lt 686 (1064)
T KOG1144|consen 617 VEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISG----------EGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccC----------CCcHHHHHHHHHHH
Confidence 11122222222222 1222321 23578999999997 57888887777654
Q ss_pred CCC---CCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCC------------CCceEEEEEEEeCc
Q 020176 256 PDP---ERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQG------------PSLKTTVTGVEMFK 320 (330)
Q Consensus 256 ~~~---~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~------------~~~~~~v~si~~~~ 320 (330)
... .-.....+...|.++..++|.|+.+-..+..|.|+.||.|++.+.+.. +....+|++=..||
T Consensus 687 Qk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hh 766 (1064)
T KOG1144|consen 687 QKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHH 766 (1064)
T ss_pred HHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeeh
Confidence 321 112456788999999999999999999999999999999987765431 13456788888888
Q ss_pred eeecEEe
Q 020176 321 KILDRGE 327 (330)
Q Consensus 321 ~~~~~a~ 327 (330)
+.|..|+
T Consensus 767 kEvkaA~ 773 (1064)
T KOG1144|consen 767 KEVKAAQ 773 (1064)
T ss_pred hHhhhhc
Confidence 7776654
No 87
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1.1e-20 Score=178.56 Aligned_cols=148 Identities=28% Similarity=0.343 Sum_probs=110.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH-
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV- 142 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~- 142 (330)
...+|+++|++|+|||||+|+|++ ...... ....|+|.+.....+...+..+.+|||||+.++.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~------~~~~~~---------~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~ 235 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLG------EERVIV---------SDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGK 235 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHC------CCeeec---------CCCCCceECcEeEEEEECCcEEEEEECCCcccccc
Confidence 457999999999999999999983 222111 1234677776666676777899999999964321
Q ss_pred ----------HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH
Q 020176 143 ----------KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (330)
Q Consensus 143 ----------~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~ 212 (330)
.....+++.+|++++|+|+.++...++.+.+..+...++| +++|+||+|+....+..+.+.+++...+.
T Consensus 236 ~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 314 (429)
T TIGR03594 236 VTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKA-LVIVVNKWDLVKDEKTREEFKKELRRKLP 314 (429)
T ss_pred chhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEECcccCCCHHHHHHHHHHHHHhcc
Confidence 2234567899999999999999999999888888888999 88999999998433334445555555444
Q ss_pred hcCCCCCCccEEEeecccc
Q 020176 213 FYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~ 231 (330)
..+ .+|++++||+++
T Consensus 315 ~~~----~~~vi~~SA~~g 329 (429)
T TIGR03594 315 FLD----FAPIVFISALTG 329 (429)
T ss_pred cCC----CCceEEEeCCCC
Confidence 332 379999999986
No 88
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=5.2e-20 Score=174.09 Aligned_cols=147 Identities=28% Similarity=0.391 Sum_probs=111.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh---
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--- 140 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--- 140 (330)
..++|+++|++|+|||||+|+|++ ...... ....|+|.+.....+...+..+.+|||||+.+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~------~~~~~~---------~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~ 236 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLG------EERVIV---------SDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGK 236 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhC------CCceee---------cCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcc
Confidence 468999999999999999999983 222221 12347888777777777888999999999532
Q ss_pred -------hH-HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH
Q 020176 141 -------YV-KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (330)
Q Consensus 141 -------~~-~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~ 212 (330)
|. ..+..++..+|++|+|+|+.++...++...+..+...+.| +++|+||+|+.+.+ ..+.+.+++...+.
T Consensus 237 ~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~-~ivv~NK~Dl~~~~-~~~~~~~~~~~~l~ 314 (435)
T PRK00093 237 VTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRA-LVIVVNKWDLVDEK-TMEEFKKELRRRLP 314 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCc-EEEEEECccCCCHH-HHHHHHHHHHHhcc
Confidence 21 2345577889999999999999999999988888888999 88999999998543 33445555555554
Q ss_pred hcCCCCCCccEEEeecccc
Q 020176 213 FYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~ 231 (330)
.. ..+|++++||+++
T Consensus 315 ~~----~~~~i~~~SA~~~ 329 (435)
T PRK00093 315 FL----DYAPIVFISALTG 329 (435)
T ss_pred cc----cCCCEEEEeCCCC
Confidence 43 3389999999985
No 89
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=3.3e-20 Score=152.20 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=105.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
.++|+++|++|+|||||+++|......... ....+.........+......+.||||||+++|...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQ--------------GNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccC--------------CCccceEEEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 479999999999999999999742110000 001122222223333333357899999999999888
Q ss_pred HHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
+...++.+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+....+ ...++..++.+..+.
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~---- 140 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQRE---VLFEEACTLAEKNGM---- 140 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECcccccccc---cCHHHHHHHHHHcCC----
Confidence 8888999999999999987543332 334444433 2567 889999999976432 122244555555543
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.+++++||+++ .++.++++.+.+.
T Consensus 141 ~~~~e~Sa~~~----------~~v~~~~~~l~~~ 164 (165)
T cd01864 141 LAVLETSAKES----------QNVEEAFLLMATE 164 (165)
T ss_pred cEEEEEECCCC----------CCHHHHHHHHHHh
Confidence 57899999997 4588888887653
No 90
>PRK15494 era GTPase Era; Provisional
Probab=99.85 E-value=4.8e-20 Score=167.74 Aligned_cols=161 Identities=20% Similarity=0.174 Sum_probs=111.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh--
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD-- 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~-- 140 (330)
.+..+|+++|.+|+|||||+|+|++. .....+ ...++|.......+..++.++.||||||+.+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~------k~~ivs---------~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~ 114 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGE------KLSIVT---------PKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCC------ceeecc---------CCCCCccCcEEEEEEeCCeEEEEEECCCcCCCc
Confidence 45579999999999999999999842 221111 1123444433344556678899999999743
Q ss_pred ------hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 141 ------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 141 ------~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
+.+....++..+|++++|+|+.++.......++..+...+.| .++|+||+|+... . . .++.+.++..
T Consensus 115 ~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p-~IlViNKiDl~~~-~-~----~~~~~~l~~~ 187 (339)
T PRK15494 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIV-PIFLLNKIDIESK-Y-L----NDIKAFLTEN 187 (339)
T ss_pred ccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEEhhcCccc-c-H----HHHHHHHHhc
Confidence 233344557789999999999887776666677777777888 5579999998753 1 1 1333444333
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
. ...+++++||+++ .++.++++++...+|..
T Consensus 188 ~---~~~~i~~iSAktg----------~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 188 H---PDSLLFPISALSG----------KNIDGLLEYITSKAKIS 218 (339)
T ss_pred C---CCcEEEEEeccCc----------cCHHHHHHHHHHhCCCC
Confidence 2 2257999999987 46899999999887743
No 91
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=6.2e-20 Score=165.93 Aligned_cols=135 Identities=28% Similarity=0.382 Sum_probs=110.2
Q ss_pred hcCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEe---------------
Q 020176 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY--------------- 123 (330)
Q Consensus 59 ~~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~--------------- 123 (330)
+.+.+..+|+.++.|+++|||||...|.....-.....+....++|....|+++|+|+....+.+
T Consensus 13 M~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 13 MDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred hccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 34556778999999999999999999985432222223333445788889999999998876544
Q ss_pred -eeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 124 -ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 124 -~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
+..+..+++||.|||.+|..+...+++..|++++|+|..+|+-.|+...++.+....+.++ +++||+|.+
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPv-lv~NK~DRA 163 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPV-LVMNKMDRA 163 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccce-EEeehhhHH
Confidence 2345779999999999999999999999999999999999999999999999888887756 689999964
No 92
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.85 E-value=2.4e-20 Score=153.16 Aligned_cols=161 Identities=19% Similarity=0.179 Sum_probs=103.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
+|+++|++|+|||||+++|++..... ... .. .....|+......+...+..+.+|||||+.+|...+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~---~~~-------~~--~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY---KGL-------PP--SKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc---cCC-------cc--cccCCccccceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 58999999999999999998532110 000 00 0112233333334455678999999999999998888
Q ss_pred HhhhccCeEEEEEeCCCCCc-hhhHHHHHHHH----HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 147 TGAAQMDGGILVVSAPDGPM-PQTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~----~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
..+..+|++++|+|+.+... ......+..+. ..++| +++++||+|+..... .+.+.+.+....+..+ ...+
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~~~-~~~~~~~~~~~~~~~~--~~~~ 144 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDLPDALS-VEEIKEVFQDKAEEIG--RRDC 144 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEccccccCCC-HHHHHHHhcccccccc--CCce
Confidence 88999999999999976422 12222333222 24678 889999999865321 1212222222222222 2347
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
+++++||+++ .++.+++++|..
T Consensus 145 ~~~~~Sa~~g----------~gv~e~~~~l~~ 166 (167)
T cd04160 145 LVLPVSALEG----------TGVREGIEWLVE 166 (167)
T ss_pred EEEEeeCCCC----------cCHHHHHHHHhc
Confidence 8999999997 468888888753
No 93
>PRK00089 era GTPase Era; Reviewed
Probab=99.84 E-value=1.9e-19 Score=161.48 Aligned_cols=161 Identities=25% Similarity=0.283 Sum_probs=109.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh---
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--- 140 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--- 140 (330)
+...|+++|.+|+|||||+|+|++ ......+. ...+|.......+..++.+++|+||||..+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g------~~~~~vs~---------~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~ 68 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVG------QKISIVSP---------KPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR 68 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhC------CceeecCC---------CCCcccccEEEEEEcCCceEEEEECCCCCCchh
Confidence 345799999999999999999983 32222211 112222222222333457899999999643
Q ss_pred -----hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 141 -----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 141 -----~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
+...+...+..+|++++|+|++++........+..+...+.| +++|+||+|+....+. +...+..+.+..+
T Consensus 69 ~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~p-vilVlNKiDl~~~~~~---l~~~~~~l~~~~~ 144 (292)
T PRK00089 69 ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTP-VILVLNKIDLVKDKEE---LLPLLEELSELMD 144 (292)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCC-EEEEEECCcCCCCHHH---HHHHHHHHHhhCC
Confidence 234445567789999999999987666666777777766788 8899999999843222 2223333333333
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
..+++++||+++ .++.+|++.+...+|+
T Consensus 145 ----~~~i~~iSA~~~----------~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 145 ----FAEIVPISALKG----------DNVDELLDVIAKYLPE 172 (292)
T ss_pred ----CCeEEEecCCCC----------CCHHHHHHHHHHhCCC
Confidence 367999999986 4688889888887764
No 94
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=1.1e-19 Score=147.47 Aligned_cols=148 Identities=26% Similarity=0.278 Sum_probs=106.1
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH-----
Q 020176 69 GTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK----- 143 (330)
Q Consensus 69 ~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~----- 143 (330)
+++|++|+|||||+++|++. ..... +...++|...........+..+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~------~~~~~---------~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 65 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGR------RDAIV---------EDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKE 65 (157)
T ss_pred CccCCCCCCHHHHHHHHhCC------cEEee---------cCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHH
Confidence 47999999999999999842 11111 11224454444445556678899999999877433
Q ss_pred ---HHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 144 ---NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 144 ---~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
.+...++.+|++++|+|+.++......+++..+...+.| +++|+||+|+...... ...+...+.
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~--------~~~~~~~~~---- 132 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKP-VILVVNKVDNIKEEDE--------AAEFYSLGF---- 132 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCC-EEEEEECcccCChHHH--------HHHHHhcCC----
Confidence 445667889999999999887777777777777778888 8899999999875322 122333333
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.+++++|++++ .+++++++++.+.
T Consensus 133 ~~~~~~Sa~~~----------~gv~~l~~~l~~~ 156 (157)
T cd01894 133 GEPIPISAEHG----------RGIGDLLDAILEL 156 (157)
T ss_pred CCeEEEecccC----------CCHHHHHHHHHhh
Confidence 36899999987 4688888887754
No 95
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.84 E-value=5.5e-20 Score=152.14 Aligned_cols=157 Identities=22% Similarity=0.199 Sum_probs=104.2
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
....++|+++|++|+|||||+++|.+. .... . ....|... ..+...+..+.+|||||+..+
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~------~~~~----~-----~~t~g~~~----~~~~~~~~~l~l~D~~G~~~~ 71 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGE------DIDT----I-----SPTLGFQI----KTLEYEGYKLNIWDVGGQKTL 71 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccC------CCCC----c-----CCccccce----EEEEECCEEEEEEECCCCHHH
Confidence 345579999999999999999999842 1000 0 00112211 123334678999999999998
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHH----HHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA----RQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~----~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
...+..+++.+|++++|+|+++... .....++..+ ...++| +++|+||+|+.... ..+++.+.++....
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~-----~~~~~~~~~~~~~~ 145 (173)
T cd04154 72 RPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGAT-LLILANKQDLPGAL-----SEEEIREALELDKI 145 (173)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcccccCC-----CHHHHHHHhCcccc
Confidence 8888888999999999999987522 1222233222 124667 88999999997532 11234444443323
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
....++++++||+++ .++.++++++..
T Consensus 146 ~~~~~~~~~~Sa~~g----------~gi~~l~~~l~~ 172 (173)
T cd04154 146 SSHHWRIQPCSAVTG----------EGLLQGIDWLVD 172 (173)
T ss_pred CCCceEEEeccCCCC----------cCHHHHHHHHhc
Confidence 334579999999997 468888888753
No 96
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=1.3e-19 Score=149.17 Aligned_cols=159 Identities=28% Similarity=0.379 Sum_probs=107.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh---
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY--- 141 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~--- 141 (330)
.++|+++|++|+|||||+++|++.. ..... ..++++.......+...+..+.+|||||+.+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 66 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEE------RVIVS---------DIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKV 66 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcc------ceecc---------CCCCCccCceeeEEEECCeeEEEEECCCCccccch
Confidence 4689999999999999999998431 11100 11234444433445556678999999996432
Q ss_pred -------H-HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChH-HHHHHHHHHHHHHHH
Q 020176 142 -------V-KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE-ELLELVEMELRELLS 212 (330)
Q Consensus 142 -------~-~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~-~~~~~~~~~~~~~~~ 212 (330)
. ......+..+|++++|+|+.++...+....+..+...+.| +++++||+|+.... +..+...+.+.+.+.
T Consensus 67 ~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01895 67 EEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWDLVEKDSKTMKEFKKEIRRKLP 145 (174)
T ss_pred hccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCC-EEEEEeccccCCccHHHHHHHHHHHHhhcc
Confidence 1 2234456789999999999988777776777777777888 88999999998642 222333334433332
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
.. ...+++++||+++ +++.++++++..
T Consensus 146 ~~----~~~~~~~~Sa~~~----------~~i~~~~~~l~~ 172 (174)
T cd01895 146 FL----DYAPIVFISALTG----------QGVDKLFDAIDE 172 (174)
T ss_pred cc----cCCceEEEeccCC----------CCHHHHHHHHHH
Confidence 22 2378999999987 458888887765
No 97
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.8e-19 Score=143.36 Aligned_cols=170 Identities=17% Similarity=0.157 Sum_probs=128.8
Q ss_pred hhcCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC
Q 020176 58 TFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (330)
Q Consensus 58 ~~~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (330)
......+..+|+++|..++|||+||++++...+++.....+ |+........++....++.+|||+|
T Consensus 15 ~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATI--------------GiDFlskt~~l~d~~vrLQlWDTAG 80 (221)
T KOG0094|consen 15 TFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATI--------------GIDFLSKTMYLEDRTVRLQLWDTAG 80 (221)
T ss_pred ccCccceEEEEEEEccCccchHHHHHHHHHhhhccccccee--------------eeEEEEEEEEEcCcEEEEEEEeccc
Confidence 33444555899999999999999999999776665554433 4555555556666678899999999
Q ss_pred chhhHHHHHHhhhccCeEEEEEeCCC-CCchhhHHHHHHHHHcC-C--CeEEEEEeeccCcChHHHHHHHHHHHHHHHHh
Q 020176 138 HADYVKNMITGAAQMDGGILVVSAPD-GPMPQTKEHILLARQVG-V--PSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~l~vvda~~-~~~~~~~~~l~~~~~~~-~--p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~ 213 (330)
+++|......+++.+.++|+|+|.++ ....++..++.-++..+ - ..+++|.||.||.+..+. ..++-....+.
T Consensus 81 QERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv---s~eEg~~kAke 157 (221)
T KOG0094|consen 81 QERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV---SIEEGERKAKE 157 (221)
T ss_pred HHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhh---hHHHHHHHHHH
Confidence 99999999999999999999999987 45566777777766553 2 347788999999986433 23344455566
Q ss_pred cCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCC
Q 020176 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPE 259 (330)
Q Consensus 214 ~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~ 259 (330)
++ .-++.+||+.+. ++.+|+..+...+|...
T Consensus 158 l~-----a~f~etsak~g~----------NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 158 LN-----AEFIETSAKAGE----------NVKQLFRRIAAALPGME 188 (221)
T ss_pred hC-----cEEEEecccCCC----------CHHHHHHHHHHhccCcc
Confidence 54 468999999984 48899999988887653
No 98
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.84 E-value=1.1e-19 Score=148.58 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|.+|+|||||++++......... ....+.++......++.....+.+|||||+++|...+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 66 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQ--------------LSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMH 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc--------------CCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhh
Confidence 47999999999999999999843111000 0001122222222333344578899999999999988
Q ss_pred HHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (330)
..+++.+|++++|+|+++....+. .+++..+... ++| +++|+||+|+.... .++..++.+..+ +|
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~~------~~~~~~~~~~~~-----~~ 134 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIP-CIVVANKIDLDPSV------TQKKFNFAEKHN-----LP 134 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEECccCchhH------HHHHHHHHHHcC-----Ce
Confidence 899999999999999987544333 3444555443 677 88999999985321 112233333332 68
Q ss_pred EEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 223 v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++||+++ .++.++++.+...+
T Consensus 135 ~~~~Sa~~~----------~gv~~l~~~l~~~~ 157 (161)
T cd04124 135 LYYVSAADG----------TNVVKLFQDAIKLA 157 (161)
T ss_pred EEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 999999997 45777887776543
No 99
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=1.9e-19 Score=170.08 Aligned_cols=154 Identities=25% Similarity=0.316 Sum_probs=117.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc--------
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH-------- 138 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~-------- 138 (330)
+|+++|.+|+|||||+|+|++ ...+... ...|+|.+.........+..+.+|||||+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~------~~~~~v~---------~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 65 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTG------KRDAIVS---------DTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLD 65 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhC------CCcceec---------CCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHH
Confidence 489999999999999999983 2222211 12367766666666677888999999996
Q ss_pred hhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 139 ~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..+...+..++..+|++++|+|+..+....+.+....++..++| +++|+||+|+...+.. ..+ +..+++
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~p-iilVvNK~D~~~~~~~-------~~~-~~~lg~-- 134 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKP-VILVANKIDGKKEDAV-------AAE-FYSLGF-- 134 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCC-EEEEEECccCCccccc-------HHH-HHhcCC--
Confidence 45566677788899999999999999888888888888888999 8899999998764321 111 234454
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
.+++++||.++ .++.++++.+...++..
T Consensus 135 --~~~~~vSa~~g----------~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 135 --GEPIPISAEHG----------RGIGDLLDAILELLPEE 162 (429)
T ss_pred --CCeEEEeCCcC----------CChHHHHHHHHHhcCcc
Confidence 46899999997 46888999988887643
No 100
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=6.3e-20 Score=147.08 Aligned_cols=165 Identities=19% Similarity=0.221 Sum_probs=120.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
....+|+++|..++|||||+-++....+.... +..-|...-+..........++.||||+|+++|.
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~--------------e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENI--------------EPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYH 68 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCcccccc--------------ccccccEEEEEEEEeCCcEEEEEEEEcCCccccc
Confidence 34679999999999999999998753222211 1112333334444444445778899999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHHcCCCeEEE--EEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQVGVPSLVC--FLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~~~~p~iiv--viNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
.....+++.|+++|+|+|.++... ...+.++..+....-|.+++ |.||+|+.... +.-.++...+.+..|
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R---~V~~~ea~~yAe~~g---- 141 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERR---EVEFEEAQAYAESQG---- 141 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcc---cccHHHHHHHHHhcC----
Confidence 999999999999999999998443 44556667776665565555 88999998732 222346677777766
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCC
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPE 259 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~ 259 (330)
.+++++||+++ .++.+++..|.+.+|...
T Consensus 142 -ll~~ETSAKTg----------~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 142 -LLFFETSAKTG----------ENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred -CEEEEEecccc----------cCHHHHHHHHHHhccCcc
Confidence 57999999998 459999999999888543
No 101
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.83 E-value=1.5e-19 Score=147.84 Aligned_cols=157 Identities=16% Similarity=0.183 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|++|+|||||+++|++...... .....+.+.......++.....+.+|||||++++....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSEN--------------QESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 6899999999999999999984321110 01111333333444455555678999999999998888
Q ss_pred HHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 146 ITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
...++.+|++++|+|+++... .....++..+... ++| +++++||+|+...... -.++...+.+..+ +
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~-----~ 138 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNII-IALVGNKADLESKRQV---STEEAQEYADENG-----L 138 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccCcC---CHHHHHHHHHHcC-----C
Confidence 888889999999999986432 2333444444444 356 8899999998742211 1123344455443 6
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+++++||+++ .++.++++++.+.+
T Consensus 139 ~~~~~Sa~~~----------~~v~~l~~~l~~~l 162 (163)
T cd01860 139 LFFETSAKTG----------ENVNELFTEIAKKL 162 (163)
T ss_pred EEEEEECCCC----------CCHHHHHHHHHHHh
Confidence 7999999987 46888998887765
No 102
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=2.2e-19 Score=170.82 Aligned_cols=147 Identities=19% Similarity=0.282 Sum_probs=104.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch----
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA---- 139 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~---- 139 (330)
..++|+++|.+|+|||||+|+|++. ..... ....|+|.+.....+...+..+.||||||..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~------~~~~~---------s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~ 274 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGE------ERSVV---------DDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVK 274 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC------Ccccc---------cCCCCccCCcceEEEEECCEEEEEEECCCcccccc
Confidence 3589999999999999999999842 11111 1123666665555566677889999999952
Q ss_pred -----hhHHHH--HHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH
Q 020176 140 -----DYVKNM--ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (330)
Q Consensus 140 -----~~~~~~--~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~ 212 (330)
++.... ..+++.+|++++|+|++++...+....+..+...++| +|+|+||+|+...+. ...+.+++.+.+.
T Consensus 275 ~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~p-iIiV~NK~Dl~~~~~-~~~~~~~i~~~l~ 352 (472)
T PRK03003 275 QASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRA-LVLAFNKWDLVDEDR-RYYLEREIDRELA 352 (472)
T ss_pred ccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCChhH-HHHHHHHHHHhcc
Confidence 232222 3456789999999999999888888888888888888 889999999986332 2223334443333
Q ss_pred hcCCCCCCccEEEeecccc
Q 020176 213 FYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~ 231 (330)
.. ...|++++||+++
T Consensus 353 ~~----~~~~~~~~SAk~g 367 (472)
T PRK03003 353 QV----PWAPRVNISAKTG 367 (472)
T ss_pred cC----CCCCEEEEECCCC
Confidence 32 2378999999986
No 103
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.83 E-value=1.7e-19 Score=147.36 Aligned_cols=153 Identities=18% Similarity=0.237 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEE--eEEEEee--eCCeeEEEEeCCCchhh
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIA--TAHVEYE--TAKRHYAHVDCPGHADY 141 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~--~~~~~~~--~~~~~i~iiDtPG~~~~ 141 (330)
++|+++|.+|+|||||+++|++....... .+.+..+ .....+. .....+.||||||+++|
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 64 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDY----------------KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC----------------CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH
Confidence 37999999999999999999843111000 0111111 1222233 33467899999999999
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchhhHH-HHHHHHH--cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQTKE-HILLARQ--VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~~~~-~l~~~~~--~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
...+..+++.+|++++|+|+++....+... ++..+.. .++| +++|+||+|+...... ..++..++.+.++
T Consensus 65 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~v---~~~~~~~~~~~~~--- 137 (162)
T cd04106 65 DAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQAVI---TNEEAEALAKRLQ--- 137 (162)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhcccccCC---CHHHHHHHHHHcC---
Confidence 888888899999999999998743333322 2222222 2678 8899999999763221 1124455555554
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
+|++++||+++ .++.++++++..
T Consensus 138 --~~~~~~Sa~~~----------~~v~~l~~~l~~ 160 (162)
T cd04106 138 --LPLFRTSVKDD----------FNVTELFEYLAE 160 (162)
T ss_pred --CeEEEEECCCC----------CCHHHHHHHHHH
Confidence 58999999986 458888888764
No 104
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.83 E-value=2.4e-19 Score=146.65 Aligned_cols=156 Identities=19% Similarity=0.149 Sum_probs=101.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
..+|+++|.+|+|||||++++++...... . .+.. +. .......++.....+.+|||||+.+|...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~---------~--~~t~---~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTD---------Y--DPTI---ED-SYTKQCEIDGQWAILDILDTAGQEEFSAM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcc---------c--CCCc---cc-eEEEEEEECCEEEEEEEEECCCCcchhHH
Confidence 46999999999999999999985321000 0 0000 00 01111223333356889999999999888
Q ss_pred HHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
+..+++.+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+...... ..++..++.+..+
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~~~~---~~~~~~~~~~~~~---- 138 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFP-MILVGNKADLEHQRKV---SREEGQELARKLK---- 138 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCC-EEEEeeCcccccccee---cHHHHHHHHHHcC----
Confidence 8888999999999999987433222 222222222 3567 8899999999753211 1123444555443
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++++++||+++ .++.++++.+...
T Consensus 139 -~~~~~~Sa~~~----------~~i~~l~~~l~~~ 162 (164)
T cd04145 139 -IPYIETSAKDR----------LNVDKAFHDLVRV 162 (164)
T ss_pred -CcEEEeeCCCC----------CCHHHHHHHHHHh
Confidence 58999999997 4588888887654
No 105
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.83 E-value=1.8e-19 Score=147.88 Aligned_cols=157 Identities=14% Similarity=0.116 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|.+|+|||||+++|++....... ....|.+..............+.+|||||+++|...+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAF--------------VSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 58999999999999999999842111000 0001222222222222233578999999999998888
Q ss_pred HHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 146 ITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
...++.+|++++|+|.++.... ...+++..+... +.| +++|+||+|+...... ..++..++.+.++ +
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~ 138 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDERVV---SSERGRQLADQLG-----F 138 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCC-EEEEEECcccCccccc---CHHHHHHHHHHcC-----C
Confidence 8889999999999999864332 223344444432 355 8899999999764221 1123344445444 5
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+++++||+++ .++.++++.+...+
T Consensus 139 ~~~~~Sa~~~----------~gv~~l~~~l~~~~ 162 (165)
T cd01865 139 EFFEASAKEN----------INVKQVFERLVDII 162 (165)
T ss_pred EEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 7999999987 46888888887654
No 106
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=1.9e-19 Score=152.68 Aligned_cols=158 Identities=16% Similarity=0.137 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee-eCCeeEEEEeCCCchhhHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-TAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~i~iiDtPG~~~~~~~ 144 (330)
++|+++|.+|+|||||+++|++........ ...+.........++ .....+.||||||+++|...
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~--------------~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~ 66 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYK--------------ATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM 66 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------------CceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhh
Confidence 379999999999999999998431110000 000111222233333 33467899999999999888
Q ss_pred HHHhhhccCeEEEEEeCCCCCchhhH-HHHHHHHH-------cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQ-------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~~~~-~~l~~~~~-------~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
+..+++.+|++++|+|.++....+.. .++..+.. .++| +++|+||+|+.... ....+++.++.+..++
T Consensus 67 ~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~ 142 (201)
T cd04107 67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLKKRL---AKDGEQMDQFCKENGF 142 (201)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCc-EEEEEECCCccccc---ccCHHHHHHHHHHcCC
Confidence 88889999999999999874333322 22222221 3567 88999999997421 1123356666666654
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
.+++++||+++ .++.++++++.+.+
T Consensus 143 ----~~~~e~Sak~~----------~~v~e~f~~l~~~l 167 (201)
T cd04107 143 ----IGWFETSAKEG----------INIEEAMRFLVKNI 167 (201)
T ss_pred ----ceEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999996 34666666665544
No 107
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.82 E-value=1.6e-19 Score=147.46 Aligned_cols=156 Identities=14% Similarity=0.144 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
+||+++|++|+|||||+++|++........ ...+.........++.....+.+|||||+.+|....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~ 66 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQ--------------HTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------------CceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhH
Confidence 479999999999999999998432111100 001222222223333334578999999999998888
Q ss_pred HHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
...++.+|++++|+|+++...... ..++..... .++| +++|+||+|+....+ ...++...+.+..+ +
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~---~~~~~~~~~~~~~~-----~ 137 (161)
T cd04113 67 RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDLADQRE---VTFLEASRFAQENG-----L 137 (161)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcchhcc---CCHHHHHHHHHHcC-----C
Confidence 888999999999999988544333 333333332 3667 889999999975321 11224455555543 6
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+++++||+++ .++.++++++.+.
T Consensus 138 ~~~~~Sa~~~----------~~i~~~~~~~~~~ 160 (161)
T cd04113 138 LFLETSALTG----------ENVEEAFLKCARS 160 (161)
T ss_pred EEEEEECCCC----------CCHHHHHHHHHHh
Confidence 7999999997 4688888887653
No 108
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.82 E-value=3.4e-19 Score=146.69 Aligned_cols=153 Identities=22% Similarity=0.250 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCe-eEEEEeCCCchh-----
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKR-HYAHVDCPGHAD----- 140 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~-~i~iiDtPG~~~----- 140 (330)
+|+++|.+|+|||||+|+|.+.....+. ..+.|.......+...+. .+.||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~----------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD----------------YPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC----------------CCccccCCcceEEEcCCCCeEEEEecCcccCccccc
Confidence 6899999999999999999842111000 112333322223334444 899999999632
Q ss_pred --hHHHHHHhhhccCeEEEEEeCCCC-Cch-hhHHHHHHHHHc-----CCCeEEEEEeeccCcChHHHHHHHHHHHHHHH
Q 020176 141 --YVKNMITGAAQMDGGILVVSAPDG-PMP-QTKEHILLARQV-----GVPSLVCFLNKVDLVEDEELLELVEMELRELL 211 (330)
Q Consensus 141 --~~~~~~~~~~~~d~~l~vvda~~~-~~~-~~~~~l~~~~~~-----~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~ 211 (330)
+...+...+..+|++++|+|+++. -.. ....+...+... ++| +++|+||+|+.+.....+ .+..+.
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~----~~~~~~ 140 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKP-RIVVLNKIDLLDEEELFE----LLKELL 140 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccc-cEEEEEchhcCCchhhHH----HHHHHH
Confidence 334444556679999999999875 222 223333334332 566 789999999987543222 233333
Q ss_pred HhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 212 ~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+.. ...+++++||+++ .++.++++++.+.
T Consensus 141 ~~~----~~~~~~~~Sa~~~----------~gi~~l~~~i~~~ 169 (170)
T cd01898 141 KEL----WGKPVFPISALTG----------EGLDELLRKLAEL 169 (170)
T ss_pred hhC----CCCCEEEEecCCC----------CCHHHHHHHHHhh
Confidence 332 2368999999997 4688888887754
No 109
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=2.3e-19 Score=150.84 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|.+|+|||||+++|.......+.... ..+.+.......++.....+.||||||+.+|....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~-------------t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIA-------------TVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCC-------------cccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhh
Confidence 37999999999999999999743211110000 00112222223333334678999999999998888
Q ss_pred HHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
...++.+|++++|+|++.....+ ...++..+... ++| +++|+||+|+...... ..++...+.+.++ +
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~~---~~~~~~~l~~~~~-----~ 138 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERVV---KREDGERLAKEYG-----V 138 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccchhcccc---CHHHHHHHHHHcC-----C
Confidence 88889999999999998743322 23334444433 467 8899999999743211 1123444455544 6
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
|++++||+++ .++.++++++.+.++
T Consensus 139 ~~~e~Sa~~~----------~~v~~l~~~l~~~~~ 163 (191)
T cd04112 139 PFMETSAKTG----------LNVELAFTAVAKELK 163 (191)
T ss_pred eEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 8999999997 458888888877654
No 110
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.82 E-value=5.8e-19 Score=145.08 Aligned_cols=153 Identities=17% Similarity=0.207 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh----
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY---- 141 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~---- 141 (330)
++|+++|++|+|||||+++|++..... ....+.|.......+...+..++||||||+.+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV----------------APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc----------------CCCCCcccceeEEEEccCceEEEEEECCCcCCccccC
Confidence 479999999999999999998431110 001233443333334445678999999997421
Q ss_pred ---H-HHHHHh-hhccCeEEEEEeCCCCCc---hhhHHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHHHHHHHHH
Q 020176 142 ---V-KNMITG-AAQMDGGILVVSAPDGPM---PQTKEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELL 211 (330)
Q Consensus 142 ---~-~~~~~~-~~~~d~~l~vvda~~~~~---~~~~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~ 211 (330)
. ...... ...+|++++|+|+++... ....+++..+... ++| +++|+||+|+.......+ ..++.
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~~~-----~~~~~ 138 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKP-VIVVLNKIDLLTFEDLSE-----IEEEE 138 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCC-eEEEEEccccCchhhHHH-----HHHhh
Confidence 1 111112 234689999999986432 2223444555444 677 889999999986433211 22222
Q ss_pred HhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 212 ~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+. ...+++++||+++ .++.++++++...+
T Consensus 139 ~~-----~~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 167 (168)
T cd01897 139 EL-----EGEEVLKISTLTE----------EGVDEVKNKACELL 167 (168)
T ss_pred hh-----ccCceEEEEeccc----------CCHHHHHHHHHHHh
Confidence 22 2378999999997 56888888887643
No 111
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.82 E-value=1.2e-18 Score=144.89 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=102.4
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch--
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA-- 139 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~-- 139 (330)
+....+|+++|++|+|||||+|+|++... .... ....|.|.....+.++ ..+.+|||||+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~-----~~~~---------~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~ 77 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKK-----LART---------SKTPGRTQLINFFEVN---DGFRLVDLPGYGYA 77 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCC-----cccc---------cCCCCcceEEEEEEeC---CcEEEEeCCCCccc
Confidence 35567999999999999999999984210 0100 0112445444433332 369999999952
Q ss_pred --------hhHHHHHHhhh---ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHH
Q 020176 140 --------DYVKNMITGAA---QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELR 208 (330)
Q Consensus 140 --------~~~~~~~~~~~---~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~ 208 (330)
+|......+++ .+|++++|+|++.+......+.+..+...++| +++++||+|+....+. +...++++
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~i~ 155 (179)
T TIGR03598 78 KVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIP-VLIVLTKADKLKKSEL-NKQLKKIK 155 (179)
T ss_pred cCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHH-HHHHHHHH
Confidence 23333333443 46899999999988888888888888888889 8899999999865433 33445667
Q ss_pred HHHHhcCCCCCCccEEEeecccc
Q 020176 209 ELLSFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 209 ~~~~~~~~~~~~~pv~~~Sa~~~ 231 (330)
+.++..+ ...++|++||+++
T Consensus 156 ~~l~~~~---~~~~v~~~Sa~~g 175 (179)
T TIGR03598 156 KALKKDA---DDPSVQLFSSLKK 175 (179)
T ss_pred HHHhhcc---CCCceEEEECCCC
Confidence 7776653 3368999999996
No 112
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.82 E-value=3.9e-19 Score=146.18 Aligned_cols=157 Identities=17% Similarity=0.123 Sum_probs=103.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
.++|+++|.+|+|||||++++.+........ ...+.........+......+.+|||||+++|...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~--------------~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 68 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFI--------------STIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTI 68 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccc--------------cCccceEEEEEEEECCEEEEEEEEeCCchHHHHHH
Confidence 4799999999999999999998532111100 00122222223333333457899999999998888
Q ss_pred HHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
....++.+|++++|+|+++...... .+++..+.. .+.| +++|.||+|+.+..+. ..++..++.+..+
T Consensus 69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~----- 139 (167)
T cd01867 69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKRVV---SKEEGEALADEYG----- 139 (167)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC---CHHHHHHHHHHcC-----
Confidence 8888899999999999987433222 233333333 2466 8899999999853211 1223444555443
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.|++++||+++ .++.++++++.+.
T Consensus 140 ~~~~~~Sa~~~----------~~v~~~~~~i~~~ 163 (167)
T cd01867 140 IKFLETSAKAN----------INVEEAFFTLAKD 163 (167)
T ss_pred CEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 68999999986 4577777777654
No 113
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.82 E-value=3.3e-19 Score=146.97 Aligned_cols=158 Identities=17% Similarity=0.145 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|++|+|||||+++|++........ ...+.+.......+......+.+|||||++.|....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK--------------ATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcC--------------CccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHH
Confidence 379999999999999999998532111000 000112212222233333567899999999999888
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhHHHH-HH-HHHc------CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTKEHI-LL-ARQV------GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~~~l-~~-~~~~------~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
...++.+|++|+|+|+++....+....| .. .... ++| +++|+||+|+..+... ..+++..+++..+.
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~- 141 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLEEKRQV---STKKAQQWCQSNGN- 141 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCce-EEEEEECccccccccc---CHHHHHHHHHHcCC-
Confidence 8889999999999999875432222212 11 2221 567 8899999999842211 12244455555543
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++...+
T Consensus 142 ---~~~~~~Sa~~~----------~gv~~l~~~i~~~~ 166 (172)
T cd01862 142 ---IPYFETSAKEA----------INVEQAFETIARKA 166 (172)
T ss_pred ---ceEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 78999999997 45777777776543
No 114
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.82 E-value=6.1e-19 Score=145.33 Aligned_cols=157 Identities=15% Similarity=0.071 Sum_probs=103.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
...+|+++|.+|+|||||+++++........ ....|.........++.....+.||||||+++|..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 69 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQL--------------FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS 69 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCc--------------CCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH
Confidence 4579999999999999999999842111100 00112222222333344446788999999999988
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhhH-HHHHHHHH-------cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQ-------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~~-~~l~~~~~-------~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
.+...++.+|++++|+|.++....+.. +++..+.. .++| +++|+||+|+.... ...+++.++++..+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~----~~~~~~~~~~~~~~ 144 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPERQ----VSTEEAQAWCRENG 144 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCc-EEEEEECccccccc----cCHHHHHHHHHHCC
Confidence 888889999999999999875332222 22222211 2467 88999999986421 11234556666654
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
. .+++++||+++ .++.++++.+.+
T Consensus 145 ~----~~~~e~Sa~~~----------~~v~~~~~~~~~ 168 (170)
T cd04116 145 D----YPYFETSAKDA----------TNVAAAFEEAVR 168 (170)
T ss_pred C----CeEEEEECCCC----------CCHHHHHHHHHh
Confidence 3 58999999987 458888887765
No 115
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.82 E-value=4.1e-19 Score=144.91 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=102.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEE--EEeeeCCeeEEEEeCCCchhhHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH--VEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~--~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
+|+++|++|+|||||+++|++..... +...+.+.+... ..++.....+.+|||||+.++...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~ 65 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN----------------QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSL 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc----------------cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 79999999999999999998431111 011123333322 223322356899999999999888
Q ss_pred HHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHH-HcC--CCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPMPQT-KEHILLAR-QVG--VPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~-~~~--~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
+...++.+|++++|+|+++....+. ..++..+. ..+ .| +++++||+|+..... ...++...+.+..+
T Consensus 66 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~~---~~~~~~~~~~~~~~----- 136 (161)
T cd01861 66 IPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKRQ---VSTEEGEKKAKELN----- 136 (161)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEEChhccccCc---cCHHHHHHHHHHhC-----
Confidence 8888999999999999987533222 33333332 333 67 889999999954321 12223344444433
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++++++||+++ .++.++++++.+.
T Consensus 137 ~~~~~~Sa~~~----------~~v~~l~~~i~~~ 160 (161)
T cd01861 137 AMFIETSAKAG----------HNVKELFRKIASA 160 (161)
T ss_pred CEEEEEeCCCC----------CCHHHHHHHHHHh
Confidence 67999999987 4688888888654
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.82 E-value=3.1e-19 Score=145.73 Aligned_cols=154 Identities=19% Similarity=0.273 Sum_probs=99.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
+|+++|.+|+|||||+++|++...... .. ....|.+. ..+...+..+.+|||||+.+|...+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~----~~---------~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~~~ 63 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ----II---------VPTVGFNV----ESFEKGNLSFTAFDMSGQGKYRGLWE 63 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc----ee---------cCccccce----EEEEECCEEEEEEECCCCHhhHHHHH
Confidence 488999999999999999984211000 00 00012222 22345677899999999999998888
Q ss_pred HhhhccCeEEEEEeCCCCCch-hhHHHHHHHH------HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 147 TGAAQMDGGILVVSAPDGPMP-QTKEHILLAR------QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~------~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
.++..+|++++|+|+++.... .....+..+. ..++| +++|+||+|+...... + ++.+.+........
T Consensus 64 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~-~----~~~~~l~~~~~~~~ 137 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDALTA-V----KITQLLGLENIKDK 137 (162)
T ss_pred HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCCCH-H----HHHHHhCCccccCc
Confidence 889999999999999875432 1222333222 13677 8899999999753211 1 22222221111122
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
.++++++||+++ .++++++++|.+
T Consensus 138 ~~~~~~~Sa~~g----------~gv~~~~~~l~~ 161 (162)
T cd04157 138 PWHIFASNALTG----------EGLDEGVQWLQA 161 (162)
T ss_pred eEEEEEeeCCCC----------CchHHHHHHHhc
Confidence 357899999997 468999988754
No 117
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.82 E-value=3.8e-19 Score=146.01 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=102.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
..+|+++|.+|+|||||+++|.+....... ....+.+.......+......+.+|||||+++|...
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 67 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESY--------------ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 67 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------CCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHH
Confidence 368999999999999999999842111000 000122222223333333457899999999999888
Q ss_pred HHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
....++.+|++++|+|+++.... ...+++..+... +.| +++|.||+|+...... ..++...+.+..+
T Consensus 68 ~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~----- 138 (166)
T cd01869 68 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTDKRVV---DYSEAQEFADELG----- 138 (166)
T ss_pred HHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEEChhcccccCC---CHHHHHHHHHHcC-----
Confidence 88888999999999999874322 223333444332 467 8899999998653211 1123444445443
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+|++++||+++ .++.++++.+.+.
T Consensus 139 ~~~~~~Sa~~~----------~~v~~~~~~i~~~ 162 (166)
T cd01869 139 IPFLETSAKNA----------TNVEQAFMTMARE 162 (166)
T ss_pred CeEEEEECCCC----------cCHHHHHHHHHHH
Confidence 68999999997 4577888777654
No 118
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.82 E-value=4.4e-19 Score=145.99 Aligned_cols=158 Identities=16% Similarity=0.108 Sum_probs=104.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
..+|+++|.+|+|||||+++++......... ...|.+.......+......+.+|||||+++|...
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 69 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------------LTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSI 69 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------------CccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 3699999999999999999998421110000 01133333333344444467899999999999888
Q ss_pred HHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
....++.+|++++|+|+++....+. ..++..+... ++| +++|.||+|+...... ..++.+.+....+
T Consensus 70 ~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~---~~~~~~~~~~~~~----- 140 (168)
T cd01866 70 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRREV---SYEEGEAFAKEHG----- 140 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC---CHHHHHHHHHHcC-----
Confidence 8888899999999999986433322 2333334332 567 8899999999743211 1223444555543
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+.+ .++.++++.+...+
T Consensus 141 ~~~~e~Sa~~~----------~~i~~~~~~~~~~~ 165 (168)
T cd01866 141 LIFMETSAKTA----------SNVEEAFINTAKEI 165 (168)
T ss_pred CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999986 35777777766543
No 119
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.82 E-value=5e-19 Score=145.12 Aligned_cols=156 Identities=17% Similarity=0.175 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|.+|+|||||+++|++........ ...+.........+......+.||||||+++|....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~--------------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYL--------------PTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVR 66 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------------CccceeEEEEEEEECCeEEEEEEEECCccHHHHHHH
Confidence 479999999999999999998532111000 001222222233333445678999999999998888
Q ss_pred HHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH--------cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ--------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~--------~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
...++.+|++|+|+|.++....+. ..++..+.. .+.| +++|+||+|+.+.... ..++...+.+..+
T Consensus 67 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~- 141 (168)
T cd04119 67 NEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDLTKHRAV---SEDEGRLWAESKG- 141 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCce-EEEEEEchhccccccc---CHHHHHHHHHHcC-
Confidence 888899999999999987433222 233333332 2345 8899999999742111 1123333444433
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++++++||+++ .++.++++++.+.
T Consensus 142 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~ 165 (168)
T cd04119 142 ----FKYFETSACTG----------EGVNEMFQTLFSS 165 (168)
T ss_pred ----CeEEEEECCCC----------CCHHHHHHHHHHH
Confidence 67999999997 4688888887654
No 120
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.81 E-value=5.6e-19 Score=143.97 Aligned_cols=154 Identities=17% Similarity=0.133 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|.+|+|||||+++|++....... ..+. +... .....++.....+.+|||||+++|...+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~---------~~t~-----~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEY---------DPTI-----EDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCc---------CCcc-----hheE-EEEEEECCEEEEEEEEECCCCcchHHHH
Confidence 58999999999999999999853211000 0000 1111 1112233333457899999999999888
Q ss_pred HHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
..+++.+|++++|+|.++....+. ..++..+.. .++| +++|+||+|+..... ..++..++.+..+
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~----~~~~~~~~~~~~~----- 136 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDLAARTV----SSRQGQDLAKSYG----- 136 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccee----cHHHHHHHHHHhC-----
Confidence 889999999999999986432222 222333322 3567 889999999976321 1223444555443
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++++++||+++ .++.++++++.+.
T Consensus 137 ~~~~~~Sa~~~----------~gi~~l~~~l~~~ 160 (162)
T cd04138 137 IPYIETSAKTR----------QGVEEAFYTLVRE 160 (162)
T ss_pred CeEEEecCCCC----------CCHHHHHHHHHHH
Confidence 57999999997 4588888887653
No 121
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=1.5e-18 Score=165.20 Aligned_cols=156 Identities=24% Similarity=0.258 Sum_probs=113.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch----
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA---- 139 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~---- 139 (330)
..++|+|+|.+|+|||||+|+|++. ..+.. ....|+|.+.........+..+.+|||||+.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~------~~~~v---------~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 101 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGR------REAVV---------EDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAK 101 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCc------Ccccc---------cCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcch
Confidence 3468999999999999999999842 11111 1234677776666666777889999999975
Q ss_pred ----hhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 140 ----DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 140 ----~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
.+...+..++..+|++|+|+|++++......+++..+...++| +++|+||+|+...+. +..++ ...+
T Consensus 102 ~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~p-iilV~NK~Dl~~~~~-------~~~~~-~~~g 172 (472)
T PRK03003 102 GLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKP-VILAANKVDDERGEA-------DAAAL-WSLG 172 (472)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCCccch-------hhHHH-HhcC
Confidence 2445566678899999999999998777777777778778888 889999999865321 11111 1334
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
+. ..+++||+++ .++.+|++.+...++.
T Consensus 173 ~~----~~~~iSA~~g----------~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 173 LG----EPHPVSALHG----------RGVGDLLDAVLAALPE 200 (472)
T ss_pred CC----CeEEEEcCCC----------CCcHHHHHHHHhhccc
Confidence 31 2469999987 4588888888887764
No 122
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=4.1e-19 Score=146.12 Aligned_cols=157 Identities=20% Similarity=0.150 Sum_probs=101.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeE--EEEeeeCCeeEEEEeCCCchh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATA--HVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~--~~~~~~~~~~i~iiDtPG~~~ 140 (330)
+..++|+++|++|+|||||+++|++.....+.. ..++.... ...+......+.+|||||+.+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 68 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQG----------------ATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCC----------------CceeeEEEEEEEEECCEEEEEEEEECCCcHH
Confidence 345799999999999999999998432211110 01111222 222332235678999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
|.......+..+|++++|+|++++...+. ..++..+.. .++| +++|+||+|+....+..... .+.+.+..
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-~i~v~NK~D~~~~~~i~~~~---~~~~~~~~-- 142 (169)
T cd04114 69 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVI-TILVGNKIDLAERREVSQQR---AEEFSDAQ-- 142 (169)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccccCHHH---HHHHHHHc--
Confidence 99988889999999999999987533222 233333332 2566 77899999997543322222 12222221
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
..+++++||+++ .++.++++.+...
T Consensus 143 ---~~~~~~~Sa~~~----------~gv~~l~~~i~~~ 167 (169)
T cd04114 143 ---DMYYLETSAKES----------DNVEKLFLDLACR 167 (169)
T ss_pred ---CCeEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 267999999997 4588888887653
No 123
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.81 E-value=3.9e-19 Score=145.35 Aligned_cols=157 Identities=17% Similarity=0.187 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
+||+++|++|+|||||+++|++....... ....+.........+......+.+|||||+.+|....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQY--------------KSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 47999999999999999999843111000 0011222222223333333578999999999999888
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhHH-HHHHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTKE-HILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~~-~l~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
...++.+|++++|+|+++....+... ++..+.. .++| +++|+||+|+....+. ..+...++.+..+ +
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~~~---~~~~~~~~~~~~~-----~ 137 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQV---SREEAEAFAEEHG-----L 137 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcccccCC---CHHHHHHHHHHcC-----C
Confidence 88899999999999998744433322 3333333 2467 8899999998763211 1123344455544 5
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+++++||+++ .++.++++.+.+.+
T Consensus 138 ~~~e~Sa~~~----------~~i~~l~~~i~~~~ 161 (164)
T smart00175 138 PFFETSAKTN----------TNVEEAFEELAREI 161 (164)
T ss_pred eEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 7999999986 46888888887755
No 124
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.81 E-value=4.3e-19 Score=144.99 Aligned_cols=155 Identities=18% Similarity=0.145 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|.+|+|||||++++........ ...+. + ........++.....+.||||||+++|...+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~---------~~~t~-----~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEK---------YDPTI-----E-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc---------cCCch-----h-hhEEEEEEECCEEEEEEEEECCCccccchHH
Confidence 5899999999999999999984211000 00000 0 0011122233333567899999999998888
Q ss_pred HHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
..+++.+|++++|+|.++..... ...++..+.. .++| +++|+||+|+...... ..++...+.+.++
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~----- 137 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERVV---SREEGQALARQWG----- 137 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccee---cHHHHHHHHHHcC-----
Confidence 88889999999999998743322 2233333332 2567 8899999998753221 1123333444433
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.|++++||+++ .++.++++++.+.
T Consensus 138 ~~~~~~Sa~~~----------~~v~~l~~~l~~~ 161 (163)
T cd04136 138 CPFYETSAKSK----------INVDEVFADLVRQ 161 (163)
T ss_pred CeEEEecCCCC----------CCHHHHHHHHHHh
Confidence 68999999997 4688888887654
No 125
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=2.1e-18 Score=162.89 Aligned_cols=130 Identities=25% Similarity=0.360 Sum_probs=112.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...+||+++.|.++|||||+..|.....-.....+....++|..+.|+.+|+|.....+.+...++.+++||+|||.||.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 45679999999999999999999854322222233334568899999999999999888887788999999999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~ 193 (330)
.+..++.+.+|+++++||+.+|+-.||...++.+-..+.. .++|+||||.
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~-~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLK-PILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCc-eEEEEehhhh
Confidence 9999999999999999999999999999999999888888 6689999993
No 126
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.81 E-value=4.8e-19 Score=145.47 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|+.|+|||||+++|......... ....+.........++.....+.+|||||+++|...+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADC--------------PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------CcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 68999999999999999999842111000 0001222222233333334578999999999999888
Q ss_pred HHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
...++.+|++++|+|+++....+. .+++...... +.| +++|.||+|+....+. ..++..++.+..+ +
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~ 139 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRDV---TYEEAKQFADENG-----L 139 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCc---CHHHHHHHHHHcC-----C
Confidence 888999999999999987433322 2333333332 345 8899999999764321 1224445555443 6
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
+++++||+++ .++.++++.+..
T Consensus 140 ~~~e~Sa~~~----------~~i~e~f~~l~~ 161 (166)
T cd04122 140 LFLECSAKTG----------ENVEDAFLETAK 161 (166)
T ss_pred EEEEEECCCC----------CCHHHHHHHHHH
Confidence 8999999997 457777766654
No 127
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.81 E-value=7e-19 Score=144.84 Aligned_cols=155 Identities=16% Similarity=0.153 Sum_probs=100.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
+.++|+++|.+|+|||||+++|..... .. . ....|.+.. .+......+.+|||||+.+|..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~-----~~-------~---~~t~g~~~~----~~~~~~~~~~l~Dt~G~~~~~~ 68 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQS-----VT-------T---IPTVGFNVE----TVTYKNVKFNVWDVGGQDKIRP 68 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCC-----cc-------c---cCCcccceE----EEEECCEEEEEEECCCCHHHHH
Confidence 457999999999999999999973210 00 0 000122221 2334567899999999999988
Q ss_pred HHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHH----HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPM-PQTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~----~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
.+..+++.+|++++|+|+++... ....+.+.... ..++| +++|.||+|+..... .+++.+.++......
T Consensus 69 ~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-----~~~i~~~~~~~~~~~ 142 (168)
T cd04149 69 LWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL-LLVFANKQDLPDAMK-----PHEIQEKLGLTRIRD 142 (168)
T ss_pred HHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccCCC-----HHHHHHHcCCCccCC
Confidence 88888899999999999987422 22233332222 13567 889999999864211 113333332212222
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
..++++++||+++ .++.+++++|.+
T Consensus 143 ~~~~~~~~SAk~g----------~gv~~~~~~l~~ 167 (168)
T cd04149 143 RNWYVQPSCATSG----------DGLYEGLTWLSS 167 (168)
T ss_pred CcEEEEEeeCCCC----------CChHHHHHHHhc
Confidence 3357899999997 468888888753
No 128
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.81 E-value=4.8e-19 Score=144.97 Aligned_cols=155 Identities=19% Similarity=0.147 Sum_probs=100.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
+|+++|++|+|||||+++|.+....... .... + ........++.....+.+|||||+++|...+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~---------~~t~-----~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDY---------DPTI-----E-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccc---------CCch-----h-hhEEEEEEECCEEEEEEEEECCCcccchHHHH
Confidence 7999999999999999999853211100 0000 0 00111222333345788999999999988888
Q ss_pred HhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 147 TGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
..++.+|++++|+|+++...... ..+...+.. .++| +++|+||+|+...... ..++...+.+..+ .
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~ 137 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVV---STEEGKELARQWG-----C 137 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceE---cHHHHHHHHHHcC-----C
Confidence 88999999999999987433222 222222222 2567 8899999999753211 1123344444443 6
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
|++++||+++ .++.++++++...+
T Consensus 138 ~~~~~Sa~~~----------~~i~~l~~~l~~~~ 161 (164)
T smart00173 138 PFLETSAKER----------VNVDEAFYDLVREI 161 (164)
T ss_pred EEEEeecCCC----------CCHHHHHHHHHHHH
Confidence 8999999997 45888888887654
No 129
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.81 E-value=7.2e-19 Score=144.13 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|.+|+|||||+++|.+....... ....+.+.......++.....+.+|||||+.+|....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDS--------------KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------CCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHH
Confidence 68999999999999999999843111000 0011222222223333333568999999999988888
Q ss_pred HHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
...+..++++++|+|+++....+. .+++..+... ++| +++|+||+|+...... ..++...+.... .+
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~~ 140 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAV---PTEEAKAFAEKN-----GL 140 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccccC---CHHHHHHHHHHc-----CC
Confidence 888899999999999986333222 2333433332 456 8899999998753211 122334444433 26
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+++++||+++ .++.++++.+...
T Consensus 141 ~~~~~Sa~~~----------~~v~~l~~~l~~~ 163 (165)
T cd01868 141 SFIETSALDG----------TNVEEAFKQLLTE 163 (165)
T ss_pred EEEEEECCCC----------CCHHHHHHHHHHH
Confidence 8999999997 4588888887654
No 130
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.81 E-value=8.4e-19 Score=141.98 Aligned_cols=154 Identities=16% Similarity=0.219 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|.+|+|||||+++|.+....... ....+.+........+.....+.+||+||+..+....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENY--------------KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSIT 66 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCcc--------------CCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHH
Confidence 37999999999999999999843221110 0011222333333333344678999999999999988
Q ss_pred HHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 146 ITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
...++.+|++++|+|+++.... ....++..+... +.| +++++||+|+..+.. ...++++++.+.. ..
T Consensus 67 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~-----~~ 137 (159)
T cd00154 67 PSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIP-IILVGNKIDLEDQRQ---VSTEEAQQFAKEN-----GL 137 (159)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEccccccccc---ccHHHHHHHHHHc-----CC
Confidence 9999999999999999873322 223344444443 367 889999999973221 1223455555543 27
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHh
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVD 252 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~ 252 (330)
+++.+||+++ .++.++++++.
T Consensus 138 ~~~~~sa~~~----------~~i~~~~~~i~ 158 (159)
T cd00154 138 LFFETSAKTG----------ENVEELFQSLA 158 (159)
T ss_pred eEEEEecCCC----------CCHHHHHHHHh
Confidence 8999999986 46888888764
No 131
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.81 E-value=8.1e-19 Score=145.99 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=102.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee----------eCCeeEEEE
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE----------TAKRHYAHV 133 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~----------~~~~~i~ii 133 (330)
..++|+++|.+|+|||||++++........... ..+.........+. .....+.||
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~--------------t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFIT--------------TVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLW 68 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCC--------------ccceEEEEEEEEEcCccccccccCCCEEEEEEE
Confidence 347999999999999999999974321111000 00111111112221 123578999
Q ss_pred eCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc----CCCeEEEEEeeccCcChHHHHHHHHHHHH
Q 020176 134 DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV----GVPSLVCFLNKVDLVEDEELLELVEMELR 208 (330)
Q Consensus 134 DtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~----~~p~iivviNK~D~~~~~~~~~~~~~~~~ 208 (330)
||||+++|...+...++.+|++++|+|+++....+. ..++..+... +.| +++|.||+|+.+.... ..++..
T Consensus 69 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~v---~~~~~~ 144 (180)
T cd04127 69 DTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLEDQRQV---SEEQAK 144 (180)
T ss_pred eCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchhcCcc---CHHHHH
Confidence 999999998888888999999999999987433222 2333333332 445 8899999999753211 122445
Q ss_pred HHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 209 ~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++.+.++ +|++++||+++ .++.++++.+.+.
T Consensus 145 ~~~~~~~-----~~~~e~Sak~~----------~~v~~l~~~l~~~ 175 (180)
T cd04127 145 ALADKYG-----IPYFETSAATG----------TNVEKAVERLLDL 175 (180)
T ss_pred HHHHHcC-----CeEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 5566554 68999999997 3577777777653
No 132
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.81 E-value=6.4e-19 Score=143.50 Aligned_cols=152 Identities=19% Similarity=0.184 Sum_probs=98.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
+|+++|++++|||||+++|... .... . ....+.+. ..++..+..+.+|||||+.+|...+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~-----~~~~-------~---~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~~~~ 61 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLG-----EVVT-------T---IPTIGFNV----ETVTYKNLKFQVWDLGGQTSIRPYWR 61 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccC-----CCcC-------c---CCccCcCe----EEEEECCEEEEEEECCCCHHHHHHHH
Confidence 5899999999999999999632 1000 0 00011211 22344567899999999999988888
Q ss_pred HhhhccCeEEEEEeCCCCCch-hhHHHHH-HHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 147 TGAAQMDGGILVVSAPDGPMP-QTKEHIL-LARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~~-~~~~~l~-~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
.++..+|++++|+|+++.... ...+.+. .+.. .++| +++|+||+|+...... . ++.+.+..........
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~-~----~i~~~~~~~~~~~~~~ 135 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAV-LLVFANKQDMPGALSE-A----EISEKLGLSELKDRTW 135 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCCCH-H----HHHHHhCccccCCCcE
Confidence 889999999999999874221 1223332 2221 3567 8899999999753211 1 2222221111122346
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
+++++||+++ .++.++++++.+
T Consensus 136 ~~~~~Sa~~~----------~gi~~l~~~l~~ 157 (158)
T cd04151 136 SIFKTSAIKG----------EGLDEGMDWLVN 157 (158)
T ss_pred EEEEeeccCC----------CCHHHHHHHHhc
Confidence 8999999997 468888888753
No 133
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.81 E-value=4.9e-18 Score=138.65 Aligned_cols=157 Identities=24% Similarity=0.249 Sum_probs=102.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh---
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY--- 141 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~--- 141 (330)
..+|+++|.+|+|||||+|+|++ ........ ....+.......+......+.+|||||..+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 67 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG------QKISIVSP---------KPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK 67 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC------CceEeccC---------CCCceeceEEEEEEcCCeEEEEEECCCCCcchHH
Confidence 46899999999999999999983 22211110 0112222222223344578999999996432
Q ss_pred -----HHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 142 -----VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 142 -----~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
.......+..+|++++|+|+...........+..+...+.| +++|+||+|+....+. +.+....+....
T Consensus 68 ~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~-- 141 (168)
T cd04163 68 LGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTP-VILVLNKIDLVKDKED---LLPLLEKLKELG-- 141 (168)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCC-EEEEEEchhccccHHH---HHHHHHHHHhcc--
Confidence 23345567789999999999887555555666667677788 7899999999843322 222222222222
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
...+++++|++++ .+++++++.|.+.
T Consensus 142 --~~~~~~~~s~~~~----------~~~~~l~~~l~~~ 167 (168)
T cd04163 142 --PFAEIFPISALKG----------ENVDELLEEIVKY 167 (168)
T ss_pred --CCCceEEEEeccC----------CChHHHHHHHHhh
Confidence 2368999999986 4688888887654
No 134
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.81 E-value=7.6e-19 Score=148.43 Aligned_cols=155 Identities=17% Similarity=0.127 Sum_probs=99.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
.|+++|..|+|||||+.++....+..... ...|.........++.....+.||||+|+++|...+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~--------------~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACK--------------SGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCC--------------CcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHH
Confidence 58899999999999999998432111100 0001222222333333346789999999999999899
Q ss_pred HhhhccCeEEEEEeCCCCCchhhH-HHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020176 147 TGAAQMDGGILVVSAPDGPMPQTK-EHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~~~~~-~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (330)
.+++.+|++|+|+|.++....+.. .++..+... ++| +++|.||+|+....+. ..++..++.+... .++
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v---~~~~~~~~a~~~~----~~~ 139 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREI---SRQQGEKFAQQIT----GMR 139 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECccccccccc---CHHHHHHHHHhcC----CCE
Confidence 999999999999999985443333 333434332 466 8899999999753321 1223344444431 267
Q ss_pred EEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 223 v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
++++||+++ .++.++++++..
T Consensus 140 ~~etSAktg----------~gV~e~F~~l~~ 160 (202)
T cd04120 140 FCEASAKDN----------FNVDEIFLKLVD 160 (202)
T ss_pred EEEecCCCC----------CCHHHHHHHHHH
Confidence 999999996 345555555544
No 135
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.81 E-value=9.1e-19 Score=143.68 Aligned_cols=154 Identities=16% Similarity=0.097 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|.+|+|||||++++++.......... .+.+. ............+.+|||||+++|....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t--------------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT--------------IEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQ 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCc--------------chheE-EEEEEECCEEEEEEEEECCCCCcchHHH
Confidence 58999999999999999999853211100000 00111 1112233334678999999999998877
Q ss_pred HHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHH------cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~------~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..+++.+|++++|+|.++..... ...++..+.. .++| +++|.||+|+....+.. .++...+...++
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~--- 139 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHKREVS---SNEGAACATEWN--- 139 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccccccCeec---HHHHHHHHHHhC---
Confidence 77888999999999998754432 3334444433 3567 88999999997532211 112233333332
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
++++++||+++ .++.+++++|.+
T Consensus 140 --~~~~e~SA~~g----------~~v~~~f~~l~~ 162 (165)
T cd04140 140 --CAFMETSAKTN----------HNVQELFQELLN 162 (165)
T ss_pred --CcEEEeecCCC----------CCHHHHHHHHHh
Confidence 67999999997 468888888875
No 136
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.80 E-value=7e-19 Score=143.55 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|++|+|||||+++|+...... ......+.+.......+......+.+|||||+.+|....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP--------------DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc--------------ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 479999999999999999998421100 011112333333333333334678999999999998888
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhH-HHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~-~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
...++.+|++++|+|+++....+.. .++..+.. .+.| +++|+||+|+...... .++..++.+..+
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~~----~~~~~~~~~~~~----- 136 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIV-KMLVGNKIDKENREVT----REEGLKFARKHN----- 136 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCc-EEEEEECCcccccccC----HHHHHHHHHHcC-----
Confidence 8888899999999999874333322 23333332 3566 7899999999843211 123344444433
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++++++||+++ .++.++++.+...
T Consensus 137 ~~~~~~Sa~~~----------~gi~~~~~~~~~~ 160 (161)
T cd01863 137 MLFIETSAKTR----------DGVQQAFEELVEK 160 (161)
T ss_pred CEEEEEecCCC----------CCHHHHHHHHHHh
Confidence 68999999997 4688888877653
No 137
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.80 E-value=9.7e-19 Score=142.66 Aligned_cols=153 Identities=19% Similarity=0.188 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|..|+|||||+++|... .... . .+ ..|... ..+......+.+|||||+.+|...+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~-----~~~~----~---~p---t~g~~~----~~~~~~~~~~~l~D~~G~~~~~~~~ 61 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLG-----EIVT----T---IP---TIGFNV----ETVEYKNISFTVWDVGGQDKIRPLW 61 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----CCcc----c---CC---CCCcce----EEEEECCEEEEEEECCCCHhHHHHH
Confidence 37999999999999999999632 1100 0 00 012221 1233456789999999999998888
Q ss_pred HHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 146 ITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
..+++.+|++++|+|+++... .+..+.+..+.. .+.| +++++||+|+...... + ++.+.+....+....
T Consensus 62 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~i~~~~~~~~~~~~~ 135 (159)
T cd04150 62 RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV-LLVFANKQDLPNAMSA-A----EVTDKLGLHSLRNRN 135 (159)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCCCH-H----HHHHHhCccccCCCC
Confidence 888999999999999986322 222333332221 2456 8899999998653111 1 222222111112234
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
++++++||+++ .|+.+++++|.+
T Consensus 136 ~~~~~~Sak~g----------~gv~~~~~~l~~ 158 (159)
T cd04150 136 WYIQATCATSG----------DGLYEGLDWLSN 158 (159)
T ss_pred EEEEEeeCCCC----------CCHHHHHHHHhc
Confidence 67889999997 568888888753
No 138
>PRK04213 GTP-binding protein; Provisional
Probab=99.80 E-value=3.5e-18 Score=144.82 Aligned_cols=157 Identities=21% Similarity=0.293 Sum_probs=99.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc-----
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH----- 138 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~----- 138 (330)
...+|+++|.+|+|||||+|+|++.... ....+|+|.......+. .+++|||||+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~----------------~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~ 67 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR----------------VGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSG 67 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc----------------cCCCCceeeCceEEeec----ceEEEeCCccccccc
Confidence 3468999999999999999999842111 01123555544333222 6899999993
Q ss_pred ------hhhHHHHHHh----hhccCeEEEEEeCCCCC-----------chhhHHHHHHHHHcCCCeEEEEEeeccCcChH
Q 020176 139 ------ADYVKNMITG----AAQMDGGILVVSAPDGP-----------MPQTKEHILLARQVGVPSLVCFLNKVDLVEDE 197 (330)
Q Consensus 139 ------~~~~~~~~~~----~~~~d~~l~vvda~~~~-----------~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~ 197 (330)
+.+...+..+ +..+|++++|+|+.... ...+.+++..+...++| +++|+||+|+....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 68 VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP-PIVAVNKMDKIKNR 146 (201)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC-eEEEEECccccCcH
Confidence 4444433333 34568999999996521 12345556666677899 78999999997643
Q ss_pred HHHHHHHHHHHHHHHhcCCC----CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 198 ELLELVEMELRELLSFYKFP----GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~----~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
+ +...++.+.++.. ....+++++||+++ + +.+++++|...++..
T Consensus 147 ---~---~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-g----------i~~l~~~l~~~~~~~ 194 (201)
T PRK04213 147 ---D---EVLDEIAERLGLYPPWRQWQDIIAPISAKKG-G----------IEELKEAIRKRLHEA 194 (201)
T ss_pred ---H---HHHHHHHHHhcCCccccccCCcEEEEecccC-C----------HHHHHHHHHHhhcCc
Confidence 1 1222233333321 11247999999985 3 888888888876543
No 139
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.80 E-value=1.1e-18 Score=143.06 Aligned_cols=156 Identities=16% Similarity=0.134 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|.+|+|||||+++++....... ...+ .+.+. .....+......+.||||||+++|...+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~---------~~~t-----~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEK---------YDPT-----IEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcc---------cCCc-----chheE-EEEEEECCEEEEEEEEECCCcccchhHH
Confidence 5899999999999999999974211000 0000 01111 1122233334567899999999999988
Q ss_pred HHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
..+++.+|++++|+|.++....+ ..+++..+.. .++| +++|+||+|+...... ..++..++.+.++
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~----- 137 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVV---GKEQGQNLARQWG----- 137 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcchhccEE---cHHHHHHHHHHhC-----
Confidence 88999999999999987643322 2223333322 3577 8899999999753211 1112334444443
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+|++++||+++ .++.++++++.+.+
T Consensus 138 ~~~~~~Sa~~~----------~~v~~~~~~l~~~l 162 (164)
T cd04175 138 CAFLETSAKAK----------INVNEIFYDLVRQI 162 (164)
T ss_pred CEEEEeeCCCC----------CCHHHHHHHHHHHh
Confidence 68999999997 45888888877543
No 140
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.80 E-value=9.5e-19 Score=147.34 Aligned_cols=161 Identities=15% Similarity=0.118 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
+||+++|.+|+|||||+++|++.....+.. ....|.........+......+.+|||||+.++....
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~-------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPY-------------QNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCc-------------ccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 379999999999999999998532111000 0001222222223333333567799999999887777
Q ss_pred HHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc--CCCeEEEEEeeccCcChHHH-HHHHHHHHHHHHHhcCCCCCCc
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV--GVPSLVCFLNKVDLVEDEEL-LELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~--~~p~iivviNK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
...+..+|++++|+|.++....+ ...++..+... +.| +++|+||+|+...... .+...+++.++.+.++ .
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-----~ 141 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-----A 141 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCC-EEEEEEcccccccccccCccCHHHHHHHHHHcC-----C
Confidence 77788999999999998743322 23344444443 567 8899999998653211 1111124445555443 6
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+++++||+++ .++.++++++.+.+
T Consensus 142 ~~~~~Sa~~~----------~gv~~l~~~i~~~~ 165 (193)
T cd04118 142 QHFETSSKTG----------QNVDELFQKVAEDF 165 (193)
T ss_pred eEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 7999999986 35777777776544
No 141
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.80 E-value=1.6e-18 Score=143.52 Aligned_cols=154 Identities=20% Similarity=0.136 Sum_probs=100.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
..+|+++|++|+|||||+++|+.... .. . ..|.......+......+.+|||||+.+|...
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~-----~~-----~---------~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 75 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEV-----VH-----T---------SPTIGSNVEEIVYKNIRFLMWDIGGQESLRSS 75 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC-----CC-----c---------CCccccceEEEEECCeEEEEEECCCCHHHHHH
Confidence 46899999999999999999974211 00 0 01111122234455778999999999999888
Q ss_pred HHHhhhccCeEEEEEeCCCCCch-hhHHHHHH-HHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPMP-QTKEHILL-ARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~-~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
+..++..+|++++|+|+++.... ...+.+.. +.. .++| +++++||+|+...... + ++.+.+........
T Consensus 76 ~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~~~~-~----~i~~~l~~~~~~~~ 149 (174)
T cd04153 76 WNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGAMTP-A----EISESLGLTSIRDH 149 (174)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCCCCH-H----HHHHHhCcccccCC
Confidence 88889999999999999874321 12222322 222 2467 8899999998752111 1 12222211111123
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
.++++++||+++ .++.+++++|.+
T Consensus 150 ~~~~~~~SA~~g----------~gi~e~~~~l~~ 173 (174)
T cd04153 150 TWHIQGCCALTG----------EGLPEGLDWIAS 173 (174)
T ss_pred ceEEEecccCCC----------CCHHHHHHHHhc
Confidence 468999999997 468888888753
No 142
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.80 E-value=3e-18 Score=138.80 Aligned_cols=146 Identities=25% Similarity=0.279 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH---
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV--- 142 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~--- 142 (330)
.+|+++|++|+|||||+++|++. ...... ...+++.......+...+..+++|||||+.++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGR------DRAIVS---------DIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCC------ceEecc---------CCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchH
Confidence 47999999999999999999832 111110 112455554444555567789999999976542
Q ss_pred -----HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 143 -----KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 143 -----~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
......+..+|++++|+|+++.........+.. ..+.| +++|+||+|+.+..+. . ..
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~-vi~v~nK~D~~~~~~~----------~-----~~ 128 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKP-IIVVLNKSDLLPDSEL----------L-----SL 128 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCC-EEEEEEchhcCCcccc----------c-----cc
Confidence 223456678999999999997554444433333 45667 8899999999874321 1 11
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
....|++++||+++ .++.++++++...
T Consensus 129 ~~~~~~~~~Sa~~~----------~~v~~l~~~l~~~ 155 (157)
T cd04164 129 LAGKPIIAISAKTG----------EGLDELKEALLEL 155 (157)
T ss_pred cCCCceEEEECCCC----------CCHHHHHHHHHHh
Confidence 13478999999986 4688888887764
No 143
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.80 E-value=1.6e-18 Score=146.65 Aligned_cols=159 Identities=17% Similarity=0.132 Sum_probs=103.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
..++|+++|.+|+|||||+++|.+....... ....+.........+......+.||||||++.|..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 70 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSY--------------ITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRT 70 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCc--------------CccccceeEEEEEEECCEEEEEEEEeCCCchhHHH
Confidence 3579999999999999999999842110000 00012222222222223335688999999999988
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
.+..+++.+|++++|+|+++....+ ...++..+... ..| +++|+||+|+...... ..++..++.+..+
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~~~---~~~~~~~~~~~~~----- 141 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVC-KVLVGNKNDDPERKVV---ETEDAYKFAGQMG----- 141 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccccccccc---CHHHHHHHHHHcC-----
Confidence 8888899999999999998743322 23334443332 356 8899999999763221 1224444555443
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++...+
T Consensus 142 ~~~~e~Sa~~~----------~gi~~lf~~l~~~~ 166 (199)
T cd04110 142 ISLFETSAKEN----------INVEEMFNCITELV 166 (199)
T ss_pred CEEEEEECCCC----------cCHHHHHHHHHHHH
Confidence 67999999997 35777777766644
No 144
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.80 E-value=8.3e-19 Score=142.48 Aligned_cols=147 Identities=25% Similarity=0.306 Sum_probs=98.2
Q ss_pred EEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH------
Q 020176 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK------ 143 (330)
Q Consensus 70 v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~------ 143 (330)
++|.+|+|||||+++|++.....+ ..+++|.......+...+..+.+|||||+.++..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVG----------------NWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccccc----------------CCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHH
Confidence 589999999999999984311111 1235566554455555667899999999877542
Q ss_pred HHHHhh--hccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 144 NMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 144 ~~~~~~--~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
.....+ ..+|++++|+|+... ......+..+...++| +++|+||+|+.+...... ....+.+.++ .
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~----~~~~~~~~~~-----~ 132 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLP-VVVALNMIDEAEKRGIKI----DLDKLSELLG-----V 132 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCC-EEEEEehhhhcccccchh----hHHHHHHhhC-----C
Confidence 123333 489999999999863 2233444555667888 889999999976432211 2233334333 6
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
|++++||.++ .++.++++.+...
T Consensus 133 ~~~~iSa~~~----------~~~~~l~~~l~~~ 155 (158)
T cd01879 133 PVVPTSARKG----------EGIDELKDAIAEL 155 (158)
T ss_pred CeEEEEccCC----------CCHHHHHHHHHHH
Confidence 8999999986 3577788777654
No 145
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.80 E-value=1.1e-18 Score=143.48 Aligned_cols=156 Identities=14% Similarity=0.066 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|.+|+|||||+++++........ ....+..........+.....+.+|||||++++....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKY--------------VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC--------------CCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc
Confidence 37999999999999999999842111000 0001122222222222334678999999999887766
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhH-HHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~-~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (330)
...+..+|++|+|+|.++....+.. .++..+... ++| +++|+||+|+.... . ..+..++.+. ..++
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~-~----~~~~~~~~~~-----~~~~ 135 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRK-V----KAKQITFHRK-----KNLQ 135 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhccccc-C----CHHHHHHHHH-----cCCE
Confidence 7778899999999999875443332 233333322 577 88999999997421 1 1122223332 2367
Q ss_pred EEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 223 v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++||+++ +++.+++++|.+.+.
T Consensus 136 ~~e~Sa~~~----------~~v~~~f~~l~~~~~ 159 (166)
T cd00877 136 YYEISAKSN----------YNFEKPFLWLARKLL 159 (166)
T ss_pred EEEEeCCCC----------CChHHHHHHHHHHHH
Confidence 999999997 458888888876553
No 146
>PTZ00369 Ras-like protein; Provisional
Probab=99.80 E-value=1.3e-18 Score=146.15 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=100.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
++.++|+++|.+|+|||||++++........ ...+ .+.+. .....++.....+.||||||+++|.
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~---------~~~t-----~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 67 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDE---------YDPT-----IEDSY-RKQCVIDEETCLLDILDTAGQEEYS 67 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcC---------cCCc-----hhhEE-EEEEEECCEEEEEEEEeCCCCccch
Confidence 3457999999999999999999984211100 0000 01111 1122233344568899999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
..+..+++.+|++++|+|+++....+ ...++..+.. .++| +++|+||+|+....... .++..++.+.++
T Consensus 68 ~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~i~---~~~~~~~~~~~~-- 141 (189)
T PTZ00369 68 AMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVP-MILVGNKCDLDSERQVS---TGEGQELAKSFG-- 141 (189)
T ss_pred hhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccC---HHHHHHHHHHhC--
Confidence 98888999999999999998753322 2233333322 2567 88999999986532111 112333444433
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+|++++||+++ .++.++++++...+
T Consensus 142 ---~~~~e~Sak~~----------~gi~~~~~~l~~~l 166 (189)
T PTZ00369 142 ---IPFLETSAKQR----------VNVDEAFYELVREI 166 (189)
T ss_pred ---CEEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 68999999996 34666666665544
No 147
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.80 E-value=1.8e-18 Score=144.13 Aligned_cols=158 Identities=18% Similarity=0.154 Sum_probs=102.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
+...+|+++|..++|||||+++|... .... . ....|.. ...++..+..+.+|||||+.++.
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~-----~~~~-------~---~pt~g~~----~~~~~~~~~~~~i~D~~Gq~~~~ 75 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLG-----EIVT-------T---IPTIGFN----VETVEYKNISFTVWDVGGQDKIR 75 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccC-----CCcc-------c---cCCccee----EEEEEECCEEEEEEECCCCHHHH
Confidence 34579999999999999999999631 1000 0 0001222 12344567889999999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHH----HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~----~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
..+..+++.+|++|+|+|+++.... .....+.... ..++| +++|+||+|+....+ .+++.+.+....+.
T Consensus 76 ~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~~~-----~~~~~~~l~l~~~~ 149 (181)
T PLN00223 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-----AAEITDKLGLHSLR 149 (181)
T ss_pred HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCCCC-----HHHHHHHhCccccC
Confidence 8888899999999999999874321 2222222221 12566 889999999875321 11233322221121
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
...+.++++||+++ +|+.+++++|...+
T Consensus 150 ~~~~~~~~~Sa~~g----------~gv~e~~~~l~~~~ 177 (181)
T PLN00223 150 QRHWYIQSTCATSG----------EGLYEGLDWLSNNI 177 (181)
T ss_pred CCceEEEeccCCCC----------CCHHHHHHHHHHHH
Confidence 23356778999997 56888888887654
No 148
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.80 E-value=1.6e-18 Score=142.98 Aligned_cols=159 Identities=18% Similarity=0.113 Sum_probs=101.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
+|+++|..|+|||||++++.+......... ..+.........+......+.||||||+++|.....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~--------------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKA--------------TIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCC--------------ceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHH
Confidence 689999999999999999985321110000 001122222222333346789999999999988888
Q ss_pred HhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHHcC---CCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020176 147 TGAAQMDGGILVVSAPDGPM-PQTKEHILLARQVG---VPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~~~---~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (330)
..++.+|++++|+|+++... ....+++..+.... .+++++|.||+|+.+..+. ....++...+.+.++ .+
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~-~~~~~~~~~~~~~~~-----~~ 141 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQY-ALMEQDAIKLAAEMQ-----AE 141 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccc-cccHHHHHHHHHHcC-----Ce
Confidence 88999999999999977322 22334444433322 2338899999998653221 112233444445443 57
Q ss_pred EEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 223 v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++||+++ .++.++++.+.+..
T Consensus 142 ~~e~Sa~~g----------~~v~~lf~~l~~~~ 164 (170)
T cd04108 142 YWSVSALSG----------ENVREFFFRVAALT 164 (170)
T ss_pred EEEEECCCC----------CCHHHHHHHHHHHH
Confidence 999999986 35777777776543
No 149
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.80 E-value=2.9e-18 Score=141.43 Aligned_cols=160 Identities=18% Similarity=0.158 Sum_probs=101.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH-
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK- 143 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~- 143 (330)
.++|+++|++|+|||||+++++........ ....+.........++.....+.+|||||+++|..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 67 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERT--------------EATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKS 67 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCcc--------------ccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHh
Confidence 468999999999999999999842111000 00011222222233333446789999999998874
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhhH-HHHHHHHHc----CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQV----GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~~-~~l~~~~~~----~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
....+++.+|++++|+|+++....+.. .++..+... ++| +++|+||+|+....... .++..++.+...
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 140 (170)
T cd04115 68 MVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVP-RILVGNKCDLREQIQVP---TDLAQRFADAHS--- 140 (170)
T ss_pred hHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCC-EEEEEECccchhhcCCC---HHHHHHHHHHcC---
Confidence 456677899999999999875444333 333344432 467 88999999987532211 123334444432
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++++++||+++.++. ++.+++..+...
T Consensus 141 --~~~~e~Sa~~~~~~~-------~i~~~f~~l~~~ 167 (170)
T cd04115 141 --MPLFETSAKDPSEND-------HVEAIFMTLAHK 167 (170)
T ss_pred --CcEEEEeccCCcCCC-------CHHHHHHHHHHH
Confidence 789999999854333 366666666543
No 150
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.80 E-value=1.2e-18 Score=141.76 Aligned_cols=152 Identities=23% Similarity=0.204 Sum_probs=99.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
+|+++|.+|+|||||++++++... ... ....+.+. ..+......+.+|||||+..+.....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~------~~~---------~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV------VTT---------IPTIGFNV----ETVEYKNVSFTVWDVGGQDKIRPLWK 61 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC------CCC---------CCCcCcce----EEEEECCEEEEEEECCCChhhHHHHH
Confidence 589999999999999999984320 000 00012222 22344567899999999999988888
Q ss_pred HhhhccCeEEEEEeCCCCCc-hhhHHHHHHHH----HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 147 TGAAQMDGGILVVSAPDGPM-PQTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~----~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
..+..+|++++|+|++.... ......+.... ..+.| +++|+||+|+..... .+ ++.+.+.........+
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~~----~~~~~~~~~~~~~~~~ 135 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVP-LLIFANKQDLPGALS-VS----ELIEKLGLEKILGRRW 135 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEeeccCCccccC-HH----HHHHhhChhhccCCcE
Confidence 88899999999999987421 22233333222 23677 889999999986331 12 2222222211122457
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
|++++||+++ .++.+++++|..
T Consensus 136 ~~~~~Sa~~~----------~gv~~~~~~l~~ 157 (158)
T cd00878 136 HIQPCSAVTG----------DGLDEGLDWLLQ 157 (158)
T ss_pred EEEEeeCCCC----------CCHHHHHHHHhh
Confidence 9999999997 458888887754
No 151
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.79 E-value=1.7e-18 Score=143.54 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=101.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
..++|+++|..|+|||||+++|.. |.... .. ...|... ..+......+.+|||||+.++..
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~-----~~~~~-------~~---~t~~~~~----~~~~~~~~~l~l~D~~G~~~~~~ 72 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKL-----GESVT-------TI---PTIGFNV----ETVTYKNISFTVWDVGGQDKIRP 72 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhc-----CCCCC-------cC---Cccccce----EEEEECCEEEEEEECCCChhhHH
Confidence 357999999999999999999963 11100 00 0011111 12334567899999999999998
Q ss_pred HHHHhhhccCeEEEEEeCCCCC-chhhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~-~~~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
.+..+++.+|++|+|+|+++.. .....+.+..+.. .++| +++|+||+|+...... + ++.+.+.......
T Consensus 73 ~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~i~~~~~~~~~~~ 146 (175)
T smart00177 73 LWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV-ILVFANKQDLPDAMKA-A----EITEKLGLHSIRD 146 (175)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccCCCH-H----HHHHHhCccccCC
Confidence 8888899999999999998642 2233344433321 2466 8899999998753211 1 2222222111222
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
..+.++++||+++ .++.+++++|.+.+
T Consensus 147 ~~~~~~~~Sa~~g----------~gv~e~~~~l~~~~ 173 (175)
T smart00177 147 RNWYIQPTCATSG----------DGLYEGLTWLSNNL 173 (175)
T ss_pred CcEEEEEeeCCCC----------CCHHHHHHHHHHHh
Confidence 3456789999997 46888888887643
No 152
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=5e-18 Score=160.60 Aligned_cols=153 Identities=25% Similarity=0.271 Sum_probs=110.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh-----
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD----- 140 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~----- 140 (330)
++|+++|.+|+|||||+|+|++ ...+... ...|+|.+.........+..+.+|||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~------~~~~~v~---------~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~ 66 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTG------KRDAIVA---------DTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGF 66 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhC------CCceeeC---------CCCCCcccceEEEEEECCcEEEEEECCCCCCcchhH
Confidence 4799999999999999999983 2222111 1235666555555666678899999999877
Q ss_pred ---hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 141 ---YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 141 ---~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
+......++..+|++++|+|+.++......+....++..++| +++|+||+|+...++ ...++ ..+++
T Consensus 67 ~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~D~~~~~~-------~~~~~-~~lg~- 136 (435)
T PRK00093 67 EKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKP-VILVVNKVDGPDEEA-------DAYEF-YSLGL- 136 (435)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCc-EEEEEECccCccchh-------hHHHH-HhcCC-
Confidence 334455677899999999999998887777777888888888 889999999765221 12222 23343
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
..++++||+++ .++.++++.+....+
T Consensus 137 ---~~~~~iSa~~g----------~gv~~l~~~I~~~~~ 162 (435)
T PRK00093 137 ---GEPYPISAEHG----------RGIGDLLDAILEELP 162 (435)
T ss_pred ---CCCEEEEeeCC----------CCHHHHHHHHHhhCC
Confidence 24789999986 458888888876443
No 153
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.79 E-value=1.5e-18 Score=145.71 Aligned_cols=157 Identities=22% Similarity=0.222 Sum_probs=102.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
....+|+++|+.|+|||||+++|.+... ... ..|.......+...+..+.+|||||+.++.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~------~~~-------------~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~ 77 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRL------AQH-------------VPTLHPTSEELTIGNIKFKTFDLGGHEQAR 77 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC------ccc-------------CCccCcceEEEEECCEEEEEEECCCCHHHH
Confidence 4457899999999999999999984211 000 011111122334456789999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHH----HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC-
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF- 216 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~----~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~- 216 (330)
..+..+++.+|++++|+|+++... ......+..+. ..+.| +++++||+|+..... .+++++.++....
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~~~-----~~~~~~~~~~~~~~ 151 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVP-FLILGNKIDLPGAVS-----EEELRQALGLYGTT 151 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCC-EEEEEeCCCCCCCcC-----HHHHHHHhCccccc
Confidence 888888899999999999986422 12223333322 23577 889999999874211 1233343332211
Q ss_pred ----------CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 217 ----------PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 217 ----------~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
....++++++||+++ .++.++++++.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~Sa~~~----------~gv~e~~~~l~~~ 189 (190)
T cd00879 152 TGKGVSLKVSGIRPIEVFMCSVVKR----------QGYGEAFRWLSQY 189 (190)
T ss_pred ccccccccccCceeEEEEEeEecCC----------CChHHHHHHHHhh
Confidence 112367999999997 4688899888764
No 154
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.79 E-value=2.4e-18 Score=171.13 Aligned_cols=146 Identities=18% Similarity=0.207 Sum_probs=104.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch-----
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA----- 139 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~----- 139 (330)
.++|+++|.+|+|||||+|+|++. ..... ....|+|.+.....+...+..+.||||||+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~------~~~~v---------~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~ 514 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHE------ERAVV---------NDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHK 514 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCc------ccccc---------CCCCCCCcCcceeEEEECCCEEEEEECCCcccCccc
Confidence 479999999999999999999842 11111 1123666666555566677889999999953
Q ss_pred ----hhHHH--HHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHh
Q 020176 140 ----DYVKN--MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (330)
Q Consensus 140 ----~~~~~--~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~ 213 (330)
++... ...+++.+|++++|+|++++...+....+..+...++| +++|+||+|+.+... .+.+.+++...+..
T Consensus 515 ~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~p-iIiV~NK~DL~~~~~-~~~~~~~~~~~l~~ 592 (712)
T PRK09518 515 LTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRA-LVLVFNKWDLMDEFR-RQRLERLWKTEFDR 592 (712)
T ss_pred chhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEEchhcCChhH-HHHHHHHHHHhccC
Confidence 22222 23456789999999999999998888888888788899 889999999986432 23333334333322
Q ss_pred cCCCCCCccEEEeecccc
Q 020176 214 YKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 214 ~~~~~~~~pv~~~Sa~~~ 231 (330)
. ...|++++||+++
T Consensus 593 ~----~~~~ii~iSAktg 606 (712)
T PRK09518 593 V----TWARRVNLSAKTG 606 (712)
T ss_pred C----CCCCEEEEECCCC
Confidence 2 2378999999986
No 155
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.79 E-value=2.1e-18 Score=144.33 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=104.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
..++|+++|..++|||||+.++........ .....+.........++.....+.||||||+++|..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~--------------~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~ 70 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESP--------------YGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT 70 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 357999999999999999999984211000 000112222222333333446789999999999998
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
.+..+++.+|++|+|+|.++....+. ..++..+... +.| +|+|.||+|+..... ...++.+++.+..+
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~~~---v~~~~~~~~a~~~~----- 141 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVP-KILVGNRLHLAFKRQ---VATEQAQAYAERNG----- 141 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccchhccC---CCHHHHHHHHHHcC-----
Confidence 88888899999999999987544332 3344444432 566 889999999965321 11335566666544
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
++++++||+++ .++.++++++..
T Consensus 142 ~~~~e~SAk~g----------~~V~~~F~~l~~ 164 (189)
T cd04121 142 MTFFEVSPLCN----------FNITESFTELAR 164 (189)
T ss_pred CEEEEecCCCC----------CCHHHHHHHHHH
Confidence 67999999997 346666666654
No 156
>PLN03118 Rab family protein; Provisional
Probab=99.79 E-value=2.7e-18 Score=146.71 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=103.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
+..++|+++|.+|+|||||+++|+...... .....+.+.......++.....+.||||||+++|.
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~---------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 76 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVED---------------LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR 76 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC---------------cCCCceeEEEEEEEEECCEEEEEEEEECCCchhhH
Confidence 345799999999999999999998532100 00111222323333333334678999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhH-HHH-HHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTK-EHI-LLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~-~~l-~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
..+..+++.+|++++|+|+++....+.. +.| ..+.. .+.| +++|+||+|+...... -.++...+....+
T Consensus 77 ~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~i---~~~~~~~~~~~~~- 151 (211)
T PLN03118 77 TLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDRESERDV---SREEGMALAKEHG- 151 (211)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCcc---CHHHHHHHHHHcC-
Confidence 8888889999999999999874333332 222 22221 2456 7789999999753221 1123334444433
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++...+
T Consensus 152 ----~~~~e~SAk~~----------~~v~~l~~~l~~~~ 176 (211)
T PLN03118 152 ----CLFLECSAKTR----------ENVEQCFEELALKI 176 (211)
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 67999999986 35777777776554
No 157
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.79 E-value=1.5e-18 Score=142.93 Aligned_cols=155 Identities=19% Similarity=0.129 Sum_probs=101.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
+|+++|..|+|||||+++|.+... . . ...|+......++..+..+.+|||||+.++...+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~-------~-----~-------~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF-------M-----Q-------PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-------C-----C-------cCCcCceeEEEEEECCEEEEEEECCCChhcchHHH
Confidence 588999999999999999984210 0 0 01122112223455678899999999999988888
Q ss_pred HhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC-CCCC
Q 020176 147 TGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF-PGDE 220 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 220 (330)
.+++.+|++++|+|+++... .....++..+.. .+.| +++|+||+|+..... .+++.++++...+ ....
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~ 135 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDAL-LLIFANKQDVAGALS-----VEEMTELLSLHKLCCGRS 135 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccCCC-----HHHHHHHhCCccccCCCc
Confidence 88999999999999987422 222333333321 1356 889999999864211 1123333322211 1123
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++++||+++ .++.+++++|.+.++
T Consensus 136 ~~~~~~Sa~~g----------~gv~~~f~~l~~~~~ 161 (169)
T cd04158 136 WYIQGCDARSG----------MGLYEGLDWLSRQLV 161 (169)
T ss_pred EEEEeCcCCCC----------CCHHHHHHHHHHHHh
Confidence 57889999997 468888998887654
No 158
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.79 E-value=4.4e-18 Score=142.20 Aligned_cols=157 Identities=18% Similarity=0.155 Sum_probs=101.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
.+..+|+++|.+|+|||||+++|.+.. .... ..|.......+...+..+.++||||+..+.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~------~~~~-------------~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 75 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDR------LAQH-------------QPTQHPTSEELAIGNIKFTTFDLGGHQQAR 75 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCC------Cccc-------------CCccccceEEEEECCEEEEEEECCCCHHHH
Confidence 445799999999999999999998421 1000 001111112233456789999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHH----HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC-
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF- 216 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~----~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~- 216 (330)
..+..++..+|++++|+|+++... ....+.+..+. ..++| +++|+||+|+..... .+ ++++.+.....
T Consensus 76 ~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~~-~~----~i~~~l~l~~~~ 149 (184)
T smart00178 76 RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP-FLILGNKIDAPYAAS-ED----ELRYALGLTNTT 149 (184)
T ss_pred HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCCC-HH----HHHHHcCCCccc
Confidence 888888999999999999987422 22222333222 24677 889999999864211 11 22222211110
Q ss_pred ------CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 217 ------PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 217 ------~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
......++++||+++ .|+.+++++|.+.
T Consensus 150 ~~~~~~~~~~~~i~~~Sa~~~----------~g~~~~~~wl~~~ 183 (184)
T smart00178 150 GSKGKVGVRPLEVFMCSVVRR----------MGYGEGFKWLSQY 183 (184)
T ss_pred ccccccCCceeEEEEeecccC----------CChHHHHHHHHhh
Confidence 112456999999997 4688888888653
No 159
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2e-18 Score=139.00 Aligned_cols=148 Identities=19% Similarity=0.137 Sum_probs=103.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|.++|..|+|||.|+-++......... ...-|+........++....++++|||+|+++|.
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~--------------~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFr 72 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESY--------------ISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFR 72 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhh--------------cceeeeEEEEEEeeecceEEEEEeeeccccHHHh
Confidence 45679999999999999999998732111100 0111343444455555566789999999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..+.++++.||++|+|+|.++..... ...++..+... ++| .++|.||+|+.+.... ..++.+++...+++
T Consensus 73 tit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~-~lLVGNK~Dl~~~~~v---~~~~a~~fa~~~~~-- 146 (205)
T KOG0084|consen 73 TITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVP-KLLVGNKCDLTEKRVV---STEEAQEFADELGI-- 146 (205)
T ss_pred hhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCC-eEEEeeccccHhheec---CHHHHHHHHHhcCC--
Confidence 99999999999999999999844333 34455555544 567 6689999999864321 22345666676663
Q ss_pred CCccEEEeeccccc
Q 020176 219 DEIPIIRGSATSAL 232 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~ 232 (330)
.+++++||+.+.
T Consensus 147 --~~f~ETSAK~~~ 158 (205)
T KOG0084|consen 147 --PIFLETSAKDST 158 (205)
T ss_pred --cceeecccCCcc
Confidence 239999999974
No 160
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.79 E-value=2.9e-18 Score=143.14 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=98.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEe-eeCCeeEEEEeCCCchhhHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY-ETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~-~~~~~~i~iiDtPG~~~~~~ 143 (330)
.++|+++|.+|+|||||++++...... .. ....|.+........ ...+..+.+|||||+++|..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~------------~~---~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 67 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV------------NT---VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRP 67 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC------------Cc---CCccccceeEEEeeccCCCceEEEEEECCCcHhHHH
Confidence 468999999999999999999732110 00 000122222222221 22456899999999999988
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchh-hHHHH----HHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC-
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQ-TKEHI----LLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP- 217 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l----~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~- 217 (330)
.+...++.+|++++|+|+++..... ....+ ......++| +++|+||+|+..... .+++..++......
T Consensus 68 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~~~-----~~~~~~~~~~~~~~~ 141 (183)
T cd04152 68 LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP-VLVLANKQDLPNALS-----VSEVEKLLALHELSA 141 (183)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCccccCC-----HHHHHHHhCccccCC
Confidence 8888888999999999998742211 11222 222334678 889999999864211 11222222211111
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
...++++++||+++ .++.++++++.+.+
T Consensus 142 ~~~~~~~~~SA~~~----------~gi~~l~~~l~~~l 169 (183)
T cd04152 142 STPWHVQPACAIIG----------EGLQEGLEKLYEMI 169 (183)
T ss_pred CCceEEEEeecccC----------CCHHHHHHHHHHHH
Confidence 12367999999997 45777777666544
No 161
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.79 E-value=2.2e-18 Score=141.00 Aligned_cols=156 Identities=21% Similarity=0.178 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|.+|+|||||++++........ ...+. + ........++.....+.||||||+++|...+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~---------~~~t~-----~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK---------YDPTI-----E-DFYRKEIEVDSSPSVLEILDTAGTEQFASMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC---------CCCch-----h-heEEEEEEECCEEEEEEEEECCCcccccchH
Confidence 5899999999999999999884211100 00000 0 0111222233333467899999999998888
Q ss_pred HHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 146 ITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
..+++.+|++++|+|.++.... ...+++..+.. .++| +++|+||+|+....... .++...+.+.++
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~~~~---~~~~~~~~~~~~----- 137 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESEREVS---SAEGRALAEEWG----- 137 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcCccC---HHHHHHHHHHhC-----
Confidence 8888999999999999874322 22333333332 3677 88999999986532111 112233334433
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+|++++||+++ .++.++++++.+.+
T Consensus 138 ~~~~~~Sa~~~----------~~v~~l~~~l~~~l 162 (163)
T cd04176 138 CPFMETSAKSK----------TMVNELFAEIVRQM 162 (163)
T ss_pred CEEEEecCCCC----------CCHHHHHHHHHHhc
Confidence 58999999987 45888888876543
No 162
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.79 E-value=1.6e-18 Score=145.59 Aligned_cols=155 Identities=19% Similarity=0.133 Sum_probs=97.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
+|+++|.+|+|||||+++|........ ...+. +... .....++.....+.||||||+++|.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~---------~~~t~-----~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVET---------YDPTI-----EDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc---------CCCch-----HhhE-EEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence 489999999999999999984211100 00000 0001 11122222334688999999999998888
Q ss_pred HhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH------cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 147 TGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~------~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
.+++.+|++|+|+|.++...... ..++..+.. .++| +++|+||+|+...... ..++..++.+.++
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~~~v---~~~~~~~~~~~~~---- 137 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP-IMIVGNKCDKVYEREV---STEEGAALARRLG---- 137 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCC-EEEEEEChhccccCcc---CHHHHHHHHHHhC----
Confidence 89999999999999987443222 333333332 2467 8899999999753221 1122334444443
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++.+.+
T Consensus 138 -~~~~e~SAk~~----------~~v~~l~~~l~~~l 162 (190)
T cd04144 138 -CEFIEASAKTN----------VNVERAFYTLVRAL 162 (190)
T ss_pred -CEEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 57999999996 34666666665543
No 163
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.79 E-value=2.4e-18 Score=140.06 Aligned_cols=141 Identities=23% Similarity=0.295 Sum_probs=96.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc----hhhH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH----ADYV 142 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~----~~~~ 142 (330)
+|+++|++|+|||||+|+|.+. ... . ..+. ...+... .+|||||. .++.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~------~~~------~--------~~~~---~v~~~~~----~~iDtpG~~~~~~~~~ 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGN------YTL------A--------RKTQ---AVEFNDK----GDIDTPGEYFSHPRWY 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCC------Ccc------C--------ccce---EEEECCC----CcccCCccccCCHHHH
Confidence 7999999999999999998732 110 0 0111 1112111 27999995 5666
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (330)
..+..++..+|++++|+|++++........+.. ..+.| +++++||+|+...+ .+.+.++++..++. .|
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~------~~~~~~~~~~~~~~---~p 123 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKR-QIAVISKTDMPDAD------VAATRKLLLETGFE---EP 123 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCC-eEEEEEccccCccc------HHHHHHHHHHcCCC---CC
Confidence 777777889999999999987654444332222 23567 88999999986521 12345556666542 69
Q ss_pred EEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 223 v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++||+++ +++.++++.+.+.++
T Consensus 124 ~~~~Sa~~g----------~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 124 IFELNSHDP----------QSVQQLVDYLASLTK 147 (158)
T ss_pred EEEEECCCc----------cCHHHHHHHHHHhch
Confidence 999999997 568899998887664
No 164
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.79 E-value=2.2e-18 Score=142.42 Aligned_cols=156 Identities=19% Similarity=0.167 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|..|+|||||++++......... .+. .+... .....++.....+.||||||..+|...+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~-----------~~t---~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~ 67 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYH-----------DPT---IEDAY-KQQARIDNEPALLDILDTAGQAEFTAMR 67 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCc-----------CCc---ccceE-EEEEEECCEEEEEEEEeCCCchhhHHHh
Confidence 68999999999999999999843111000 000 01011 1112233334578999999999998888
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhHH-HHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTKE-HILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~~-~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
..+++.+|++++|+|.++....+... ++..+.. .++| +++|+||+|+...... ..++..++.+..+
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~~~v---~~~~~~~~a~~~~----- 138 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP-LVLVGNKVDLESQRQV---TTEEGRNLAREFN----- 138 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhcCcc---CHHHHHHHHHHhC-----
Confidence 88899999999999998865544333 3333332 3567 8899999998653211 1223344455443
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++...+
T Consensus 139 ~~~~e~Sa~~~----------~~v~~~f~~l~~~~ 163 (172)
T cd04141 139 CPFFETSAALR----------HYIDDAFHGLVREI 163 (172)
T ss_pred CEEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 68999999997 35777777776543
No 165
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.79 E-value=1.8e-18 Score=138.25 Aligned_cols=136 Identities=28% Similarity=0.267 Sum_probs=90.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch----hhH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA----DYV 142 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~----~~~ 142 (330)
+|+++|++|+|||||+|+|++.. .. ...|.. .+... .+|||||+. .+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~------~~--------------~~~t~~-----~~~~~---~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE------IL--------------YKKTQA-----VEYND---GAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc------cc--------------ccccee-----EEEcC---eeecCchhhhhhHHHH
Confidence 79999999999999999998321 00 001111 11111 689999973 344
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (330)
..+...++.+|++++|+|++++...+...++.. .+.| +++|+||+|+.+... ..++..++++..+. .|
T Consensus 54 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p-~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~~----~~ 121 (142)
T TIGR02528 54 SALIVTAADADVIALVQSATDPESRFPPGFASI---FVKP-VIGLVTKIDLAEADV----DIERAKELLETAGA----EP 121 (142)
T ss_pred HHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCC-eEEEEEeeccCCccc----CHHHHHHHHHHcCC----Cc
Confidence 444456789999999999988766555433332 2446 888999999975321 12234455555443 47
Q ss_pred EEEeeccccccCCccccchhhHHHHHHHHh
Q 020176 223 IIRGSATSALQGKNEEIGKKAILKLMDAVD 252 (330)
Q Consensus 223 v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~ 252 (330)
++++||+++ .++.++++++.
T Consensus 122 ~~~~Sa~~~----------~gi~~l~~~l~ 141 (142)
T TIGR02528 122 IFEISSVDE----------QGLEALVDYLN 141 (142)
T ss_pred EEEEecCCC----------CCHHHHHHHHh
Confidence 999999987 45888888764
No 166
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.79 E-value=1.3e-17 Score=140.68 Aligned_cols=161 Identities=20% Similarity=0.243 Sum_probs=107.2
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc---
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH--- 138 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~--- 138 (330)
....++|+++|++|+|||||+++|++.. .... .....|.|.......+ +..+.||||||+
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~-----~~~~---------~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRK-----NLAR---------TSKTPGRTQLINFFEV---NDKLRLVDLPGYGYA 83 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCC-----Cccc---------ccCCCCceeEEEEEec---CCeEEEeCCCCCCCc
Confidence 3456799999999999999999998421 0110 0111244444433322 367999999995
Q ss_pred -------hhhHHHHHHhhh---ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHH
Q 020176 139 -------ADYVKNMITGAA---QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELR 208 (330)
Q Consensus 139 -------~~~~~~~~~~~~---~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~ 208 (330)
.++......++. .++++++|+|+..+......+.+..+...++| +++++||+|+.+..+. +...+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~-~iiv~nK~Dl~~~~~~-~~~~~~i~ 161 (196)
T PRK00454 84 KVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIP-VLIVLTKADKLKKGER-KKQLKKVR 161 (196)
T ss_pred CCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCc-EEEEEECcccCCHHHH-HHHHHHHH
Confidence 334333333343 34678889998887666665666677778888 8889999999875433 33333455
Q ss_pred HHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 209 ~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+.+... ..+++++||+++ .++.++++.+..++.
T Consensus 162 ~~l~~~-----~~~~~~~Sa~~~----------~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 162 KALKFG-----DDEVILFSSLKK----------QGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHhc-----CCceEEEEcCCC----------CCHHHHHHHHHHHhc
Confidence 555443 368999999987 458888888877654
No 167
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.79 E-value=6.3e-18 Score=140.07 Aligned_cols=158 Identities=18% Similarity=0.115 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|..|+|||||+.++......... .+. .+.... ....+......+.||||||+++|...+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~-----------~pt---~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEY-----------VPT---VFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLR 66 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-----------CCc---eeeeeE-EEEEECCEEEEEEEEECCCccchhhhh
Confidence 58999999999999999999842111000 000 011111 112233333678899999999998877
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhH-H-HHHHHHHc--CCCeEEEEEeeccCcChHHHHHHH---------HHHHHHHHH
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTK-E-HILLARQV--GVPSLVCFLNKVDLVEDEELLELV---------EMELRELLS 212 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~-~-~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~---------~~~~~~~~~ 212 (330)
..+++.+|++++|+|.++....+.. + ++..+... ++| +++|.||+|+....+..+.+ .++..++.+
T Consensus 67 ~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~ 145 (175)
T cd01874 67 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP-FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLAR 145 (175)
T ss_pred hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHH
Confidence 7788899999999999875443332 2 33334332 567 88999999987643322211 122333444
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
..+. ++++++||+++ .++.++++.+..
T Consensus 146 ~~~~----~~~~e~SA~tg----------~~v~~~f~~~~~ 172 (175)
T cd01874 146 DLKA----VKYVECSALTQ----------KGLKNVFDEAIL 172 (175)
T ss_pred HhCC----cEEEEecCCCC----------CCHHHHHHHHHH
Confidence 4432 68999999997 457888877654
No 168
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.79 E-value=5.5e-18 Score=139.17 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=100.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
+|+++|..|+|||||+++|........ ... .....++ ...+......+.+|||||+.++...+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~---------~~~----~~~~~~~---~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN---------VPR----VLPEITI---PADVTPERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc---------CCC----cccceEe---eeeecCCeEEEEEEeCCCchhhhHHHh
Confidence 799999999999999999985311100 000 0001111 112333456789999999998887777
Q ss_pred HhhhccCeEEEEEeCCCCCchhhH--HHHHHHHH--cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020176 147 TGAAQMDGGILVVSAPDGPMPQTK--EHILLARQ--VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~~~~~--~~l~~~~~--~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (330)
..+..+|++++|+|+++....+.. .++..+.. .++| +++|+||+|+.+..... ..++++..+.+.+.. ..+
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~---~~~ 140 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGSSQA-GLEEEMLPIMNEFRE---IET 140 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhcccccchh-HHHHHHHHHHHHHhc---ccE
Confidence 778899999999999875444432 23344433 2567 88999999997643211 122233333333321 137
Q ss_pred EEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 223 v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++++||+++ .++.++++.+...
T Consensus 141 ~~e~Sa~~~----------~~v~~lf~~~~~~ 162 (166)
T cd01893 141 CVECSAKTL----------INVSEVFYYAQKA 162 (166)
T ss_pred EEEeccccc----------cCHHHHHHHHHHH
Confidence 999999997 4588888877654
No 169
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.79 E-value=3.1e-18 Score=146.72 Aligned_cols=157 Identities=16% Similarity=0.096 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEe--EEEEeee-CCeeEEEEeCCCchhhH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYET-AKRHYAHVDCPGHADYV 142 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~--~~~~~~~-~~~~i~iiDtPG~~~~~ 142 (330)
++|+++|.+|+|||||+++|.+....... .+.++.+. ....++. ....+.||||||++.+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~----------------~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~ 64 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSY----------------KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG 64 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH
Confidence 37999999999999999999842111000 01122222 2222222 24678999999999988
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc-----CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV-----GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~-----~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
......++.+|++|+|+|+++....+. .+++..+... ..+++++|.||+|+..... ...++..++.+.++
T Consensus 65 ~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~---v~~~~~~~~~~~~~- 140 (215)
T cd04109 65 KMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT---VKDDKHARFAQANG- 140 (215)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccc---cCHHHHHHHHHHcC-
Confidence 888888999999999999987433222 2333444332 1233889999999975321 12234455555554
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++++||+++ +++.++++++...+.
T Consensus 141 ----~~~~~iSAktg----------~gv~~lf~~l~~~l~ 166 (215)
T cd04109 141 ----MESCLVSAKTG----------DRVNLLFQQLAAELL 166 (215)
T ss_pred ----CEEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 57899999997 458888887776553
No 170
>PLN03110 Rab GTPase; Provisional
Probab=99.79 E-value=3.2e-18 Score=146.60 Aligned_cols=159 Identities=17% Similarity=0.122 Sum_probs=103.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
..++|+++|+.|+|||||+++|++...... .....|.........++.....+.||||||+++|..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~--------------~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~ 76 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLE--------------SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA 76 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 457999999999999999999984211100 000112222223333333345789999999999998
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
.....++.+|++++|+|.++....+. ..++..+... ++| +++|.||+|+....+.. .++...+.+..+
T Consensus 77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~~---~~~~~~l~~~~~---- 148 (216)
T PLN03110 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKSDLNHLRSVA---EEDGQALAEKEG---- 148 (216)
T ss_pred HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEEChhcccccCCC---HHHHHHHHHHcC----
Confidence 88888999999999999987433333 3344444432 577 88999999986532211 123333334333
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+|++++||+++ .++.++++.+...+
T Consensus 149 -~~~~e~SA~~g----------~~v~~lf~~l~~~i 173 (216)
T PLN03110 149 -LSFLETSALEA----------TNVEKAFQTILLEI 173 (216)
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 78999999996 34666666665544
No 171
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.79 E-value=3.5e-18 Score=143.44 Aligned_cols=162 Identities=15% Similarity=0.061 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|..|+|||||+++|.+......... + .+... ......+.....+.||||||+++|....
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~---------t-----~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~ 65 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEP---------T-----VFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLR 65 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCC---------c-----ceeee-EEEEEECCEEEEEEEEECCCChhccccc
Confidence 3799999999999999999984311100000 0 00110 1112223333678999999999987777
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhH--HHHHHHHHc--CCCeEEEEEeeccCcChHHHHHH---------HHHHHHHHHH
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLEL---------VEMELRELLS 212 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~--~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~---------~~~~~~~~~~ 212 (330)
..+++.+|++++|+|.++....+.. .++..+... +.| +++|.||+|+....+..+. ..++..++.+
T Consensus 66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 144 (189)
T cd04134 66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVK-LVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAK 144 (189)
T ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 7778899999999999875443332 234444432 567 8899999999764322111 1122334444
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
..+ .++++++||+++ .++.++++++...+..
T Consensus 145 ~~~----~~~~~e~SAk~~----------~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 145 RIN----ALRYLECSAKLN----------RGVNEAFTEAARVALN 175 (189)
T ss_pred HcC----CCEEEEccCCcC----------CCHHHHHHHHHHHHhc
Confidence 443 268999999997 4588888888766543
No 172
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.78 E-value=4.4e-18 Score=140.55 Aligned_cols=158 Identities=19% Similarity=0.197 Sum_probs=101.8
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (330)
+....++|+++|++|+|||||+++|.+.. .... ....|.+. ..+...+..+.+|||||+.+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~------~~~~---------~~t~g~~~----~~i~~~~~~~~~~D~~G~~~ 70 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASED------ISHI---------TPTQGFNI----KTVQSDGFKLNVWDIGGQRA 70 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCC------Cccc---------CCCCCcce----EEEEECCEEEEEEECCCCHH
Confidence 33446899999999999999999998421 0000 00112222 12334567899999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHH----HHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA----RQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~----~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
+...+...+..+|++++|+|+.+... ......+... ...++| +++++||+|+....+. + ++.+.+....
T Consensus 71 ~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~-~----~i~~~l~~~~ 144 (173)
T cd04155 71 IRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVP-VLVFANKQDLATAAPA-E----EIAEALNLHD 144 (173)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECCCCccCCCH-H----HHHHHcCCcc
Confidence 88888888899999999999986321 1122222222 234678 8889999998763211 1 1222222212
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
+....++++++||+++ +++++++++|.+
T Consensus 145 ~~~~~~~~~~~Sa~~~----------~gi~~~~~~l~~ 172 (173)
T cd04155 145 LRDRTWHIQACSAKTG----------EGLQEGMNWVCK 172 (173)
T ss_pred cCCCeEEEEEeECCCC----------CCHHHHHHHHhc
Confidence 2223457889999997 568999988864
No 173
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.78 E-value=4.6e-18 Score=138.54 Aligned_cols=154 Identities=22% Similarity=0.179 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEE--eEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIA--TAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~--~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
.||+++|.+|+|||||+++|........ ..+.++.. .....+......+.+|||||+..+..
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 64 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEK----------------HESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC----------------cCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH
Confidence 3799999999999999999984311100 00011111 11222222335689999999999888
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhhH-HHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~~-~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
.....+..+|++++|+|.+++...+.. .++..+... ++| +++|+||+|+...... ..+++.++.+.++
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~~~---~~~~~~~~~~~~~---- 136 (162)
T cd04123 65 LGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRVV---SKSEAEEYAKSVG---- 136 (162)
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCC---CHHHHHHHHHHcC----
Confidence 877788899999999999875433222 222333322 467 8899999999853211 1123444455443
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.+++++|++++ .++.++++++.+.
T Consensus 137 -~~~~~~s~~~~----------~gi~~~~~~l~~~ 160 (162)
T cd04123 137 -AKHFETSAKTG----------KGIEELFLSLAKR 160 (162)
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 67899999997 4688888887654
No 174
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.78 E-value=2.4e-18 Score=141.66 Aligned_cols=158 Identities=18% Similarity=0.154 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|.+|+|||||+++|++.......... .................+.+|||||++++....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~ 65 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPT---------------VFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLR 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc---------------eeeeeEEEEEECCEEEEEEEEeCCCcccccccc
Confidence 47999999999999999999853211000000 000111122223334578999999999887666
Q ss_pred HHhhhccCeEEEEEeCCCCCchhh--HHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHH--------HHHHHHHHHHh
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVCFLNKVDLVEDEELLEL--------VEMELRELLSF 213 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~--~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~--------~~~~~~~~~~~ 213 (330)
...+..+|++++|+|+++....+. .+++..+... ++| +++|+||+|+......... ..++..++...
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 144 (171)
T cd00157 66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE 144 (171)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence 667788999999999987433222 2233333333 477 8899999999875432111 12344555555
Q ss_pred cCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 214 ~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
++. .+++++||+++ +++.++++.+..
T Consensus 145 ~~~----~~~~~~Sa~~~----------~gi~~l~~~i~~ 170 (171)
T cd00157 145 IGA----IGYMECSALTQ----------EGVKEVFEEAIR 170 (171)
T ss_pred hCC----eEEEEeecCCC----------CCHHHHHHHHhh
Confidence 543 48999999987 468888888754
No 175
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=3.7e-18 Score=155.35 Aligned_cols=155 Identities=23% Similarity=0.240 Sum_probs=119.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh-
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY- 141 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~- 141 (330)
..-++++++|.||+|||||+|+|+ ++..+++++.. |+|.+.....+...+..+.++||+|..+-
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~------~~d~AIVTdI~---------GTTRDviee~i~i~G~pv~l~DTAGiRet~ 279 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALL------GRDRAIVTDIA---------GTTRDVIEEDINLNGIPVRLVDTAGIRETD 279 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHh------cCCceEecCCC---------CCccceEEEEEEECCEEEEEEecCCcccCc
Confidence 345799999999999999999999 77788776654 99999999999999999999999995542
Q ss_pred -------HHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 142 -------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 142 -------~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
.......+..||.+++|+|+++....+....+. +...+.| +++|+||+|+..+... ... ++
T Consensus 280 d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~-~i~v~NK~DL~~~~~~--------~~~--~~ 347 (454)
T COG0486 280 DVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKP-IIVVLNKADLVSKIEL--------ESE--KL 347 (454)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCC-EEEEEechhccccccc--------chh--hc
Confidence 233455677899999999999986677766666 4455667 8899999999985321 111 11
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
....+++.+||+++ +|++.|.+++.+++..
T Consensus 348 ---~~~~~~i~iSa~t~----------~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 348 ---ANGDAIISISAKTG----------EGLDALREAIKQLFGK 377 (454)
T ss_pred ---cCCCceEEEEecCc----------cCHHHHHHHHHHHHhh
Confidence 12357999999997 5677788877776653
No 176
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=5.6e-18 Score=156.16 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC-eeEEEEeCCCchh----
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHAD---- 140 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~---- 140 (330)
..|+|+|.+|||||||+|+|++... .. ...+++|.......+...+ ..++|+||||..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~-------~v---------s~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~ 223 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP-------KV---------ADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE 223 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc-------cc---------cCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc
Confidence 3799999999999999999984311 11 1123566555555555554 4699999999643
Q ss_pred ---hHHHHHHhhhccCeEEEEEeCCC----CCchhhHHHHHHHHHc-----CCCeEEEEEeeccCcChHHHHHHHHHHHH
Q 020176 141 ---YVKNMITGAAQMDGGILVVSAPD----GPMPQTKEHILLARQV-----GVPSLVCFLNKVDLVEDEELLELVEMELR 208 (330)
Q Consensus 141 ---~~~~~~~~~~~~d~~l~vvda~~----~~~~~~~~~l~~~~~~-----~~p~iivviNK~D~~~~~~~~~~~~~~~~ 208 (330)
+...+...+..+|++++|+|++. ....+...++..+... +.| +++|+||+|+...++. .+.+.
T Consensus 224 ~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP-~IlVlNKiDl~~~~el----~~~l~ 298 (390)
T PRK12298 224 GAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKP-RWLVFNKIDLLDEEEA----EERAK 298 (390)
T ss_pred hhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCC-EEEEEeCCccCChHHH----HHHHH
Confidence 33445566788999999999872 2222333344444432 567 7789999999865433 22333
Q ss_pred HHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 209 ~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++.+.++. ..+++++||+++ .++.+|++.+.+.++
T Consensus 299 ~l~~~~~~---~~~Vi~ISA~tg----------~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 299 AIVEALGW---EGPVYLISAASG----------LGVKELCWDLMTFIE 333 (390)
T ss_pred HHHHHhCC---CCCEEEEECCCC----------cCHHHHHHHHHHHhh
Confidence 44444332 247999999986 457778877777665
No 177
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=7e-18 Score=152.60 Aligned_cols=157 Identities=19% Similarity=0.186 Sum_probs=102.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee-CCeeEEEEeCCCchh---
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-AKRHYAHVDCPGHAD--- 140 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~i~iiDtPG~~~--- 140 (330)
...|+|+|.+|||||||+++|+....... ..+.+|.......+.. ....++++||||..+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va----------------~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~ 221 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIA----------------DYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGAS 221 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccC----------------CCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCC
Confidence 35799999999999999999984211110 1124555555555554 456799999999642
Q ss_pred ----hHHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH-----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHH
Q 020176 141 ----YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVEMELREL 210 (330)
Q Consensus 141 ----~~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~-----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~ 210 (330)
+...+...+..+|++++|+|+++....+. ..+...+.. .++| +++|+||+|+.+..+..+ +....+
T Consensus 222 ~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp-~IIV~NKiDL~~~~~~~~---~~~~~~ 297 (335)
T PRK12299 222 EGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKP-RILVLNKIDLLDEEEERE---KRAALE 297 (335)
T ss_pred ccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCC-eEEEEECcccCCchhHHH---HHHHHH
Confidence 34455666778999999999986432222 233343433 2567 889999999986443221 122223
Q ss_pred HHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 211 ~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
.+.. ..+++++||+++ +++.++++++.+.++
T Consensus 298 ~~~~-----~~~i~~iSAktg----------~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 298 LAAL-----GGPVFLISAVTG----------EGLDELLRALWELLE 328 (335)
T ss_pred HHhc-----CCCEEEEEcCCC----------CCHHHHHHHHHHHHH
Confidence 3332 267999999997 468888888877654
No 178
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.78 E-value=7.8e-18 Score=141.52 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=103.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
.++|+++|..++|||||+.++....+....... -+... .....++.....+.||||||+++|...
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t--------------~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l 67 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPT--------------VFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRL 67 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCc--------------eEeee-EEEEEECCEEEEEEEEECCCchhhhhh
Confidence 479999999999999999999843211000000 01111 111223333467899999999999988
Q ss_pred HHHhhhccCeEEEEEeCCCCCchhhHH--HHHHHHH--cCCCeEEEEEeeccCcChHHHHHHH---------HHHHHHHH
Q 020176 145 MITGAAQMDGGILVVSAPDGPMPQTKE--HILLARQ--VGVPSLVCFLNKVDLVEDEELLELV---------EMELRELL 211 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~~~~~--~l~~~~~--~~~p~iivviNK~D~~~~~~~~~~~---------~~~~~~~~ 211 (330)
+..+++.+|++|+|+|.++....+... ++..+.. .++| +++|.||.|+.......+.+ .++..++.
T Consensus 68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a 146 (191)
T cd01875 68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVP-ILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALA 146 (191)
T ss_pred hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 888899999999999998754433332 2232322 3567 88999999997532211111 12344455
Q ss_pred HhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 212 ~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+..+. ++++++||+++ .++.++++.+.+.+.
T Consensus 147 ~~~~~----~~~~e~SAk~g----------~~v~e~f~~l~~~~~ 177 (191)
T cd01875 147 KQIHA----VKYLECSALNQ----------DGVKEVFAEAVRAVL 177 (191)
T ss_pred HHcCC----cEEEEeCCCCC----------CCHHHHHHHHHHHHh
Confidence 55443 68999999986 357777777766543
No 179
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.78 E-value=5.5e-18 Score=140.27 Aligned_cols=158 Identities=16% Similarity=0.112 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|..|+|||||+.++............. +... .....++.....+.||||||+++|...+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcc--------------eeee-EEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 589999999999999999998421110000000 0000 1112233334678899999999998877
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhH--HHHHHHHHc--CCCeEEEEEeeccCcChHHHHHH---------HHHHHHHHHH
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLEL---------VEMELRELLS 212 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~--~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~---------~~~~~~~~~~ 212 (330)
..+++.+|++|+|+|.++....+.. .++..+... ++| +++|.||+|+.+.....+. ..++..++.+
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 145 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 145 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 7888899999999999875443332 233333322 467 8899999999653221111 1224445555
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
.++. ++++++||+++ .++.++++.+.+
T Consensus 146 ~~~~----~~~~e~Sa~~~----------~~i~~~f~~l~~ 172 (174)
T cd01871 146 EIGA----VKYLECSALTQ----------KGLKTVFDEAIR 172 (174)
T ss_pred HcCC----cEEEEeccccc----------CCHHHHHHHHHH
Confidence 5542 58999999997 458888887764
No 180
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.78 E-value=4.1e-18 Score=140.22 Aligned_cols=157 Identities=18% Similarity=0.150 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|.+|+|||||++++.+..... ..+.. .+.. ......++.....+.+|||||+.+|...+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~---------~~~~t-----~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE---------SYDPT-----IEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc---------ccCCc-----chhe-EEEEEEECCEEEEEEEEeCCCcccchhhh
Confidence 589999999999999999997431100 00000 0101 11222233334578899999999999888
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhH-HHHHHHH----HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTK-EHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~-~~l~~~~----~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
...++.+|++++|+|.++....+.. .+...+. ..++| +++++||+|+...... ..++...+.+.++.
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~---- 138 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQV---SREDGVSLSQQWGN---- 138 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCC-EEEEEEChhccccCcc---CHHHHHHHHHHcCC----
Confidence 8889999999999999874332222 2222222 23578 8889999998753321 12233444455432
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+|++++||+++ .++.++++++...+
T Consensus 139 ~~~~~~SA~~~----------~~i~~~f~~i~~~~ 163 (168)
T cd04177 139 VPFYETSARKR----------TNVDEVFIDLVRQI 163 (168)
T ss_pred ceEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 78999999997 35777887776543
No 181
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=2.6e-17 Score=134.49 Aligned_cols=160 Identities=23% Similarity=0.286 Sum_probs=110.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC------
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG------ 137 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG------ 137 (330)
....|+++|.+|+|||||||+|++. +..++++ ..+|.|....++.+.. .+.|+|.||
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~-----k~LArtS---------ktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv 85 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQ-----KNLARTS---------KTPGRTQLINFFEVDD---ELRLVDLPGYGYAKV 85 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCC-----cceeecC---------CCCCccceeEEEEecC---cEEEEeCCCcccccC
Confidence 4458999999999999999999942 2123332 3458888887776653 389999999
Q ss_pred ----chhhHHHHHHhhh---ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHH
Q 020176 138 ----HADYVKNMITGAA---QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELREL 210 (330)
Q Consensus 138 ----~~~~~~~~~~~~~---~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~ 210 (330)
.+.+.+.+..++. ...++++++|+..++...+.+.+..+...++| +++++||+|.+...+....+ ...
T Consensus 86 ~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~-~~vv~tK~DKi~~~~~~k~l----~~v 160 (200)
T COG0218 86 PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIP-VIVVLTKADKLKKSERNKQL----NKV 160 (200)
T ss_pred CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCC-eEEEEEccccCChhHHHHHH----HHH
Confidence 2334444444443 46788999999999999999999999999999 77999999999865443322 223
Q ss_pred HHhcCCCCCCcc-EEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 211 LSFYKFPGDEIP-IIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 211 ~~~~~~~~~~~p-v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
.+.+.......+ ++..|+.+. .|++++.+.|.+++
T Consensus 161 ~~~l~~~~~~~~~~~~~ss~~k----------~Gi~~l~~~i~~~~ 196 (200)
T COG0218 161 AEELKKPPPDDQWVVLFSSLKK----------KGIDELKAKILEWL 196 (200)
T ss_pred HHHhcCCCCccceEEEEecccc----------cCHHHHHHHHHHHh
Confidence 333333222111 666666654 35777777766654
No 182
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.78 E-value=3.7e-18 Score=142.34 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=100.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
...+|+++|.+|+|||||++++... .... . ....|... ..++..+..+.+|||||++++..
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~-----~~~~-------~---~~T~~~~~----~~~~~~~~~~~l~D~~G~~~~~~ 76 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLG-----EVVT-------T---IPTIGFNV----ETVEYKNLKFTMWDVGGQDKLRP 76 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcC-----Cccc-------c---CCccccce----EEEEECCEEEEEEECCCCHhHHH
Confidence 3579999999999999999999631 1100 0 00012211 12344668899999999999998
Q ss_pred HHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHH-HH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA-RQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~-~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
.+..+++.+|++|+|+|+++... ....+.+... .. ...| +++|+||.|+...... + ++.+.+....+..
T Consensus 77 ~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~i~~~l~~~~~~~ 150 (182)
T PTZ00133 77 LWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV-LLVFANKQDLPNAMST-T----EVTEKLGLHSVRQ 150 (182)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCCCCH-H----HHHHHhCCCcccC
Confidence 88889999999999999986321 2222233322 21 2456 8899999998652211 1 2222221111222
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
..++++++||+++ .++.+++++|.+.+
T Consensus 151 ~~~~~~~~Sa~tg----------~gv~e~~~~l~~~i 177 (182)
T PTZ00133 151 RNWYIQGCCATTA----------QGLYEGLDWLSANI 177 (182)
T ss_pred CcEEEEeeeCCCC----------CCHHHHHHHHHHHH
Confidence 3467889999997 46888888887643
No 183
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.78 E-value=3.3e-18 Score=138.20 Aligned_cols=150 Identities=24% Similarity=0.219 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC--eeEEEEeCCCchhhHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHADYVK 143 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~~~~ 143 (330)
+||+++|++|+|||||+++|..... ..+..++++.......+...+ ..+.+|||||+.++..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 65 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF----------------ITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA 65 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC----------------cCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH
Confidence 6899999999999999999984311 111122444444443344445 6789999999999866
Q ss_pred HHHHhhhccCeEEEEEeCCCC-------CchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 144 NMITGAAQMDGGILVVSAPDG-------PMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~-------~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
........++.++.++|.... ...........+.. +.| +++++||+|+.... ...+....+...+.
T Consensus 66 ~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~~~~~-----~~~~~~~~~~~~~~ 138 (161)
T TIGR00231 66 IRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVP-IILVGNKIDLRDAK-----LKTHVAFLFAKLNG 138 (161)
T ss_pred HHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCc-EEEEEEcccCCcch-----hhHHHHHHHhhccC
Confidence 665556666666666665432 21222222232222 778 88999999998743 23344555555443
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHh
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVD 252 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~ 252 (330)
.+++++||+.+ .++.+++++|.
T Consensus 139 ----~~~~~~sa~~~----------~gv~~~~~~l~ 160 (161)
T TIGR00231 139 ----EPIIPLSAETG----------KNIDSAFKIVE 160 (161)
T ss_pred ----CceEEeecCCC----------CCHHHHHHHhh
Confidence 67999999987 45888887764
No 184
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.78 E-value=4.5e-18 Score=138.96 Aligned_cols=156 Identities=21% Similarity=0.180 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|.+|+|||||+++|+........... . +... .....++.....+.+|||||+.++....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~-----------~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPT-----------K---ADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCc-----------c---hhhE-EEEEEECCEEEEEEEEECCChhhhhHHH
Confidence 37999999999999999999843211110000 0 0000 1112233334678999999999999998
Q ss_pred HHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 146 ITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
...++.+|++++|+|..+... .....++..... .++| +++|+||+|+...... ...+...+.+.++
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~~---~~~~~~~~~~~~~----- 136 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQV---SSEEAANLARQWG----- 136 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEcccccccccc---CHHHHHHHHHHhC-----
Confidence 899999999999999876322 112233333322 4678 8899999999762111 1113334444443
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+|++++||+++ .++.++++.+.+.+
T Consensus 137 ~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 161 (164)
T cd04139 137 VPYVETSAKTR----------QNVEKAFYDLVREI 161 (164)
T ss_pred CeEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 58999999997 56888888876543
No 185
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.78 E-value=8.3e-18 Score=140.18 Aligned_cols=160 Identities=17% Similarity=0.203 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|..|+|||||++++.......... ...|.........++.....+.+|||+|+++|...+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~--------------~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~ 66 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYI--------------QTLGVNFMEKTISIRGTEITFSIWDLGGQREFINML 66 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------------CccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhh
Confidence 379999999999999999998431111000 001222222233333334678999999999998888
Q ss_pred HHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc--CCCeEEEEEeeccCcCh--HHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV--GVPSLVCFLNKVDLVED--EELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~--~~p~iivviNK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
..+++.+|++++|+|.++....+. .+++..+... ..+++ +|+||+|+... .+..+.+.++..++.+..+
T Consensus 67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pi-lVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~----- 140 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPI-LVGTKYDLFADLPPEEQEEITKQARKYAKAMK----- 140 (182)
T ss_pred HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE-EEEEchhccccccchhhhhhHHHHHHHHHHcC-----
Confidence 888899999999999987533322 3344444442 22324 78999999631 1111122334555555543
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
.+++++||+++ .++.++++++...+
T Consensus 141 ~~~~e~SAk~g----------~~v~~lf~~l~~~l 165 (182)
T cd04128 141 APLIFCSTSHS----------INVQKIFKIVLAKA 165 (182)
T ss_pred CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 67999999986 35777777776544
No 186
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.78 E-value=4.2e-18 Score=146.11 Aligned_cols=158 Identities=14% Similarity=0.038 Sum_probs=102.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|..|+|||||+++++........ ....|.+..............+.||||||+++|.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~--------------~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 76 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCcc--------------CCccceeEEEEEEEECCeEEEEEEEECCCchhhh
Confidence 55689999999999999999998743111100 0111233322222233344688999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhH-HHHHHHHH--cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQ--VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~-~~l~~~~~--~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
..+..+++.+|++|+|+|.++....+.. .++..+.. .++| +++|+||+|+...... .+++ ++.+..
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~----~~~~-~~~~~~----- 145 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK----AKQV-TFHRKK----- 145 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhhhhccCC----HHHH-HHHHhc-----
Confidence 8777888999999999999885443332 33333332 3567 8899999998642111 1122 333332
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
.++++++||+++ .++.++++++...+
T Consensus 146 ~~~~~e~SAk~~----------~~i~~~f~~l~~~~ 171 (219)
T PLN03071 146 NLQYYEISAKSN----------YNFEKPFLYLARKL 171 (219)
T ss_pred CCEEEEcCCCCC----------CCHHHHHHHHHHHH
Confidence 267999999997 35777777766544
No 187
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.78 E-value=9.9e-18 Score=166.72 Aligned_cols=156 Identities=21% Similarity=0.230 Sum_probs=116.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh---
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--- 140 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--- 140 (330)
...+|+++|.+|+|||||+|+|++ ...... +...|+|.+......+..+..+.+|||||+..
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~------~~~~iv---------~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~ 338 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILG------RREAVV---------EDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE 338 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhC------CCceee---------cCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc
Confidence 346899999999999999999983 222221 11347777776666677788999999999653
Q ss_pred -----hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 141 -----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 141 -----~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
+...+..++..+|++|+|+|++++......+++..++..++| +++|+||+|+..... ...++ ...+
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~p-vIlV~NK~D~~~~~~-------~~~~~-~~lg 409 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKP-VVLAVNKIDDQASEY-------DAAEF-WKLG 409 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECcccccchh-------hHHHH-HHcC
Confidence 556667778899999999999998888887788888888999 889999999865321 11122 1234
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
+ -..+++||+++ .|+.+|++++...++.
T Consensus 410 ~----~~~~~iSA~~g----------~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 410 L----GEPYPISAMHG----------RGVGDLLDEALDSLKV 437 (712)
T ss_pred C----CCeEEEECCCC----------CCchHHHHHHHHhccc
Confidence 3 13579999987 4688888888887764
No 188
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.78 E-value=7.7e-18 Score=143.09 Aligned_cols=152 Identities=23% Similarity=0.269 Sum_probs=95.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC-eeEEEEeCCCchhh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHADY 141 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~~ 141 (330)
...++|+++|++|+|||||+|+|++....... ..+.|.......+...+ ..+.||||||+.+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 102 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED----------------QLFATLDPTTRRLRLPDGREVLLTDTVGFIRD 102 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCC----------------ccceeccceeEEEEecCCceEEEeCCCccccC
Confidence 44579999999999999999999854211000 01122222222233333 38999999997321
Q ss_pred --------HHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHH
Q 020176 142 --------VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRE 209 (330)
Q Consensus 142 --------~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~ 209 (330)
.......+..+|++++|+|++++..... ..+...+... ++| +++|+||+|+....... .
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~-viiV~NK~Dl~~~~~~~--------~ 173 (204)
T cd01878 103 LPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIP-MILVLNKIDLLDDEELE--------E 173 (204)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCC-EEEEEEccccCChHHHH--------H
Confidence 1122234568999999999987654333 2333344333 466 88999999998743211 1
Q ss_pred HHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 210 LLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 210 ~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.... ...+++++||+++ .++.+++++|...
T Consensus 174 ~~~~-----~~~~~~~~Sa~~~----------~gi~~l~~~L~~~ 203 (204)
T cd01878 174 RLEA-----GRPDAVFISAKTG----------EGLDELLEAIEEL 203 (204)
T ss_pred Hhhc-----CCCceEEEEcCCC----------CCHHHHHHHHHhh
Confidence 1221 3468999999997 4588888887654
No 189
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.78 E-value=3.9e-18 Score=141.15 Aligned_cols=160 Identities=18% Similarity=0.142 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|..++|||+|+.++....+....... -+.... ....++.....+.||||+|+++|....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~T--------------i~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~ 66 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT--------------VFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLR 66 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCc--------------ceeeeE-EEEEECCEEEEEEEEECCCCccccccc
Confidence 58999999999999999999843211100000 011111 112233344678999999999998888
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhH--HHHHHHHHc--CCCeEEEEEeeccCcChHHH-------HHHHHHHHHHHHHhc
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEEL-------LELVEMELRELLSFY 214 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~--~~l~~~~~~--~~p~iivviNK~D~~~~~~~-------~~~~~~~~~~~~~~~ 214 (330)
..+++.+|++|+|+|.++....+.. .++..+... ++| +++|.||+|+.+.... .....++..++.+..
T Consensus 67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 145 (176)
T cd04133 67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQI 145 (176)
T ss_pred hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHc
Confidence 8889999999999999875544432 345555432 566 8899999999653210 012233555666665
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+. .+++++||+++ .+++++++.+.+.+
T Consensus 146 ~~----~~~~E~SAk~~----------~nV~~~F~~~~~~~ 172 (176)
T cd04133 146 GA----AAYIECSSKTQ----------QNVKAVFDAAIKVV 172 (176)
T ss_pred CC----CEEEECCCCcc----------cCHHHHHHHHHHHH
Confidence 43 36999999997 35788887777644
No 190
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.78 E-value=6e-18 Score=139.89 Aligned_cols=158 Identities=17% Similarity=0.133 Sum_probs=100.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHHH
Q 020176 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMIT 147 (330)
Q Consensus 68 I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~ 147 (330)
|+|+|.+|+|||||++++.+....... .+. ..........++.....+.+|||||+++|......
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~-----------~~~----~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDY-----------VPT----VFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCC-----------CCc----EEeeeeEEEEECCEEEEEEEEECCCCcccchhchh
Confidence 579999999999999999853211000 000 00001112222333356899999999998877777
Q ss_pred hhhccCeEEEEEeCCCCCchhhH--HHHHHHHHc--CCCeEEEEEeeccCcChHHHHHH---------HHHHHHHHHHhc
Q 020176 148 GAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLEL---------VEMELRELLSFY 214 (330)
Q Consensus 148 ~~~~~d~~l~vvda~~~~~~~~~--~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~---------~~~~~~~~~~~~ 214 (330)
.+..+|++++|+|.++....+.. .++..+... ++| +++|+||+|+.......+. -.++..++.+..
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 144 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTP-IILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI 144 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHc
Confidence 88899999999999874332222 233333332 677 8999999999763321111 122344566665
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+. .+++++||+++ .++.++++.+...+
T Consensus 145 ~~----~~~~e~Sa~~~----------~~v~~lf~~l~~~~ 171 (174)
T smart00174 145 GA----VKYLECSALTQ----------EGVREVFEEAIRAA 171 (174)
T ss_pred CC----cEEEEecCCCC----------CCHHHHHHHHHHHh
Confidence 53 57999999997 45888888876543
No 191
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.77 E-value=6.5e-18 Score=139.68 Aligned_cols=158 Identities=16% Similarity=0.095 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|++|+|||||++++.+.......... ..........++.....+.+|||||+.+|....
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t---------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 65 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPT---------------VFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR 65 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc---------------eeeeeEEEEEECCEEEEEEEEeCCCcccccccc
Confidence 47999999999999999999853211000000 000011112223233457899999999988777
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhH--HHHHHHHH--cCCCeEEEEEeeccCcChHHHHHHH---------HHHHHHHHH
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQ--VGVPSLVCFLNKVDLVEDEELLELV---------EMELRELLS 212 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~--~~l~~~~~--~~~p~iivviNK~D~~~~~~~~~~~---------~~~~~~~~~ 212 (330)
...++.+|++++|+|..+....+.. .++..+.. .++| +++|+||+|+.+.......+ .++...+.+
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 144 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK 144 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 7778899999999999875332222 22333332 3677 88999999987543221111 223445555
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
.++. .+++++||+++ .++.++++.+..
T Consensus 145 ~~~~----~~~~e~Sa~~~----------~gi~~~f~~~~~ 171 (174)
T cd04135 145 EIGA----HCYVECSALTQ----------KGLKTVFDEAIL 171 (174)
T ss_pred HcCC----CEEEEecCCcC----------CCHHHHHHHHHH
Confidence 5553 57999999997 458888887764
No 192
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.77 E-value=7.8e-18 Score=133.81 Aligned_cols=152 Identities=18% Similarity=0.162 Sum_probs=107.3
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
+...++|.++|.+|+|||+|+|++....+.......+ |...-...+.++.....++||||+|+++|
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTI--------------gadFltKev~Vd~~~vtlQiWDTAGQERF 71 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATI--------------GADFLTKEVQVDDRSVTLQIWDTAGQERF 71 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhcccc--------------chhheeeEEEEcCeEEEEEEEecccHHHh
Confidence 3556899999999999999999998765554433322 22233334444444456889999999999
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchhhHHHHH--HHHH------cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHh
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHIL--LARQ------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~--~~~~------~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~ 213 (330)
...-...++.+|++++|+|.+..-.....+.|+ ++.. ...| +||+.||+|+...... ....++..++++.
T Consensus 72 qsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FP-FVilGNKiD~~~~~~r-~VS~~~Aq~WC~s 149 (210)
T KOG0394|consen 72 QSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFP-FVILGNKIDVDGGKSR-QVSEKKAQTWCKS 149 (210)
T ss_pred hhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCccc-EEEEcccccCCCCccc-eeeHHHHHHHHHh
Confidence 998889999999999999998755555544442 2222 2357 9999999999763222 2233356666766
Q ss_pred cCCCCCCccEEEeecccccc
Q 020176 214 YKFPGDEIPIIRGSATSALQ 233 (330)
Q Consensus 214 ~~~~~~~~pv~~~Sa~~~~~ 233 (330)
-| ++|+|++||+.+.|
T Consensus 150 ~g----nipyfEtSAK~~~N 165 (210)
T KOG0394|consen 150 KG----NIPYFETSAKEATN 165 (210)
T ss_pred cC----CceeEEeccccccc
Confidence 54 59999999998743
No 193
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.77 E-value=1.3e-17 Score=152.14 Aligned_cols=149 Identities=19% Similarity=0.215 Sum_probs=97.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee-CCeeEEEEeCCCc----
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-AKRHYAHVDCPGH---- 138 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~i~iiDtPG~---- 138 (330)
..++|+++|.+|+|||||+|+|++. . .... ...+.|.+.....+.. .+..+.||||||+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~------~-~~v~---------~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l 251 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGA------D-VYAA---------DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL 251 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC------c-eeec---------cCCccccCCEEEEEEeCCCceEEEEecCcccccC
Confidence 3479999999999999999999942 2 1111 1123444444444444 3568999999997
Q ss_pred -----hhhHHHHHHhhhccCeEEEEEeCCCCCchhhH-HHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHH
Q 020176 139 -----ADYVKNMITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRE 209 (330)
Q Consensus 139 -----~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~-~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~ 209 (330)
+.| ..+...+..+|++++|+|+++....... .+...+... ++| +++|+||+|+.+..+ + ..
T Consensus 252 ~~~lie~f-~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~p-iIlV~NK~Dl~~~~~----v----~~ 321 (351)
T TIGR03156 252 PHELVAAF-RATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIP-QLLVYNKIDLLDEPR----I----ER 321 (351)
T ss_pred CHHHHHHH-HHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCC-EEEEEEeecCCChHh----H----HH
Confidence 222 2334457789999999999876543332 222334333 567 889999999986422 1 11
Q ss_pred HHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 210 LLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 210 ~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
... ...+++++||+++ .|+.+|++.+.+.
T Consensus 322 ~~~------~~~~~i~iSAktg----------~GI~eL~~~I~~~ 350 (351)
T TIGR03156 322 LEE------GYPEAVFVSAKTG----------EGLDLLLEAIAER 350 (351)
T ss_pred HHh------CCCCEEEEEccCC----------CCHHHHHHHHHhh
Confidence 111 1146899999997 4688888887653
No 194
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.77 E-value=8.3e-18 Score=138.28 Aligned_cols=158 Identities=23% Similarity=0.180 Sum_probs=99.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
+|+++|.+|+|||||+++|.+. .... . ....|.+ ...+...+..+.+|||||+.++...+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~------~~~~----~-----~~t~g~~----~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE------IPKK----V-----APTVGFT----PTKLRLDKYEVCIFDLGGGANFRGIWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC------CCcc----c-----cCcccce----EEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999832 0000 0 0001222 223445678899999999999998888
Q ss_pred HhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHH--HHHHHHhcCCCCC
Q 020176 147 TGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEME--LRELLSFYKFPGD 219 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 219 (330)
.+++.+|++++|+|+++... ......+..+.. .++| +++|+||+|+.......+ +.+. +.++.+.. ..
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~~~~~-i~~~~~l~~~~~~~---~~ 136 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKP-ILVLANKQDKKNALLGAD-VIEYLSLEKLVNEN---KS 136 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCCCHHH-HHHhcCcccccCCC---Cc
Confidence 99999999999999987432 223334443332 3567 889999999976321111 1111 11111111 12
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHh
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVD 252 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~ 252 (330)
.++++++||+++.-... ..++.+-++||.
T Consensus 137 ~~~~~~~Sa~~g~~~~~----~~g~~~~~~wl~ 165 (167)
T cd04161 137 LCHIEPCSAIEGLGKKI----DPSIVEGLRWLL 165 (167)
T ss_pred eEEEEEeEceeCCCCcc----ccCHHHHHHHHh
Confidence 36899999998621100 024777777765
No 195
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.77 E-value=1e-17 Score=136.93 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=99.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
+|+++|++|+|||||++++......... ....+.........+......+.+|||||+++|.....
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 67 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH--------------ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITK 67 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC--------------CCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHH
Confidence 7999999999999999999842111000 00011212222223333335688999999999988888
Q ss_pred HhhhccCeEEEEEeCCCCCch-hhHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020176 147 TGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (330)
.+++.+|++++|+|.++.... ....++..+... ++| +++|.||+|+...... ..++...+.+.++ ++
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~v---~~~~~~~~~~~~~-----~~ 138 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQV---GDEQGNKLAKEYG-----MD 138 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCC---CHHHHHHHHHHcC-----CE
Confidence 888999999999999874322 223333333332 456 8899999998753221 1123444444443 67
Q ss_pred EEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 223 v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
++++||+++ .++.+++++|.+
T Consensus 139 ~~e~Sa~~~----------~~v~~~f~~l~~ 159 (161)
T cd04117 139 FFETSACTN----------SNIKESFTRLTE 159 (161)
T ss_pred EEEEeCCCC----------CCHHHHHHHHHh
Confidence 999999997 358888888765
No 196
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.77 E-value=1.5e-17 Score=150.42 Aligned_cols=156 Identities=21% Similarity=0.274 Sum_probs=99.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC-eeEEEEeCCCchh--
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHAD-- 140 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~-- 140 (330)
....|+++|.+|+|||||+++|++....... ...+|.......+...+ ..++|+||||+.+
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~----------------y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a 219 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIAD----------------YPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGA 219 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccC----------------CCCCccCCEEEEEEeCCceEEEEEeCCCcccCC
Confidence 3458999999999999999999843111100 11234443333444444 7899999999642
Q ss_pred -----hHHHHHHhhhccCeEEEEEeCCCC----CchhhHHHHHHHHH-----cCCCeEEEEEeeccCcChHHHHHHHHHH
Q 020176 141 -----YVKNMITGAAQMDGGILVVSAPDG----PMPQTKEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVEME 206 (330)
Q Consensus 141 -----~~~~~~~~~~~~d~~l~vvda~~~----~~~~~~~~l~~~~~-----~~~p~iivviNK~D~~~~~~~~~~~~~~ 206 (330)
+.......+..+|++++|+|+++. ...+...+...+.. .+.| +++|+||+|+...... .+.
T Consensus 220 ~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK~DL~~~~~~----~~~ 294 (329)
T TIGR02729 220 SEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKP-RIVVLNKIDLLDEEEL----AEL 294 (329)
T ss_pred cccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCC-EEEEEeCccCCChHHH----HHH
Confidence 334455566789999999999863 11222222233322 2567 7899999999875322 222
Q ss_pred HHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 207 LRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 207 ~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
.+++.+.++ .+++++||+++ +++.++++++.+.+
T Consensus 295 ~~~l~~~~~-----~~vi~iSAktg----------~GI~eL~~~I~~~l 328 (329)
T TIGR02729 295 LKELKKALG-----KPVFPISALTG----------EGLDELLYALAELL 328 (329)
T ss_pred HHHHHHHcC-----CcEEEEEccCC----------cCHHHHHHHHHHHh
Confidence 233333333 57999999987 46888888887654
No 197
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.77 E-value=4.1e-18 Score=133.26 Aligned_cols=136 Identities=24% Similarity=0.284 Sum_probs=97.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC----chhhH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG----HADYV 142 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG----~~~~~ 142 (330)
||+++|++|+|||||+++|.+...... .|... .+ . =.+||||| +..|.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~--------------------KTq~i---~~--~---~~~IDTPGEyiE~~~~y 54 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYK--------------------KTQAI---EY--Y---DNTIDTPGEYIENPRFY 54 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcC--------------------cccee---Ee--c---ccEEECChhheeCHHHH
Confidence 799999999999999999984211111 11111 11 1 15699999 66677
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (330)
.........||.+++|.|+++....-. -.++..++.| +|-|+||+|+...++. + +..+++++..|.. .
T Consensus 55 ~aLi~ta~dad~V~ll~dat~~~~~~p---P~fa~~f~~p-vIGVITK~Dl~~~~~~---i-~~a~~~L~~aG~~----~ 122 (143)
T PF10662_consen 55 HALIVTAQDADVVLLLQDATEPRSVFP---PGFASMFNKP-VIGVITKIDLPSDDAN---I-ERAKKWLKNAGVK----E 122 (143)
T ss_pred HHHHHHHhhCCEEEEEecCCCCCccCC---chhhcccCCC-EEEEEECccCccchhh---H-HHHHHHHHHcCCC----C
Confidence 777777889999999999987433222 2344556778 8899999999943322 2 2667788888873 4
Q ss_pred EEEeeccccccCCccccchhhHHHHHHHHh
Q 020176 223 IIRGSATSALQGKNEEIGKKAILKLMDAVD 252 (330)
Q Consensus 223 v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~ 252 (330)
+|++|+.++ +|+++|.++|.
T Consensus 123 if~vS~~~~----------eGi~eL~~~L~ 142 (143)
T PF10662_consen 123 IFEVSAVTG----------EGIEELKDYLE 142 (143)
T ss_pred eEEEECCCC----------cCHHHHHHHHh
Confidence 799999997 67999988875
No 198
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.77 E-value=5.6e-18 Score=159.67 Aligned_cols=149 Identities=22% Similarity=0.240 Sum_probs=105.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH-
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV- 142 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~- 142 (330)
..++|+++|.+|+|||||+|+|++ ...... ....|+|.+.....+...+..+.+|||||+.++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~------~~~a~v---------~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLG------EERAIV---------TDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDD 278 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhC------CCCccc---------CCCCCcccccEEEEEEECCeEEEEEeCCCCCCCcc
Confidence 447999999999999999999983 222111 1123667666666666677889999999986542
Q ss_pred -------HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 143 -------KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 143 -------~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
......+..+|++++|+|++++...+..+.+.. ..+.| +++|+||+|+.+.... . ..
T Consensus 279 ~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~p-iiiV~NK~DL~~~~~~--------~---~~-- 342 (449)
T PRK05291 279 EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKP-VIVVLNKADLTGEIDL--------E---EE-- 342 (449)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCC-cEEEEEhhhccccchh--------h---hc--
Confidence 223456778999999999988765554444443 34667 8899999999764211 0 11
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
...+++++||+++ .++.+|++++...++
T Consensus 343 ---~~~~~i~iSAktg----------~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 343 ---NGKPVIRISAKTG----------EGIDELREAIKELAF 370 (449)
T ss_pred ---cCCceEEEEeeCC----------CCHHHHHHHHHHHHh
Confidence 2367999999996 458888888877664
No 199
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.77 E-value=6.5e-18 Score=167.48 Aligned_cols=153 Identities=24% Similarity=0.326 Sum_probs=108.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH-
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK- 143 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~- 143 (330)
.++|+++|++|+|||||+|+|++.....| ...|+|++.....++..+..+.++||||+.++..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vg----------------n~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~ 66 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVG----------------NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI 66 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccC----------------CCCCceEeeEEEEEEcCceEEEEEECCCccccccc
Confidence 46899999999999999999984321111 1247888877777888888999999999876532
Q ss_pred -------H--HHHhh--hccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH
Q 020176 144 -------N--MITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (330)
Q Consensus 144 -------~--~~~~~--~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~ 212 (330)
+ ...++ ..+|++++|+|+++.. .....+..+.+.++| +++|+||+|+.+.... ..+.+++.+
T Consensus 67 ~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giP-vIvVlNK~Dl~~~~~i----~id~~~L~~ 139 (772)
T PRK09554 67 SSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIP-CIVALNMLDIAEKQNI----RIDIDALSA 139 (772)
T ss_pred cccccHHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCC-EEEEEEchhhhhccCc----HHHHHHHHH
Confidence 1 11222 3689999999998742 233455667788999 8899999998753322 223444555
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
.+| +|++++||+++ ++++++.+.+....
T Consensus 140 ~LG-----~pVvpiSA~~g----------~GIdeL~~~I~~~~ 167 (772)
T PRK09554 140 RLG-----CPVIPLVSTRG----------RGIEALKLAIDRHQ 167 (772)
T ss_pred HhC-----CCEEEEEeecC----------CCHHHHHHHHHHhh
Confidence 555 68999999986 35677777666543
No 200
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.77 E-value=7.6e-18 Score=141.07 Aligned_cols=160 Identities=14% Similarity=0.099 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee-eCCeeEEEEeCCCchhhHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-TAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~i~iiDtPG~~~~~~~ 144 (330)
++|+++|.+|+|||||+++|.+.......... .+... ....... .....+.||||||+++|...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t--------------~~~~~-~~~i~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPT--------------VFENY-VTNIQGPNGKIIELALWDTAGQEEYDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCe--------------eeeee-EEEEEecCCcEEEEEEEECCCchhHHHH
Confidence 47999999999999999999853211000000 00111 1111121 22356899999999999888
Q ss_pred HHHhhhccCeEEEEEeCCCCCchhhH-H-HHHHHHH--cCCCeEEEEEeeccCcChHHHH-HHHHHHHHHHHHhcCCCCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPMPQTK-E-HILLARQ--VGVPSLVCFLNKVDLVEDEELL-ELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~~~~-~-~l~~~~~--~~~p~iivviNK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 219 (330)
....+..+|++++|+|.++....+.. . ++..... .++| +++|+||+|+....... ....++..++...++.
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~--- 141 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA--- 141 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC---
Confidence 87888899999999999874433332 1 2233322 2567 88999999987532100 0112244555666553
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
.+++++||+++ .++.++++.+...+
T Consensus 142 -~~~~e~Sa~~~----------~~v~~~f~~l~~~~ 166 (187)
T cd04132 142 -FAYLECSAKTM----------ENVEEVFDTAIEEA 166 (187)
T ss_pred -cEEEEccCCCC----------CCHHHHHHHHHHHH
Confidence 47999999986 34666666665543
No 201
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.77 E-value=1.2e-17 Score=136.59 Aligned_cols=158 Identities=15% Similarity=0.129 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee-eCCeeEEEEeCCCchhhHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-TAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~i~iiDtPG~~~~~~~ 144 (330)
++|+++|.+|+|||||+++|... +. .+... .....|.........++ .....+.+|||||+..+...
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~----~~-~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 68 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSN----GA-VFPKN-------YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDM 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC----CC-CcCcc-------CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHH
Confidence 37999999999999999999731 00 00000 00001222222223332 23478899999999998888
Q ss_pred HHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 145 MITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
+...+..+|++++|+|.++..... ...++..+... ++| +++|+||+|+.+..+... .+...+....+ .
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~-----~ 139 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAEVTD---AQAQAFAQANQ-----L 139 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccCCCH---HHHHHHHHHcC-----C
Confidence 888889999999999998743222 23333443333 467 889999999975422111 11222233322 6
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+++++||+++ .++.++++.+.+.
T Consensus 140 ~~~~~Sa~~~----------~gi~~l~~~l~~~ 162 (164)
T cd04101 140 KFFKTSALRG----------VGYEEPFESLARA 162 (164)
T ss_pred eEEEEeCCCC----------CChHHHHHHHHHH
Confidence 7999999997 4688888877653
No 202
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=3.9e-17 Score=130.50 Aligned_cols=167 Identities=21% Similarity=0.220 Sum_probs=117.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC-eeEEEEeCCCchhh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHADY 141 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~~ 141 (330)
....+|+|.|+.++||||++.++..... ..+...........++.+|+..........+ ..+.++|||||++|
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~------v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF 81 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPL------VITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF 81 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhcccc------ceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHH
Confidence 3456999999999999999999984321 0000000000001133466666555555554 78999999999999
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcC-CCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG-VPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~-~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
...+.-..+.++++++++|++.+......+.+.++...+ +| ++|++||.|+.+.. -.++++++++.-. ..
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a~-----ppe~i~e~l~~~~---~~ 152 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIP-VVVAINKQDLFDAL-----PPEKIREALKLEL---LS 152 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCC-EEEEeeccccCCCC-----CHHHHHHHHHhcc---CC
Confidence 999999999999999999999987777777888888888 67 88999999998731 1124555555432 24
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+|+|+++|..+ ++..+.++.+...
T Consensus 153 ~~vi~~~a~e~----------~~~~~~L~~ll~~ 176 (187)
T COG2229 153 VPVIEIDATEG----------EGARDQLDVLLLK 176 (187)
T ss_pred Cceeeeecccc----------hhHHHHHHHHHhh
Confidence 89999999875 3455556555544
No 203
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.77 E-value=1.2e-17 Score=136.00 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=96.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
+|+++|.+|+|||||+++|.+... ... ....+.+. ....+ .....+.+|||||+.++...+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~------~~~---------~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~ 62 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL------VTT---------IPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWK 62 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc------ccc---------cCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHH
Confidence 489999999999999999984311 000 00012222 11222 2346799999999999988888
Q ss_pred HhhhccCeEEEEEeCCCCCc-hhhHHHHHHH-H---HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH--hcCCCCC
Q 020176 147 TGAAQMDGGILVVSAPDGPM-PQTKEHILLA-R---QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS--FYKFPGD 219 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~-~---~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 219 (330)
..+..+|++++|+|+++... ......+..+ . ..+.| +++|+||+|+..... .+ ++...++ .+.. ..
T Consensus 63 ~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~i~~~~~~~~~~~-~~ 135 (160)
T cd04156 63 CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVP-VVLLANKQDLPGALT-AE----EITRRFKLKKYCS-DR 135 (160)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECcccccCcC-HH----HHHHHcCCcccCC-CC
Confidence 88899999999999987532 2222223222 1 14677 889999999864211 11 2222221 1111 13
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
.++++++||+++ .|+.+++++|.+
T Consensus 136 ~~~~~~~Sa~~~----------~gv~~~~~~i~~ 159 (160)
T cd04156 136 DWYVQPCSAVTG----------EGLAEAFRKLAS 159 (160)
T ss_pred cEEEEecccccC----------CChHHHHHHHhc
Confidence 468999999997 568888888754
No 204
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.77 E-value=9e-18 Score=139.80 Aligned_cols=161 Identities=15% Similarity=0.096 Sum_probs=105.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
+..++|+++|..++|||||++++............. +... .....++.....+.||||+|+++|.
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~--------------~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~ 67 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FENY-TASFEIDTQRIELSLWDTSGSPYYD 67 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCce--------------eeee-EEEEEECCEEEEEEEEECCCchhhH
Confidence 456799999999999999999998532111100000 1111 1122333344678999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhh--HHHHHHHHHc--CCCeEEEEEeeccCcChHHHH---------HHHHHHHHH
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVCFLNKVDLVEDEELL---------ELVEMELRE 209 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~--~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~---------~~~~~~~~~ 209 (330)
.....+++.+|++++|+|.++....+. ..++..+... +.| +++|.||+|+.+..... ....++..+
T Consensus 68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (182)
T cd04172 68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN 146 (182)
T ss_pred hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH
Confidence 888888999999999999987544333 2344444432 466 88999999986421100 122345667
Q ss_pred HHHhcCCCCCCccEEEeeccccccCCccccchhh-HHHHHHHHhh
Q 020176 210 LLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKA-ILKLMDAVDE 253 (330)
Q Consensus 210 ~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~-i~~ll~~l~~ 253 (330)
+.+.++. ++++++||+++ .+ +.++++.+..
T Consensus 147 ~a~~~~~----~~~~E~SAk~~----------~n~v~~~F~~~~~ 177 (182)
T cd04172 147 MAKQIGA----ATYIECSALQS----------ENSVRDIFHVATL 177 (182)
T ss_pred HHHHcCC----CEEEECCcCCC----------CCCHHHHHHHHHH
Confidence 7777664 58999999997 34 7777766654
No 205
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.77 E-value=1.5e-16 Score=136.88 Aligned_cols=185 Identities=19% Similarity=0.211 Sum_probs=124.9
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
..+...|+++|++|+|||||++.|.+..... ......|. +.. +...+.+++++||||+.
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~--------------~~~~~~g~-i~i----~~~~~~~i~~vDtPg~~-- 94 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ--------------NISDIKGP-ITV----VTGKKRRLTFIECPNDI-- 94 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC--------------cccccccc-EEE----EecCCceEEEEeCCchH--
Confidence 3455789999999999999999998532110 00011222 111 22356789999999964
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH-hcCCCCCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS-FYKFPGDE 220 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 220 (330)
..+...+..+|++++|+|+..+...++.+.+..+...++|.+++|+||+|+..+....+.+.+++++.+. .. + ..
T Consensus 95 -~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~-~--~~ 170 (225)
T cd01882 95 -NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEV-Y--QG 170 (225)
T ss_pred -HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhh-C--CC
Confidence 4555667889999999999999888888888999888999666699999998644434445556655332 22 2 23
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEee
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSI 276 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 276 (330)
.+++++||++... ........++..+...-+......+....|.++++..+
T Consensus 171 ~ki~~iSa~~~~~-----~~~~e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~~~ 221 (225)
T cd01882 171 AKLFYLSGIVHGR-----YPKTEIHNLARFISVMKFRPLNWRNSHPYVLADRMEDI 221 (225)
T ss_pred CcEEEEeeccCCC-----CCHHHHHHHHHHHHhCCCCCCeeecCCCeEEEeeeecc
Confidence 6899999998632 22233556666666655555555555666777776544
No 206
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.77 E-value=1.1e-17 Score=140.33 Aligned_cols=143 Identities=21% Similarity=0.162 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|..|+|||||+++|.+....... ....+.+.......++.....+.+|||||+.+|...+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSEST--------------KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhH
Confidence 37999999999999999999842111000 0001222222233333334567899999999998888
Q ss_pred HHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
...+..+|++++|+|+++...... ..++..+... +.| +++|+||+|+.+..... .++...+.+..+ +
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v~---~~~~~~~~~~~~-----~ 137 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVI-KVIVANKSDLVNNKVVD---SNIAKSFCDSLN-----I 137 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccCC---HHHHHHHHHHcC-----C
Confidence 888999999999999987433222 2233333332 355 88999999987532111 112233444433 5
Q ss_pred cEEEeecccc
Q 020176 222 PIIRGSATSA 231 (330)
Q Consensus 222 pv~~~Sa~~~ 231 (330)
+++++||+++
T Consensus 138 ~~~evSa~~~ 147 (188)
T cd04125 138 PFFETSAKQS 147 (188)
T ss_pred eEEEEeCCCC
Confidence 7999999986
No 207
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.77 E-value=6.2e-18 Score=138.63 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=99.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHHH
Q 020176 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMIT 147 (330)
Q Consensus 68 I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~ 147 (330)
|+++|..|+|||||+++|.+....... . ...|. ....++..+..+.+|||||+.+|...+..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~-----------~---pt~g~----~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESV-----------V---PTTGF----NSVAIPTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccc-----------c---ccCCc----ceEEEeeCCeEEEEEECCCCcchhHHHHH
Confidence 789999999999999999843111000 0 00011 12334556788999999999999988888
Q ss_pred hhhccCeEEEEEeCCCCCc-hhhHHHHHHHHH--cCCCeEEEEEeeccCcChHHHHHHHHHH--HHHHHHhcCCCCCCcc
Q 020176 148 GAAQMDGGILVVSAPDGPM-PQTKEHILLARQ--VGVPSLVCFLNKVDLVEDEELLELVEME--LRELLSFYKFPGDEIP 222 (330)
Q Consensus 148 ~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~--~~~p~iivviNK~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p 222 (330)
+++.+|++++|+|+++... ......+..+.. .++| +++|+||+|+..... .+.+.+. +..+.+ ...++
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~-----~~~~~ 136 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQDLPAARS-VQEIHKELELEPIAR-----GRRWI 136 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCCCC-HHHHHHHhCChhhcC-----CCceE
Confidence 9999999999999987432 222333333322 3677 889999999875321 1212111 122212 23478
Q ss_pred EEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 223 v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
++++||++.-+.. ..+++.++++.+.+
T Consensus 137 ~~~~Sa~~~~s~~----~~~~v~~~~~~~~~ 163 (164)
T cd04162 137 LQGTSLDDDGSPS----RMEAVKDLLSQLIN 163 (164)
T ss_pred EEEeeecCCCChh----HHHHHHHHHHHHhc
Confidence 9999999832211 12567788877654
No 208
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.77 E-value=8.8e-18 Score=138.42 Aligned_cols=161 Identities=15% Similarity=0.021 Sum_probs=101.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHh-cCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAE-EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
++.++|+++|.+|+|||||++++++.... .... ...+.........++.....+.+||++|...+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~--------------~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~ 67 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYS--------------PTIKPRYAVNTVEVYGQEKYLILREVGEDEVA 67 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCC--------------CccCcceEEEEEEECCeEEEEEEEecCCcccc
Confidence 35679999999999999999999843211 0000 00011122222333333457889999999988
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH-cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ-VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~-~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
......++..+|++++|+|+++....+. .+++..+.. .++| +++|+||+|+.+.... ...+..++.+.+++
T Consensus 68 ~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~---~~~~~~~~~~~~~~--- 140 (169)
T cd01892 68 ILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQR---YEVQPDEFCRKLGL--- 140 (169)
T ss_pred cccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCe-EEEEEEcccccccccc---cccCHHHHHHHcCC---
Confidence 7777777889999999999977422211 122332221 2567 8899999999653211 11123444555554
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
.+++++||+++ .++.++++.+.+.+
T Consensus 141 -~~~~~~Sa~~~----------~~v~~lf~~l~~~~ 165 (169)
T cd01892 141 -PPPLHFSSKLG----------DSSNELFTKLATAA 165 (169)
T ss_pred -CCCEEEEeccC----------ccHHHHHHHHHHHh
Confidence 24689999997 35777887776644
No 209
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.77 E-value=1.4e-17 Score=137.87 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|++|+|||||+++|.+.......... .+... .....++.....+.+|||||+++|....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t--------------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT--------------VFENY-VADIEVDGKQVELALWDTAGQEDYDRLR 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--------------cccce-EEEEEECCEEEEEEEEeCCCchhhhhcc
Confidence 48999999999999999999853211100000 01111 1122233334568999999999987766
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhH-H-HHHHHHH--cCCCeEEEEEeeccCcChHHHHHHH---------HHHHHHHHH
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTK-E-HILLARQ--VGVPSLVCFLNKVDLVEDEELLELV---------EMELRELLS 212 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~-~-~l~~~~~--~~~p~iivviNK~D~~~~~~~~~~~---------~~~~~~~~~ 212 (330)
...+..+|++++|+|.++....... + ++..+.. .++| +++|+||+|+.......+.+ ..+.+++.+
T Consensus 67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~ 145 (175)
T cd01870 67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 145 (175)
T ss_pred ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHH
Confidence 6777899999999999864222221 1 2233333 2677 88999999987643222211 123344444
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
..+. .+++++||+++ .++.++++++...
T Consensus 146 ~~~~----~~~~~~Sa~~~----------~~v~~lf~~l~~~ 173 (175)
T cd01870 146 KIGA----FGYMECSAKTK----------EGVREVFEMATRA 173 (175)
T ss_pred HcCC----cEEEEeccccC----------cCHHHHHHHHHHH
Confidence 4433 58999999987 4688888887653
No 210
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.77 E-value=9.8e-18 Score=135.78 Aligned_cols=152 Identities=19% Similarity=0.179 Sum_probs=97.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHHH
Q 020176 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMIT 147 (330)
Q Consensus 68 I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~ 147 (330)
|+++|++|+|||||+++|.+...... . .+...... ..+......+.+|||||+.+|...+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~-----------~-----~~t~~~~~--~~~~~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSED-----------T-----IPTVGFNM--RKVTKGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcC-----------c-----cCCCCcce--EEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 78999999999999999984311100 0 01111111 123344578999999999999988888
Q ss_pred hhhccCeEEEEEeCCCCCc-hhhHHHHHHHH----HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020176 148 GAAQMDGGILVVSAPDGPM-PQTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (330)
Q Consensus 148 ~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~----~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (330)
++..+|++++|+|+++... .+..+.+..+. ..++| +++|+||+|+...... + ++.+.+.........++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~~~~ 137 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGALSV-D----ELIEQMNLKSITDREVS 137 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCcCH-H----HHHHHhCcccccCCceE
Confidence 8999999999999986322 22233333332 24677 8899999998764221 1 11111111111123478
Q ss_pred EEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 223 v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
++++|++++ .++.++++++.+
T Consensus 138 ~~~~Sa~~~----------~gi~~l~~~l~~ 158 (159)
T cd04159 138 CYSISCKEK----------TNIDIVLDWLIK 158 (159)
T ss_pred EEEEEeccC----------CChHHHHHHHhh
Confidence 999999997 468888888754
No 211
>PLN03108 Rab family protein; Provisional
Probab=99.76 E-value=1.5e-17 Score=141.87 Aligned_cols=144 Identities=16% Similarity=0.123 Sum_probs=94.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
.++|+++|++|+|||||+++|+......... ...+.+.......+......+.+|||||++.|...
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~--------------~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~ 71 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------------LTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI 71 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------------CCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH
Confidence 4799999999999999999998431111000 00122222223333333356889999999999888
Q ss_pred HHHhhhccCeEEEEEeCCCCCchhhH-HHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~~~~-~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
+...++.+|++++|+|+++....+.. +++..+... ++| +++|.||+|+...... ..++..++.+..+
T Consensus 72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~---~~~~~~~~~~~~~----- 142 (210)
T PLN03108 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV---STEEGEQFAKEHG----- 142 (210)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccCC---CHHHHHHHHHHcC-----
Confidence 88888999999999999874333322 333333322 466 8899999999753211 1224445555544
Q ss_pred ccEEEeecccc
Q 020176 221 IPIIRGSATSA 231 (330)
Q Consensus 221 ~pv~~~Sa~~~ 231 (330)
++++++||+++
T Consensus 143 ~~~~e~Sa~~~ 153 (210)
T PLN03108 143 LIFMEASAKTA 153 (210)
T ss_pred CEEEEEeCCCC
Confidence 68999999986
No 212
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=1.6e-17 Score=141.79 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=99.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee-eCCeeEEEEeCCCchhhHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-TAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~i~iiDtPG~~~~~~ 143 (330)
.++|+++|.+|+|||||+++|++...... .+ ...+.........+. .....+.+|||||++.|..
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~---------~~-----~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~ 67 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV---------SD-----PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRS 67 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC---------CC-----ceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHH
Confidence 46899999999999999999984211000 00 000111111122221 2235789999999999988
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
....+++.+|++++|+|.++..... ..+++..+... ..+.+++|.||+|+...... ..++..++.+.++
T Consensus 68 ~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v---~~~~~~~~~~~~~---- 140 (211)
T cd04111 68 ITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQV---TREEAEKLAKDLG---- 140 (211)
T ss_pred HHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccccc---CHHHHHHHHHHhC----
Confidence 8888899999999999998743222 22333333322 22337889999999763221 1223444555543
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++.|.+.+
T Consensus 141 -~~~~e~Sak~g----------~~v~e~f~~l~~~~ 165 (211)
T cd04111 141 -MKYIETSARTG----------DNVEEAFELLTQEI 165 (211)
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 68999999986 34666666665543
No 213
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.76 E-value=1.2e-17 Score=141.08 Aligned_cols=156 Identities=17% Similarity=0.034 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCce--EEeEEEEeeeCCeeEEEEeCCCchhh--
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGIT--IATAHVEYETAKRHYAHVDCPGHADY-- 141 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t--~~~~~~~~~~~~~~i~iiDtPG~~~~-- 141 (330)
.+|+|+|.+|+|||||++++++....... .+.++ .......++.....+.||||||+.+|
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~----------------~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~ 64 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEY----------------IPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG 64 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCccc----------------CCccccccceeEEEECCEEEEEEEEeCCCcccCCc
Confidence 37999999999999999999842111000 00111 11112223333356889999996543
Q ss_pred ------HHHHHHhhhccCeEEEEEeCCCCCchhhH-HHHHHHHH------cCCCeEEEEEeeccCcChHHHHHHHHHHHH
Q 020176 142 ------VKNMITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQ------VGVPSLVCFLNKVDLVEDEELLELVEMELR 208 (330)
Q Consensus 142 ------~~~~~~~~~~~d~~l~vvda~~~~~~~~~-~~l~~~~~------~~~p~iivviNK~D~~~~~~~~~~~~~~~~ 208 (330)
.......+..+|++++|+|+++....+.. .++..+.. .++| +++|.||+|+...... ..+++.
T Consensus 65 ~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~Dl~~~~~~---~~~~~~ 140 (198)
T cd04142 65 TAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKRDQQRHRFA---PRHVLS 140 (198)
T ss_pred cchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECccccccccc---cHHHHH
Confidence 22234456789999999999875433322 22232322 3467 8899999999653211 111233
Q ss_pred HHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 209 ~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++.++. ..+|++++||+++ .++.++++.+....
T Consensus 141 ~~~~~~----~~~~~~e~Sak~g----------~~v~~lf~~i~~~~ 173 (198)
T cd04142 141 VLVRKS----WKCGYLECSAKYN----------WHILLLFKELLISA 173 (198)
T ss_pred HHHHHh----cCCcEEEecCCCC----------CCHHHHHHHHHHHh
Confidence 333322 2378999999997 35777777776544
No 214
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.76 E-value=1.7e-17 Score=155.48 Aligned_cols=137 Identities=20% Similarity=0.212 Sum_probs=96.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+|+|++ ...... ....|+|.+.....+..++..+.+|||||+.++.
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~------~~~aiv---------s~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~ 265 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLK------QDRAIV---------SDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA 265 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhC------CCCccc---------CCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch
Confidence 3457999999999999999999984 221111 1124777777666777778889999999975532
Q ss_pred H--------HHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 143 K--------NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 143 ~--------~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
. ....+++.+|++++|+|++++...... ++..+...++| +++|+||+|+... + . ..+.+.+
T Consensus 266 ~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~p-iIlV~NK~Dl~~~-~----~----~~~~~~~ 334 (442)
T TIGR00450 266 DFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKP-FILVLNKIDLKIN-S----L----EFFVSSK 334 (442)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCC-EEEEEECccCCCc-c----h----hhhhhhc
Confidence 2 234567889999999999886654444 55555556778 8899999999753 1 1 1122232
Q ss_pred CCCCCCccEEEeeccc
Q 020176 215 KFPGDEIPIIRGSATS 230 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~ 230 (330)
+ .|++++||++
T Consensus 335 ~-----~~~~~vSak~ 345 (442)
T TIGR00450 335 V-----LNSSNLSAKQ 345 (442)
T ss_pred C-----CceEEEEEec
Confidence 2 5789999987
No 215
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.76 E-value=1.4e-17 Score=143.24 Aligned_cols=149 Identities=15% Similarity=0.067 Sum_probs=98.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
....+|+++|..++|||+|+.++....+........ +.... ....++.....+.||||+|+++|.
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi--------------~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~ 75 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV--------------FENYT-AGLETEEQRVELSLWDTSGSPYYD 75 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCce--------------eeeeE-EEEEECCEEEEEEEEeCCCchhhH
Confidence 345799999999999999999998432111100000 11111 112233344678999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhh--HHHHHHHHHc--CCCeEEEEEeeccCcChHHH---------HHHHHHHHHH
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVCFLNKVDLVEDEEL---------LELVEMELRE 209 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~--~~~l~~~~~~--~~p~iivviNK~D~~~~~~~---------~~~~~~~~~~ 209 (330)
.....+++.+|++++|+|.++....+. ..++..+... +.| +|+|.||+|+...... .....++..+
T Consensus 76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~ 154 (232)
T cd04174 76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTR-ILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCA 154 (232)
T ss_pred HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccchhhhhccccCCcCCHHHHHH
Confidence 888888999999999999987544432 2344444432 566 8899999998642100 0122346677
Q ss_pred HHHhcCCCCCCccEEEeecccc
Q 020176 210 LLSFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 210 ~~~~~~~~~~~~pv~~~Sa~~~ 231 (330)
+.+.+++ .+++++||+++
T Consensus 155 ~a~~~~~----~~~~EtSAktg 172 (232)
T cd04174 155 LAKQLGA----EVYLECSAFTS 172 (232)
T ss_pred HHHHcCC----CEEEEccCCcC
Confidence 7777764 36999999986
No 216
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.76 E-value=9.9e-18 Score=143.27 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|.+|+|||||+++|+...... . ..|+.............+.||||||++.|....
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~------------~-------~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~ 61 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD------------T-------VSTVGGAFYLKQWGPYNISIWDTAGREQFHGLG 61 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC------------C-------CCccceEEEEEEeeEEEEEEEeCCCcccchhhH
Confidence 479999999999999999998421110 0 011111111122344678999999999998888
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhH-HHHHHHHH---cCCCeEEEEEeeccCcChH----------------HHHHHHHH
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQ---VGVPSLVCFLNKVDLVEDE----------------ELLELVEM 205 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~-~~l~~~~~---~~~p~iivviNK~D~~~~~----------------~~~~~~~~ 205 (330)
..+++.+|++|+|+|+++....... .++..+.. .++| +|+|.||+|+.... ...+...+
T Consensus 62 ~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~ 140 (220)
T cd04126 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL-FAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLE 140 (220)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccccccccccccccccccccCCHH
Confidence 8889999999999999875333332 33333332 2456 88999999997510 01112223
Q ss_pred HHHHHHHhcCC---------CCCCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 206 ELRELLSFYKF---------PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 206 ~~~~~~~~~~~---------~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
+...+.+..+. ....++++++||+++ .++.++++.+.+
T Consensus 141 e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg----------~~V~elf~~i~~ 187 (220)
T cd04126 141 DAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG----------YNVDELFEYLFN 187 (220)
T ss_pred HHHHHHHHhCccccccccccccccceEEEeeCCCC----------CCHHHHHHHHHH
Confidence 45555555431 012368999999996 235555555544
No 217
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.76 E-value=1.5e-17 Score=144.81 Aligned_cols=160 Identities=16% Similarity=0.066 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|..|+|||||+++++........ ..+. + ......+.+......+.||||+|+.+|....
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y---------~pTi-----~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~ 65 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQY---------TPTI-----E-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMR 65 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCC---------CCCh-----h-HhEEEEEEECCEEEEEEEEECCCChhhhHHH
Confidence 37999999999999999999843211100 0000 0 0111222233334678899999999987776
Q ss_pred HHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH------------cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ------------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~------------~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~ 212 (330)
..++..+|++|+|+|.++....+. ..++..+.. .++| +|+|+||+|+....+ ...+++.+++.
T Consensus 66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~Dl~~~~~---v~~~ei~~~~~ 141 (247)
T cd04143 66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKADRDFPRE---VQRDEVEQLVG 141 (247)
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCc-EEEEEECccchhccc---cCHHHHHHHHH
Confidence 777889999999999987433222 222223321 2567 889999999975221 11223444443
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
.. ..++++++||+++ .++.++++++......|
T Consensus 142 ~~----~~~~~~evSAktg----------~gI~elf~~L~~~~~~p 173 (247)
T cd04143 142 GD----ENCAYFEVSAKKN----------SNLDEMFRALFSLAKLP 173 (247)
T ss_pred hc----CCCEEEEEeCCCC----------CCHHHHHHHHHHHhccc
Confidence 21 2367999999997 45888888888765433
No 218
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.8e-17 Score=134.34 Aligned_cols=148 Identities=18% Similarity=0.142 Sum_probs=108.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+++|||.++-++....+....... -|+......+.++.....+.+|||.|+++|.
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sT--------------iGIDFk~kti~l~g~~i~lQiWDtaGQerf~ 75 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFIST--------------IGIDFKIKTIELDGKKIKLQIWDTAGQERFR 75 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccce--------------EEEEEEEEEEEeCCeEEEEEEEEcccchhHH
Confidence 45679999999999999999999854333222111 1444445555566666788999999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..+.++++.|+++++|+|.+....-. ...++..+... +++ .++|.||+|+.... +.-.++-+++...+|
T Consensus 76 ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~-~~LvGNK~D~~~~R---~V~~e~ge~lA~e~G--- 148 (207)
T KOG0078|consen 76 TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVV-KILVGNKCDLEEKR---QVSKERGEALAREYG--- 148 (207)
T ss_pred HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCc-EEEeeccccccccc---cccHHHHHHHHHHhC---
Confidence 99999999999999999998743333 33344444433 677 77899999998733 223446677788887
Q ss_pred CCccEEEeecccccc
Q 020176 219 DEIPIIRGSATSALQ 233 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~ 233 (330)
++++++||+++.|
T Consensus 149 --~~F~EtSAk~~~N 161 (207)
T KOG0078|consen 149 --IKFFETSAKTNFN 161 (207)
T ss_pred --CeEEEccccCCCC
Confidence 6799999999743
No 219
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.76 E-value=5.6e-17 Score=139.05 Aligned_cols=172 Identities=20% Similarity=0.198 Sum_probs=113.3
Q ss_pred cCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 60 ~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
+...+..+|+++|.||+|||||.|.++ |...+..+. +..+|.......+..+..+++|+||||..
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mi------g~kv~~vS~---------K~~TTr~~ilgi~ts~eTQlvf~DTPGlv 131 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMI------GQKVSAVSR---------KVHTTRHRILGIITSGETQLVFYDTPGLV 131 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhh------CCccccccc---------cccceeeeeeEEEecCceEEEEecCCccc
Confidence 334667899999999999999999999 544443332 23456666666677888999999999921
Q ss_pred ------------hhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHc-CCCeEEEEEeeccCcChHHHHHHHHHH
Q 020176 140 ------------DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GVPSLVCFLNKVDLVEDEELLELVEME 206 (330)
Q Consensus 140 ------------~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~-~~p~iivviNK~D~~~~~~~~~~~~~~ 206 (330)
.+.+....++..||++++|+|+++.-.......+..+... .+| -|+|+||+|........-.+.+.
T Consensus 132 s~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ip-s~lvmnkid~~k~k~~Ll~l~~~ 210 (379)
T KOG1423|consen 132 SKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIP-SILVMNKIDKLKQKRLLLNLKDL 210 (379)
T ss_pred ccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCC-ceeeccchhcchhhhHHhhhHHh
Confidence 1233455667789999999999963334444555555554 577 56899999998754332211111
Q ss_pred H---------HHHHHhcCCCC------------CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 207 L---------RELLSFYKFPG------------DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 207 ~---------~~~~~~~~~~~------------~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
+ .+..+.+...+ ..-.+|++||++| +|+++|-++|....|+
T Consensus 211 Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G----------~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 211 LTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYG----------EGIKDLKQYLMSQAPP 272 (379)
T ss_pred ccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccc----------cCHHHHHHHHHhcCCC
Confidence 1 11111111100 1234899999997 5788888888887653
No 220
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.76 E-value=1.7e-17 Score=137.99 Aligned_cols=155 Identities=21% Similarity=0.189 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|.+|+|||||+++|+........ .+.. +.. ......+......+.+|||||+.+|....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~--------~~t~------~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY--------YPTI------ENT-FSKIIRYKGQDYHLEIVDTAGQDEYSILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc--------Ccch------hhh-EEEEEEECCEEEEEEEEECCChHhhHHHH
Confidence 58999999999999999999842111000 0000 000 01112222233567899999999998888
Q ss_pred HHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
..++..+|++++|+|.++....+. ...+..+.. .+.| +++|+||+|+....... .++...+.+.++
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~---~~~~~~~~~~~~----- 137 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQVS---TEEGKELAESWG----- 137 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcCccC---HHHHHHHHHHcC-----
Confidence 888889999999999987443222 222222222 3567 88999999987532111 113344444433
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.+++++||+++ .++.++++++...
T Consensus 138 ~~~~~~Sa~~~----------~gv~~l~~~l~~~ 161 (180)
T cd04137 138 AAFLESSAREN----------ENVEEAFELLIEE 161 (180)
T ss_pred CeEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 67999999986 3466666655543
No 221
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.76 E-value=1.5e-17 Score=138.15 Aligned_cols=159 Identities=14% Similarity=0.074 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|..|+|||||++++............. +... .....++.....+.||||||+++|....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~ 66 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTV--------------FENY-TASFEIDEQRIELSLWDTSGSPYYDNVR 66 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCce--------------EEEE-EEEEEECCEEEEEEEEECCCchhhhhcc
Confidence 589999999999999999998532211100000 0011 1122233344678899999999998877
Q ss_pred HHhhhccCeEEEEEeCCCCCchhh--HHHHHHHHHc--CCCeEEEEEeeccCcChHHHH---------HHHHHHHHHHHH
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVCFLNKVDLVEDEELL---------ELVEMELRELLS 212 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~--~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~---------~~~~~~~~~~~~ 212 (330)
..+++.+|++|+|+|.++....+. ..++..+... +.| +++|.||+|+....... ....++..++.+
T Consensus 67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~ 145 (178)
T cd04131 67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK 145 (178)
T ss_pred hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCC-EEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH
Confidence 788899999999999987544333 2344444433 466 88999999986421100 112235666777
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
.++. .+++++||+++.+ ++.++++.+..
T Consensus 146 ~~~~----~~~~E~SA~~~~~---------~v~~~F~~~~~ 173 (178)
T cd04131 146 QLGA----EIYLECSAFTSEK---------SVRDIFHVATM 173 (178)
T ss_pred HhCC----CEEEECccCcCCc---------CHHHHHHHHHH
Confidence 7664 4799999999621 27777776654
No 222
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.7e-17 Score=127.05 Aligned_cols=159 Identities=21% Similarity=0.201 Sum_probs=116.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
-++|+++|..|+|||.|+.+++...+..|.+..+ |...-........+..++.||||+|+++|...
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgati--------------gvdfmiktvev~gekiklqiwdtagqerfrsi 72 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATI--------------GVDFMIKTVEVNGEKIKLQIWDTAGQERFRSI 72 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCcee--------------eeeEEEEEEEECCeEEEEEEeeccchHHHHHH
Confidence 4689999999999999999999988888876554 34444455566666788999999999999999
Q ss_pred HHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
+.++++.++++++|+|.+-.+.. -.-+++..+... .+- -|+|.||+|+.+..+..+.+.++..+.- +
T Consensus 73 tqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvl-kilvgnk~d~~drrevp~qigeefs~~q--------d 143 (213)
T KOG0095|consen 73 TQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVL-KILVGNKIDLADRREVPQQIGEEFSEAQ--------D 143 (213)
T ss_pred HHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceE-EEeeccccchhhhhhhhHHHHHHHHHhh--------h
Confidence 99999999999999999864433 334555555433 233 3578999999886555554544444332 1
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
.-++++||+.+ ++++.|+..+...+.
T Consensus 144 myfletsakea----------~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 144 MYFLETSAKEA----------DNVEKLFLDLACRLI 169 (213)
T ss_pred hhhhhhcccch----------hhHHHHHHHHHHHHH
Confidence 44788999986 457777766655443
No 223
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=3.2e-17 Score=153.86 Aligned_cols=142 Identities=21% Similarity=0.264 Sum_probs=91.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh---
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--- 140 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--- 140 (330)
....|+|+|.+|+|||||+|+|++.... + ...+++|+......+...+..++|+||||..+
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpk------I----------adypfTTl~P~lGvv~~~~~~f~laDtPGliegas 221 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPK------I----------ADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGAS 221 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCcc------c----------cccCcccccceEEEEEECCeEEEEEECCCCccccc
Confidence 3458999999999999999999843111 1 11235666666666666778899999999532
Q ss_pred ----hHHHHHHhhhccCeEEEEEeCCCC-----CchhhHH---HH-HHH----------HHcCCCeEEEEEeeccCcChH
Q 020176 141 ----YVKNMITGAAQMDGGILVVSAPDG-----PMPQTKE---HI-LLA----------RQVGVPSLVCFLNKVDLVEDE 197 (330)
Q Consensus 141 ----~~~~~~~~~~~~d~~l~vvda~~~-----~~~~~~~---~l-~~~----------~~~~~p~iivviNK~D~~~~~ 197 (330)
+....+..+..+|++++|||++.. +...... .| .+. ...+.| +|+|+||+|+.+..
T Consensus 222 ~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP-~IVVlNKiDL~da~ 300 (500)
T PRK12296 222 EGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERP-RLVVLNKIDVPDAR 300 (500)
T ss_pred hhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCC-EEEEEECccchhhH
Confidence 223345556779999999999741 1111111 11 111 123577 77999999997644
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccEEEeecccc
Q 020176 198 ELLELVEMELRELLSFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~ 231 (330)
+..+ .+...++..+ ++++++||+++
T Consensus 301 el~e----~l~~~l~~~g-----~~Vf~ISA~tg 325 (500)
T PRK12296 301 ELAE----FVRPELEARG-----WPVFEVSAASR 325 (500)
T ss_pred HHHH----HHHHHHHHcC-----CeEEEEECCCC
Confidence 3322 2333344333 68999999985
No 224
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.76 E-value=9e-18 Score=138.86 Aligned_cols=155 Identities=17% Similarity=0.120 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEe--EEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~--~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
++|+++|.+|+|||||+.++......... ..+..+. ....++.....+.+|||||+.+|..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 63 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEY-----------------VPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK 63 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------------CCceeeeeeEEEEECCEEEEEEEEECCCChhhcc
Confidence 47999999999999999998742111000 0111111 1222333345788999999999887
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhh--HHHHHHHHH--cCCCeEEEEEeeccCcChHHHH---------HHHHHHHHHH
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQ--VGVPSLVCFLNKVDLVEDEELL---------ELVEMELREL 210 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~--~~~l~~~~~--~~~p~iivviNK~D~~~~~~~~---------~~~~~~~~~~ 210 (330)
.+..+++.+|++++|+|.++....+. ..++..+.. .++| +++|+||+|+....... ....++...+
T Consensus 64 ~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (173)
T cd04130 64 LRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAP-IILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKAL 142 (173)
T ss_pred ccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHH
Confidence 77778889999999999987543332 234444443 2567 88999999997532211 1111234455
Q ss_pred HHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHh
Q 020176 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVD 252 (330)
Q Consensus 211 ~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~ 252 (330)
.+..+. .+++++||+++ .++.++++.+.
T Consensus 143 a~~~~~----~~~~e~Sa~~~----------~~v~~lf~~~~ 170 (173)
T cd04130 143 AEKIGA----CEYIECSALTQ----------KNLKEVFDTAI 170 (173)
T ss_pred HHHhCC----CeEEEEeCCCC----------CCHHHHHHHHH
Confidence 555543 48999999997 45888887654
No 225
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1.6e-16 Score=148.15 Aligned_cols=131 Identities=28% Similarity=0.392 Sum_probs=107.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCcc-ceeeccccCCChhhhhcCceEEeEEEEe-----eeCCeeEEEEeCC
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKA-KAIAFDEIDKAPEEKKRGITIATAHVEY-----ETAKRHYAHVDCP 136 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~-~~~~~~~~~~~~~e~~~g~t~~~~~~~~-----~~~~~~i~iiDtP 136 (330)
...++|+++||-.+|||+|+..|.......... ........|....|+++|+++......+ ....+-++|+|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 456899999999999999999997543332211 1112235678889999999998754433 2234668999999
Q ss_pred CchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
||.+|..++...++.+|++++|||+.+|+.-++...++.+-+.+.| +++|+||+|+.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~-i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLP-IVVVINKVDRL 262 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCc-EEEEEehhHHH
Confidence 9999999999999999999999999999999999999999999999 88999999975
No 226
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.75 E-value=2.3e-17 Score=139.53 Aligned_cols=158 Identities=15% Similarity=0.083 Sum_probs=97.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
+|+++|.+|+|||||+++|+........ .+.. .......+.+......+.||||||+.+|.....
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~-----------~~t~----~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~ 65 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKY-----------RRTV----EEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRK 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccC-----------CCch----hhheeEEEEECCEEEEEEEEECCCchhhhHHHH
Confidence 5899999999999999999843211000 0000 001111222222235788999999999888777
Q ss_pred HhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 147 TGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
.++..+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+........ .++..+.... . ...
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~~v~--~~~~~~~~~~-~---~~~ 138 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVP-IVVVGNKADSLEEERQVP--AKDALSTVEL-D---WNC 138 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEcccccccccccc--HHHHHHHHHh-h---cCC
Confidence 78889999999999987433222 222222222 3678 889999999976321111 1111111211 1 126
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+++++||+++ .++.++++++...+.
T Consensus 139 ~~~~~Sa~~g----------~gv~~l~~~l~~~~~ 163 (198)
T cd04147 139 GFVETSAKDN----------ENVLEVFKELLRQAN 163 (198)
T ss_pred cEEEecCCCC----------CCHHHHHHHHHHHhh
Confidence 7999999997 468888888877654
No 227
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.75 E-value=1.5e-17 Score=136.34 Aligned_cols=155 Identities=18% Similarity=0.202 Sum_probs=95.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh-hHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD-YVKNM 145 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~-~~~~~ 145 (330)
+|+++|.+|+|||||+++++..... +. ...... +.......++.....+.||||||+.. +....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~-~~--------~~~t~~------~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 65 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI-GE--------YDPNLE------SLYSRQVTIDGEQVSLEILDTAGQQQADTEQL 65 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc-cc--------cCCChH------HhceEEEEECCEEEEEEEEECCCCcccccchH
Confidence 4899999999999999999742110 00 000000 11111222333345688999999885 34456
Q ss_pred HHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH-----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~-----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
...++.+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+...... ..++...+.+.++
T Consensus 66 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~~~~~~~~~---- 137 (165)
T cd04146 66 ERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKADLLHYRQV---STEEGEKLASELG---- 137 (165)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhCcc---CHHHHHHHHHHcC----
Confidence 677889999999999987543332 222333332 2677 8899999998643211 1123344444443
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.+++++||+++. .++.++++.+...
T Consensus 138 -~~~~e~Sa~~~~---------~~v~~~f~~l~~~ 162 (165)
T cd04146 138 -CLFFEVSAAEDY---------DGVHSVFHELCRE 162 (165)
T ss_pred -CEEEEeCCCCCc---------hhHHHHHHHHHHH
Confidence 579999999862 2578888877654
No 228
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.75 E-value=3.3e-17 Score=133.14 Aligned_cols=154 Identities=21% Similarity=0.170 Sum_probs=100.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
||+++|++|+|||||+++|++...... ..... . ........+......+.+||+||+.++.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~---------~~~~~--~----~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEE---------YDPTI--E----DSYRKTIVVDGETYTLDILDTAGQEEFSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcC---------cCCCh--h----HeEEEEEEECCEEEEEEEEECCChHHHHHHHH
Confidence 589999999999999999984321100 00000 0 11111122222245789999999999888888
Q ss_pred HhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 147 TGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
..+..+|++++|+|.++... .....++..+.. .+.| +++|+||+|+..... ...+++..+.+.++ .
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~-----~ 136 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLENERQ---VSKEEGKALAKEWG-----C 136 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCcccccce---ecHHHHHHHHHHcC-----C
Confidence 88899999999999976432 222333333322 2466 889999999986321 12234555555544 6
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
|++++|++++ .++.+++++|...
T Consensus 137 ~~~~~S~~~~----------~~i~~l~~~l~~~ 159 (160)
T cd00876 137 PFIETSAKDN----------INIDEVFKLLVRE 159 (160)
T ss_pred cEEEeccCCC----------CCHHHHHHHHHhh
Confidence 8999999986 4688888888754
No 229
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.75 E-value=5.5e-17 Score=131.12 Aligned_cols=154 Identities=25% Similarity=0.241 Sum_probs=101.6
Q ss_pred EEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC-CeeEEEEeCCCchhhH------
Q 020176 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHADYV------ 142 (330)
Q Consensus 70 v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~~~------ 142 (330)
++|++|+|||||+++|++..... .....+.+.......+... ...+.+|||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI---------------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc---------------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH
Confidence 58999999999999998432111 0011233333333333333 5689999999976643
Q ss_pred -HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 143 -KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 143 -~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
..+...++.+|++++|+|+..........+.......+.| +++|+||+|+........... ... .. .......
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~-~~~-~~---~~~~~~~ 139 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKP-VLLVLNKIDLLPEEEEEELLE-LRL-LI---LLLLLGL 139 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCe-EEEEEEccccCChhhHHHHHH-HHH-hh---cccccCC
Confidence 3445567889999999999987666665555666667888 889999999997543322211 011 11 1122458
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
|++++||+++ .++.++++++...
T Consensus 140 ~~~~~sa~~~----------~~v~~l~~~l~~~ 162 (163)
T cd00880 140 PVIAVSALTG----------EGIDELREALIEA 162 (163)
T ss_pred ceEEEeeecc----------CCHHHHHHHHHhh
Confidence 9999999986 3588888887653
No 230
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=6.5e-17 Score=149.92 Aligned_cols=151 Identities=21% Similarity=0.265 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC-CeeEEEEeCCCchh----
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHAD---- 140 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~---- 140 (330)
..|+++|.+|||||||+++|++...... ..+.+|.......+... +..++|+||||..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa----------------~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~ 222 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIA----------------NYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE 222 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccc----------------cCCcceeceEEEEEEEeCCceEEEEECCCCcccccc
Confidence 3899999999999999999984321111 11245555554445444 67899999999632
Q ss_pred ---hHHHHHHhhhccCeEEEEEeCCCC----CchhhHHHHHHHHH-----cCCCeEEEEEeeccCcChHHHHHHHHHHHH
Q 020176 141 ---YVKNMITGAAQMDGGILVVSAPDG----PMPQTKEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVEMELR 208 (330)
Q Consensus 141 ---~~~~~~~~~~~~d~~l~vvda~~~----~~~~~~~~l~~~~~-----~~~p~iivviNK~D~~~~~~~~~~~~~~~~ 208 (330)
+....+..+..+|++++|+|++.. +......+...+.. .++| +++|+||+|+....+ .+.
T Consensus 223 ~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP-~IVV~NK~DL~~~~e-------~l~ 294 (424)
T PRK12297 223 GVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERP-QIVVANKMDLPEAEE-------NLE 294 (424)
T ss_pred cchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCc-EEEEEeCCCCcCCHH-------HHH
Confidence 233445556679999999999753 11222233333333 3567 778999999854321 233
Q ss_pred HHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 209 ~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++.+.++ .+++++||+++ .++.+|++++.+.+
T Consensus 295 ~l~~~l~-----~~i~~iSA~tg----------eGI~eL~~~L~~~l 326 (424)
T PRK12297 295 EFKEKLG-----PKVFPISALTG----------QGLDELLYAVAELL 326 (424)
T ss_pred HHHHHhC-----CcEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 3344433 57999999986 45777777666554
No 231
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.74 E-value=4.7e-17 Score=134.55 Aligned_cols=150 Identities=23% Similarity=0.245 Sum_probs=92.8
Q ss_pred EEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC-CeeEEEEeCCCchh-------h
Q 020176 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHAD-------Y 141 (330)
Q Consensus 70 v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~-------~ 141 (330)
++|++|+|||||+|+|++... . . ....++|.......+... +..+.||||||+.+ +
T Consensus 1 iiG~~~~GKStll~~l~~~~~------~-~---------~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP------K-V---------ANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc------c-c---------cCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCc
Confidence 589999999999999984311 0 0 001233443333334455 77899999999743 2
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCC------ch-hhHHHHHHHH----------HcCCCeEEEEEeeccCcChHHHHHHHH
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGP------MP-QTKEHILLAR----------QVGVPSLVCFLNKVDLVEDEELLELVE 204 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~------~~-~~~~~l~~~~----------~~~~p~iivviNK~D~~~~~~~~~~~~ 204 (330)
...+...+..+|++++|+|+.+.. .. ....+...+. ..++| +++|+||+|+.......+..
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~- 142 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP-VIYVLNKIDLDDAEELEEEL- 142 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC-eEEEEEchhcCchhHHHHHH-
Confidence 224455677899999999998752 11 1122222222 13677 88999999998754322211
Q ss_pred HHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 205 MELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 205 ~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
...... ....+++++||+++ .++.++++.+...
T Consensus 143 --~~~~~~-----~~~~~~~~~Sa~~~----------~gl~~l~~~l~~~ 175 (176)
T cd01881 143 --VRELAL-----EEGAEVVPISAKTE----------EGLDELIRAIYEL 175 (176)
T ss_pred --HHHHhc-----CCCCCEEEEehhhh----------cCHHHHHHHHHhh
Confidence 111111 13367999999987 4688888887653
No 232
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.74 E-value=5.7e-17 Score=134.28 Aligned_cols=159 Identities=20% Similarity=0.196 Sum_probs=109.6
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (330)
...+..+|+++|..|||||||+++|... ..... ..|.......+...+..+.+||.+|+..
T Consensus 10 ~~~~~~~ililGl~~sGKTtll~~l~~~-----~~~~~--------------~pT~g~~~~~i~~~~~~~~~~d~gG~~~ 70 (175)
T PF00025_consen 10 SKKKEIKILILGLDGSGKTTLLNRLKNG-----EISET--------------IPTIGFNIEEIKYKGYSLTIWDLGGQES 70 (175)
T ss_dssp TTTSEEEEEEEESTTSSHHHHHHHHHSS-----SEEEE--------------EEESSEEEEEEEETTEEEEEEEESSSGG
T ss_pred ccCcEEEEEEECCCccchHHHHHHhhhc-----ccccc--------------CcccccccceeeeCcEEEEEEecccccc
Confidence 3467789999999999999999999731 11110 1122223344556788999999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCC-chhhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~-~~~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
+...+..++..+|++|||||+++.. ..+..+.+..+.. .++| +++++||.|+.+.... +++.+.+....
T Consensus 71 ~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~~~~~-----~~i~~~l~l~~ 144 (175)
T PF00025_consen 71 FRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIP-ILILANKQDLPDAMSE-----EEIKEYLGLEK 144 (175)
T ss_dssp GGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTTSSTH-----HHHHHHTTGGG
T ss_pred ccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccce-EEEEeccccccCcchh-----hHHHhhhhhhh
Confidence 8888889999999999999998732 2334444443322 2567 8899999998763211 13333333222
Q ss_pred CC-CCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 216 FP-GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 216 ~~-~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+. ...+.++.+||.++ +|+.+.+++|.+.
T Consensus 145 l~~~~~~~v~~~sa~~g----------~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 145 LKNKRPWSVFSCSAKTG----------EGVDEGLEWLIEQ 174 (175)
T ss_dssp TTSSSCEEEEEEBTTTT----------BTHHHHHHHHHHH
T ss_pred cccCCceEEEeeeccCC----------cCHHHHHHHHHhc
Confidence 32 45688999999987 5688888887653
No 233
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.73 E-value=5.1e-17 Score=139.61 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|.+|+|||||+++++...... .. . +...+.........++.....+.||||||++.+...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~-----~~---~-----~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~- 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDD-----HA---Y-----DASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTED- 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCc-----cC---c-----CCCccccceEEEEEECCEEEEEEEEeCCCcchHHHh-
Confidence 379999999999999999997321110 00 0 000011122223334444567899999999844332
Q ss_pred HHhhh-ccCeEEEEEeCCCCCchh-hHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 146 ITGAA-QMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 146 ~~~~~-~~d~~l~vvda~~~~~~~-~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
..+. .+|++++|+|+++..... ..+++..+.. .++| +|+|.||+|+....+.. .++..++....+
T Consensus 67 -~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~~v~---~~~~~~~a~~~~---- 137 (221)
T cd04148 67 -SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP-IILVGNKSDLARSREVS---VQEGRACAVVFD---- 137 (221)
T ss_pred -HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhccccceec---HHHHHHHHHHcC----
Confidence 3445 899999999998743322 2334444433 3567 88999999997633211 112333444433
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++...+
T Consensus 138 -~~~~e~SA~~~----------~gv~~l~~~l~~~~ 162 (221)
T cd04148 138 -CKFIETSAGLQ----------HNVDELLEGIVRQI 162 (221)
T ss_pred -CeEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 57999999986 35777777777655
No 234
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=8.1e-17 Score=128.27 Aligned_cols=146 Identities=17% Similarity=0.111 Sum_probs=106.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
..+++.++|..|+|||.|+-+++...+..-.. ..-|+......+.++....++++|||.|++.|..
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd--------------~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frs 70 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD--------------LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRS 70 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccc--------------ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHH
Confidence 34689999999999999999998532221111 1113444444555666677899999999999999
Q ss_pred HHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHHcCCCe--EEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQVGVPS--LVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~~~~p~--iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
.+.++++.+.++|+|+|.+..... ....+|.-++..+-++ ++++.||+|+.... +.-+++-+.+.++.|+
T Consensus 71 v~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR---~Vs~EEGeaFA~ehgL---- 143 (216)
T KOG0098|consen 71 VTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR---EVSKEEGEAFAREHGL---- 143 (216)
T ss_pred HHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc---cccHHHHHHHHHHcCc----
Confidence 999999999999999999875443 3344555566554332 66778999998754 3345577888888774
Q ss_pred ccEEEeecccc
Q 020176 221 IPIIRGSATSA 231 (330)
Q Consensus 221 ~pv~~~Sa~~~ 231 (330)
+++.+||+++
T Consensus 144 -ifmETSakt~ 153 (216)
T KOG0098|consen 144 -IFMETSAKTA 153 (216)
T ss_pred -eeehhhhhhh
Confidence 6889999997
No 235
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.73 E-value=4.6e-17 Score=137.33 Aligned_cols=150 Identities=14% Similarity=0.058 Sum_probs=97.9
Q ss_pred EcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHHHhhh
Q 020176 71 IGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAA 150 (330)
Q Consensus 71 ~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~ 150 (330)
+|..|+|||||+++++......... ..-|.+.....+.++.....+.||||||+++|...+..+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~--------------~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYV--------------ATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCC--------------CceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhc
Confidence 5999999999999998321110000 00122232233333444578899999999999988888999
Q ss_pred ccCeEEEEEeCCCCCchhhH-HHHHHHHH--cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEee
Q 020176 151 QMDGGILVVSAPDGPMPQTK-EHILLARQ--VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGS 227 (330)
Q Consensus 151 ~~d~~l~vvda~~~~~~~~~-~~l~~~~~--~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~S 227 (330)
.+|++|+|+|+++....+.. .++..+.. .++| +++|.||+|+.... . ..+.+ .+.+.. .++++++|
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~-v---~~~~~-~~~~~~-----~~~~~e~S 135 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDVKDRK-V---KAKSI-TFHRKK-----NLQYYDIS 135 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC-EEEEEECccccccc-C---CHHHH-HHHHHc-----CCEEEEEe
Confidence 99999999999986544333 33444444 3577 88999999986421 1 01111 233332 37899999
Q ss_pred ccccccCCccccchhhHHHHHHHHhhhC
Q 020176 228 ATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 228 a~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
|+++ .++.++++++...+
T Consensus 136 Ak~~----------~~v~~~F~~l~~~i 153 (200)
T smart00176 136 AKSN----------YNFEKPFLWLARKL 153 (200)
T ss_pred CCCC----------CCHHHHHHHHHHHH
Confidence 9997 35777777776544
No 236
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.73 E-value=3.4e-16 Score=128.07 Aligned_cols=155 Identities=23% Similarity=0.346 Sum_probs=100.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh-------
Q 020176 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD------- 140 (330)
Q Consensus 68 I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~------- 140 (330)
|+++|.+|+|||||++.|++. ..... .....+.|........+ ..++++||||+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~-----~~~~~---------~~~~~~~t~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~ 64 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNR-----KKLAR---------TSKTPGKTQLINFFNVN---DKFRLVDLPGYGYAKVSKEV 64 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcC-----Cceee---------ecCCCCcceeEEEEEcc---CeEEEecCCCccccccCHHH
Confidence 789999999999999999831 00000 01112334333333222 3899999999543
Q ss_pred ---hHHHHHHhh---hccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 141 ---YVKNMITGA---AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 141 ---~~~~~~~~~---~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
+......++ ..++++++++|..........+.+..+...+.| +++++||+|+....+. ......+...++..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~-vi~v~nK~D~~~~~~~-~~~~~~~~~~l~~~ 142 (170)
T cd01876 65 KEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIP-FLVVLTKADKLKKSEL-AKALKEIKKELKLF 142 (170)
T ss_pred HHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCC-EEEEEEchhcCChHHH-HHHHHHHHHHHHhc
Confidence 222222223 346789999999877666666677778888888 8889999999764433 22333444444421
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
....+++++||+++ .++.++++++.++
T Consensus 143 ---~~~~~~~~~Sa~~~----------~~~~~l~~~l~~~ 169 (170)
T cd01876 143 ---EIDPPIILFSSLKG----------QGIDELRALIEKW 169 (170)
T ss_pred ---cCCCceEEEecCCC----------CCHHHHHHHHHHh
Confidence 13378999999986 4588888887764
No 237
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.73 E-value=1.7e-16 Score=135.75 Aligned_cols=159 Identities=13% Similarity=0.090 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|..|+|||+|+.++.+..+....... .+.... ....++.....+.||||+|+++|....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pT--------------i~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~ 66 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPT--------------VFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVR 66 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCc--------------cccceE-EEEEECCEEEEEEEEeCCCcHHHHHHh
Confidence 58999999999999999999843211100000 011111 122233344678899999999999888
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhH-HHHH-HHHH--cCCCeEEEEEeeccCcChHHHHH---------HHHHHHHHHHH
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTK-EHIL-LARQ--VGVPSLVCFLNKVDLVEDEELLE---------LVEMELRELLS 212 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~-~~l~-~~~~--~~~p~iivviNK~D~~~~~~~~~---------~~~~~~~~~~~ 212 (330)
..+++.+|++|+|+|.++....+.. ..|. .... .++| +|+|.||+|+........ ...++...+.+
T Consensus 67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak 145 (222)
T cd04173 67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAK-VVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAK 145 (222)
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHH
Confidence 8889999999999999875333222 2232 2222 2567 889999999975321111 11234556666
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
.++. ++++++||+++.+ ++.++++....
T Consensus 146 ~~~~----~~y~E~SAk~~~~---------~V~~~F~~~~~ 173 (222)
T cd04173 146 QVGA----VSYVECSSRSSER---------SVRDVFHVATV 173 (222)
T ss_pred HcCC----CEEEEcCCCcCCc---------CHHHHHHHHHH
Confidence 6654 5899999998621 26666655444
No 238
>PRK11058 GTPase HflX; Provisional
Probab=99.72 E-value=2e-16 Score=147.59 Aligned_cols=151 Identities=21% Similarity=0.199 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC-eeEEEEeCCCchhh---
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHADY--- 141 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~~--- 141 (330)
++|+++|.+|+|||||+|+|++ ...... ...+.|.+.....+...+ ..+.|+||||+.+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~------~~~~v~----------~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~ 261 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITE------ARVYAA----------DQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPH 261 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhC------Cceeec----------cCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCH
Confidence 5899999999999999999984 221110 112344444433343333 37899999997321
Q ss_pred -----HHHHHHhhhccCeEEEEEeCCCCCchhhH----HHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH
Q 020176 142 -----VKNMITGAAQMDGGILVVSAPDGPMPQTK----EHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (330)
Q Consensus 142 -----~~~~~~~~~~~d~~l~vvda~~~~~~~~~----~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~ 212 (330)
...+...+..+|++|+|+|+++....... +.+..+...++| +++|+||+|+..... ..+ .. .
T Consensus 262 ~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~p-vIiV~NKiDL~~~~~--~~~----~~--~ 332 (426)
T PRK11058 262 DLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIP-TLLVMNKIDMLDDFE--PRI----DR--D 332 (426)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCC-EEEEEEcccCCCchh--HHH----HH--H
Confidence 22344556789999999999886443332 223333334577 889999999975321 111 11 1
Q ss_pred hcCCCCCCcc-EEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 213 FYKFPGDEIP-IIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 213 ~~~~~~~~~p-v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
..+ .| ++++||+++ .|+.+|++++...+.
T Consensus 333 ~~~-----~~~~v~ISAktG----------~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 333 EEN-----KPIRVWLSAQTG----------AGIPLLFQALTERLS 362 (426)
T ss_pred hcC-----CCceEEEeCCCC----------CCHHHHHHHHHHHhh
Confidence 112 23 588999997 468889998888764
No 239
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.71 E-value=1.1e-16 Score=124.34 Aligned_cols=145 Identities=14% Similarity=0.062 Sum_probs=104.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
..++|.++|.+|+|||+|+-+++...++...... -|+........++....++.||||+|+++|..
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~t--------------IGvDFkvk~m~vdg~~~KlaiWDTAGqErFRt 75 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTT--------------IGVDFKVKVMQVDGKRLKLAIWDTAGQERFRT 75 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCce--------------eeeeEEEEEEEEcCceEEEEEEeccchHhhhc
Confidence 3579999999999999999999854433322221 15555666677777778999999999999999
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhhHHHH-HHHHHc----CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHI-LLARQV----GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~~~~l-~~~~~~----~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
.+.++++.|.++|+|+|.+........++| ..+... ++- .++|.||+|...+. ..-.++-..+.+.+.
T Consensus 76 LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~dii-kmlVgNKiDkes~R---~V~reEG~kfAr~h~--- 148 (209)
T KOG0080|consen 76 LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDII-KMLVGNKIDKESER---VVDREEGLKFARKHR--- 148 (209)
T ss_pred cCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHh-Hhhhcccccchhcc---cccHHHHHHHHHhhC---
Confidence 999999999999999999875544444444 334333 344 34789999976422 222345566666654
Q ss_pred CCccEEEeecccc
Q 020176 219 DEIPIIRGSATSA 231 (330)
Q Consensus 219 ~~~pv~~~Sa~~~ 231 (330)
+-++++||++.
T Consensus 149 --~LFiE~SAkt~ 159 (209)
T KOG0080|consen 149 --CLFIECSAKTR 159 (209)
T ss_pred --cEEEEcchhhh
Confidence 56999999996
No 240
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.1e-16 Score=149.81 Aligned_cols=154 Identities=21% Similarity=0.291 Sum_probs=112.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh---
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY--- 141 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~--- 141 (330)
..+|+++|+||+|||||.|+|++.....|. | +|.|+......+...++++.++|+||.-.+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgN------w----------pGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~ 66 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGN------W----------PGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAY 66 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecC------C----------CCeeEEEEEEEEEecCceEEEEeCCCcCCCCCC
Confidence 356999999999999999999954333332 2 389999999999999999999999993221
Q ss_pred ---HHHHHHhh--hccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 142 ---VKNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 142 ---~~~~~~~~--~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
.+-+..++ ..+|+++-|+||++ .......--++.++|+| +++++|++|...... ++-+.+++-+.+|
T Consensus 67 S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p-~ilaLNm~D~A~~~G----i~ID~~~L~~~LG- 138 (653)
T COG0370 67 SEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIP-MILALNMIDEAKKRG----IRIDIEKLSKLLG- 138 (653)
T ss_pred CchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCC-eEEEeccHhhHHhcC----CcccHHHHHHHhC-
Confidence 12222223 25799999999976 22333334556788999 889999999876422 2224455556666
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+|++++||+++ .|++++++.+....+
T Consensus 139 ----vPVv~tvA~~g----------~G~~~l~~~i~~~~~ 164 (653)
T COG0370 139 ----VPVVPTVAKRG----------EGLEELKRAIIELAE 164 (653)
T ss_pred ----CCEEEEEeecC----------CCHHHHHHHHHHhcc
Confidence 79999999997 568888888877554
No 241
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.69 E-value=3.9e-16 Score=127.44 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=103.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
||+++|..++|||||+++|.+....... ....|.........++.....+.|||++|+++|.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENY--------------IPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSS--------------ETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccc--------------cccccccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999853211110 00112333333333444446789999999999988777
Q ss_pred HhhhccCeEEEEEeCCCCCch-hhHHHHHHHHHcC--CCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccE
Q 020176 147 TGAAQMDGGILVVSAPDGPMP-QTKEHILLARQVG--VPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPI 223 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~~~--~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 223 (330)
..+..+|++++|+|.++...- ....++..+.... .++++++.||.|+....+. -.++..++.+.++ .++
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v---~~~~~~~~~~~~~-----~~~ 138 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREV---SVEEAQEFAKELG-----VPY 138 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSS---CHHHHHHHHHHTT-----SEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeeeccccccccccc---hhhHHHHHHHHhC-----CEE
Confidence 888899999999999873322 2234444444332 2448899999998863211 1235566677654 789
Q ss_pred EEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 224 IRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 224 ~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
+++||+.+ .++.+++..+.+
T Consensus 139 ~e~Sa~~~----------~~v~~~f~~~i~ 158 (162)
T PF00071_consen 139 FEVSAKNG----------ENVKEIFQELIR 158 (162)
T ss_dssp EEEBTTTT----------TTHHHHHHHHHH
T ss_pred EEEECCCC----------CCHHHHHHHHHH
Confidence 99999986 357777766654
No 242
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.69 E-value=5.2e-16 Score=126.33 Aligned_cols=151 Identities=18% Similarity=0.160 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|..|+|||||+.+++....... . .+. .+. . .....++.....+.+|||+|+++.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~---------~--~~~---~~~-~-~~~i~~~~~~~~l~i~D~~g~~~~---- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL---------E--SPE---GGR-F-KKEVLVDGQSHLLLIRDEGGAPDA---- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC---------C--CCC---ccc-e-EEEEEECCEEEEEEEEECCCCCch----
Confidence 3799999999999999999874211100 0 000 011 1 112233333356899999999752
Q ss_pred HHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc----CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV----GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~----~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
.+.+.+|++++|+|.++....+. ..++..+... ++| +++|.||+|+..... .+...++.+++.+..+ .
T Consensus 61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~-~~v~~~~~~~~~~~~~----~ 133 (158)
T cd04103 61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIP-LILVGTQDAISESNP-RVIDDARARQLCADMK----R 133 (158)
T ss_pred -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcCC-cccCHHHHHHHHHHhC----C
Confidence 34567999999999998555444 3444444432 356 889999999853110 0111223344444432 3
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
++++++||+++ .+++++++.+.+
T Consensus 134 ~~~~e~SAk~~----------~~i~~~f~~~~~ 156 (158)
T cd04103 134 CSYYETCATYG----------LNVERVFQEAAQ 156 (158)
T ss_pred CcEEEEecCCC----------CCHHHHHHHHHh
Confidence 68999999997 458888887764
No 243
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.69 E-value=7.5e-16 Score=130.05 Aligned_cols=166 Identities=19% Similarity=0.155 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh-----
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD----- 140 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~----- 140 (330)
++|+++|.+|+|||||+|+|++..... ..... .. ...++.....+.. .....+.+|||||..+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~-~~~~~----~~------~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~ 69 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEE-EGAAP----TG------VVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPP 69 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCC-CCccc----cC------ccccccCceeeec-CCCCCceEEeCCCCCcccCCH
Confidence 589999999999999999998532110 00000 00 0001111111111 1134689999999743
Q ss_pred --hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh------------HHHHHHHHHH
Q 020176 141 --YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED------------EELLELVEME 206 (330)
Q Consensus 141 --~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~------------~~~~~~~~~~ 206 (330)
|... ..+..+|.+++|.+ ..+......++..+...+.| +++|+||+|+..+ ++..+.+.+.
T Consensus 70 ~~~l~~--~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~-~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~ 144 (197)
T cd04104 70 DDYLEE--MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKK-FYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDN 144 (197)
T ss_pred HHHHHH--hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCC-EEEEEecccchhhhhhccccccccHHHHHHHHHHH
Confidence 3322 23556888888754 45666677778888888888 8899999999642 2334455555
Q ss_pred HHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 207 LRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 207 ~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
+.+.+...+. ...+||.+|+... ..+++..|.+.+...+|..
T Consensus 145 ~~~~~~~~~~--~~p~v~~vS~~~~--------~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 145 CLENLQEAGV--SEPPVFLVSNFDP--------SDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred HHHHHHHcCC--CCCCEEEEeCCCh--------hhcChHHHHHHHHHHhhHH
Confidence 5666655443 3468999998741 1145788888888877744
No 244
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.69 E-value=2.6e-16 Score=152.71 Aligned_cols=145 Identities=23% Similarity=0.262 Sum_probs=98.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH------H
Q 020176 72 GHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN------M 145 (330)
Q Consensus 72 G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~------~ 145 (330)
|.+|+|||||+|+|++.... ....+|+|++.....++.++..+++|||||+.++... .
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~----------------v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT----------------VGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe----------------ecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHH
Confidence 89999999999999843111 1113478888777777777788999999998776321 1
Q ss_pred HHh--hhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccE
Q 020176 146 ITG--AAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPI 223 (330)
Q Consensus 146 ~~~--~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 223 (330)
..+ ...+|++++|+|+++. ....+....+...++| +++|+||+|+.+.... ..+.+++.+.++ +|+
T Consensus 65 ~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~~i----~~d~~~L~~~lg-----~pv 132 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIP-MILALNLVDEAEKKGI----RIDEEKLEERLG-----VPV 132 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCC-EEEEEehhHHHHhCCC----hhhHHHHHHHcC-----CCE
Confidence 222 2368999999999862 2233444455567888 8899999998653221 123344445544 689
Q ss_pred EEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 224 IRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 224 ~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+++||+++ ++++++++.+.+.
T Consensus 133 v~tSA~tg----------~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 133 VPTSATEG----------RGIERLKDAIRKA 153 (591)
T ss_pred EEEECCCC----------CCHHHHHHHHHHH
Confidence 99999986 3567777766553
No 245
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=6e-16 Score=119.27 Aligned_cols=107 Identities=27% Similarity=0.334 Sum_probs=75.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh------
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD------ 140 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~------ 140 (330)
+|+|+|.+|+|||||+|+|++ ....... ...+.|.......+...+..+.|+||||..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~------~~~~~~~---------~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~ 65 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG------KKLAKVS---------NIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDN 65 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT------STSSEES---------SSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhc------ccccccc---------ccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhH
Confidence 589999999999999999993 2111111 1124555444445566788889999999532
Q ss_pred ---hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEee
Q 020176 141 ---YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNK 190 (330)
Q Consensus 141 ---~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK 190 (330)
........+..+|++++|+|+.........+.+..++ .+.| +++|+||
T Consensus 66 ~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 66 DGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 2334555667899999999987744455566666675 5666 8899998
No 246
>PRK09866 hypothetical protein; Provisional
Probab=99.67 E-value=2.3e-15 Score=142.35 Aligned_cols=115 Identities=16% Similarity=0.085 Sum_probs=82.6
Q ss_pred CeeEEEEeCCCchh-----hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCC--CeEEEEEeeccCcChH-H
Q 020176 127 KRHYAHVDCPGHAD-----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGV--PSLVCFLNKVDLVEDE-E 198 (330)
Q Consensus 127 ~~~i~iiDtPG~~~-----~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~--p~iivviNK~D~~~~~-~ 198 (330)
..+++|+||||... +...+...+..+|+++||+|+..+........+..+...+. | +++|+||+|+.+.+ +
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~P-VILVVNKIDl~dreed 307 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVP-LYVLVNKFDQQDRNSD 307 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCC-EEEEEEcccCCCcccc
Confidence 36799999999532 34456667889999999999988777778888888887774 7 88999999997522 1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 199 LLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
..+.+.+.+...+..... ....|||+||+.+ .++..|++.+...
T Consensus 308 dkE~Lle~V~~~L~q~~i--~f~eIfPVSAlkG----------~nid~LLdeI~~~ 351 (741)
T PRK09866 308 DADQVRALISGTLMKGCI--TPQQIFPVSSMWG----------YLANRARHELANN 351 (741)
T ss_pred hHHHHHHHHHHHHHhcCC--CCceEEEEeCCCC----------CCHHHHHHHHHhC
Confidence 223344344434333332 2346999999998 4588888888773
No 247
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.67 E-value=9.9e-16 Score=122.36 Aligned_cols=148 Identities=21% Similarity=0.186 Sum_probs=95.5
Q ss_pred EEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCce-EEeEEE--EeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGIT-IATAHV--EYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 70 v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t-~~~~~~--~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
++|++|+|||||+++|.+....... ...+ ...... ........+.+||+||+.++.....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 63 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEE-----------------YETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRR 63 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcc-----------------cccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHH
Confidence 5899999999999999853221000 0011 111111 1222356799999999999888888
Q ss_pred HhhhccCeEEEEEeCCCCCchhhHHHH-----HHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 147 TGAAQMDGGILVVSAPDGPMPQTKEHI-----LLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~~~~~~~l-----~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
..+..+|++++|+|++.+........+ ......++| +++++||+|+.......... ........ ...
T Consensus 64 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~~~~~~~---~~~~~~~~----~~~ 135 (157)
T cd00882 64 LYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIP-IILVGNKIDLPEERVVSEEE---LAEQLAKE----LGV 135 (157)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCc-EEEEEeccccccccchHHHH---HHHHHHhh----cCC
Confidence 888899999999999986544443332 223344677 88999999998754322111 11112221 337
Q ss_pred cEEEeeccccccCCccccchhhHHHHHHHHh
Q 020176 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVD 252 (330)
Q Consensus 222 pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~ 252 (330)
|++++|+..+ .++.++++++.
T Consensus 136 ~~~~~s~~~~----------~~i~~~~~~l~ 156 (157)
T cd00882 136 PYFETSAKTG----------ENVEELFEELA 156 (157)
T ss_pred cEEEEecCCC----------CChHHHHHHHh
Confidence 8999999986 35788887764
No 248
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.67 E-value=5.5e-16 Score=129.87 Aligned_cols=160 Identities=14% Similarity=0.046 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+|+++|+.|+|||||+++|........... ..+... .....++.....+.+|||||+.+|....
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~--------------t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~ 66 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHP--------------TVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLR 66 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCC--------------cccceE-EEEEEECCEEEEEEEEECCCChhccccc
Confidence 4899999999999999999973211100000 000000 1112222233567899999998876555
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhH--HHHHHHHHc--CCCeEEEEEeeccCcChHHHH-------HHHHHHHHHHHHhc
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELL-------ELVEMELRELLSFY 214 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~--~~l~~~~~~--~~p~iivviNK~D~~~~~~~~-------~~~~~~~~~~~~~~ 214 (330)
...+..+|++++++|.+.....+.. .++..+... .+| +++|.||+|+....... ....++...+.+.+
T Consensus 67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (187)
T cd04129 67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEI 145 (187)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHh
Confidence 5567789999999999764332222 234444332 567 88999999985421000 00012334455555
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+. .++|++||+++ .++.++++.+.+..
T Consensus 146 ~~----~~~~e~Sa~~~----------~~v~~~f~~l~~~~ 172 (187)
T cd04129 146 GA----KKYMECSALTG----------EGVDDVFEAATRAA 172 (187)
T ss_pred CC----cEEEEccCCCC----------CCHHHHHHHHHHHH
Confidence 53 57999999997 45888888877544
No 249
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.67 E-value=3.2e-15 Score=116.75 Aligned_cols=144 Identities=22% Similarity=0.228 Sum_probs=98.7
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
+.++++|.++|..||||||++++|.+. ..... ..|.....-....++..+++||..|+..+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~------~~~~i-------------~pt~gf~Iktl~~~~~~L~iwDvGGq~~l 73 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGE------DTDTI-------------SPTLGFQIKTLEYKGYTLNIWDVGGQKTL 73 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCC------Ccccc-------------CCccceeeEEEEecceEEEEEEcCCcchh
Confidence 344889999999999999999999842 21111 11222223335567889999999999999
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHH----HHcCCCeEEEEEeeccCcChHHHHHHHH--HHHHHHHHhc
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA----RQVGVPSLVCFLNKVDLVEDEELLELVE--MELRELLSFY 214 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~----~~~~~p~iivviNK~D~~~~~~~~~~~~--~~~~~~~~~~ 214 (330)
..-+.+++..+|++|||+|+++... .++...+..+ +..|.| ++++.||.|+.+.-.. +.+. -.+.++++.
T Consensus 74 r~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~l~~-~~i~~~~~L~~l~ks- 150 (185)
T KOG0073|consen 74 RSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAP-LLVLANKQDLPGALSL-EEISKALDLEELAKS- 150 (185)
T ss_pred HHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCc-eEEEEecCcCccccCH-HHHHHhhCHHHhccc-
Confidence 9999999999999999999987432 2233333222 334777 7889999999852111 1121 133444433
Q ss_pred CCCCCCccEEEeecccc
Q 020176 215 KFPGDEIPIIRGSATSA 231 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~ 231 (330)
..++++-+||.++
T Consensus 151 ----~~~~l~~cs~~tg 163 (185)
T KOG0073|consen 151 ----HHWRLVKCSAVTG 163 (185)
T ss_pred ----cCceEEEEecccc
Confidence 4488999999986
No 250
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=4.8e-16 Score=126.59 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=105.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+++|||-|+.++++..+....... -|+........++....+.+||||+|+++|.
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksT--------------IGvef~t~t~~vd~k~vkaqIWDTAGQERyr 77 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKST--------------IGVEFATRTVNVDGKTVKAQIWDTAGQERYR 77 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccc--------------eeEEEEeeceeecCcEEEEeeecccchhhhc
Confidence 34578999999999999999999854322211111 1445555555566666778999999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..+..+++.+.++++|+|.+.....+ ...+|..++.. +++ +++|.||+||.... ..-.++.+.+.+.-+
T Consensus 78 AitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~niv-imLvGNK~DL~~lr---aV~te~~k~~Ae~~~--- 150 (222)
T KOG0087|consen 78 AITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIV-IMLVGNKSDLNHLR---AVPTEDGKAFAEKEG--- 150 (222)
T ss_pred cccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeE-EEEeecchhhhhcc---ccchhhhHhHHHhcC---
Confidence 99999999999999999998754433 34555666654 567 78899999997622 222335556666544
Q ss_pred CCccEEEeeccccc
Q 020176 219 DEIPIIRGSATSAL 232 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~ 232 (330)
.+++++||..+.
T Consensus 151 --l~f~EtSAl~~t 162 (222)
T KOG0087|consen 151 --LFFLETSALDAT 162 (222)
T ss_pred --ceEEEecccccc
Confidence 579999998863
No 251
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.66 E-value=3.2e-14 Score=125.91 Aligned_cols=150 Identities=18% Similarity=0.239 Sum_probs=94.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC--eeEEEEeCCCchhhH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHADYV 142 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~~~ 142 (330)
.++|+++|++|+|||||+|+|++....... ...+.......+.+++......++..+ ..+++|||||..++.
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~------~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~ 77 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSD------YPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNI 77 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCcccc------CCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccc
Confidence 479999999999999999999843111110 000000111122223333333444444 469999999954431
Q ss_pred ---------------------HHHHHhhh-------ccCeEEEEEeCCC-CCchhhHHHHHHHHHcCCCeEEEEEeeccC
Q 020176 143 ---------------------KNMITGAA-------QMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (330)
Q Consensus 143 ---------------------~~~~~~~~-------~~d~~l~vvda~~-~~~~~~~~~l~~~~~~~~p~iivviNK~D~ 193 (330)
.+.....+ .+|+++++++++. ++...+.+.+..+.. ++| +++|+||+|+
T Consensus 78 ~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~-vi~VinK~D~ 155 (276)
T cd01850 78 NNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVN-IIPVIAKADT 155 (276)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCC-EEEEEECCCc
Confidence 11111111 4788999999875 666777778877764 678 8899999999
Q ss_pred cChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeec
Q 020176 194 VEDEELLELVEMELRELLSFYKFPGDEIPIIRGSA 228 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa 228 (330)
...+++ ...++.+.+.++.++ +++|+...
T Consensus 156 l~~~e~-~~~k~~i~~~l~~~~-----i~~~~~~~ 184 (276)
T cd01850 156 LTPEEL-KEFKQRIMEDIEEHN-----IKIYKFPE 184 (276)
T ss_pred CCHHHH-HHHHHHHHHHHHHcC-----CceECCCC
Confidence 875554 456667888888776 56776543
No 252
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.66 E-value=3e-15 Score=128.20 Aligned_cols=160 Identities=13% Similarity=0.003 Sum_probs=98.8
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (330)
.....++|+++|++|+|||||+++++........ ....+..........+.....+.+|||||+.+
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~ 70 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKY--------------IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK 70 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCC--------------CCccceEEEEEEEEECCeEEEEEEEECCCchh
Confidence 3455679999999999999999876632111000 00012222222222334456789999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchhhHH-HHHHHHH--cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQTKE-HILLARQ--VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~-~l~~~~~--~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
|......++..+|++++|+|.++........ ++..+.. .++| +++++||+|+...... .+...+.+..+
T Consensus 71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~~~~~-----~~~~~~~~~~~-- 142 (215)
T PTZ00132 71 FGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIP-IVLVGNKVDVKDRQVK-----ARQITFHRKKN-- 142 (215)
T ss_pred hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccCccccCC-----HHHHHHHHHcC--
Confidence 8877777788999999999998754433322 2222221 3567 8789999998653211 11123334333
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+.++++||+++ .++++.+.++...+
T Consensus 143 ---~~~~e~Sa~~~----------~~v~~~f~~ia~~l 167 (215)
T PTZ00132 143 ---LQYYDISAKSN----------YNFEKPFLWLARRL 167 (215)
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57899999986 23566555555443
No 253
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.66 E-value=3.8e-15 Score=128.78 Aligned_cols=82 Identities=22% Similarity=0.214 Sum_probs=58.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh------
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD------ 140 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~------ 140 (330)
+|+++|.+|+|||||+++|++.....+. ..+.|.......+...+..+++|||||+.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~----------------~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAA----------------YEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccC----------------CCCccccceEEEEEECCeEEEEEECCCcccccccch
Confidence 6899999999999999999943211110 113444444444556678899999999743
Q ss_pred -hHHHHHHhhhccCeEEEEEeCCCC
Q 020176 141 -YVKNMITGAAQMDGGILVVSAPDG 164 (330)
Q Consensus 141 -~~~~~~~~~~~~d~~l~vvda~~~ 164 (330)
+.......++.+|++++|+|+++.
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCcc
Confidence 334556778899999999998753
No 254
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.65 E-value=1.9e-15 Score=127.13 Aligned_cols=158 Identities=16% Similarity=0.056 Sum_probs=96.9
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHHHHHHhcCccceeeccccCCChhhhhcCceE---E--eE--------EEEeeeCCeeE
Q 020176 65 HVNVGTIGHVDHGKTTLTA-AITKVLAEEGKAKAIAFDEIDKAPEEKKRGITI---A--TA--------HVEYETAKRHY 130 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~-~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~---~--~~--------~~~~~~~~~~i 130 (330)
..+|+++|..|+|||||+. ++.+.....+. +.. +. ..|+ + .. ...++.....+
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~--f~~---------~~--~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l 68 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQ--LLA---------TH--VPTVWAIDQYRVCQEVLERSRDVVDGVSVSL 68 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCccccc--Ccc---------cc--CCceecccceeEEeeeccccceeeCCEEEEE
Confidence 3689999999999999996 44422111110 000 00 0111 0 00 01233345678
Q ss_pred EEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhH-H-HHHHHHH--cCCCeEEEEEeeccCcChHH--------
Q 020176 131 AHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTK-E-HILLARQ--VGVPSLVCFLNKVDLVEDEE-------- 198 (330)
Q Consensus 131 ~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~-~-~l~~~~~--~~~p~iivviNK~D~~~~~~-------- 198 (330)
.||||+|++++. ...+++.+|++++|+|.++....+.. . ++..+.. .+.| +++|.||+|+.....
T Consensus 69 ~iwDTaG~~~~~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~ 145 (195)
T cd01873 69 RLWDTFGDHDKD--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVP-VILVGCKLDLRYADLDEVNRARR 145 (195)
T ss_pred EEEeCCCChhhh--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhccccccchhhhccc
Confidence 999999987643 33467899999999999875443333 2 3344433 2567 889999999864100
Q ss_pred --------HHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 199 --------LLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 199 --------~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
......++.+++.+.++ ++++++||+++ .++.++++.+.+
T Consensus 146 ~~~~~~~~~~~V~~~e~~~~a~~~~-----~~~~E~SAkt~----------~~V~e~F~~~~~ 193 (195)
T cd01873 146 PLARPIKNADILPPETGRAVAKELG-----IPYYETSVVTQ----------FGVKDVFDNAIR 193 (195)
T ss_pred ccccccccCCccCHHHHHHHHHHhC-----CEEEEcCCCCC----------CCHHHHHHHHHH
Confidence 01112345666677665 58999999997 458888887764
No 255
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=5.6e-15 Score=125.71 Aligned_cols=168 Identities=17% Similarity=0.208 Sum_probs=113.9
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEE-EeeeCCeeEEEEeCCCchh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHV-EYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~-~~~~~~~~i~iiDtPG~~~ 140 (330)
++++.+|.++|.+|+|||||||+|..... .....+ |.+.+.... ...+.+..++||||||.++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~---~~v~~v-------------g~~t~~~~~~~~~~~~~~l~lwDtPG~gd 99 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEV---KEVSKV-------------GVGTDITTRLRLSYDGENLVLWDTPGLGD 99 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccC---ceeeec-------------ccCCCchhhHHhhccccceEEecCCCccc
Confidence 56778999999999999999999984211 000100 111111110 1123457799999999666
Q ss_pred -------hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCC-CeEEEEEeeccCcCh------------HHHH
Q 020176 141 -------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGV-PSLVCFLNKVDLVED------------EELL 200 (330)
Q Consensus 141 -------~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~-p~iivviNK~D~~~~------------~~~~ 200 (330)
+.+.....+...|.+++++++.+.....+.++++.....+. .++++++|.+|...+ ....
T Consensus 100 g~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~ 179 (296)
T COG3596 100 GKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIK 179 (296)
T ss_pred chhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHH
Confidence 77778888899999999999999877777778777665544 448999999998753 2223
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 201 ELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
+.++++...+.+.+. +.-|++.+|+... .++..|+.++.+.+|..
T Consensus 180 qfi~~k~~~~~~~~q---~V~pV~~~~~r~~----------wgl~~l~~ali~~lp~e 224 (296)
T COG3596 180 QFIEEKAEALGRLFQ---EVKPVVAVSGRLP----------WGLKELVRALITALPVE 224 (296)
T ss_pred HHHHHHHHHHHHHHh---hcCCeEEeccccC----------ccHHHHHHHHHHhCccc
Confidence 333333333333321 2478998886665 45999999999988744
No 256
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=2.4e-15 Score=130.90 Aligned_cols=117 Identities=16% Similarity=0.163 Sum_probs=81.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh---
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--- 140 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--- 140 (330)
..++|+|+|+||+|||||++++++...+...+.+ +|......+++....++++|||||.-|
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPF----------------TTK~i~vGhfe~~~~R~QvIDTPGlLDRPl 230 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPF----------------TTKGIHVGHFERGYLRIQVIDTPGLLDRPL 230 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCc----------------cccceeEeeeecCCceEEEecCCcccCCCh
Confidence 5578999999999999999999965444333332 455566677888889999999999443
Q ss_pred -----hHHHHHHhhh-ccCeEEEEEeCCCCCchhh---HHHHHHHH-HcCCCeEEEEEeeccCcChH
Q 020176 141 -----YVKNMITGAA-QMDGGILVVSAPDGPMPQT---KEHILLAR-QVGVPSLVCFLNKVDLVEDE 197 (330)
Q Consensus 141 -----~~~~~~~~~~-~~d~~l~vvda~~~~~~~~---~~~l~~~~-~~~~p~iivviNK~D~~~~~ 197 (330)
.-.+...+++ ..++++|++|++..+.-.. ...+...+ .++.| +++|+||+|..+.+
T Consensus 231 ~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p-~v~V~nK~D~~~~e 296 (346)
T COG1084 231 EERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAP-IVVVINKIDIADEE 296 (346)
T ss_pred HHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCC-eEEEEecccccchh
Confidence 2233344444 5788999999998433222 22333333 34555 99999999999754
No 257
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3.7e-15 Score=114.10 Aligned_cols=145 Identities=16% Similarity=0.111 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.++.|+|...+|||+|+-+..+..+.... . +.-|+......+.-.....++++|||.|++.|...+
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~af----v----------sTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiT 87 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAF----V----------STVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTIT 87 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccce----e----------eeeeeeEEEeEeeecccEEEEEEEecccchhhhHHH
Confidence 48999999999999999988743221111 1 011344333333222234678999999999999999
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhHH-HHHHH---HHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTKE-HILLA---RQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~~-~l~~~---~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
-.+++.+++.|+++|.++.......+ +.-.+ ...+.| +|+|.||||+.++.- .-.++.+.+.+++|+
T Consensus 88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naq-vilvgnKCDmd~eRv---is~e~g~~l~~~LGf----- 158 (193)
T KOG0093|consen 88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQ-VILVGNKCDMDSERV---ISHERGRQLADQLGF----- 158 (193)
T ss_pred HHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCce-EEEEecccCCcccee---eeHHHHHHHHHHhCh-----
Confidence 99999999999999998743322222 22222 245778 889999999986421 123466788888885
Q ss_pred cEEEeecccccc
Q 020176 222 PIIRGSATSALQ 233 (330)
Q Consensus 222 pv~~~Sa~~~~~ 233 (330)
.+|++||+.+.|
T Consensus 159 efFEtSaK~Nin 170 (193)
T KOG0093|consen 159 EFFETSAKENIN 170 (193)
T ss_pred HHhhhccccccc
Confidence 599999998653
No 258
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.63 E-value=5.3e-15 Score=127.74 Aligned_cols=154 Identities=20% Similarity=0.226 Sum_probs=96.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC-eeEEEEeCCCchh--
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHAD-- 140 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~-- 140 (330)
....|+++|.||+|||||+|+|+......+.+.+ +|.........+++ .++++-|.||..+
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaF----------------TTL~P~iG~v~yddf~q~tVADiPGiI~GA 258 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAF----------------TTLRPHIGTVNYDDFSQITVADIPGIIEGA 258 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccce----------------eeeccccceeeccccceeEeccCccccccc
Confidence 3457899999999999999999977666555554 23333322233333 3499999999433
Q ss_pred -----hHHHHHHhhhccCeEEEEEeCCCCCc----hhhHHHHHHHHHc-----CCCeEEEEEeeccCcChHHHHHHHHHH
Q 020176 141 -----YVKNMITGAAQMDGGILVVSAPDGPM----PQTKEHILLARQV-----GVPSLVCFLNKVDLVEDEELLELVEME 206 (330)
Q Consensus 141 -----~~~~~~~~~~~~d~~l~vvda~~~~~----~~~~~~l~~~~~~-----~~p~iivviNK~D~~~~~~~~~~~~~~ 206 (330)
+-...+..+..|+..+||+|.+.+.. .+....+..+..+ ..| .+||+||+|+.+.++ +.
T Consensus 259 h~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp-~liVaNKiD~~eae~------~~ 331 (366)
T KOG1489|consen 259 HMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRP-ALIVANKIDLPEAEK------NL 331 (366)
T ss_pred cccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCc-eEEEEeccCchhHHH------HH
Confidence 12223333445999999999987622 2222222233222 345 778999999964321 12
Q ss_pred HHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 207 LRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 207 ~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+.++.+.+.- ..|+++||+++ +++.+|++.+...
T Consensus 332 l~~L~~~lq~----~~V~pvsA~~~----------egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 332 LSSLAKRLQN----PHVVPVSAKSG----------EGLEELLNGLREL 365 (366)
T ss_pred HHHHHHHcCC----CcEEEeeeccc----------cchHHHHHHHhhc
Confidence 3444555432 35999999997 5688888877653
No 259
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.63 E-value=1.7e-14 Score=121.73 Aligned_cols=145 Identities=20% Similarity=0.131 Sum_probs=90.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee-----eCCeeEEEEeCCCchh
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-----TAKRHYAHVDCPGHAD 140 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-----~~~~~i~iiDtPG~~~ 140 (330)
++|+++|..++|||||+++++......... ..-|.+.......+. .....+.||||+|+++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~--------------~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~ 66 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPS--------------WTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES 66 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------------cceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh
Confidence 379999999999999999998432111100 001222322233332 1235689999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchhhH-HHHHHHHH----------------------cCCCeEEEEEeeccCcChH
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQ----------------------VGVPSLVCFLNKVDLVEDE 197 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~~~-~~l~~~~~----------------------~~~p~iivviNK~D~~~~~ 197 (330)
|......+++.+|++|+|+|.++....+.. .++..+.. .++| +++|.||+|+.+..
T Consensus 67 ~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~P-iilVGnK~Dl~~~r 145 (202)
T cd04102 67 VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP-LLVIGTKLDQIPEK 145 (202)
T ss_pred HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCce-EEEEEECccchhhc
Confidence 988888889999999999999885443333 33334432 2467 88999999997632
Q ss_pred HHHHH-HHHHHHHHHHhcCCCCCCccEEEeeccc
Q 020176 198 ELLEL-VEMELRELLSFYKFPGDEIPIIRGSATS 230 (330)
Q Consensus 198 ~~~~~-~~~~~~~~~~~~~~~~~~~pv~~~Sa~~ 230 (330)
..... .......+.++++ .|-+..++..
T Consensus 146 ~~~~~~~~~~~~~ia~~~~-----~~~i~~~c~~ 174 (202)
T cd04102 146 ESSGNLVLTARGFVAEQGN-----AEEINLNCTN 174 (202)
T ss_pred ccchHHHhhHhhhHHHhcC-----CceEEEecCC
Confidence 11111 1112334455555 4566666654
No 260
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.62 E-value=1.3e-14 Score=122.89 Aligned_cols=127 Identities=23% Similarity=0.303 Sum_probs=80.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee--eCCeeEEEEeCCCchhhHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE--TAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~--~~~~~i~iiDtPG~~~~~~~ 144 (330)
+|+++|++|+|||||+++|...... .. . ..++......... ..+..+.+||||||.++...
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~-----~t-------~-----~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~ 64 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYR-----ST-------V-----TSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDK 64 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-----Cc-------c-----CcEeecceEEEeecCCCCceEEEEECCCCHHHHHH
Confidence 6899999999999999999843110 00 0 0011111111111 23567999999999999988
Q ss_pred HHHhhhcc-CeEEEEEeCCCCC--chhhHHHHHHH----HH--cCCCeEEEEEeeccCcCh---HHHHHHHHHHHHHHH
Q 020176 145 MITGAAQM-DGGILVVSAPDGP--MPQTKEHILLA----RQ--VGVPSLVCFLNKVDLVED---EELLELVEMELRELL 211 (330)
Q Consensus 145 ~~~~~~~~-d~~l~vvda~~~~--~~~~~~~l~~~----~~--~~~p~iivviNK~D~~~~---~~~~~~~~~~~~~~~ 211 (330)
+..+++.+ +++|+|+|+.... .....+++..+ .. .++| +++++||+|+... +...+.+++++..+.
T Consensus 65 ~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl~~a~~~~~i~~~le~ei~~~~ 142 (203)
T cd04105 65 LLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIP-VLIACNKQDLFTAKPAKKIKEQLEKELNTLR 142 (203)
T ss_pred HHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCC-EEEEecchhhcccCCHHHHHHHHHHHHHHHH
Confidence 88888888 9999999998752 12233333222 11 3677 8899999998752 233344444444443
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.62 E-value=2.2e-14 Score=121.05 Aligned_cols=167 Identities=15% Similarity=0.167 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh----
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY---- 141 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~---- 141 (330)
++|+++|.+|+|||||+|+|++ ...+... ....+.|...........+..+++|||||..+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg------~~~~~~~--------~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~ 66 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILG------REVFESK--------LSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP 66 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhC------CCccccc--------cCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh
Confidence 4799999999999999999993 3222110 012245555555555567889999999995542
Q ss_pred ---HHHHHH----hhhccCeEEEEEeCCCCCchhhHHHHHHHHHc-C---CCeEEEEEeeccCcChHHHHHH---HHHHH
Q 020176 142 ---VKNMIT----GAAQMDGGILVVSAPDGPMPQTKEHILLARQV-G---VPSLVCFLNKVDLVEDEELLEL---VEMEL 207 (330)
Q Consensus 142 ---~~~~~~----~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~-~---~p~iivviNK~D~~~~~~~~~~---~~~~~ 207 (330)
...+.. ....+|++|+|+++.. ........+..+... | .+++++++|+.|.....++.+. ....+
T Consensus 67 ~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l 145 (196)
T cd01852 67 EQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEAL 145 (196)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHH
Confidence 222222 2346899999999977 777777777666543 3 2457889999998764332222 22456
Q ss_pred HHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 208 RELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 208 ~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
+.+++.++- .++..+.+.. . ......+.+|++.+...++.
T Consensus 146 ~~l~~~c~~-----r~~~f~~~~~-~----~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 146 KRLLEKCGG-----RYVAFNNKAK-G----EEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HHHHHHhCC-----eEEEEeCCCC-c----chhHHHHHHHHHHHHHHHHh
Confidence 667777652 1333333321 0 01124678888888877653
No 262
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.61 E-value=3.8e-15 Score=114.07 Aligned_cols=154 Identities=18% Similarity=0.139 Sum_probs=108.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
...+.++|-.++|||||+|.+... ... ...+.|+......+..++..+.+||.||+..|...
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g-----~~~-------------edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsm 81 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARG-----QYL-------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 81 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeec-----cch-------------hhhcccccceeEEeccCceEEEEEecCCCccHHHH
Confidence 457999999999999999987631 110 01133444445556677788999999999999999
Q ss_pred HHHhhhccCeEEEEEeCCCCCc-hhhHH----HHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC---C
Q 020176 145 MITGAAQMDGGILVVSAPDGPM-PQTKE----HILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK---F 216 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~-~~~~~----~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~---~ 216 (330)
+..+.+.+++++|||||.+... ...++ .+......++| +++..||.|+.+.-.. .++.++.| +
T Consensus 82 WerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~AL~~--------~~li~rmgL~si 152 (186)
T KOG0075|consen 82 WERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGALSK--------IALIERMGLSSI 152 (186)
T ss_pred HHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCc-EEEecccccCcccccH--------HHHHHHhCcccc
Confidence 9999999999999999987321 22222 22333345889 8889999999874221 12233333 3
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
....+-.|.+|++... +++..++++.++.
T Consensus 153 tdREvcC~siScke~~----------Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 153 TDREVCCFSISCKEKV----------NIDITLDWLIEHS 181 (186)
T ss_pred ccceEEEEEEEEcCCc----------cHHHHHHHHHHHh
Confidence 3456788999999863 4888888887754
No 263
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.61 E-value=6.2e-15 Score=112.96 Aligned_cols=144 Identities=19% Similarity=0.163 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
.+..|+|.+|+|||+|+-++....+. |.+... -|+........++....++.||||+|++.|...+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs-~sYitT-------------iGvDfkirTv~i~G~~VkLqIwDtAGqErFrtit 74 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFS-GSYITT-------------IGVDFKIRTVDINGDRVKLQIWDTAGQERFRTIT 74 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccc-cceEEE-------------eeeeEEEEEeecCCcEEEEEEeecccHHHHHHHH
Confidence 35679999999999999888643211 111110 1444444555555566789999999999999999
Q ss_pred HHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020176 146 ITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (330)
..+++..+++++|+|.+.+.. .....+++.++.. .+| -++|.||.|..+.. -...++.+.+....| +.
T Consensus 75 styyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~-~vLVGNK~d~~~Rr---vV~t~dAr~~A~~mg-----ie 145 (198)
T KOG0079|consen 75 STYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVP-KVLVGNKNDDPERR---VVDTEDARAFALQMG-----IE 145 (198)
T ss_pred HHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcccc-ceecccCCCCccce---eeehHHHHHHHHhcC-----ch
Confidence 999999999999999998654 4456677666644 467 44799999988643 123346667777666 56
Q ss_pred EEEeeccccc
Q 020176 223 IIRGSATSAL 232 (330)
Q Consensus 223 v~~~Sa~~~~ 232 (330)
.|++||+...
T Consensus 146 ~FETSaKe~~ 155 (198)
T KOG0079|consen 146 LFETSAKENE 155 (198)
T ss_pred heehhhhhcc
Confidence 9999999863
No 264
>PLN00023 GTP-binding protein; Provisional
Probab=99.60 E-value=1.1e-14 Score=129.08 Aligned_cols=139 Identities=19% Similarity=0.182 Sum_probs=91.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee-------------CCee
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-------------AKRH 129 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-------------~~~~ 129 (330)
...++|+++|..|+|||||+++|......... ....|.+.....+.++. ....
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~--------------~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~ 84 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARP--------------PQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFF 84 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCccccc--------------CCceeeeEEEEEEEECCcccccccccccCCceEE
Confidence 45579999999999999999999853211100 00112333323333321 2356
Q ss_pred EEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc---------------CCCeEEEEEeeccC
Q 020176 130 YAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---------------GVPSLVCFLNKVDL 193 (330)
Q Consensus 130 i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~---------------~~p~iivviNK~D~ 193 (330)
+.||||+|+++|...+..+++.+|++|+|+|.++..... ...++..+... ++| ++||.||+|+
T Consensus 85 LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ip-IILVGNK~DL 163 (334)
T PLN00023 85 VELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVP-YIVIGNKADI 163 (334)
T ss_pred EEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCc-EEEEEECccc
Confidence 899999999999998888999999999999998743332 23344444432 256 8899999999
Q ss_pred cChHHHH---HHHHHHHHHHHHhcCC
Q 020176 194 VEDEELL---ELVEMELRELLSFYKF 216 (330)
Q Consensus 194 ~~~~~~~---~~~~~~~~~~~~~~~~ 216 (330)
...+... ....++.+++.+..++
T Consensus 164 ~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 164 APKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred cccccccccccccHHHHHHHHHHcCC
Confidence 7532111 1234567778888775
No 265
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=3.6e-14 Score=109.37 Aligned_cols=144 Identities=17% Similarity=0.184 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
+++.++|+.|+|||.|+.++.....+...... -|+......+.......+++||||+|+++|...+
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHT--------------iGveFgSrIinVGgK~vKLQIWDTAGQErFRSVt 75 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHT--------------IGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVT 75 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccce--------------eeeeecceeeeecCcEEEEEEeecccHHHHHHHH
Confidence 58999999999999999999865444322211 1344444445555566789999999999999999
Q ss_pred HHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHHcCCCe--EEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020176 146 ITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQVGVPS--LVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~~~~p~--iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (330)
.++++.+-++++|+|++..... ....++.-++.+--|+ ++++.||-|+....+. .-.+..++..+ ..+-
T Consensus 76 RsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~V---tflEAs~FaqE-----nel~ 147 (214)
T KOG0086|consen 76 RSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREV---TFLEASRFAQE-----NELM 147 (214)
T ss_pred HHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhh---hHHHHHhhhcc-----ccee
Confidence 9999999999999999874433 3344555555554443 5566799999875432 11233444443 2356
Q ss_pred EEEeecccc
Q 020176 223 IIRGSATSA 231 (330)
Q Consensus 223 v~~~Sa~~~ 231 (330)
+.++||++|
T Consensus 148 flETSa~TG 156 (214)
T KOG0086|consen 148 FLETSALTG 156 (214)
T ss_pred eeeeccccc
Confidence 889999985
No 266
>COG2262 HflX GTPases [General function prediction only]
Probab=99.60 E-value=1.7e-14 Score=129.34 Aligned_cols=154 Identities=22% Similarity=0.192 Sum_probs=101.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC-CeeEEEEeCCCchh-
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHAD- 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~- 140 (330)
...+.|+++|.+|+|||||+|+|++........ .-.|.+.....+... +..+.+-||-|+.+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~----------------LFATLdpttR~~~l~~g~~vlLtDTVGFI~~ 253 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQ----------------LFATLDPTTRRIELGDGRKVLLTDTVGFIRD 253 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeecccc----------------ccccccCceeEEEeCCCceEEEecCccCccc
Confidence 566799999999999999999999421110100 012333333334443 57899999999544
Q ss_pred -------hHHHHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHH
Q 020176 141 -------YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRE 209 (330)
Q Consensus 141 -------~~~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~ 209 (330)
-.+.++.....+|.++.|||++++.. .+.......+... .+| +|+|.||+|++.+... ..
T Consensus 254 LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p-~i~v~NKiD~~~~~~~--------~~ 324 (411)
T COG2262 254 LPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIP-IILVLNKIDLLEDEEI--------LA 324 (411)
T ss_pred CChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCC-EEEEEecccccCchhh--------hh
Confidence 24455566778999999999998532 3333344445554 456 8899999999875431 11
Q ss_pred HHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 210 LLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 210 ~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
.+... . .+.+++||+++ .|++.|.+.|...++
T Consensus 325 ~~~~~----~-~~~v~iSA~~~----------~gl~~L~~~i~~~l~ 356 (411)
T COG2262 325 ELERG----S-PNPVFISAKTG----------EGLDLLRERIIELLS 356 (411)
T ss_pred hhhhc----C-CCeEEEEeccC----------cCHHHHHHHHHHHhh
Confidence 11211 1 14889999997 468888888877665
No 267
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.58 E-value=1.8e-14 Score=125.03 Aligned_cols=86 Identities=20% Similarity=0.194 Sum_probs=64.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh--
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD-- 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~-- 140 (330)
....+|+++|.|++|||||++.|++...+.+...+ +|.......+++.+.+++++|+||.-+
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~F----------------TTl~~VPG~l~Y~ga~IQild~Pgii~ga 124 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPF----------------TTLEPVPGMLEYKGAQIQLLDLPGIIEGA 124 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCc----------------eecccccceEeecCceEEEEcCcccccCc
Confidence 34568999999999999999999965444444333 233333344778899999999999433
Q ss_pred -----hHHHHHHhhhccCeEEEEEeCCCC
Q 020176 141 -----YVKNMITGAAQMDGGILVVSAPDG 164 (330)
Q Consensus 141 -----~~~~~~~~~~~~d~~l~vvda~~~ 164 (330)
.-++.+..++.||.+++|+|+...
T Consensus 125 s~g~grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 125 SSGRGRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred ccCCCCcceeeeeeccCCEEEEEEecCCC
Confidence 235677888999999999999754
No 268
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.5e-14 Score=131.69 Aligned_cols=162 Identities=17% Similarity=0.152 Sum_probs=109.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh--
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD-- 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~-- 140 (330)
+..+.|+|+|.||+|||||+|+|. .....+++. ..|+|.+.....++..+..+.++||+|..+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~------~~drsIVSp---------v~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~ 330 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALS------REDRSIVSP---------VPGTTRDAIEAQVTVNGVPVRLSDTAGIREES 330 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHh------cCCceEeCC---------CCCcchhhheeEeecCCeEEEEEecccccccc
Confidence 445899999999999999999999 334444433 359999999999999999999999999665
Q ss_pred -------hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcC-----------CCeEEEEEeeccCcChHHHHHH
Q 020176 141 -------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG-----------VPSLVCFLNKVDLVEDEELLEL 202 (330)
Q Consensus 141 -------~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~-----------~p~iivviNK~D~~~~~~~~~~ 202 (330)
-.......+..+|++++|+|+..+...+.....+.+...+ ..+++++.||+|+..+-..
T Consensus 331 ~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~--- 407 (531)
T KOG1191|consen 331 NDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE--- 407 (531)
T ss_pred CChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcccc---
Confidence 1233455567899999999998877777666555555332 2448889999999874110
Q ss_pred HHHHHHHHHHhcCCCCCCccEE-EeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 203 VEMELRELLSFYKFPGDEIPII-RGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~pv~-~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+......+....+. ...|+. .+|++++ +++..|.+++.+.
T Consensus 408 ~~~~~~~~~~~~~~--~~~~i~~~vs~~tk----------eg~~~L~~all~~ 448 (531)
T KOG1191|consen 408 MTKIPVVYPSAEGR--SVFPIVVEVSCTTK----------EGCERLSTALLNI 448 (531)
T ss_pred ccCCceeccccccC--cccceEEEeeechh----------hhHHHHHHHHHHH
Confidence 11011111121111 234444 4888875 5666666666553
No 269
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.57 E-value=9.4e-16 Score=115.40 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=97.9
Q ss_pred EEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHHHhh
Q 020176 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGA 149 (330)
Q Consensus 70 v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~ 149 (330)
++|.+++|||.|+-++-...+-.|..... .|+......+.++....++++|||+|+++|...+..++
T Consensus 2 llgds~~gktcllir~kdgafl~~~fist-------------vgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFIST-------------VGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeee-------------eeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhh
Confidence 68999999999987664332222221111 13444444455555667899999999999999999999
Q ss_pred hccCeEEEEEeCCCCCc-hhhHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEE
Q 020176 150 AQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIR 225 (330)
Q Consensus 150 ~~~d~~l~vvda~~~~~-~~~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~ 225 (330)
+.+|+.++++|..+... .....++..+... .+. +.++.||+|+..+... -.++-+.+.+.|+ +|+.+
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v~-l~llgnk~d~a~er~v---~~ddg~kla~~y~-----ipfme 139 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVA-LMLLGNKCDLAHERAV---KRDDGEKLAEAYG-----IPFME 139 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHh-Hhhhccccccchhhcc---ccchHHHHHHHHC-----CCcee
Confidence 99999999999987443 3344555555544 345 5678999999763211 1234566777777 68999
Q ss_pred eecccccc
Q 020176 226 GSATSALQ 233 (330)
Q Consensus 226 ~Sa~~~~~ 233 (330)
+||++++|
T Consensus 140 tsaktg~n 147 (192)
T KOG0083|consen 140 TSAKTGFN 147 (192)
T ss_pred cccccccc
Confidence 99999654
No 270
>PRK13768 GTPase; Provisional
Probab=99.56 E-value=1.6e-13 Score=119.99 Aligned_cols=178 Identities=27% Similarity=0.313 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCC--------------hhhh---hcCceEEeEE---E----
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA--------------PEEK---KRGITIATAH---V---- 121 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~--------------~~e~---~~g~t~~~~~---~---- 121 (330)
..+++.|.+|+||||++..+.......|+......-+.... .... ..+....... .
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~~ 82 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLLL 82 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHHH
Confidence 36789999999999999999887777776544321111000 0000 0000000000 0
Q ss_pred --------EeeeCCeeEEEEeCCCchhhHH------HHHHhhhc--cCeEEEEEeCCCCCchhhHHHHHHHH-----HcC
Q 020176 122 --------EYETAKRHYAHVDCPGHADYVK------NMITGAAQ--MDGGILVVSAPDGPMPQTKEHILLAR-----QVG 180 (330)
Q Consensus 122 --------~~~~~~~~i~iiDtPG~~~~~~------~~~~~~~~--~d~~l~vvda~~~~~~~~~~~l~~~~-----~~~ 180 (330)
.+...+..+.+|||||+.++.. .....+.. ++++++|+|+..+....+.+....+. ..+
T Consensus 83 ~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~ 162 (253)
T PRK13768 83 TKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLG 162 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 0111234799999999766421 22222333 89999999998766555544333322 568
Q ss_pred CCeEEEEEeeccCcChHHHHHHHHHHHH------------------------HHHHhcCCCCCCccEEEeeccccccCCc
Q 020176 181 VPSLVCFLNKVDLVEDEELLELVEMELR------------------------ELLSFYKFPGDEIPIIRGSATSALQGKN 236 (330)
Q Consensus 181 ~p~iivviNK~D~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~pv~~~Sa~~~~~g~~ 236 (330)
+| +++|+||+|+.+..+. +...+.+. +.++.++ ...+++++|++++
T Consensus 163 ~~-~i~v~nK~D~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~---~~~~vi~iSa~~~----- 232 (253)
T PRK13768 163 LP-QIPVLNKADLLSEEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETG---LPVRVIPVSAKTG----- 232 (253)
T ss_pred CC-EEEEEEhHhhcCchhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHC---CCCcEEEEECCCC-----
Confidence 88 7789999999875433 12211111 2233333 2358999999886
Q ss_pred cccchhhHHHHHHHHhhhCCCC
Q 020176 237 EEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 237 ~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
.++++|++++.+.++..
T Consensus 233 -----~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 233 -----EGFDELYAAIQEVFCGG 249 (253)
T ss_pred -----cCHHHHHHHHHHHcCCC
Confidence 56999999999988754
No 271
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.5e-14 Score=112.20 Aligned_cols=144 Identities=19% Similarity=0.223 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee---------CCeeEEEEeCC
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET---------AKRHYAHVDCP 136 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~---------~~~~i~iiDtP 136 (330)
++...+|.+|+|||+++.+.+...+.. .++.. .|+........+.. ....+.+|||+
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~---qFIsT-----------VGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTA 75 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNT---QFIST-----------VGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTA 75 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccc---eeEEE-----------eecccccceEEEeccCCCCCCcceEEEEeeeccc
Confidence 356779999999999998877432211 11110 02222222222211 12457899999
Q ss_pred CchhhHHHHHHhhhccCeEEEEEeCCCC-CchhhHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH
Q 020176 137 GHADYVKNMITGAAQMDGGILVVSAPDG-PMPQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (330)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~l~vvda~~~-~~~~~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~ 212 (330)
|+++|...+...++.|-+.++++|.+.. .....+.++..++.. .-|.++++.||+|+.+.. ..-+++..++..
T Consensus 76 GQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R---~Vs~~qa~~La~ 152 (219)
T KOG0081|consen 76 GQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQR---VVSEDQAAALAD 152 (219)
T ss_pred cHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhh---hhhHHHHHHHHH
Confidence 9999999999999999999999998763 334456666666543 468899999999997643 333457788889
Q ss_pred hcCCCCCCccEEEeecccc
Q 020176 213 FYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~ 231 (330)
++| +|+|++||.++
T Consensus 153 kyg-----lPYfETSA~tg 166 (219)
T KOG0081|consen 153 KYG-----LPYFETSACTG 166 (219)
T ss_pred HhC-----CCeeeeccccC
Confidence 988 68999999885
No 272
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.53 E-value=2.2e-14 Score=110.89 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=71.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
||+|+|..|+|||||+++|.+..... ........+.+..............+.+||++|+..+.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPD------------NSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcc------------cccccccCCCcEEEEEEEecCCceEEEEEecCccceeccccc
Confidence 68999999999999999999542220 000111123334333333444445589999999988776655
Q ss_pred HhhhccCeEEEEEeCCCCCchhh-HHH---HHHHHH--cCCCeEEEEEeecc
Q 020176 147 TGAAQMDGGILVVSAPDGPMPQT-KEH---ILLARQ--VGVPSLVCFLNKVD 192 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~~~~-~~~---l~~~~~--~~~p~iivviNK~D 192 (330)
..+..+|++++|+|.++....+. .+. +..... .++| +++|.||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 55888999999999987432222 222 222222 2477 889999998
No 273
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.52 E-value=3.2e-13 Score=115.85 Aligned_cols=116 Identities=21% Similarity=0.201 Sum_probs=81.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEe-EEEEeee-CCeeEEEEeCCCchhhH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT-AHVEYET-AKRHYAHVDCPGHADYV 142 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~-~~~~~~~-~~~~i~iiDtPG~~~~~ 142 (330)
.++|+++|..|+|||||+++|.+.....+.... +.... ....... ....+.+|||+|+++|.
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t----------------~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~ 68 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPT----------------IGNLDPAKTIEPYRRNIKLQLWDTAGQEEYR 68 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCc----------------eeeeeEEEEEEeCCCEEEEEeecCCCHHHHH
Confidence 379999999999999999999965433322211 11111 1111111 14568999999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCC--CCchhhHHHHHHHHHcC---CCeEEEEEeeccCcChH
Q 020176 143 KNMITGAAQMDGGILVVSAPD--GPMPQTKEHILLARQVG---VPSLVCFLNKVDLVEDE 197 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~--~~~~~~~~~l~~~~~~~---~p~iivviNK~D~~~~~ 197 (330)
..+..+...++++++++|... .......++...+.... .| +++|.||+|+....
T Consensus 69 ~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~ 127 (219)
T COG1100 69 SLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVP-ILLVGNKIDLFDEQ 127 (219)
T ss_pred HHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCce-EEEEecccccccch
Confidence 999999999999999999986 23333444444555543 66 88999999999754
No 274
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=5.8e-14 Score=112.60 Aligned_cols=161 Identities=20% Similarity=0.191 Sum_probs=110.7
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (330)
..+.+.+|+++|--+|||||++..|-. |..... -.|+......+++.+..+++||..|+.+
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~-----~E~vtt--------------vPTiGfnVE~v~ykn~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKL-----GEIVTT--------------VPTIGFNVETVEYKNISFTVWDVGGQEK 73 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeecc-----CCcccC--------------CCccccceeEEEEcceEEEEEecCCCcc
Confidence 346678999999999999999998852 111110 1233333344556688999999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCc-hhhHHHH-HHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHI-LLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l-~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
+...+..++...+++|||||+++... ...++.+ ..+.. .+.| ++++.||.|+...-. ..++.+.+....
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~-llv~aNKqD~~~als-----~~ei~~~L~l~~ 147 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAP-LLVFANKQDLPGALS-----AAEITNKLGLHS 147 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCce-EEEEechhhccccCC-----HHHHHhHhhhhc
Confidence 99999999999999999999987322 2233333 33222 2456 888999999986421 124555555555
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+......+-.++|.+| +++.+-++++.+.+.
T Consensus 148 l~~~~w~iq~~~a~~G----------~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 148 LRSRNWHIQSTCAISG----------EGLYEGLDWLSNNLK 178 (181)
T ss_pred cCCCCcEEeecccccc----------ccHHHHHHHHHHHHh
Confidence 5556677888888887 567777777766543
No 275
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.51 E-value=2.2e-13 Score=111.48 Aligned_cols=126 Identities=21% Similarity=0.330 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee---eCCeeEEEEeCCCchhhH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE---TAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~---~~~~~i~iiDtPG~~~~~ 142 (330)
..|.++|+.|+|||+|...|... ..... -+++ .....+. .....+.+||+|||.++.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~-----~~~~T--------------~tS~-e~n~~~~~~~~~~~~~~lvD~PGH~rlr 63 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNG-----KTVPT--------------VTSM-ENNIAYNVNNSKGKKLRLVDIPGHPRLR 63 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHS-----S---B-----------------S-SEEEECCGSSTCGTCECEEEETT-HCCC
T ss_pred ceEEEEcCCCCCHHHHHHHHhcC-----CcCCe--------------eccc-cCCceEEeecCCCCEEEEEECCCcHHHH
Confidence 47999999999999999999853 11100 0111 1111111 234679999999999987
Q ss_pred HHHHHh---hhccCeEEEEEeCCCC--CchhhHHHHHHHH---H--cCCCeEEEEEeeccCcCh---HHHHHHHHHHHHH
Q 020176 143 KNMITG---AAQMDGGILVVSAPDG--PMPQTKEHILLAR---Q--VGVPSLVCFLNKVDLVED---EELLELVEMELRE 209 (330)
Q Consensus 143 ~~~~~~---~~~~d~~l~vvda~~~--~~~~~~~~l~~~~---~--~~~p~iivviNK~D~~~~---~~~~~~~~~~~~~ 209 (330)
...... +..+.++|||||++.. -..+..++|..+. . .+.++++|+.||.|+... ......+++++..
T Consensus 64 ~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~~ 143 (181)
T PF09439_consen 64 SKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEIDK 143 (181)
T ss_dssp HHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHHH
T ss_pred HHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHHH
Confidence 766665 7789999999999741 1122333332221 1 244559999999998862 3333444445544
Q ss_pred HH
Q 020176 210 LL 211 (330)
Q Consensus 210 ~~ 211 (330)
+.
T Consensus 144 lr 145 (181)
T PF09439_consen 144 LR 145 (181)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 276
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.51 E-value=5.1e-13 Score=120.09 Aligned_cols=176 Identities=20% Similarity=0.186 Sum_probs=102.0
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCC-----------hhh---hhcCceEEeE--EE----
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA-----------PEE---KKRGITIATA--HV---- 121 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~-----------~~e---~~~g~t~~~~--~~---- 121 (330)
......|+|+|.+|+|||||++.|.......|.......-++... ..+ ..++.-+... ..
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 445678999999999999999999888777666544332222111 011 0011111110 00
Q ss_pred ----------EeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeec
Q 020176 122 ----------EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKV 191 (330)
Q Consensus 122 ----------~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~ 191 (330)
.++..+..++|+||+|...-... ....+|.+++|++...+..-+... ...+.+.. ++|+||+
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k----~gi~E~aD-IiVVNKa 204 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK----KGIMELAD-LIVINKA 204 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH----hhhhhhhh-eEEeehh
Confidence 11234678999999997632222 355799999998744332222211 01222332 5789999
Q ss_pred cCcChHHHHHHHHHHHHHHHHhcCC--CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 192 DLVEDEELLELVEMELRELLSFYKF--PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 192 D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
|+.+.... +....+++..+..... .....|++++||+++ .++++|++.+..+++
T Consensus 205 Dl~~~~~a-~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g----------~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 205 DGDNKTAA-RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEG----------EGIDEIWQAIEDHRA 260 (332)
T ss_pred cccchhHH-HHHHHHHHHHHhcccccccCCCCCEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 99874432 3344456655554221 123479999999986 457777777766543
No 277
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.50 E-value=4.5e-13 Score=104.60 Aligned_cols=147 Identities=16% Similarity=0.107 Sum_probs=97.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
+.++.++|.+-+|||+|+..++......-+....-.++. ..-.|.++|. ..++.+|||+|+++|...
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdff-arlie~~pg~------------riklqlwdtagqerfrsi 74 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFF-ARLIELRPGY------------RIKLQLWDTAGQERFRSI 74 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHH-HHHHhcCCCc------------EEEEEEeeccchHHHHHH
Confidence 468999999999999999999853211111111000000 0011222222 246899999999999999
Q ss_pred HHHhhhccCeEEEEEeCCCCCchhhHHHH-HHHH-HcC---CCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPMPQTKEHI-LLAR-QVG---VPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~~~~~~l-~~~~-~~~---~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
+.++++++-++++|+|.++....+..+.| ..+. ..+ .+.+.+|..|+|+.+.. +.-.++.+.+.+..|+
T Consensus 75 tksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR---qVt~EEaEklAa~hgM--- 148 (213)
T KOG0091|consen 75 TKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR---QVTAEEAEKLAASHGM--- 148 (213)
T ss_pred HHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhc---cccHHHHHHHHHhcCc---
Confidence 99999999999999999985444433333 3332 222 34478889999998743 3344567777888774
Q ss_pred CccEEEeeccccc
Q 020176 220 EIPIIRGSATSAL 232 (330)
Q Consensus 220 ~~pv~~~Sa~~~~ 232 (330)
.++++||+++.
T Consensus 149 --~FVETSak~g~ 159 (213)
T KOG0091|consen 149 --AFVETSAKNGC 159 (213)
T ss_pred --eEEEecccCCC
Confidence 59999999863
No 278
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2.6e-13 Score=107.19 Aligned_cols=170 Identities=19% Similarity=0.159 Sum_probs=110.6
Q ss_pred cCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 60 ~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
...+....|.|+|.-++|||||+.++-......-.... +. +--.|+.......+..+..+.|||..|++
T Consensus 12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~---------~~--ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLN---------PS--KITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCC---------HH--HeecccceeecceeeccceeEEEEcCChH
Confidence 34566789999999999999999998644322111110 00 00133444444555567889999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCc-h----hhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPM-P----QTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~-~----~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
.....+..++..+++++++|||++... . +....+..-...|+| +++..||-|+.+..+. + +++..+...
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p-~L~lankqd~q~~~~~-~----El~~~~~~~ 154 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAP-VLVLANKQDLQNAMEA-A----ELDGVFGLA 154 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCc-hhhhcchhhhhhhhhH-H----HHHHHhhhh
Confidence 999999999999999999999987321 1 122233333456899 7788999999874322 2 344433321
Q ss_pred -CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 215 -KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 215 -~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
..+..+.|+.|+||..+ +|+.+-++++...++
T Consensus 155 e~~~~rd~~~~pvSal~g----------egv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 155 ELIPRRDNPFQPVSALTG----------EGVKEGIEWLVKKLE 187 (197)
T ss_pred hhcCCccCccccchhhhc----------ccHHHHHHHHHHHHh
Confidence 12346789999999986 345555555554443
No 279
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.49 E-value=8.6e-14 Score=107.95 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=105.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
.-.++|+++|..=+|||+|+-++....+....-... ..+.......++.....+.||||+|+++|.
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTl--------------QASF~~kk~n~ed~ra~L~IWDTAGQErfH 76 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTL--------------QASFQNKKVNVEDCRADLHIWDTAGQERFH 76 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHH--------------HHHHhhcccccccceeeeeeeeccchHhhh
Confidence 345799999999999999998887432211100000 001111122233344578999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhHH-HHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTKE-HILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~~-~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..-.-+++.++++|+|+|.++....|... +...++.+ .+. ++||.||+|+..+. +...++...+.+..|
T Consensus 77 ALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~-l~IVGNKiDLEeeR---~Vt~qeAe~YAesvG--- 149 (218)
T KOG0088|consen 77 ALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIE-LLIVGNKIDLEEER---QVTRQEAEAYAESVG--- 149 (218)
T ss_pred ccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeE-EEEecCcccHHHhh---hhhHHHHHHHHHhhc---
Confidence 88788899999999999999865555443 33445443 355 77899999996533 333445666677766
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
..++.+||+.+ .|+.+|++.+...
T Consensus 150 --A~y~eTSAk~N----------~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 150 --ALYMETSAKDN----------VGISELFESLTAK 173 (218)
T ss_pred --hhheecccccc----------cCHHHHHHHHHHH
Confidence 45899999986 4677777766553
No 280
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=4e-12 Score=117.32 Aligned_cols=223 Identities=18% Similarity=0.221 Sum_probs=145.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
.+.+.|+++|++|.||||||..|.+.....--. +..-.+|+ .....++++|+.+| +-+
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~-------------~i~GPiTv------vsgK~RRiTflEcp---~Dl 124 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTID-------------EIRGPITV------VSGKTRRITFLECP---SDL 124 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhh-------------ccCCceEE------eecceeEEEEEeCh---HHH
Confidence 566788999999999999999998654321100 00011222 22455789999999 334
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (330)
..++.....+|.+|++||++-|....+.++|.++...|.|+++-|++..|+.........+++.+...+..--++ ...
T Consensus 125 ~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyq--GaK 202 (1077)
T COG5192 125 HQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQ--GAK 202 (1077)
T ss_pred HHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcC--Cce
Confidence 566777888999999999999999999999999999999999999999999986655555555554433222222 245
Q ss_pred EEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEee---------CCCc--eEEEEEEEe-e
Q 020176 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSI---------QGRG--TVATGRVEQ-G 290 (330)
Q Consensus 223 v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~G--~v~~g~v~~-G 290 (330)
+|..|... +|+-.+- .+..|..++.-.---|-++.+.+..+..+..-.. +.+| ..++|.+.. |
T Consensus 203 lFylsgV~--nGRYpDr---eilnLsRfisVMKfRPl~Wrn~HPy~laDR~~Dlt~p~~ieq~~kv~rki~vYGYlhGt~ 277 (1077)
T COG5192 203 LFYLSGVE--NGRYPDR---EILNLSRFISVMKFRPLEWRNMHPYVLADRVDDLTLPVDIEQNPKVGRKITVYGYLHGTG 277 (1077)
T ss_pred EEEecccc--cCCCCCH---HHHHHHHHHhhhcccccccccCCceeehhhhccccchhhhhhccccCceEEEEEEecCCC
Confidence 77777654 3543332 2444444443322234555666666666554331 2233 457888887 6
Q ss_pred eeecCCEEEEecCCCCCCceEEEEEE
Q 020176 291 TIKVGEEVEVLGLTQGPSLKTTVTGV 316 (330)
Q Consensus 291 ~l~~g~~v~~~~~~~~~~~~~~v~si 316 (330)
-.+...+|.|.+-+. |..+.|..+
T Consensus 278 Lp~~d~~vHIpGvGD--f~~adve~L 301 (1077)
T COG5192 278 LPRKDMEVHIPGVGD--FRMADVEVL 301 (1077)
T ss_pred CCCCCceEeccCccc--cchhhhhhc
Confidence 667777776654433 555555443
No 281
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.48 E-value=2.2e-13 Score=98.89 Aligned_cols=65 Identities=22% Similarity=0.328 Sum_probs=60.2
Q ss_pred eEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 266 ~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
|+|+|+++|.+++.|+|++|+|.+|.+++||++.+.|.+.+.+..++|++||.+++++++|.||+
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd 65 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQ 65 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCC
Confidence 57999999999999999999999999999999999998544467899999999999999999996
No 282
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.48 E-value=5.2e-13 Score=116.94 Aligned_cols=138 Identities=20% Similarity=0.211 Sum_probs=84.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee-eCCeeEEEEeCCCchh----
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-TAKRHYAHVDCPGHAD---- 140 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~i~iiDtPG~~~---- 140 (330)
-.|+++|.||+|||||+++++....+.+.+.+ +|......... .....+++-|.||..+
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpF----------------TTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~ 223 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPF----------------TTLVPNLGVVRVDGGESFVVADIPGLIEGASE 223 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCcc----------------ccccCcccEEEecCCCcEEEecCccccccccc
Confidence 46899999999999999999976555554443 23322222222 3456799999999433
Q ss_pred -------hHHHHHHhhhccCeEEEEEeCCCCC----chhhHHHHHHHHH-----cCCCeEEEEEeeccCcChHHHHHHHH
Q 020176 141 -------YVKNMITGAAQMDGGILVVSAPDGP----MPQTKEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVE 204 (330)
Q Consensus 141 -------~~~~~~~~~~~~d~~l~vvda~~~~----~~~~~~~l~~~~~-----~~~p~iivviNK~D~~~~~~~~~~~~ 204 (330)
|++... .+.+++.|||.+... ...-......+.. .+.| .++|+||+|+..+++..+...
T Consensus 224 G~GLG~~FLrHIE----Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~-~ivv~NKiD~~~~~e~~~~~~ 298 (369)
T COG0536 224 GVGLGLRFLRHIE----RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKP-RIVVLNKIDLPLDEEELEELK 298 (369)
T ss_pred CCCccHHHHHHHH----hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCc-eEEEEeccCCCcCHHHHHHHH
Confidence 555544 488999999998532 2222222233333 3567 668999999776555444333
Q ss_pred HHHHHHHHhcCCCCCCccEEEeecccc
Q 020176 205 MELRELLSFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 205 ~~~~~~~~~~~~~~~~~pv~~~Sa~~~ 231 (330)
+.+ .+..+. .+.+++||.+.
T Consensus 299 ~~l---~~~~~~----~~~~~ISa~t~ 318 (369)
T COG0536 299 KAL---AEALGW----EVFYLISALTR 318 (369)
T ss_pred HHH---HHhcCC----Ccceeeehhcc
Confidence 332 333332 22333898884
No 283
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.6e-12 Score=97.83 Aligned_cols=145 Identities=18% Similarity=0.192 Sum_probs=100.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
.++-.|+|..|+|||.|+..++...+-.. +++. -|+......+.......++.||||.|+++|...
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmad------------cpht--igvefgtriievsgqkiklqiwdtagqerfrav 76 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMAD------------CPHT--IGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV 76 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhc------------CCcc--cceecceeEEEecCcEEEEEEeecccHHHHHHH
Confidence 46778999999999999999985432211 1110 133333444555556678899999999999999
Q ss_pred HHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHHcCCCe--EEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 145 MITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQVGVPS--LVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~~~~p~--iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
+.++++.+.++++|+|.+....- ....++.-++.+--|+ ++++.||.|+....+ .--++.+++.+..| .
T Consensus 77 trsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrd---v~yeeak~faeeng-----l 148 (215)
T KOG0097|consen 77 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRD---VTYEEAKEFAEENG-----L 148 (215)
T ss_pred HHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhccc---CcHHHHHHHHhhcC-----e
Confidence 99999999999999999874332 2233334444443343 666789999976432 23346677777766 4
Q ss_pred cEEEeecccc
Q 020176 222 PIIRGSATSA 231 (330)
Q Consensus 222 pv~~~Sa~~~ 231 (330)
-+++.||+++
T Consensus 149 ~fle~saktg 158 (215)
T KOG0097|consen 149 MFLEASAKTG 158 (215)
T ss_pred EEEEeccccc
Confidence 5899999996
No 284
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.47 E-value=4.8e-12 Score=110.03 Aligned_cols=122 Identities=13% Similarity=0.074 Sum_probs=76.6
Q ss_pred cCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 60 ~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
+.....++|+++|.+|+|||||+|+|++ ...+.... ..+.|...........+..+++|||||..
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg------~~~~~v~~---------~~~~T~~~~~~~~~~~g~~i~vIDTPGl~ 90 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFG------ERKAATSA---------FQSETLRVREVSGTVDGFKLNIIDTPGLL 90 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhC------CCCcccCC---------CCCceEEEEEEEEEECCeEEEEEECCCcC
Confidence 3446678999999999999999999994 22221111 11234444444555667889999999966
Q ss_pred hhH------HH----HHHhhh--ccCeEEEEEeCCC-CCchhhHHHHHHHHH-cCC---CeEEEEEeeccCcCh
Q 020176 140 DYV------KN----MITGAA--QMDGGILVVSAPD-GPMPQTKEHILLARQ-VGV---PSLVCFLNKVDLVED 196 (330)
Q Consensus 140 ~~~------~~----~~~~~~--~~d~~l~vvda~~-~~~~~~~~~l~~~~~-~~~---p~iivviNK~D~~~~ 196 (330)
+.. .. +..++. ..|++++|...+. .....+...+..+.. ++. .++++|+||+|...+
T Consensus 91 ~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 91 ESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred cchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 541 11 122222 4688888875543 333444455555443 342 358899999999753
No 285
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.47 E-value=4e-13 Score=98.47 Aligned_cols=64 Identities=39% Similarity=0.546 Sum_probs=60.8
Q ss_pred CCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 263 DKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 263 ~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
++||+|+|+++|.+++.|+++.|+|.+|.|++||+|++.|.+. .++|+||+.+++++++|.||+
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~----~~~V~sI~~~~~~~~~a~aG~ 65 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGV----TGEVKSVEMHHEPLEEALPGD 65 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCc----EEEEEEEEECCcCcCEECCCC
Confidence 5799999999999999999999999999999999999999764 799999999999999999996
No 286
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.46 E-value=8.8e-13 Score=110.55 Aligned_cols=143 Identities=21% Similarity=0.152 Sum_probs=96.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
..+|+++|.+|+|||+|+..++...+.... +.+.+ ........++.....+.|+||+|+++|...
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y---------~ptie------d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~ 67 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDY---------DPTIE------DSYRKELTVDGEVCMLEILDTAGQEEFSAM 67 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccccccc---------CCCcc------ccceEEEEECCEEEEEEEEcCCCcccChHH
Confidence 468999999999999999988743221111 11100 112223334444567789999999999999
Q ss_pred HHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHH----HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPMPQT-KEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~----~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
...+++.+|+.++|++.++....+. ...+..+. ...+| +++|.||+|+.... ....++...+...++
T Consensus 68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~R---~V~~eeg~~la~~~~---- 139 (196)
T KOG0395|consen 68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVP-IILVGNKCDLERER---QVSEEEGKALARSWG---- 139 (196)
T ss_pred HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhcc---ccCHHHHHHHHHhcC----
Confidence 9999999999999999998544333 23333331 12467 88999999998632 222334455555554
Q ss_pred CccEEEeecccc
Q 020176 220 EIPIIRGSATSA 231 (330)
Q Consensus 220 ~~pv~~~Sa~~~ 231 (330)
++++++||+..
T Consensus 140 -~~f~E~Sak~~ 150 (196)
T KOG0395|consen 140 -CAFIETSAKLN 150 (196)
T ss_pred -CcEEEeeccCC
Confidence 67999999985
No 287
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.44 E-value=8.2e-12 Score=106.81 Aligned_cols=146 Identities=19% Similarity=0.254 Sum_probs=88.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee-eCCeeEEEEeCCCchhhHHH-
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-TAKRHYAHVDCPGHADYVKN- 144 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~i~iiDtPG~~~~~~~- 144 (330)
||+++|+.++||||..+.+.+...... ...-|.|.+.....+. .....+.+||+||+.++...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d---------------T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~ 65 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD---------------TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY 65 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG---------------GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh---------------ccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc
Confidence 689999999999999999884322111 1122556655555554 34568999999998877654
Q ss_pred ----HHHhhhccCeEEEEEeCCCCCchhhHH----HHHHHHHc--CCCeEEEEEeeccCcChHHH---HHHHHHHHHHHH
Q 020176 145 ----MITGAAQMDGGILVVSAPDGPMPQTKE----HILLARQV--GVPSLVCFLNKVDLVEDEEL---LELVEMELRELL 211 (330)
Q Consensus 145 ----~~~~~~~~d~~l~vvda~~~~~~~~~~----~l~~~~~~--~~p~iivviNK~D~~~~~~~---~~~~~~~~~~~~ 211 (330)
....++.++++|||+|+.......... .+..+... ++. +.+++.|+|+..++.. .+...+++.+.+
T Consensus 66 ~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~-v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~ 144 (232)
T PF04670_consen 66 FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIK-VFVFIHKMDLLSEDEREEIFRDIQQRIRDEL 144 (232)
T ss_dssp HTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-E-EEEEEE-CCCS-HHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCe-EEEEEeecccCCHHHHHHHHHHHHHHHHHHh
Confidence 345567899999999998433333322 33333333 345 7789999999875433 344455566666
Q ss_pred HhcCCCCCCccEEEeeccc
Q 020176 212 SFYKFPGDEIPIIRGSATS 230 (330)
Q Consensus 212 ~~~~~~~~~~pv~~~Sa~~ 230 (330)
...+. +.+.++.+|...
T Consensus 145 ~~~~~--~~~~~~~TSI~D 161 (232)
T PF04670_consen 145 EDLGI--EDITFFLTSIWD 161 (232)
T ss_dssp HHTT---TSEEEEEE-TTS
T ss_pred hhccc--cceEEEeccCcC
Confidence 66554 247788888776
No 288
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.7e-12 Score=105.05 Aligned_cols=130 Identities=20% Similarity=0.251 Sum_probs=85.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
.....|.++|..++|||+|.-.|... ..... -+++......+..+.....++|.|||.+..
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~g-----s~~~T--------------vtSiepn~a~~r~gs~~~~LVD~PGH~rlR 96 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITG-----SHRGT--------------VTSIEPNEATYRLGSENVTLVDLPGHSRLR 96 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcC-----CccCe--------------eeeeccceeeEeecCcceEEEeCCCcHHHH
Confidence 33468999999999999999988743 11111 123333445566666678999999999998
Q ss_pred HHHHHhhh---ccCeEEEEEeCCCCCc--hhhHHHHHHH-H-H---cCCCeEEEEEeeccCcC---hHHHHHHHHHHHHH
Q 020176 143 KNMITGAA---QMDGGILVVSAPDGPM--PQTKEHILLA-R-Q---VGVPSLVCFLNKVDLVE---DEELLELVEMELRE 209 (330)
Q Consensus 143 ~~~~~~~~---~~d~~l~vvda~~~~~--~~~~~~l~~~-~-~---~~~p~iivviNK~D~~~---~~~~~~~~~~~~~~ 209 (330)
......+. .+-+++||||+..-.. ....+++... . . .+.|+++++.||.|+.. ++-..+.+++++..
T Consensus 97 ~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~ 176 (238)
T KOG0090|consen 97 RKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHK 176 (238)
T ss_pred HHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHH
Confidence 88877776 7899999999975322 2233333221 1 1 34566999999999975 33344445555544
Q ss_pred HH
Q 020176 210 LL 211 (330)
Q Consensus 210 ~~ 211 (330)
+.
T Consensus 177 lr 178 (238)
T KOG0090|consen 177 LR 178 (238)
T ss_pred HH
Confidence 43
No 289
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.43 E-value=1.4e-12 Score=118.07 Aligned_cols=169 Identities=20% Similarity=0.206 Sum_probs=93.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC-eeEEEEeCCCchh-
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHAD- 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~- 140 (330)
...++|||+|.+|+|||||||+|.+...+. .+.+.+.. ..+|..... |.... ..+++||.||...
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d-~~aA~tGv----------~etT~~~~~--Y~~p~~pnv~lWDlPG~gt~ 99 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHED-EGAAPTGV----------VETTMEPTP--YPHPKFPNVTLWDLPGIGTP 99 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTS-TTS--SSS----------HSCCTS-EE--EE-SS-TTEEEEEE--GGGS
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCC-cCcCCCCC----------CcCCCCCee--CCCCCCCCCeEEeCCCCCCC
Confidence 456799999999999999999997432211 11111100 012222222 22222 3699999999433
Q ss_pred ------hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCc------------ChHHHHHH
Q 020176 141 ------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV------------EDEELLEL 202 (330)
Q Consensus 141 ------~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~------------~~~~~~~~ 202 (330)
|...+ .+..-|++|++.+ .............+..+++| +.+|-||+|.- .+++..+.
T Consensus 100 ~f~~~~Yl~~~--~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~-fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~ 174 (376)
T PF05049_consen 100 NFPPEEYLKEV--KFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKK-FYFVRTKVDSDLYNERRRKPRTFNEEKLLQE 174 (376)
T ss_dssp S--HHHHHHHT--TGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-E-EEEEE--HHHHHHHHHCC-STT--HHTHHHH
T ss_pred CCCHHHHHHHc--cccccCEEEEEeC--CCCchhhHHHHHHHHHcCCc-EEEEEecccccHhhhhccCCcccCHHHHHHH
Confidence 33322 3456787665544 44556666777888899999 88999999961 12444566
Q ss_pred HHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCC
Q 020176 203 VEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPE 259 (330)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~ 259 (330)
+.+.+.+.++..|. ...+||-+|...- ....+..|.+.|...+|...
T Consensus 175 IR~~c~~~L~k~gv--~~P~VFLVS~~dl--------~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 175 IRENCLENLQKAGV--SEPQVFLVSSFDL--------SKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHHHHHHHHCTT---SS--EEEB-TTTT--------TSTTHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHHHHcCC--CcCceEEEeCCCc--------ccCChHHHHHHHHHHhHHHH
Confidence 66677777777665 4567999998652 22457778888877776543
No 290
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.43 E-value=1.7e-12 Score=112.17 Aligned_cols=168 Identities=22% Similarity=0.273 Sum_probs=81.5
Q ss_pred EEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEE---------------------------E
Q 020176 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHV---------------------------E 122 (330)
Q Consensus 70 v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~---------------------------~ 122 (330)
|+|++||||||+++++.+.....|+......- |...+.......++.... .
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNL--DPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~ 78 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNL--DPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEEN 78 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE----TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEc--chHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHH
Confidence 68999999999999999877777765554432 111111111111111000 0
Q ss_pred e-------eeCCeeEEEEeCCCchhhHHHHH------Hhhh--ccCeEEEEEeCCCCCchhh-----HHHHHHHHHcCCC
Q 020176 123 Y-------ETAKRHYAHVDCPGHADYVKNMI------TGAA--QMDGGILVVSAPDGPMPQT-----KEHILLARQVGVP 182 (330)
Q Consensus 123 ~-------~~~~~~i~iiDtPG~~~~~~~~~------~~~~--~~d~~l~vvda~~~~~~~~-----~~~l~~~~~~~~p 182 (330)
+ +.....+.|+|||||.++...+. ..+. ..=++++++|+.....+.. .-.+....+++.|
T Consensus 79 ~d~l~~~i~~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP 158 (238)
T PF03029_consen 79 IDWLDEEIEKYEDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELP 158 (238)
T ss_dssp HHHHHHHHHHHH-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHhhcCCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCC
Confidence 0 00123799999999988644333 2233 2346889999975332221 1111223357899
Q ss_pred eEEEEEeeccCcChH--HHH-----------------HHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhh
Q 020176 183 SLVCFLNKVDLVEDE--ELL-----------------ELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKA 243 (330)
Q Consensus 183 ~iivviNK~D~~~~~--~~~-----------------~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~ 243 (330)
.|.|+||+|+.++. ... ..+.+++.++++.++. ..+++|+|+.++ ++
T Consensus 159 -~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~---~~~f~pls~~~~----------~~ 224 (238)
T PF03029_consen 159 -HVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL---VIRFIPLSSKDG----------EG 224 (238)
T ss_dssp -EEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS---S---EE-BTTTT----------TT
T ss_pred -EEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC---CceEEEEECCCh----------HH
Confidence 66899999999721 111 1122233333444333 138999999986 56
Q ss_pred HHHHHHHHhh
Q 020176 244 ILKLMDAVDE 253 (330)
Q Consensus 244 i~~ll~~l~~ 253 (330)
+.+|+..+.+
T Consensus 225 ~~~L~~~id~ 234 (238)
T PF03029_consen 225 MEELLAAIDK 234 (238)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 291
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.43 E-value=1.3e-12 Score=94.11 Aligned_cols=61 Identities=30% Similarity=0.482 Sum_probs=58.0
Q ss_pred CeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 265 PFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 265 ~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
||+|+|+++|+++ .|++++|+|.+|++++||+|.+.|.+. .++|++||++++++++|.||+
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~----~~~V~si~~~~~~~~~a~aGd 61 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKE----SVEVKSIYVDDEEVDYAVAGE 61 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCc----EEEEEEEEECCeECCEECCCC
Confidence 6899999999999 999999999999999999999999865 699999999999999999995
No 292
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.42 E-value=6.8e-12 Score=112.74 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=51.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEE---------------EEee-eCCeeEE
Q 020176 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH---------------VEYE-TAKRHYA 131 (330)
Q Consensus 68 I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~---------------~~~~-~~~~~i~ 131 (330)
|+++|.+|+|||||+|+|++.....+...+ +..+...|+..-... ..++ .....+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pf--------tT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~ 72 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPF--------TTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVE 72 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCC--------ccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEE
Confidence 589999999999999999954221111111 111111111110000 0001 1234689
Q ss_pred EEeCCCc----hhh---HHHHHHhhhccCeEEEEEeCCC
Q 020176 132 HVDCPGH----ADY---VKNMITGAAQMDGGILVVSAPD 163 (330)
Q Consensus 132 iiDtPG~----~~~---~~~~~~~~~~~d~~l~vvda~~ 163 (330)
+|||||. .++ ....+..++.+|++++|+|+..
T Consensus 73 l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 73 LIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred EEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 9999996 333 3345667899999999999973
No 293
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.42 E-value=1.4e-12 Score=97.49 Aligned_cols=138 Identities=24% Similarity=0.273 Sum_probs=93.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC----chhhH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG----HADYV 142 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG----~~~~~ 142 (330)
+++++|.+|+|||||.++|.+......+.. ...|.. =-.||||| |..+-
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQ-----------------------Ave~~d----~~~IDTPGEy~~~~~~Y 55 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQ-----------------------AVEFND----KGDIDTPGEYFEHPRWY 55 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccc-----------------------eeeccC----ccccCCchhhhhhhHHH
Confidence 799999999999999999984322111111 111211 13689999 44444
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (330)
.........+|.+++|-.++++...-. -.++.....| +|-|++|+|+.++.+ + +..++++...|. -|
T Consensus 56 ~aL~tt~~dadvi~~v~~and~~s~f~---p~f~~~~~k~-vIgvVTK~DLaed~d----I-~~~~~~L~eaGa----~~ 122 (148)
T COG4917 56 HALITTLQDADVIIYVHAANDPESRFP---PGFLDIGVKK-VIGVVTKADLAEDAD----I-SLVKRWLREAGA----EP 122 (148)
T ss_pred HHHHHHhhccceeeeeecccCccccCC---cccccccccc-eEEEEecccccchHh----H-HHHHHHHHHcCC----cc
Confidence 445555678999999999988543222 1233334456 888999999997443 2 255677777775 68
Q ss_pred EEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 223 v~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
||.+|+... .++++|++.|...
T Consensus 123 IF~~s~~d~----------~gv~~l~~~L~~~ 144 (148)
T COG4917 123 IFETSAVDN----------QGVEELVDYLASL 144 (148)
T ss_pred eEEEeccCc----------ccHHHHHHHHHhh
Confidence 999999875 5788888887653
No 294
>PTZ00099 rab6; Provisional
Probab=99.41 E-value=2.9e-12 Score=106.00 Aligned_cols=119 Identities=14% Similarity=0.091 Sum_probs=81.9
Q ss_pred EEeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc---CCCeEEEEEeeccCcCh
Q 020176 121 VEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVCFLNKVDLVED 196 (330)
Q Consensus 121 ~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~---~~p~iivviNK~D~~~~ 196 (330)
..++.....+.||||||+++|...+..+++.+|++|+|+|+++....+. ..++..+... ++| +++|+||+|+...
T Consensus 22 ~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~p-iilVgNK~DL~~~ 100 (176)
T PTZ00099 22 LYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVI-IALVGNKTDLGDL 100 (176)
T ss_pred EEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccc
Confidence 3344445778999999999999888888999999999999987533222 3344433322 355 7899999999642
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 197 EELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
... -.++...+.+.++ .+++++||+++ .++.++++++...+|..
T Consensus 101 ~~v---~~~e~~~~~~~~~-----~~~~e~SAk~g----------~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 101 RKV---TYEEGMQKAQEYN-----TMFHETSAKAG----------HNIKVLFKKIAAKLPNL 144 (176)
T ss_pred cCC---CHHHHHHHHHHcC-----CEEEEEECCCC----------CCHHHHHHHHHHHHHhc
Confidence 111 1113334444443 56899999997 45888888888877643
No 295
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.9e-13 Score=121.93 Aligned_cols=136 Identities=44% Similarity=0.597 Sum_probs=115.6
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHH------------HHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCe
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAI------------TKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKR 128 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L------------~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~ 128 (330)
+++.+++|.++||..+||||+.... -......+++.+...+..+....|+.++++++.....++....
T Consensus 3 ~~~~~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k~ 82 (391)
T KOG0052|consen 3 KEKIHINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKY 82 (391)
T ss_pred CcccccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccceeE
Confidence 4567889999999999999986631 2334566788888888999999999999988888877887888
Q ss_pred eEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCC-------CchhhHHHHHHHHHcCCCeEEEEEeeccCcCh
Q 020176 129 HYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-------PMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 129 ~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~-------~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~ 196 (330)
.++++|.|||.+|.+.+..+..++|+++++|.+.-| ...|+++|..+...+++.++++.+||+|...+
T Consensus 83 ~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~ 157 (391)
T KOG0052|consen 83 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 157 (391)
T ss_pred EEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCC
Confidence 899999999999999999999999999999988332 34899999999999998889999999998763
No 296
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.40 E-value=1.8e-13 Score=108.41 Aligned_cols=146 Identities=19% Similarity=0.201 Sum_probs=98.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
-++++|+|..++||||+|.+.++..+-.+....+-.+.. ...+....++.++.+|||.|+++|-..
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdfl--------------erqi~v~~Edvr~mlWdtagqeEfDaI 85 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFL--------------ERQIKVLIEDVRSMLWDTAGQEEFDAI 85 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhh--------------hHHHHhhHHHHHHHHHHhccchhHHHH
Confidence 478999999999999999999976554444333221111 111122234456789999999999999
Q ss_pred HHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHH--HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020176 145 MITGAAQMDGGILVVSAPDGPM-PQTKEHILLAR--QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~--~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
+..+++.|.+.++|++.++... ..+.++.+... ...+| .++|-||+|++++..... .+++.+.+.+. .
T Consensus 86 tkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IP-tV~vqNKIDlveds~~~~---~evE~lak~l~-----~ 156 (246)
T KOG4252|consen 86 TKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIP-TVFVQNKIDLVEDSQMDK---GEVEGLAKKLH-----K 156 (246)
T ss_pred HHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCC-eEEeeccchhhHhhhcch---HHHHHHHHHhh-----h
Confidence 9999999999999999988543 33344444333 23689 668999999998543322 23333444433 4
Q ss_pred cEEEeecccccc
Q 020176 222 PIIRGSATSALQ 233 (330)
Q Consensus 222 pv~~~Sa~~~~~ 233 (330)
.++.+|++..+|
T Consensus 157 RlyRtSvked~N 168 (246)
T KOG4252|consen 157 RLYRTSVKEDFN 168 (246)
T ss_pred hhhhhhhhhhhh
Confidence 477888887654
No 297
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.39 E-value=1.9e-13 Score=124.53 Aligned_cols=196 Identities=15% Similarity=0.148 Sum_probs=114.1
Q ss_pred CccccCCccccccccCCCccccccccccccccccCCCCCchh--hhh-hhhh-cCCcceeEEEEEcCCCCCHHHHHHHHH
Q 020176 11 SKRIVPFSSQIYSCCRGSLSISDAFSANETSATRCGPSVNPW--WRS-MATF-TRTKLHVNVGTIGHVDHGKTTLTAAIT 86 (330)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~-~~~~~~~~I~v~G~~~~GKSTLi~~L~ 86 (330)
..++|.+.+..++|+ .+.+.|..-.++..-...++.... .+. +..+ ......+++.++|.+|+|||+|+|.++
T Consensus 113 yvrLlk~~dSlyrck---~lk~aAlgrm~tv~k~q~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vt 189 (620)
T KOG1490|consen 113 YVRLLKYGDSLYRCK---QLKRAALGRMATIIKRQKSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVT 189 (620)
T ss_pred HHHHHHhcccHHHHH---HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccc
Confidence 457888999999988 443333333332222233222221 111 1111 224556789999999999999999988
Q ss_pred HHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh------HHHHHH--hhh-ccCeEEE
Q 020176 87 KVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY------VKNMIT--GAA-QMDGGIL 157 (330)
Q Consensus 87 ~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~------~~~~~~--~~~-~~d~~l~ 157 (330)
....+.....+ +|......++++....++++||||.-+. .-++.. ++. .--++||
T Consensus 190 radvevqpYaF----------------TTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLY 253 (620)
T KOG1490|consen 190 RADDEVQPYAF----------------TTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLY 253 (620)
T ss_pred ccccccCCccc----------------ccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhhee
Confidence 54333322222 2333344456667788999999994442 222222 222 2346899
Q ss_pred EEeCCCCCchhhHHHHHHHH-----HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeecccc
Q 020176 158 VVSAPDGPMPQTKEHILLAR-----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 158 vvda~~~~~~~~~~~l~~~~-----~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~ 231 (330)
++|.++.+.....+.+.+.. -.+.| +|+|+||+|....+++.++-++.+..+.+. .++|++.+|..+.
T Consensus 254 fmDLSe~CGySva~QvkLfhsIKpLFaNK~-~IlvlNK~D~m~~edL~~~~~~ll~~~~~~-----~~v~v~~tS~~~e 326 (620)
T KOG1490|consen 254 FMDLSEMCGYSVAAQVKLYHSIKPLFANKV-TILVLNKIDAMRPEDLDQKNQELLQTIIDD-----GNVKVVQTSCVQE 326 (620)
T ss_pred eeechhhhCCCHHHHHHHHHHhHHHhcCCc-eEEEeecccccCccccCHHHHHHHHHHHhc-----cCceEEEecccch
Confidence 99998844433333333322 23667 889999999998766554433333333322 3489999998875
No 298
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.36 E-value=2.4e-11 Score=109.82 Aligned_cols=173 Identities=23% Similarity=0.340 Sum_probs=102.1
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHH----hcCccceeeccccCCChhhhhcC---ceEEeEE-----EEe---ee
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLA----EEGKAKAIAFDEIDKAPEEKKRG---ITIATAH-----VEY---ET 125 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~----~~g~~~~~~~~~~~~~~~e~~~g---~t~~~~~-----~~~---~~ 125 (330)
+....+-|+++|+.++|||||+|+|++... .+.....+.. |..+ ....| +|.+..+ ..+ +.
T Consensus 13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~---DELp-qs~~GktItTTePkfvP~kAvEI~~~~~ 88 (492)
T TIGR02836 13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQ---DELP-QSAAGKTIMTTEPKFVPNEAVEININEG 88 (492)
T ss_pred HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHH---hccC-cCCCCCCcccCCCccccCcceEEeccCC
Confidence 456678999999999999999999996521 1100000000 0000 11235 3333222 111 22
Q ss_pred CCeeEEEEeCCCchh-------------------------hHHH----HHHhhh-ccCeEEEEE-eCC------CCCchh
Q 020176 126 AKRHYAHVDCPGHAD-------------------------YVKN----MITGAA-QMDGGILVV-SAP------DGPMPQ 168 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~-------------------------~~~~----~~~~~~-~~d~~l~vv-da~------~~~~~~ 168 (330)
-...+.++||+|+.+ |... +...+. .+|.+|+|. |.+ +.....
T Consensus 89 ~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~a 168 (492)
T TIGR02836 89 TKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEA 168 (492)
T ss_pred CcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHH
Confidence 236799999999433 1111 334455 799999998 775 455666
Q ss_pred hHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHH
Q 020176 169 TKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLM 248 (330)
Q Consensus 169 ~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll 248 (330)
..+.+..++..++| +++++||+|-..++. ..+ ..++-+.|+ +|++++|+..- ..+.+..+|
T Consensus 169 Ee~~i~eLk~~~kP-fiivlN~~dp~~~et--~~l---~~~l~eky~-----vpvl~v~c~~l--------~~~DI~~il 229 (492)
T TIGR02836 169 EERVIEELKELNKP-FIILLNSTHPYHPET--EAL---RQELEEKYD-----VPVLAMDVESM--------RESDILSVL 229 (492)
T ss_pred HHHHHHHHHhcCCC-EEEEEECcCCCCchh--HHH---HHHHHHHhC-----CceEEEEHHHc--------CHHHHHHHH
Confidence 77888999999999 889999999443221 111 223334444 67888887542 123455666
Q ss_pred HHHhhhCC
Q 020176 249 DAVDEYIP 256 (330)
Q Consensus 249 ~~l~~~~~ 256 (330)
+.+...+|
T Consensus 230 ~~vL~EFP 237 (492)
T TIGR02836 230 EEVLYEFP 237 (492)
T ss_pred HHHHhcCC
Confidence 65555444
No 299
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.35 E-value=3.3e-11 Score=102.81 Aligned_cols=166 Identities=17% Similarity=0.245 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh-----
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD----- 140 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~----- 140 (330)
++|+++|.+|+||||++|.|+ |...+.... .....|...........+..+++|||||..+
T Consensus 1 l~IlllG~tGsGKSs~~N~il------g~~~f~~~~--------~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~ 66 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSIL------GKEVFKSGS--------SAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSD 66 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------TSS-SS--T--------TTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEH
T ss_pred CEEEEECCCCCCHHHHHHHHh------cccceeecc--------ccCCcccccceeeeeecceEEEEEeCCCCCCCcccH
Confidence 489999999999999999998 433322110 0112233333333466789999999999433
Q ss_pred --hHHHHHH----hhhccCeEEEEEeCCCCCchhhHHHHHHHHH-cC---CCeEEEEEeeccCcChHHHHHHHH----HH
Q 020176 141 --YVKNMIT----GAAQMDGGILVVSAPDGPMPQTKEHILLARQ-VG---VPSLVCFLNKVDLVEDEELLELVE----ME 206 (330)
Q Consensus 141 --~~~~~~~----~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~-~~---~p~iivviNK~D~~~~~~~~~~~~----~~ 206 (330)
...++.. .....|++|||+... .+.......+..+.. +| ..+++||+|..|...+..+.+.+. ..
T Consensus 67 ~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~ 145 (212)
T PF04548_consen 67 EEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEA 145 (212)
T ss_dssp HHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchh
Confidence 2333333 234679999999997 677777777766553 34 356889999999887554333333 34
Q ss_pred HHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 207 LRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 207 ~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++.++- .++..+..+.. .......+.+||+.+...+
T Consensus 146 l~~li~~c~~-----R~~~f~n~~~~----~~~~~~qv~~Ll~~ie~mv 185 (212)
T PF04548_consen 146 LQELIEKCGG-----RYHVFNNKTKD----KEKDESQVSELLEKIEEMV 185 (212)
T ss_dssp HHHHHHHTTT-----CEEECCTTHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhcCC-----EEEEEeccccc----hhhhHHHHHHHHHHHHHHH
Confidence 6777877763 24444433110 0111234677777766544
No 300
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.35 E-value=1.3e-11 Score=105.31 Aligned_cols=156 Identities=21% Similarity=0.230 Sum_probs=88.6
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccC-----------CC---hhhhhcCceEEeEEE------
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEID-----------KA---PEEKKRGITIATAHV------ 121 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~-----------~~---~~e~~~g~t~~~~~~------ 121 (330)
..+..+|+|.|+||+|||||++.|.......|....+..-++. +. ......+.-+.....
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 3455799999999999999999999988888776554432211 11 111223333322111
Q ss_pred ----------EeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhh--HHHHHHHHHcCCCeEEEEEe
Q 020176 122 ----------EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQVGVPSLVCFLN 189 (330)
Q Consensus 122 ----------~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~--~~~l~~~~~~~~p~iivviN 189 (330)
-++..++.++|+.|-|...--- .....+|.+++|+-+..|..-|. .-.++. .++ +|+|
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi-~vVN 175 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADI-FVVN 175 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SE-EEEE
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccE-EEEe
Confidence 0133578999999998443222 22456999999998876544433 334444 435 6899
Q ss_pred eccCcChHHHHHHHHHHHHHHHHhcC--CCCCCccEEEeecccc
Q 020176 190 KVDLVEDEELLELVEMELRELLSFYK--FPGDEIPIIRGSATSA 231 (330)
Q Consensus 190 K~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~pv~~~Sa~~~ 231 (330)
|.|+...+. ...+++..+.... ...+..|++.+||.++
T Consensus 176 KaD~~gA~~----~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~ 215 (266)
T PF03308_consen 176 KADRPGADR----TVRDLRSMLHLLREREDGWRPPVLKTSALEG 215 (266)
T ss_dssp --SHHHHHH----HHHHHHHHHHHCSTSCTSB--EEEEEBTTTT
T ss_pred CCChHHHHH----HHHHHHHHHhhccccccCCCCCEEEEEeCCC
Confidence 999665443 3335555554432 2234579999999874
No 301
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.35 E-value=9.4e-12 Score=89.31 Aligned_cols=60 Identities=28% Similarity=0.364 Sum_probs=56.0
Q ss_pred CeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 265 PFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 265 ~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
||+|+|+++|... |+++.|+|.+|.+++||+|.+.|.+. .++|++|+.+++++++|.||+
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~~----~~~V~si~~~~~~~~~a~aGd 60 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNKT----QVEVLSIYNEDVEVRYARPGE 60 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCCc----EEEEEEEEECCEECCEECCCC
Confidence 6899999999864 89999999999999999999999765 699999999999999999996
No 302
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=3.3e-11 Score=91.89 Aligned_cols=158 Identities=14% Similarity=0.156 Sum_probs=103.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
.++.+|..+|-.++||||++..|.- +...... ...|+.+ ....+.+..+++||..|+.+..
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl-----~~~~~~i----------pTvGFnv----etVtykN~kfNvwdvGGqd~iR 75 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKL-----GQSVTTI----------PTVGFNV----ETVTYKNVKFNVWDVGGQDKIR 75 (180)
T ss_pred cccceEEEEecccCCceehhhHHhc-----CCCcccc----------cccceeE----EEEEeeeeEEeeeeccCchhhh
Confidence 3467999999999999999998862 1111111 0012322 2345667889999999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHH----HHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA----RQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~----~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
..+..++....++|||+|+.+.-. ...+..+..+ .....+ ++|..||-|+.+... .+++.+.++.-.+.
T Consensus 76 plWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~-~LvlANkQDlp~A~~-----pqei~d~leLe~~r 149 (180)
T KOG0071|consen 76 PLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAI-ILILANKQDLPDAMK-----PQEIQDKLELERIR 149 (180)
T ss_pred HHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcce-EEEEecCcccccccC-----HHHHHHHhcccccc
Confidence 999999999999999999987421 2222222222 122456 778899999987421 12444444433344
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+...-+.|+||.++ +++.+=+.++.+.+
T Consensus 150 ~~~W~vqp~~a~~g----------dgL~eglswlsnn~ 177 (180)
T KOG0071|consen 150 DRNWYVQPSCALSG----------DGLKEGLSWLSNNL 177 (180)
T ss_pred CCccEeeccccccc----------hhHHHHHHHHHhhc
Confidence 56677899999886 45655566655543
No 303
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.34 E-value=7.6e-12 Score=90.12 Aligned_cols=61 Identities=38% Similarity=0.697 Sum_probs=57.6
Q ss_pred eEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 266 ~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
|+|+|+++|++++.|+|+.|+|.+|.+++||++.+.|.+. .++|+||+.+++++++|.||+
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~----~~~V~sI~~~~~~~~~a~aGd 61 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGE----ETRVRSIQVHGKDVEEAKAGD 61 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCc----eEEEEEEEECCcCcCEEcCCC
Confidence 6899999999999999999999999999999999998654 799999999999999999996
No 304
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.34 E-value=4.6e-12 Score=92.04 Aligned_cols=63 Identities=70% Similarity=1.106 Sum_probs=58.1
Q ss_pred eEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 266 ~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
|+|+|+++|+++++|+|+.|+|.+|.+++||+|.+.|.+. +..++|+|||.+++++++|.||+
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~--~~~~~V~si~~~~~~~~~a~~G~ 63 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGE--TLKTTVTGIEMFRKTLDEAEAGD 63 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCC--CceEEEEEEEECCcCCCEECCCC
Confidence 6899999999999999999999999999999999998643 45799999999999999999985
No 305
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.33 E-value=7e-12 Score=102.97 Aligned_cols=65 Identities=22% Similarity=0.157 Sum_probs=48.6
Q ss_pred CeeEEEEeCCCchh----hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeec
Q 020176 127 KRHYAHVDCPGHAD----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKV 191 (330)
Q Consensus 127 ~~~i~iiDtPG~~~----~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~ 191 (330)
...+.|+||||..+ ....+..++..+|++|+|+++.........+.+........+.+++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 45699999999543 224566677899999999999987776666666666665556588999995
No 306
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.32 E-value=9.9e-11 Score=105.14 Aligned_cols=173 Identities=20% Similarity=0.194 Sum_probs=92.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCC--------hhhh------hcCceEEeEEE-------
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA--------PEEK------KRGITIATAHV------- 121 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~--------~~e~------~~g~t~~~~~~------- 121 (330)
.....|+|+|++|+|||||++.|.......|.......-+.... ...+ ..+..+.....
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 34568899999999999999999987766665443322111110 0000 01111110000
Q ss_pred ---------EeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeecc
Q 020176 122 ---------EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (330)
Q Consensus 122 ---------~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D 192 (330)
.++..+.+++|+||||..... ...+..+|.++++.+...+ .....+.. ...++| .++|+||+|
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~-~l~~~~-~ivv~NK~D 183 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKA-GLMEIA-DIYVVNKAD 183 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHH-HHhhhc-cEEEEEccc
Confidence 012346789999999955322 2345568888888655432 11111111 124677 568999999
Q ss_pred CcChHHHHHHHHHHHHHHHHhcCC--CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 193 LVEDEELLELVEMELRELLSFYKF--PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+...... ......+...+..+.. .....|++++||+++ .++.+|++++.++
T Consensus 184 l~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g----------~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 184 GEGATNV-TIARLMLALALEEIRRREDGWRPPVLTTSAVEG----------RGIDELWDAIEEH 236 (300)
T ss_pred ccchhHH-HHHHHHHHHHHhhccccccCCCCCEEEEEccCC----------CCHHHHHHHHHHH
Confidence 9875421 1111122111111111 112357999999986 3466666655543
No 307
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.32 E-value=6.9e-11 Score=109.43 Aligned_cols=81 Identities=23% Similarity=0.194 Sum_probs=52.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEE-----------------------
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVE----------------------- 122 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~----------------------- 122 (330)
++|+++|.+|+|||||+|+|++......... +.|+......
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~----------------f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~ 65 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYP----------------FTTIDPNVGVAYVRVECPCKELGVKCNPRNGKC 65 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCC----------------CcceeeeeeeeeeccCCchhhhhhhhccccccc
Confidence 4799999999999999999995422211111 1221111100
Q ss_pred ee-eCCeeEEEEeCCCchh-------hHHHHHHhhhccCeEEEEEeCC
Q 020176 123 YE-TAKRHYAHVDCPGHAD-------YVKNMITGAAQMDGGILVVSAP 162 (330)
Q Consensus 123 ~~-~~~~~i~iiDtPG~~~-------~~~~~~~~~~~~d~~l~vvda~ 162 (330)
.+ .....+.|+||||..+ +....+..++.+|++++|+|+.
T Consensus 66 ~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 66 IDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 00 1224688999999421 3345566788999999999997
No 308
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.32 E-value=5.9e-11 Score=105.02 Aligned_cols=143 Identities=20% Similarity=0.277 Sum_probs=82.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC--eeEEEEeCCCchh--
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD-- 140 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~-- 140 (330)
.++|.|+|.+|+|||||+|.|.+....... ...+.......+...+......+...+ ..++++||||+.+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i 77 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISED------SSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI 77 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccccccc------ccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc
Confidence 579999999999999999999853211110 000111111222334444434444333 4688999999443
Q ss_pred -----------hHH--------HHHHhh------hccCeEEEEEeCCC-CCchhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 141 -----------YVK--------NMITGA------AQMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 141 -----------~~~--------~~~~~~------~~~d~~l~vvda~~-~~~~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
|+. +-.... ...|++||+++++. ++.+.+.+.++.+... -++|.|+.|.|..
T Consensus 78 ~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~--vNvIPvIaKaD~l 155 (281)
T PF00735_consen 78 DNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR--VNVIPVIAKADTL 155 (281)
T ss_dssp THCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT--SEEEEEESTGGGS
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc--ccEEeEEeccccc
Confidence 111 111101 13589999999874 6777777766665433 3488999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCC
Q 020176 195 EDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
..+++ +.+++.+.+.++..++
T Consensus 156 t~~el-~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 156 TPEEL-QAFKQRIREDLEENNI 176 (281)
T ss_dssp -HHHH-HHHHHHHHHHHHHTT-
T ss_pred CHHHH-HHHHHHHHHHHHHcCc
Confidence 96554 5577788888888765
No 309
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.30 E-value=7.6e-11 Score=100.22 Aligned_cols=133 Identities=18% Similarity=0.279 Sum_probs=73.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccc--------------cCC---Chhhhh------cCceEEeE
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDE--------------IDK---APEEKK------RGITIATA 119 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~--------------~~~---~~~e~~------~g~t~~~~ 119 (330)
+....|.++|..|+||||++.+|.......+.......-+ .|. .....+ -|+.....
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 3445788999999999999999987655544322221100 000 000000 12211111
Q ss_pred EE--Ee---------eeCCeeEEEEeCCCchhhHHH------HHHhh--hccCeEEEEEeCCCCCchhh--HHHH---HH
Q 020176 120 HV--EY---------ETAKRHYAHVDCPGHADYVKN------MITGA--AQMDGGILVVSAPDGPMPQT--KEHI---LL 175 (330)
Q Consensus 120 ~~--~~---------~~~~~~i~iiDtPG~~~~~~~------~~~~~--~~~d~~l~vvda~~~~~~~~--~~~l---~~ 175 (330)
.+ .+ ..+..++++|||||+.+-... ....+ .-.-++++|+|....-.+.+ ...+ .+
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi 176 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI 176 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence 00 00 123356899999997662111 11111 23457899999866433322 1222 33
Q ss_pred HHHcCCCeEEEEEeeccCcCh
Q 020176 176 ARQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 176 ~~~~~~p~iivviNK~D~~~~ 196 (330)
+.+..+| +|+|.||+|+.+.
T Consensus 177 lyktklp-~ivvfNK~Dv~d~ 196 (366)
T KOG1532|consen 177 LYKTKLP-FIVVFNKTDVSDS 196 (366)
T ss_pred HHhccCC-eEEEEeccccccc
Confidence 4456889 8899999999984
No 310
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.27 E-value=1.1e-10 Score=99.19 Aligned_cols=167 Identities=17% Similarity=0.110 Sum_probs=90.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeecccc-CCChhh-hhcCceEEe-EEE---------------Eee
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEI-DKAPEE-KKRGITIAT-AHV---------------EYE 124 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~-~~~~~e-~~~g~t~~~-~~~---------------~~~ 124 (330)
...++|+++|+.|+|||||+++|+.......+......+.. +..... +..|..+.. ... ...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 35679999999999999999999876432111111111110 111111 112221110 000 001
Q ss_pred eCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHH-HHHHH
Q 020176 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEE-LLELV 203 (330)
Q Consensus 125 ~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~-~~~~~ 203 (330)
..+..+.|++|.|..... .......+..+.|+|+..+..... ......+.+ .++++||+|+.+... ..+.+
T Consensus 100 ~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a-~iiv~NK~Dl~~~~~~~~~~~ 171 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEA-DLIVINKADLAEAVGFDVEKM 171 (207)
T ss_pred cCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh----hhHhHHhhC-CEEEEEHHHccccchhhHHHH
Confidence 124578999999921100 111123566678899876433221 222334567 568999999986321 11222
Q ss_pred HHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 204 EMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.+.++... ...|++++||+++ .++.++++++..+
T Consensus 172 ----~~~l~~~~---~~~~i~~~Sa~~g----------~gv~~l~~~i~~~ 205 (207)
T TIGR00073 172 ----KADAKKIN---PEAEIILMSLKTG----------EGLDEWLEFLEGQ 205 (207)
T ss_pred ----HHHHHHhC---CCCCEEEEECCCC----------CCHHHHHHHHHHh
Confidence 22333332 2378999999997 4688899888764
No 311
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.26 E-value=2.7e-10 Score=100.75 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=71.3
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
....++|+++|.+|+||||++|+|++ ...+..+... +.+...........+..+++|||||..+.
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG------~~v~~vs~f~---------s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIG------ERIATVSAFQ---------SEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhC------CCcccccCCC---------CcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 34678999999999999999999994 3322211110 11122112223346789999999996653
Q ss_pred H---HHHHHhhh------ccCeEEEEEeCCC-CCchhhHHHHHHHHH-cC---CCeEEEEEeeccCcC
Q 020176 142 V---KNMITGAA------QMDGGILVVSAPD-GPMPQTKEHILLARQ-VG---VPSLVCFLNKVDLVE 195 (330)
Q Consensus 142 ~---~~~~~~~~------~~d~~l~vvda~~-~~~~~~~~~l~~~~~-~~---~p~iivviNK~D~~~ 195 (330)
. ......++ ..|++|||...+. .....+...++.+.. +| ..++|+++|+.|..+
T Consensus 100 ~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 100 GYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 1 11122222 5899999955432 344444455544432 23 244889999999774
No 312
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.26 E-value=9.3e-11 Score=101.39 Aligned_cols=180 Identities=20% Similarity=0.151 Sum_probs=102.2
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCC-----------hh---hhhcCceEEeE--EE---
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA-----------PE---EKKRGITIATA--HV--- 121 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~-----------~~---e~~~g~t~~~~--~~--- 121 (330)
..-....|+|.|.||+|||||+..|.....+.|...++..-++... .. ...++.-+... ..
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG 126 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG 126 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccch
Confidence 3344568999999999999999999999888887655443222111 00 00111111110 00
Q ss_pred -----------EeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEee
Q 020176 122 -----------EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNK 190 (330)
Q Consensus 122 -----------~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK 190 (330)
-++-.++.++||.|-|...--- .-...+|.+++|.-+..|...|... .-.+.+-.+ +|+||
T Consensus 127 GlS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK----~GimEiaDi-~vINK 198 (323)
T COG1703 127 GLSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIK----AGIMEIADI-IVINK 198 (323)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHH----hhhhhhhhe-eeEec
Confidence 0133578899999998443222 2234589999988776655444321 112233435 68999
Q ss_pred ccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHH
Q 020176 191 VDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAV 251 (330)
Q Consensus 191 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l 251 (330)
.|....+.-..++...+...-+.+.-+++..|++.+||..+ ++++..|+.+.+.++++
T Consensus 199 aD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g---~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 199 ADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEG---EGIDELWDAIEDHRKFL 256 (323)
T ss_pred cChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccC---CCHHHHHHHHHHHHHHH
Confidence 99776544444444333322222333456789999999885 34444444444444333
No 313
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.26 E-value=1.9e-11 Score=100.63 Aligned_cols=148 Identities=21% Similarity=0.169 Sum_probs=98.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEe-eeCCeeEEEEeCCCchhhH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY-ETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~-~~~~~~i~iiDtPG~~~~~ 142 (330)
..++++|+|..++|||.|+-.++...+......... + .. ...... +.....+.+|||.|+++|-
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-d-----------ny---s~~v~V~dg~~v~L~LwDTAGqedYD 67 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-D-----------NY---SANVTVDDGKPVELGLWDTAGQEDYD 67 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-c-----------cc---eEEEEecCCCEEEEeeeecCCCcccc
Confidence 347899999999999999988875433222211111 0 01 111223 2444568899999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchh--hHHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHH---------HHHHH
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQ--TKEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVE---------MELRE 209 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~--~~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~---------~~~~~ 209 (330)
+.....+..+|.+|++++.......+ ...++-.+..+ ++| +|+|.+|.|+.++....+.+. ++..+
T Consensus 68 rlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vp-iiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~ 146 (198)
T KOG0393|consen 68 RLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVP-IILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLE 146 (198)
T ss_pred cccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCC-EEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHH
Confidence 86666788999999999887643322 33444444444 578 889999999986543333222 35567
Q ss_pred HHHhcCCCCCCccEEEeecccc
Q 020176 210 LLSFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 210 ~~~~~~~~~~~~pv~~~Sa~~~ 231 (330)
+.+++|. ..++++||++.
T Consensus 147 lA~~iga----~~y~EcSa~tq 164 (198)
T KOG0393|consen 147 LAKEIGA----VKYLECSALTQ 164 (198)
T ss_pred HHHHhCc----ceeeeehhhhh
Confidence 7777776 77999999986
No 314
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.25 E-value=5.8e-11 Score=84.86 Aligned_cols=61 Identities=28% Similarity=0.409 Sum_probs=56.8
Q ss_pred eEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 266 ~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
|+|+|.++|..++.|+.++|+|.+|.+++||+|.+.|.+. .++|++||.|++++++|.||.
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~----~~~V~si~~~~~~~~~a~aGd 61 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGK----TSRVKSIETFDGELDEAGAGE 61 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCC----eEEEEEEEECCcEeCEEcCCC
Confidence 6899999999888888899999999999999999999765 699999999999999999985
No 315
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.23 E-value=3.3e-10 Score=100.63 Aligned_cols=147 Identities=20% Similarity=0.321 Sum_probs=96.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhh-hhcCceEEeEEEEeeeCC--eeEEEEeCCCch
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEE-KKRGITIATAHVEYETAK--RHYAHVDCPGHA 139 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e-~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~ 139 (330)
.-.++|.++|+.|.|||||+|.|++........ .+..... ..+++.+......+..++ ..++++||||..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~-------~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfG 93 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETE-------IDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFG 93 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCC-------ccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcc
Confidence 556899999999999999999999653222210 0111111 223444544444444444 467899999955
Q ss_pred hh---------------------HHHHHHhhh-------ccCeEEEEEeCCC-CCchhhHHHHHHHHHcCCCeEEEEEee
Q 020176 140 DY---------------------VKNMITGAA-------QMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCFLNK 190 (330)
Q Consensus 140 ~~---------------------~~~~~~~~~-------~~d~~l~vvda~~-~~~~~~~~~l~~~~~~~~p~iivviNK 190 (330)
++ +.+-....+ ..|+|||++.++. ++.+.+.+.+..+... -++|-||-|
T Consensus 94 D~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~--vNlIPVI~K 171 (373)
T COG5019 94 DFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR--VNLIPVIAK 171 (373)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc--cCeeeeeec
Confidence 42 222111112 3689999999875 7888888877766543 347889999
Q ss_pred ccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEE
Q 020176 191 VDLVEDEELLELVEMELRELLSFYKFPGDEIPII 224 (330)
Q Consensus 191 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 224 (330)
.|....+++ ...++.+++.++.+. +|+|
T Consensus 172 aD~lT~~El-~~~K~~I~~~i~~~n-----I~vf 199 (373)
T COG5019 172 ADTLTDDEL-AEFKERIREDLEQYN-----IPVF 199 (373)
T ss_pred cccCCHHHH-HHHHHHHHHHHHHhC-----Ccee
Confidence 999997665 557778888888865 5666
No 316
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.23 E-value=6.1e-11 Score=90.57 Aligned_cols=144 Identities=21% Similarity=0.218 Sum_probs=93.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC-CeeEEEEeCCCchhh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHADY 141 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~~ 141 (330)
.++++|.++|-.++|||||+..|.+.. .....+..|+.+.. +... ..++++||..|+...
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED---------------~~hltpT~GFn~k~----v~~~g~f~LnvwDiGGqr~I 75 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSED---------------PRHLTPTNGFNTKK----VEYDGTFHLNVWDIGGQRGI 75 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCC---------------hhhccccCCcceEE----EeecCcEEEEEEecCCcccc
Confidence 567899999999999999999997321 11111223443332 2233 378999999999998
Q ss_pred HHHHHHhhhccCeEEEEEeCCCC-CchhhHHHH-HHH---HHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDG-PMPQTKEHI-LLA---RQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~-~~~~~~~~l-~~~---~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
...+..++...|++|||||+++. ...+..+++ +++ +...+| +.+..||-|+...... +++..-+.-.++
T Consensus 76 RpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vp-vlIfankQdlltaa~~-----eeia~klnl~~l 149 (185)
T KOG0074|consen 76 RPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVP-VLIFANKQDLLTAAKV-----EEIALKLNLAGL 149 (185)
T ss_pred chhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccc-eeehhhhhHHHhhcch-----HHHHHhcchhhh
Confidence 88999999999999999998762 222222222 333 334578 7788999998863211 122222333334
Q ss_pred CCCCccEEEeecccc
Q 020176 217 PGDEIPIIRGSATSA 231 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~ 231 (330)
....+.+-.+||.+.
T Consensus 150 rdRswhIq~csals~ 164 (185)
T KOG0074|consen 150 RDRSWHIQECSALSL 164 (185)
T ss_pred hhceEEeeeCccccc
Confidence 334566777887774
No 317
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.22 E-value=1.3e-10 Score=97.95 Aligned_cols=165 Identities=19% Similarity=0.258 Sum_probs=89.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhh--hhcCc-----eEEe---------EEEEe------
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEE--KKRGI-----TIAT---------AHVEY------ 123 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e--~~~g~-----t~~~---------~~~~~------ 123 (330)
.+|+++|+.|+|||||++++++.............+.....+.+ ...+. .+.. .....
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 81 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEA 81 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHH
Confidence 57999999999999999999876443322111111111111111 11111 0000 00000
Q ss_pred ------eeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh-
Q 020176 124 ------ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED- 196 (330)
Q Consensus 124 ------~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~- 196 (330)
......+++|+|.|..- ..... ...+|.++.|+|+.++...... ......... ++++||+|+.+.
T Consensus 82 L~~l~~~~~~~D~iiIEt~G~~l-~~~~~--~~l~~~~i~vvD~~~~~~~~~~----~~~qi~~ad-~~~~~k~d~~~~~ 153 (199)
T TIGR00101 82 VAEMEARFPPLEMVFIESGGDNL-SATFS--PELADLTIFVIDVAAGDKIPRK----GGPGITRSD-LLVINKIDLAPMV 153 (199)
T ss_pred HHHHHhcCCCCCEEEEECCCCCc-ccccc--hhhhCcEEEEEEcchhhhhhhh----hHhHhhhcc-EEEEEhhhccccc
Confidence 11245788999999311 11111 1236889999999875442211 112223332 478999999852
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 197 EELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
....+.+.++++ .+. ...|++++||+++ ++++++++++.+++
T Consensus 154 ~~~~~~~~~~~~----~~~---~~~~i~~~Sa~~g----------~gi~el~~~i~~~~ 195 (199)
T TIGR00101 154 GADLGVMERDAK----KMR---GEKPFIFTNLKTK----------EGLDTVIDWIEHYA 195 (199)
T ss_pred cccHHHHHHHHH----HhC---CCCCEEEEECCCC----------CCHHHHHHHHHhhc
Confidence 112233333333 332 2488999999997 57999999988754
No 318
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.20 E-value=1.5e-10 Score=99.77 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=51.4
Q ss_pred eeEEEEeCCCchh-------------hHHHHHHhhhc-cCeEEEEEeCCCCCchhh-HHHHHHHHHcCCCeEEEEEeecc
Q 020176 128 RHYAHVDCPGHAD-------------YVKNMITGAAQ-MDGGILVVSAPDGPMPQT-KEHILLARQVGVPSLVCFLNKVD 192 (330)
Q Consensus 128 ~~i~iiDtPG~~~-------------~~~~~~~~~~~-~d~~l~vvda~~~~~~~~-~~~l~~~~~~~~p~iivviNK~D 192 (330)
..++|+||||... ....+..++.. .+.+++|+|+..++..+. .+..+.+...+.+ .++|+||+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~r-ti~ViTK~D 203 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGER-TIGVITKLD 203 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCc-EEEEEECCC
Confidence 5799999999641 12234556663 468999999988877766 4677777778888 778999999
Q ss_pred CcCh
Q 020176 193 LVED 196 (330)
Q Consensus 193 ~~~~ 196 (330)
..++
T Consensus 204 ~~~~ 207 (240)
T smart00053 204 LMDE 207 (240)
T ss_pred CCCc
Confidence 9864
No 319
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.19 E-value=5e-11 Score=97.01 Aligned_cols=164 Identities=20% Similarity=0.194 Sum_probs=94.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhc---CceEEe-EEE-----------------Ee
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKR---GITIAT-AHV-----------------EY 123 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~---g~t~~~-~~~-----------------~~ 123 (330)
.++|.+.|++|||||+|+..+++...+.-+...+..+.....+.++.+ |..+.. .+. ..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 478999999999999999999987766543333333333322222222 111110 000 00
Q ss_pred eeCCeeEEEEeCCCchhhHHHHHHhhhccC-eEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHH-HH
Q 020176 124 ETAKRHYAHVDCPGHADYVKNMITGAAQMD-GGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEEL-LE 201 (330)
Q Consensus 124 ~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d-~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~-~~ 201 (330)
+.....+.||.+.| +.... ......| .-++|+|..+|...-.+-.-.+. . ..+ +||||.|+++.-+. .+
T Consensus 93 ~~~~~Dll~iEs~G--NL~~~--~sp~L~d~~~v~VidvteGe~~P~K~gP~i~---~-aDl-lVInK~DLa~~v~~dle 163 (202)
T COG0378 93 DFPDLDLLFIESVG--NLVCP--FSPDLGDHLRVVVIDVTEGEDIPRKGGPGIF---K-ADL-LVINKTDLAPYVGADLE 163 (202)
T ss_pred cCCcCCEEEEecCc--ceecc--cCcchhhceEEEEEECCCCCCCcccCCCcee---E-eeE-EEEehHHhHHHhCccHH
Confidence 11235788999998 22111 1122344 78999999987542221111111 1 224 78999999874221 12
Q ss_pred HHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 202 LVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.+. +-.++.. .+.||+++|++++ +|++++++++...
T Consensus 164 vm~----~da~~~n---p~~~ii~~n~ktg----------~G~~~~~~~i~~~ 199 (202)
T COG0378 164 VMA----RDAKEVN---PEAPIIFTNLKTG----------EGLDEWLRFIEPQ 199 (202)
T ss_pred HHH----HHHHHhC---CCCCEEEEeCCCC----------cCHHHHHHHHHhh
Confidence 222 2223322 4589999999997 6789999888754
No 320
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.19 E-value=2.5e-10 Score=100.27 Aligned_cols=166 Identities=19% Similarity=0.154 Sum_probs=89.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEE------------------Eee
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHV------------------EYE 124 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~------------------~~~ 124 (330)
.....|.|+|.+|+|||||++.|++..........+..+.....+.++.+......... .+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L~ 181 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLP 181 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHHh
Confidence 45678999999999999999999876544332222222221111222222111111111 012
Q ss_pred eCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHH-HHHHH
Q 020176 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEE-LLELV 203 (330)
Q Consensus 125 ~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~-~~~~~ 203 (330)
..+..+.||++-|.--.-.. .-+ ..+.-+.+++..++... .+++-..+..+.+ +|+||+|+.+..+ ..+.+
T Consensus 182 ~~~~d~liIEnvGnLvcPa~--fdl-ge~~~v~vlsV~eg~dk----plKyp~~f~~ADI-VVLNKiDLl~~~~~dle~~ 253 (290)
T PRK10463 182 LDDNGILFIENVGNLVCPAS--FDL-GEKHKVAVLSVTEGEDK----PLKYPHMFAAASL-MLLNKVDLLPYLNFDVEKC 253 (290)
T ss_pred hcCCcEEEEECCCCccCCCc--cch-hhceeEEEEECcccccc----chhccchhhcCcE-EEEEhHHcCcccHHHHHHH
Confidence 23457788888884110000 000 12344577777765321 1122233455634 7899999986321 12222
Q ss_pred HHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 204 EMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
. +.++.+. ...+++++||+++ +++++|+++|..
T Consensus 254 ~----~~lr~ln---p~a~I~~vSA~tG----------eGld~L~~~L~~ 286 (290)
T PRK10463 254 I----ACAREVN---PEIEIILISATSG----------EGMDQWLNWLET 286 (290)
T ss_pred H----HHHHhhC---CCCcEEEEECCCC----------CCHHHHHHHHHH
Confidence 2 2233322 3478999999997 568899998875
No 321
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=3.1e-11 Score=92.47 Aligned_cols=158 Identities=19% Similarity=0.140 Sum_probs=102.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
.+.+|.++|-.|+||+|++-+|-- |..... -.|+......+.+.+.++.+||..|+.....
T Consensus 17 ~e~rililgldGaGkttIlyrlqv-----gevvtt--------------kPtigfnve~v~yKNLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQV-----GEVVTT--------------KPTIGFNVETVPYKNLKFQVWDLGGQTSIRP 77 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEccc-----Cccccc--------------CCCCCcCccccccccccceeeEccCcccccH
Confidence 567899999999999999876631 111110 1122222233445678899999999999988
Q ss_pred HHHHhhhccCeEEEEEeCCCCCc--hhhHHHHHHHH---HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPM--PQTKEHILLAR---QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~--~~~~~~l~~~~---~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
-+..++...|.+|+|||+++... ....++..++. ..+.. ++++.||+|........ ++...+.--.+..
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~-llv~anKqD~~~~~t~~-----E~~~~L~l~~Lk~ 151 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAK-LLVFANKQDYSGALTRS-----EVLKMLGLQKLKD 151 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCce-EEEEeccccchhhhhHH-----HHHHHhChHHHhh
Confidence 99999999999999999987332 22233333333 23434 88899999987632211 1111111111222
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
..+.+|..||.++ +|+++.++|+.+.+.
T Consensus 152 r~~~Iv~tSA~kg----------~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 152 RIWQIVKTSAVKG----------EGLDPAMDWLQRPLK 179 (182)
T ss_pred heeEEEeeccccc----------cCCcHHHHHHHHHHh
Confidence 3478999999987 568888888876443
No 322
>PTZ00258 GTP-binding protein; Provisional
Probab=99.18 E-value=6.5e-10 Score=102.00 Aligned_cols=85 Identities=19% Similarity=0.165 Sum_probs=57.0
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC---------------
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA--------------- 126 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~--------------- 126 (330)
.....+|+|+|.||+|||||+|+|++.....+. .+++|+......+...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n----------------~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~ 81 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAEN----------------FPFCTIDPNTARVNVPDERFDWLCKHFKPKS 81 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccC----------------CCCCcccceEEEEecccchhhHHHHHcCCcc
Confidence 344568999999999999999999843221111 1234444333322222
Q ss_pred --CeeEEEEeCCCchh-------hHHHHHHhhhccCeEEEEEeCC
Q 020176 127 --KRHYAHVDCPGHAD-------YVKNMITGAAQMDGGILVVSAP 162 (330)
Q Consensus 127 --~~~i~iiDtPG~~~-------~~~~~~~~~~~~d~~l~vvda~ 162 (330)
..++.|+||||... +.......++.+|++++|||+.
T Consensus 82 ~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 82 IVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23589999999432 4445667788999999999984
No 323
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.16 E-value=9.2e-10 Score=99.85 Aligned_cols=81 Identities=23% Similarity=0.222 Sum_probs=53.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC-----------------Ce
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-----------------KR 128 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-----------------~~ 128 (330)
++|+++|.+|+|||||+|+|++.....+ ..+++|+......+... ..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~----------------nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a 66 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAA----------------NYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPA 66 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeec----------------ccccccccceEEEEEeccccchhhHHhcCCccccCc
Confidence 5899999999999999999995321111 11234433322222111 13
Q ss_pred eEEEEeCCCchh-------hHHHHHHhhhccCeEEEEEeCC
Q 020176 129 HYAHVDCPGHAD-------YVKNMITGAAQMDGGILVVSAP 162 (330)
Q Consensus 129 ~i~iiDtPG~~~-------~~~~~~~~~~~~d~~l~vvda~ 162 (330)
.+.|+||||..+ +....+..++.+|++++|||+.
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 589999999432 3445666788999999999985
No 324
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=1.7e-09 Score=90.30 Aligned_cols=143 Identities=18% Similarity=0.236 Sum_probs=87.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhc-CceEEeEEEEeeeCC--eeEEEEeCCCch
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKR-GITIATAHVEYETAK--RHYAHVDCPGHA 139 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~-g~t~~~~~~~~~~~~--~~i~iiDtPG~~ 139 (330)
--++||.++|++|.|||||+|.|............ ...+..+ .+.+....-.++.++ .+++++||||+.
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~--------~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfG 115 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSD--------NSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFG 115 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCC--------cccCcccceEEEEeeeeeeeecceEEEEEEecCCCcc
Confidence 34689999999999999999999864332211110 0011111 111222222223333 468899999944
Q ss_pred h---------------------hHHHHHHhhh-------ccCeEEEEEeCCC-CCchhhHHHHHHHHHcCCCeEEEEEee
Q 020176 140 D---------------------YVKNMITGAA-------QMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCFLNK 190 (330)
Q Consensus 140 ~---------------------~~~~~~~~~~-------~~d~~l~vvda~~-~~~~~~~~~l~~~~~~~~p~iivviNK 190 (330)
| |+++-....+ ..++++|.+.++. .+.+.+.+++..+... -+++-||-|
T Consensus 116 DqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v--vNvvPVIak 193 (336)
T KOG1547|consen 116 DQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV--VNVVPVIAK 193 (336)
T ss_pred cccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh--heeeeeEee
Confidence 4 3333322222 3578999999875 4556777777665433 447788999
Q ss_pred ccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 191 VDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 191 ~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
.|...-++. ...++.+++-+...++
T Consensus 194 aDtlTleEr-~~FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 194 ADTLTLEER-SAFKQRIRKELEKHGI 218 (336)
T ss_pred cccccHHHH-HHHHHHHHHHHHhcCc
Confidence 999885544 4566788888887775
No 325
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.10 E-value=7.2e-10 Score=81.84 Aligned_cols=68 Identities=24% Similarity=0.308 Sum_probs=60.4
Q ss_pred CCCCeEEEEEEEEeeC--------CCceEEEEEEEeeeeecCCEEEEecCCC--------CCCceEEEEEEEeCceeecE
Q 020176 262 LDKPFLMPIEDVFSIQ--------GRGTVATGRVEQGTIKVGEEVEVLGLTQ--------GPSLKTTVTGVEMFKKILDR 325 (330)
Q Consensus 262 ~~~~~~~~i~~~~~~~--------~~G~v~~g~v~~G~l~~g~~v~~~~~~~--------~~~~~~~v~si~~~~~~~~~ 325 (330)
.++|++|+|.++|.++ .+|.|+.|+|.+|.|++||+|.+.|--. ..++..+|.||+.++..+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 5689999999999998 7999999999999999999999986511 12578999999999999999
Q ss_pred EecC
Q 020176 326 GEVS 329 (330)
Q Consensus 326 a~~g 329 (330)
|.||
T Consensus 82 a~pG 85 (113)
T cd03688 82 AVPG 85 (113)
T ss_pred EeCC
Confidence 9997
No 326
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=3.7e-10 Score=88.78 Aligned_cols=114 Identities=20% Similarity=0.177 Sum_probs=80.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
++.-++.++|-.|+|||||++.|-..... . . -.|.......+...+..++.+|..||..-.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~--q------h-----------vPTlHPTSE~l~Ig~m~ftt~DLGGH~qAr 78 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLG--Q------H-----------VPTLHPTSEELSIGGMTFTTFDLGGHLQAR 78 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccccc--c------c-----------CCCcCCChHHheecCceEEEEccccHHHHH
Confidence 34458999999999999999998632110 0 0 011122222234566789999999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCCC-CchhhHHHHHHHH----HcCCCeEEEEEeeccCcCh
Q 020176 143 KNMITGAAQMDGGILVVSAPDG-PMPQTKEHILLAR----QVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~-~~~~~~~~l~~~~----~~~~p~iivviNK~D~~~~ 196 (330)
+.+..++..+|+++++||+.+. ...+.++.+..+. ...+| +++..||+|....
T Consensus 79 r~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp-~lilgnKId~p~a 136 (193)
T KOG0077|consen 79 RVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVP-FLILGNKIDIPYA 136 (193)
T ss_pred HHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCc-ceeecccccCCCc
Confidence 9999999999999999999873 2233444444433 24678 7789999999874
No 327
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.04 E-value=1.1e-08 Score=97.96 Aligned_cols=116 Identities=14% Similarity=0.041 Sum_probs=69.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh---
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY--- 141 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~--- 141 (330)
..+|+++|.+|+|||||+|+|++ +..+.... ...++|. .........+..+.+|||||..+.
T Consensus 118 slrIvLVGKTGVGKSSLINSILG------ekvf~vss--------~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~d 182 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFG------EVKFSTDA--------FGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASD 182 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc------cccccccC--------CCCCceE-EEEEEEEECCceEEEEECCCCCccccc
Confidence 46899999999999999999994 32222110 0112332 222233345678999999996542
Q ss_pred -------HHHHHHhhh--ccCeEEEEEeCCCC-CchhhHHHHHHHH-HcC---CCeEEEEEeeccCcC
Q 020176 142 -------VKNMITGAA--QMDGGILVVSAPDG-PMPQTKEHILLAR-QVG---VPSLVCFLNKVDLVE 195 (330)
Q Consensus 142 -------~~~~~~~~~--~~d~~l~vvda~~~-~~~~~~~~l~~~~-~~~---~p~iivviNK~D~~~ 195 (330)
.......+. .+|++|+|+..... ........++.+. .+| ..++|||+|..|..+
T Consensus 183 q~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 183 QSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 122222333 47888888866432 2123333444433 223 466889999999986
No 328
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.03 E-value=7.6e-09 Score=80.31 Aligned_cols=160 Identities=19% Similarity=0.156 Sum_probs=98.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceE-EeEEEEeee---CCeeEEEEeCCCchh
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITI-ATAHVEYET---AKRHYAHVDCPGHAD 140 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~-~~~~~~~~~---~~~~i~iiDtPG~~~ 140 (330)
..+|+++|.-++|||.++..|+-...-.|.. . .-|+ ++....++. ....+.|.||.|..+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e-------~---------~pTiEDiY~~svet~rgarE~l~lyDTaGlq~ 72 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTE-------L---------HPTIEDIYVASVETDRGAREQLRLYDTAGLQG 72 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCc-------c---------ccchhhheeEeeecCCChhheEEEeecccccC
Confidence 3589999999999999999997321111110 0 0111 112222222 235789999999888
Q ss_pred hHHHH-HHhhhccCeEEEEEeCCCCCchhhHHHHHHHH-----HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 141 YVKNM-ITGAAQMDGGILVVSAPDGPMPQTKEHILLAR-----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 141 ~~~~~-~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~-----~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
...+. ..++.-+|+.++|++..+....+-.+.+..-. ...+| +++..||+|+.++.+... +..+....
T Consensus 73 ~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvp-iVVLaN~rdr~~p~~vd~----d~A~~Wa~- 146 (198)
T KOG3883|consen 73 GQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVP-IVVLANKRDRAEPREVDM----DVAQIWAK- 146 (198)
T ss_pred chhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcccccccc-EEEEechhhcccchhcCH----HHHHHHHh-
Confidence 84444 45667799999999998755555444443322 22467 888899999986543221 22222211
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCC
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPE 259 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~ 259 (330)
.+.+..+.++|... ..+.+.+..+...+..|.
T Consensus 147 ---rEkvkl~eVta~dR----------~sL~epf~~l~~rl~~pq 178 (198)
T KOG3883|consen 147 ---REKVKLWEVTAMDR----------PSLYEPFTYLASRLHQPQ 178 (198)
T ss_pred ---hhheeEEEEEeccc----------hhhhhHHHHHHHhccCCc
Confidence 24577889988764 346666777766665553
No 329
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=7.5e-09 Score=92.80 Aligned_cols=144 Identities=18% Similarity=0.245 Sum_probs=90.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC--eeEEEEeCCCchh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (330)
--.+++.++|..|.|||||+|.|+.......... ............+......++.++ ..++++||||..|
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~-------~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREV-------PGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCccc-------CCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence 3458999999999999999999985422211100 111111112333444444444333 4678999999555
Q ss_pred h-------------HHHH-HHh-----------hh--ccCeEEEEEeCCC-CCchhhHHHHHHHHHcCCCeEEEEEeecc
Q 020176 141 Y-------------VKNM-ITG-----------AA--QMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (330)
Q Consensus 141 ~-------------~~~~-~~~-----------~~--~~d~~l~vvda~~-~~~~~~~~~l~~~~~~~~p~iivviNK~D 192 (330)
. +... ..+ .. ..|++||+|.+.. |+.+.+.+.+..+.. .+. +|-||-|.|
T Consensus 92 ~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vN-iIPVI~KaD 169 (366)
T KOG2655|consen 92 AVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVN-LIPVIAKAD 169 (366)
T ss_pred cccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-ccc-ccceeeccc
Confidence 2 1111 111 11 4689999999875 688888877776543 344 778899999
Q ss_pred CcChHHHHHHHHHHHHHHHHhcCC
Q 020176 193 LVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
...++++ ..+++.+++.++...+
T Consensus 170 ~lT~~El-~~~K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 170 TLTKDEL-NQFKKRIRQDIEEHNI 192 (366)
T ss_pred cCCHHHH-HHHHHHHHHHHHHcCc
Confidence 9996665 4566678887877654
No 330
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.00 E-value=5.4e-09 Score=81.31 Aligned_cols=152 Identities=16% Similarity=0.233 Sum_probs=104.9
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (330)
+..-.++|.++|....|||||+-...+...+... +...|+...-...........+.|||..|+++
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~--------------~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~ 81 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEY--------------TQTLGVNFMDKTVSIRGTDISFSIWDLGGQRE 81 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHH--------------HHHhCccceeeEEEecceEEEEEEEecCCcHh
Confidence 3445679999999999999999888754322111 11223333333333444456678999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHHcC---CCeEEEEEeeccCcC--hHHHHHHHHHHHHHHHHhc
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQVG---VPSLVCFLNKVDLVE--DEELLELVEMELRELLSFY 214 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~~~---~p~iivviNK~D~~~--~~~~~~~~~~~~~~~~~~~ 214 (330)
|.....-+-..+-++++++|-+..... ...++.+.++..+ +| + +|.+|-|+.- +.+..+.+..+.+.+.+..
T Consensus 82 ~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-i-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~m 159 (205)
T KOG1673|consen 82 FINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-I-LVGTKYDLFIDLPPELQETISRQARKYAKVM 159 (205)
T ss_pred hhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-E-EeccchHhhhcCCHHHHHHHHHHHHHHHHHh
Confidence 988877766778889999999875443 3456667777665 67 4 6899999752 3555666777777777765
Q ss_pred CCCCCCccEEEeecccccc
Q 020176 215 KFPGDEIPIIRGSATSALQ 233 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~ 233 (330)
. .+.|++|+-...|
T Consensus 160 n-----AsL~F~Sts~sIN 173 (205)
T KOG1673|consen 160 N-----ASLFFCSTSHSIN 173 (205)
T ss_pred C-----CcEEEeecccccc
Confidence 4 6799999877643
No 331
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.97 E-value=4.1e-09 Score=91.84 Aligned_cols=151 Identities=21% Similarity=0.256 Sum_probs=96.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh--
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD-- 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~-- 140 (330)
.+...|+++|.+|+|||||+++|++.........+.+ .|.+ ... ..+ ..+..+.+.||-|+..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFAT---LDpT---------~h~--a~L-psg~~vlltDTvGFisdL 240 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFAT---LDPT---------LHS--AHL-PSGNFVLLTDTVGFISDL 240 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhhee---ccch---------hhh--ccC-CCCcEEEEeechhhhhhC
Confidence 3456899999999999999999995433222211111 1111 110 111 2346788999999543
Q ss_pred ------hHHHHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHHcCCC------eEEEEEeeccCcChHHHHHHHHHHH
Q 020176 141 ------YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQVGVP------SLVCFLNKVDLVEDEELLELVEMEL 207 (330)
Q Consensus 141 ------~~~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~~~~p------~iivviNK~D~~~~~~~~~~~~~~~ 207 (330)
-...++.....+|.++-|+|.+.+.- .|....+..+...++| .+|=|-||+|..+.. ..
T Consensus 241 P~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-----~e--- 312 (410)
T KOG0410|consen 241 PIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-----VE--- 312 (410)
T ss_pred cHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-----Cc---
Confidence 13334455668999999999998544 5555677788888876 345567888866521 00
Q ss_pred HHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 208 RELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 208 ~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
.+..-.+++||++| ++++++++++.....
T Consensus 313 ----------~E~n~~v~isaltg----------dgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 313 ----------EEKNLDVGISALTG----------DGLEELLKAEETKVA 341 (410)
T ss_pred ----------cccCCccccccccC----------ccHHHHHHHHHHHhh
Confidence 01122688999997 678999988877554
No 332
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.94 E-value=8e-09 Score=88.32 Aligned_cols=114 Identities=24% Similarity=0.307 Sum_probs=82.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHH--hcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc--
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLA--EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH-- 138 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~--~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~-- 138 (330)
...+++++.|.+|+|||+|+|.+++... +.++ .+.|.|....+.. -+..++++|.||.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k---------------~K~g~Tq~in~f~---v~~~~~~vDlPG~~~ 195 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSK---------------SKNGKTQAINHFH---VGKSWYEVDLPGYGR 195 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcC---------------CCCccceeeeeee---ccceEEEEecCCccc
Confidence 3457899999999999999999985321 1111 0345555554443 3568999999991
Q ss_pred --------hhhHHHHHHhh---hccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 139 --------ADYVKNMITGA---AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 139 --------~~~~~~~~~~~---~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
.++.+.+..++ .+.-.+.+++|++-++...+...+..+.+.++| +.+|+||||...
T Consensus 196 a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP-~t~vfTK~DK~k 262 (320)
T KOG2486|consen 196 AGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVP-MTSVFTKCDKQK 262 (320)
T ss_pred ccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCC-eEEeeehhhhhh
Confidence 22333333332 344567889999999999999999999999999 778999999865
No 333
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.94 E-value=1e-08 Score=85.87 Aligned_cols=65 Identities=23% Similarity=0.288 Sum_probs=52.9
Q ss_pred CeeEEEEeC-CCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 127 KRHYAHVDC-PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 127 ~~~i~iiDt-PG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
...++++|| +|.+.|.+.+ ...+|.+|+|+|++........+.-++....+++++.+|+||+|..
T Consensus 133 ~~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 367899999 7888887665 4469999999999876666667777788888977799999999955
No 334
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.93 E-value=1.6e-08 Score=85.19 Aligned_cols=86 Identities=22% Similarity=0.202 Sum_probs=61.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh-
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY- 141 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~- 141 (330)
...-+|+++|.|.+|||||+..++....+.....+ +|.......+++.+..++++|.||..+-
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeF----------------TTLtcIpGvi~y~ga~IQllDLPGIieGA 123 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEF----------------TTLTCIPGVIHYNGANIQLLDLPGIIEGA 123 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceee----------------eEEEeecceEEecCceEEEecCccccccc
Confidence 34568999999999999999999854332222111 3444444556778889999999995442
Q ss_pred ------HHHHHHhhhccCeEEEEEeCCCC
Q 020176 142 ------VKNMITGAAQMDGGILVVSAPDG 164 (330)
Q Consensus 142 ------~~~~~~~~~~~d~~l~vvda~~~ 164 (330)
.++..+..+.||.+++|+||+..
T Consensus 124 sqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 124 SQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred ccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 34456667789999999999864
No 335
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=3e-09 Score=85.56 Aligned_cols=146 Identities=16% Similarity=0.105 Sum_probs=94.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++++++|..|.||||++++.+...++...... -|.........-..+..++..|||.|++.+.
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at--------------~Gv~~~pl~f~tn~g~irf~~wdtagqEk~g 73 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPAT--------------LGVEVHPLLFDTNRGQIRFNVWDTAGQEKKG 73 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCc--------------ceeEEeeeeeecccCcEEEEeeecccceeec
Confidence 56789999999999999999998754333221111 0222222222112233788999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhHHHH--HHHHH-cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHI--LLARQ-VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l--~~~~~-~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
.....++-...++++++|......-.....| .+++. .++| ++++.||.|..... ++.+--.+.. ..
T Consensus 74 glrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiP-iv~cGNKvDi~~r~-----~k~k~v~~~r-----kk 142 (216)
T KOG0096|consen 74 GLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIP-IVLCGNKVDIKARK-----VKAKPVSFHR-----KK 142 (216)
T ss_pred ccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCC-eeeeccceeccccc-----cccccceeee-----cc
Confidence 8887778889999999999875554433323 23332 3578 88999999976632 1111111111 24
Q ss_pred CccEEEeecccccc
Q 020176 220 EIPIIRGSATSALQ 233 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~ 233 (330)
++.++.+||+++.|
T Consensus 143 nl~y~~iSaksn~N 156 (216)
T KOG0096|consen 143 NLQYYEISAKSNYN 156 (216)
T ss_pred cceeEEeecccccc
Confidence 57799999998643
No 336
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.89 E-value=2.4e-08 Score=83.12 Aligned_cols=116 Identities=20% Similarity=0.280 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC-eeEEEEeCCCchhhHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHADYVKN 144 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~~~~~ 144 (330)
++|.++|.+|+|||++=..+...... ...+..|-|++..+.+...-+ ..+.+||+.|++.|+.+
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a---------------~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen 69 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIA---------------RDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMEN 69 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhh---------------hhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHH
Confidence 58999999999999987766532110 011223677777666655443 67899999999988776
Q ss_pred HHH-----hhhccCeEEEEEeCCCCCchhhHHHHH----HHHHc-CCCeEEEEEeeccCcCh
Q 020176 145 MIT-----GAAQMDGGILVVSAPDGPMPQTKEHIL----LARQV-GVPSLVCFLNKVDLVED 196 (330)
Q Consensus 145 ~~~-----~~~~~d~~l~vvda~~~~~~~~~~~l~----~~~~~-~~p~iivviNK~D~~~~ 196 (330)
... .++..+++++|+|++......+..+.. .+.+. -..++++.+.|+|++..
T Consensus 70 ~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 70 YLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred HHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 655 356789999999998754444433333 33222 12337788999999974
No 337
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=3.8e-08 Score=87.26 Aligned_cols=138 Identities=18% Similarity=0.163 Sum_probs=89.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHh---cCccce--eeccccCCChhhhhcCceEEeE-EEEe---------------
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAE---EGKAKA--IAFDEIDKAPEEKKRGITIATA-HVEY--------------- 123 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~---~g~~~~--~~~~~~~~~~~e~~~g~t~~~~-~~~~--------------- 123 (330)
..-|.++|+-..||||+|+.|+..... .|.... .....+....++..+|.+.-.. ...|
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 356899999999999999999854322 121111 1111223333444444443321 0111
Q ss_pred ----e-eCCeeEEEEeCCCchh-----------hHHHHHHhhhccCeEEEEEeCCC-CCchhhHHHHHHHHHcCCCeEEE
Q 020176 124 ----E-TAKRHYAHVDCPGHAD-----------YVKNMITGAAQMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVC 186 (330)
Q Consensus 124 ----~-~~~~~i~iiDtPG~~~-----------~~~~~~~~~~~~d~~l~vvda~~-~~~~~~~~~l~~~~~~~~p~iiv 186 (330)
. .--..++|+||||.-. |.......+..+|.+++++|+.. .+..+..+.+..++...-+ +=|
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edk-iRV 216 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDK-IRV 216 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcce-eEE
Confidence 0 0124689999999433 55555556678999999999986 6778888888888876655 667
Q ss_pred EEeeccCcChHHHHHHH
Q 020176 187 FLNKVDLVEDEELLELV 203 (330)
Q Consensus 187 viNK~D~~~~~~~~~~~ 203 (330)
|+||.|.++.++++...
T Consensus 217 VLNKADqVdtqqLmRVy 233 (532)
T KOG1954|consen 217 VLNKADQVDTQQLMRVY 233 (532)
T ss_pred EeccccccCHHHHHHHH
Confidence 89999999987665543
No 338
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.4e-08 Score=96.44 Aligned_cols=102 Identities=20% Similarity=0.137 Sum_probs=66.3
Q ss_pred eeEEEEeCCC---chhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh-HHHHHHH
Q 020176 128 RHYAHVDCPG---HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED-EELLELV 203 (330)
Q Consensus 128 ~~i~iiDtPG---~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~-~~~~~~~ 203 (330)
..+.++|.|| ..++........-.+|+.+||+.+........+.++...... +|+++|+.||+|.... ++..+.+
T Consensus 206 nDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniFIlnnkwDasase~ec~e~V 284 (749)
T KOG0448|consen 206 NDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIFILNNKWDASASEPECKEDV 284 (749)
T ss_pred ccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEEEEechhhhhcccHHHHHHH
Confidence 3689999999 344555556666689999999999876666666666555444 8989999999998764 3444545
Q ss_pred HHHHHHHHHhcCCCCCCccEEEeecccc
Q 020176 204 EMELRELLSFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~pv~~~Sa~~~ 231 (330)
..++.++- -.......--++++||+.-
T Consensus 285 ~~Qi~eL~-v~~~~eA~DrvfFVS~~e~ 311 (749)
T KOG0448|consen 285 LKQIHELS-VVTEKEAADRVFFVSAKEV 311 (749)
T ss_pred HHHHHhcC-cccHhhhcCeeEEEeccch
Confidence 54443211 1001111234889997654
No 339
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.86 E-value=8.1e-09 Score=90.79 Aligned_cols=79 Identities=24% Similarity=0.211 Sum_probs=51.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC-----------------eeE
Q 020176 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-----------------RHY 130 (330)
Q Consensus 68 I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~-----------------~~i 130 (330)
|+++|.+|+|||||+|+|++.....+. .+++|++.....+...+ ..+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n----------------~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i 64 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAAN----------------YPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATI 64 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcccc----------------ccccchhceeeeEEeccchhhhHHHHhCCceeeeeEE
Confidence 589999999999999999953221111 12334333222222211 258
Q ss_pred EEEeCCCchh-------hHHHHHHhhhccCeEEEEEeCC
Q 020176 131 AHVDCPGHAD-------YVKNMITGAAQMDGGILVVSAP 162 (330)
Q Consensus 131 ~iiDtPG~~~-------~~~~~~~~~~~~d~~l~vvda~ 162 (330)
.++|+||..+ ........++.+|++++|||+.
T Consensus 65 ~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 65 EFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 9999999332 3445566778999999999985
No 340
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.84 E-value=1.3e-08 Score=95.16 Aligned_cols=118 Identities=20% Similarity=0.163 Sum_probs=79.9
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
....+||+++|.-|+||||||-+|+.......-. .. -.-+++. ..+........|+||+..++-
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP--------~r-----l~~i~IP---advtPe~vpt~ivD~ss~~~~ 69 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVP--------RR-----LPRILIP---ADVTPENVPTSIVDTSSDSDD 69 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhcccccc--------cc-----CCccccC---CccCcCcCceEEEecccccch
Confidence 3567899999999999999999998643221110 00 0122222 112223344799999987776
Q ss_pred HHHHHHhhhccCeEEEEEeCCCC--CchhhHHHHHHHHHc-----CCCeEEEEEeeccCcCh
Q 020176 142 VKNMITGAAQMDGGILVVSAPDG--PMPQTKEHILLARQV-----GVPSLVCFLNKVDLVED 196 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~--~~~~~~~~l~~~~~~-----~~p~iivviNK~D~~~~ 196 (330)
.......++.||++.++++.++. +......+|-++++. ++| +|+|.||+|....
T Consensus 70 ~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~P-VILvGNK~d~~~~ 130 (625)
T KOG1707|consen 70 RLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETP-VILVGNKSDNGDN 130 (625)
T ss_pred hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCC-EEEEeeccCCccc
Confidence 66667788999999999988762 334445566666654 478 9999999999863
No 341
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.78 E-value=5.1e-07 Score=81.46 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=81.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCC-------hhhhhcCceEEeEEEE-------e------e
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA-------PEEKKRGITIATAHVE-------Y------E 124 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~-------~~e~~~g~t~~~~~~~-------~------~ 124 (330)
...|+++|++|+||||++..|.......|........+.... ......++.+...... + .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999987776665443332222111 1122334333221100 0 1
Q ss_pred eCCeeEEEEeCCCchh----hHHHHHHhh--------hccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeecc
Q 020176 125 TAKRHYAHVDCPGHAD----YVKNMITGA--------AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (330)
Q Consensus 125 ~~~~~i~iiDtPG~~~----~~~~~~~~~--------~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D 192 (330)
..+..++||||||... .+.+..... ..++..++|+|++.+..... ....+....++- - +|+||+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a~~f~~~~~~~-g-iIlTKlD 270 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QAKAFHEAVGLT-G-IILTKLD 270 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HHHHHHhhCCCC-E-EEEECCC
Confidence 2456899999999432 222222211 24678899999986532222 222222334444 3 6799999
Q ss_pred CcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEee
Q 020176 193 LVEDEELLELVEMELRELLSFYKFPGDEIPIIRGS 227 (330)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~S 227 (330)
....-. .+-.++..++ .|+..++
T Consensus 271 ~t~~~G-------~~l~~~~~~~-----~Pi~~v~ 293 (318)
T PRK10416 271 GTAKGG-------VVFAIADELG-----IPIKFIG 293 (318)
T ss_pred CCCCcc-------HHHHHHHHHC-----CCEEEEe
Confidence 765321 1122233333 6888887
No 342
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.78 E-value=1.6e-07 Score=84.93 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=53.9
Q ss_pred EEeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCC--------c---hhhHHHHHHHHH----cCCCeEE
Q 020176 121 VEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP--------M---PQTKEHILLARQ----VGVPSLV 185 (330)
Q Consensus 121 ~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~--------~---~~~~~~l~~~~~----~~~p~ii 185 (330)
..+...+..+.+||++|+....+.|..++..++++++|+|.++-. . .+....+..+.. .+.| ++
T Consensus 154 ~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~p-il 232 (317)
T cd00066 154 TKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTS-II 232 (317)
T ss_pred EEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCC-EE
Confidence 344556788999999999999999999999999999999998621 1 122222222221 3567 88
Q ss_pred EEEeeccCcC
Q 020176 186 CFLNKVDLVE 195 (330)
Q Consensus 186 vviNK~D~~~ 195 (330)
+++||.|+..
T Consensus 233 l~~NK~D~f~ 242 (317)
T cd00066 233 LFLNKKDLFE 242 (317)
T ss_pred EEccChHHHH
Confidence 9999999754
No 343
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.77 E-value=1.1e-07 Score=88.19 Aligned_cols=127 Identities=19% Similarity=0.185 Sum_probs=73.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCC-hhh------hhcCceEEeEEEEe-------------e
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA-PEE------KKRGITIATAHVEY-------------E 124 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~-~~e------~~~g~t~~~~~~~~-------------~ 124 (330)
...|+++|.+|+||||++..|.......|........+..+. ..+ ...++.+....... .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999877766676544443222111 111 11222221110000 1
Q ss_pred eCCeeEEEEeCCCch----hhHHHHHHhh--hccCeEEEEEeCCCCCchhhHHHHHHHHH-cCCCeEEEEEeeccCcC
Q 020176 125 TAKRHYAHVDCPGHA----DYVKNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQ-VGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 125 ~~~~~i~iiDtPG~~----~~~~~~~~~~--~~~d~~l~vvda~~~~~~~~~~~l~~~~~-~~~p~iivviNK~D~~~ 195 (330)
..++.++||||||.. +.+.++.... ..+|-+++|+|+..|... ......... .++. - +++||+|...
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~-g-~IlTKlD~~a 253 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVG-S-VIITKLDGHA 253 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCc-E-EEEECccCCC
Confidence 135789999999943 3444443332 257889999999865332 223333322 3444 3 6799999764
No 344
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.1e-07 Score=85.35 Aligned_cols=89 Identities=22% Similarity=0.254 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEE-------ee----eCCeeEEEEe
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVE-------YE----TAKRHYAHVD 134 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~-------~~----~~~~~i~iiD 134 (330)
++++|+|-||+|||||.|+|+....+.....+ ++.+...|+..-.. .. +. .-...+.|+|
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF--------~TIePN~Giv~v~d-~rl~~L~~~~~c~~k~~~~~ve~vD 73 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPF--------CTIEPNVGVVYVPD-CRLDELAEIVKCPPKIRPAPVEFVD 73 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCc--------ccccCCeeEEecCc-hHHHHHHHhcCCCCcEEeeeeEEEE
Confidence 58999999999999999999965332222222 11222222211100 00 00 1123578999
Q ss_pred CCCchh-------hHHHHHHhhhccCeEEEEEeCCC
Q 020176 135 CPGHAD-------YVKNMITGAAQMDGGILVVSAPD 163 (330)
Q Consensus 135 tPG~~~-------~~~~~~~~~~~~d~~l~vvda~~ 163 (330)
.+|.-. +-...+.-++.+|+++.|||+.+
T Consensus 74 IAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 74 IAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 999332 45566677888999999999874
No 345
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.76 E-value=9.4e-08 Score=77.42 Aligned_cols=92 Identities=23% Similarity=0.222 Sum_probs=63.9
Q ss_pred HHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEE
Q 020176 145 MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPII 224 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 224 (330)
....++.+|++++|+|+.++...+..+....+...++| +++|+||+|+.+.... + +...+.+.. ..|++
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~~~~-~----~~~~~~~~~-----~~~~~ 74 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKK-LLIVLNKADLVPKEVL-E----KWKSIKESE-----GIPVV 74 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCc-EEEEEEhHHhCCHHHH-H----HHHHHHHhC-----CCcEE
Confidence 34455679999999999876666665555556666888 8899999999764321 1 111222222 25799
Q ss_pred EeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 225 RGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 225 ~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
++||+++ .++.+|++.+.+.+|.
T Consensus 75 ~iSa~~~----------~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 75 YVSAKER----------LGTKILRRTIKELAKI 97 (156)
T ss_pred EEEcccc----------ccHHHHHHHHHHHHhh
Confidence 9999986 4688888888887763
No 346
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.73 E-value=5.6e-08 Score=81.61 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh-hh------hhcCceEEeEEE-------------Eeee
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-EE------KKRGITIATAHV-------------EYET 125 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~-~e------~~~g~t~~~~~~-------------~~~~ 125 (330)
..|+++|++|+||||.+-.|.......++.....+.+..+.. .+ +..++....... .+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 368999999999999999998766655655544432222111 11 111332211100 0112
Q ss_pred CCeeEEEEeCCCchhh----HHHHHHhhh--ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh
Q 020176 126 AKRHYAHVDCPGHADY----VKNMITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~----~~~~~~~~~--~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~ 196 (330)
++.+++||||||.... ..++...+. ..+-+++|++++.+... ...........++..+ ++||+|....
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~-~~~~~~~~~~~~~~~l--IlTKlDet~~ 155 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED-LEQALAFYEAFGIDGL--ILTKLDETAR 155 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH-HHHHHHHHHHSSTCEE--EEESTTSSST
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH-HHHHHHHhhcccCceE--EEEeecCCCC
Confidence 3467999999994332 333322222 56789999999875332 2244455556677734 5899999864
No 347
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.73 E-value=9.8e-08 Score=68.63 Aligned_cols=62 Identities=23% Similarity=0.316 Sum_probs=55.4
Q ss_pred EEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 268 MPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 268 ~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
..|.++|.++..|+++.|+|.+|.|++|+.+.+.|.+.. .+..+|+||+++++.+++|.+|+
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~-~~~g~i~sl~~~~~~v~~a~~G~ 64 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEV-IYEGKISSLKRFKDDVKEVKKGY 64 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCE-EEEEEEEEEEEcCcccCEECCCC
Confidence 568889988888999999999999999999999997642 35789999999999999999985
No 348
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.71 E-value=4e-07 Score=83.09 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=55.2
Q ss_pred EEEeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCC-----------chhhHHHHHHHHH----cCCCeE
Q 020176 120 HVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-----------MPQTKEHILLARQ----VGVPSL 184 (330)
Q Consensus 120 ~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~-----------~~~~~~~l~~~~~----~~~p~i 184 (330)
...+...+..+.+||.+|+....+.|..++..+++++||+|.++-. ..+....+..+.. .+.| +
T Consensus 176 ~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~p-i 254 (342)
T smart00275 176 ETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTS-I 254 (342)
T ss_pred EEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCc-E
Confidence 3345566778999999999999999999999999999999998621 1222333333221 2567 8
Q ss_pred EEEEeeccCcC
Q 020176 185 VCFLNKVDLVE 195 (330)
Q Consensus 185 ivviNK~D~~~ 195 (330)
++++||.|+..
T Consensus 255 il~~NK~D~~~ 265 (342)
T smart00275 255 ILFLNKIDLFE 265 (342)
T ss_pred EEEEecHHhHH
Confidence 89999999864
No 349
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.71 E-value=2.8e-07 Score=81.40 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=72.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh-h------hhhcCceEEeEEE-----E--------ee
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-E------EKKRGITIATAHV-----E--------YE 124 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~-~------e~~~g~t~~~~~~-----~--------~~ 124 (330)
...|+++|++|+||||++..|.......|........+..+.. . ....++.+..... . ..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~ 151 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK 151 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999998777666654443322211110 1 1222332211000 0 01
Q ss_pred eCCeeEEEEeCCCchhh----HHHHHH---hhh-----ccCeEEEEEeCCCCCchhhHHHH-HHHHHcCCCeEEEEEeec
Q 020176 125 TAKRHYAHVDCPGHADY----VKNMIT---GAA-----QMDGGILVVSAPDGPMPQTKEHI-LLARQVGVPSLVCFLNKV 191 (330)
Q Consensus 125 ~~~~~i~iiDtPG~~~~----~~~~~~---~~~-----~~d~~l~vvda~~~~~~~~~~~l-~~~~~~~~p~iivviNK~ 191 (330)
..++.++||||||.... +.+... ... .+|..++|+|+..+. ...... .+....++- - +++||+
T Consensus 152 ~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~~~-g-~IlTKl 227 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQAKVFNEAVGLT-G-IILTKL 227 (272)
T ss_pred HCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHHHHHHhhCCCC-E-EEEEcc
Confidence 24578999999995432 222211 111 389999999997542 222222 333345554 3 579999
Q ss_pred cCcCh
Q 020176 192 DLVED 196 (330)
Q Consensus 192 D~~~~ 196 (330)
|....
T Consensus 228 De~~~ 232 (272)
T TIGR00064 228 DGTAK 232 (272)
T ss_pred CCCCC
Confidence 98763
No 350
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.70 E-value=3.4e-07 Score=75.51 Aligned_cols=127 Identities=19% Similarity=0.221 Sum_probs=70.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh-hh------hhcCceEEeEEEE-------------eeeC
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-EE------KKRGITIATAHVE-------------YETA 126 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~-~e------~~~g~t~~~~~~~-------------~~~~ 126 (330)
.++++|++|+||||++..|.....+.|........+..+.. .+ ...+..+...... ....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 36899999999999999998777666654333221111111 10 1112221111000 0123
Q ss_pred CeeEEEEeCCCch----hhHHHHHHhh--hccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh
Q 020176 127 KRHYAHVDCPGHA----DYVKNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 127 ~~~i~iiDtPG~~----~~~~~~~~~~--~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~ 196 (330)
+..++|+||||.. +......... ...|.+++|+|+..+. ........+....++- -+|+||+|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~-~~~~~~~~~~~~~~~~--~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ-DAVNQAKAFNEALGIT--GVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh-HHHHHHHHHHhhCCCC--EEEEECCcCCCC
Confidence 5678999999975 3333332222 2489999999996432 2222233333445644 357899998764
No 351
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.70 E-value=5.7e-08 Score=78.83 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=38.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (330)
...+|+++|.+|+|||||+|+|.+ ...... ....|.|........ +..+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~------~~~~~~---------~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRS------KKVCKV---------APIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhc------CCceee---------CCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 457899999999999999999983 222222 122366665544332 245899999993
No 352
>PRK14974 cell division protein FtsY; Provisional
Probab=98.68 E-value=4.5e-07 Score=82.11 Aligned_cols=129 Identities=21% Similarity=0.207 Sum_probs=73.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCC-h------hhhhcCceEEeEEEE-------------e
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA-P------EEKKRGITIATAHVE-------------Y 123 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~-~------~e~~~g~t~~~~~~~-------------~ 123 (330)
+...|+++|.+|+||||++..|.......|........+..+. . .....|..+...... .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999887766665433322111111 0 011123222111000 0
Q ss_pred eeCCeeEEEEeCCCch----hhHHHHHHhh--hccCeEEEEEeCCCCCchhhHHHHHHH-HHcCCCeEEEEEeeccCcCh
Q 020176 124 ETAKRHYAHVDCPGHA----DYVKNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLA-RQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 124 ~~~~~~i~iiDtPG~~----~~~~~~~~~~--~~~d~~l~vvda~~~~~~~~~~~l~~~-~~~~~p~iivviNK~D~~~~ 196 (330)
...+..++||||||.. +++.++.... ...|..++|+|+..+- ...+..... ...++. - +++||+|....
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~-g-iIlTKlD~~~~ 294 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGID-G-VILTKVDADAK 294 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCC-E-EEEeeecCCCC
Confidence 1234579999999954 2344433222 2579999999997642 222223332 235666 4 57999998763
No 353
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.67 E-value=2.1e-07 Score=74.63 Aligned_cols=117 Identities=20% Similarity=0.237 Sum_probs=66.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCC-----------hh-h--hhcCceEEeEEE------------
Q 020176 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA-----------PE-E--KKRGITIATAHV------------ 121 (330)
Q Consensus 68 I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~-----------~~-e--~~~g~t~~~~~~------------ 121 (330)
|.++|..|+|||||+..|.......|........+.... .. + ...+........
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATP 81 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhHH
Confidence 789999999999999999887766665333221111000 00 0 001111100000
Q ss_pred ----EeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeecc
Q 020176 122 ----EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (330)
Q Consensus 122 ----~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D 192 (330)
.....+..+.|+||||..... ...+..+|.+++|..... . +...+.....+...++ +++||+|
T Consensus 82 ~~~~~~~~~~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~---~-D~y~~~k~~~~~~~~~-~~~~k~~ 148 (148)
T cd03114 82 EVIRVLDAAGFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGA---G-DDIQAIKAGIMEIADI-VVVNKAD 148 (148)
T ss_pred HHHHHHHhcCCCEEEEECCccChhh---hhHHHhCCEEEEEECCCc---h-hHHHHhhhhHhhhcCE-EEEeCCC
Confidence 001235789999999965333 346778999999998862 2 2222222233444435 6899998
No 354
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.65 E-value=8.7e-08 Score=78.76 Aligned_cols=57 Identities=21% Similarity=0.430 Sum_probs=40.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (330)
...+++++|.+|+|||||+|+|++ ...... ...+|+|.......++ ..+.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~------~~~~~~---------~~~pg~T~~~~~~~~~---~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKR------SRACNV---------GATPGVTKSMQEVHLD---KKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhC------ccccee---------cCCCCeEcceEEEEeC---CCEEEEECcCC
Confidence 347999999999999999999993 222221 2235777766555442 46899999993
No 355
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.64 E-value=3e-07 Score=84.11 Aligned_cols=129 Identities=19% Similarity=0.172 Sum_probs=71.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHH-hcCc-cce-eeccccCCChhhh------hcCceEEeEEEE-------eeeCCe
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLA-EEGK-AKA-IAFDEIDKAPEEK------KRGITIATAHVE-------YETAKR 128 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~-~~g~-~~~-~~~~~~~~~~~e~------~~g~t~~~~~~~-------~~~~~~ 128 (330)
...++++|++|+||||++..|..... ..|. ... +..+.......|. ..|+........ ....+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 35889999999999999999987644 3342 222 2211111111111 123333221110 122457
Q ss_pred eEEEEeCCCch---hhHHHHHHhhhc---cCeEEEEEeCCCCCchhhHHHHHHHHHc--------CCCeEEEEEeeccCc
Q 020176 129 HYAHVDCPGHA---DYVKNMITGAAQ---MDGGILVVSAPDGPMPQTKEHILLARQV--------GVPSLVCFLNKVDLV 194 (330)
Q Consensus 129 ~i~iiDtPG~~---~~~~~~~~~~~~---~d~~l~vvda~~~~~~~~~~~l~~~~~~--------~~p~iivviNK~D~~ 194 (330)
.++||||||.. ++..+....+.. ++-.++|++++.+..........+.... ++. - +++||+|..
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~-~-~I~TKlDEt 294 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLA-G-CILTKLDEA 294 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCC-E-EEEeccccC
Confidence 89999999955 333344444433 3456899999876544433333333332 233 2 468999987
Q ss_pred C
Q 020176 195 E 195 (330)
Q Consensus 195 ~ 195 (330)
.
T Consensus 295 ~ 295 (374)
T PRK14722 295 S 295 (374)
T ss_pred C
Confidence 6
No 356
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.63 E-value=3e-07 Score=65.28 Aligned_cols=63 Identities=38% Similarity=0.460 Sum_probs=56.1
Q ss_pred eEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 266 ~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
++++|.+++.+++.|++++|+|.+|+|++||.+.+.+.. .....+|++|+.++.+++++.||+
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~--~~~~~~i~~i~~~~~~~~~~~aG~ 63 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGG--GGVKGKVKSLKRFKGEVDEAVAGD 63 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCC--ceeEEEEeEeEecCceeceecCCC
Confidence 468899999999999999999999999999999988742 255799999999999999999985
No 357
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.61 E-value=4.6e-07 Score=75.12 Aligned_cols=140 Identities=25% Similarity=0.334 Sum_probs=70.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh--hh--hhcCceEEe-EEE--------Ee--------ee
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP--EE--KKRGITIAT-AHV--------EY--------ET 125 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~--~e--~~~g~t~~~-~~~--------~~--------~~ 125 (330)
.+.|.|..|||||||++.|+. ....+........+..... .+ ...|..+.. ... .+ ..
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 467999999999999999997 3334443333222221111 11 111222111 000 00 11
Q ss_pred C--CeeEEEEeCCCchhhHHH-----HHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHH
Q 020176 126 A--KRHYAHVDCPGHADYVKN-----MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEE 198 (330)
Q Consensus 126 ~--~~~i~iiDtPG~~~~~~~-----~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~ 198 (330)
. ...+.||.+.|..+-... ........+.++.|+|+..-........ ....+....++ +++||+|+++.++
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~-~~~~Qi~~ADv-IvlnK~D~~~~~~ 158 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPE-LLREQIAFADV-IVLNKIDLVSDEQ 158 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCH-HHHHHHCT-SE-EEEE-GGGHHHH-
T ss_pred cCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchh-hhhhcchhcCE-EEEeccccCChhh
Confidence 2 457899999994442222 1222335688999999965311222211 22333444546 6899999998653
Q ss_pred HHHHHHHHHHH
Q 020176 199 LLELVEMELRE 209 (330)
Q Consensus 199 ~~~~~~~~~~~ 209 (330)
..+.+.+.+++
T Consensus 159 ~i~~~~~~ir~ 169 (178)
T PF02492_consen 159 KIERVREMIRE 169 (178)
T ss_dssp -HHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 358
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.61 E-value=3.4e-07 Score=83.46 Aligned_cols=129 Identities=19% Similarity=0.207 Sum_probs=74.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCC-Chhhh------hcCceEEeEEE---------Eee-eCC
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDK-APEEK------KRGITIATAHV---------EYE-TAK 127 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~-~~~e~------~~g~t~~~~~~---------~~~-~~~ 127 (330)
..+|+++|++|+||||++..|.......|........+..+ ...++ ..++.+....- .+. ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 36899999999999999999987766656444333222111 01111 11222211100 001 113
Q ss_pred eeEEEEeCCCchh----hHHHHHHhhh--ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh
Q 020176 128 RHYAHVDCPGHAD----YVKNMITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 128 ~~i~iiDtPG~~~----~~~~~~~~~~--~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~ 196 (330)
..++||||||... .+.++...+. ..|.++||+|++.+. ....+.+......++.. +++||+|....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~idg--lI~TKLDET~k 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHIDG--IVFTKFDETAS 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCCCCE--EEEEcccCCCC
Confidence 5899999999432 3444444332 467789999986432 22244555555567763 46899998763
No 359
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.58 E-value=4e-07 Score=76.29 Aligned_cols=106 Identities=17% Similarity=0.099 Sum_probs=65.3
Q ss_pred CCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHH-HHHHhc
Q 020176 136 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELR-ELLSFY 214 (330)
Q Consensus 136 PG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~-~~~~~~ 214 (330)
|.+..|...+..++..+|++++|+|+.+.......+. .....+.| +++|+||+|+.+.+...+....... ...+..
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~-~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNP-VILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhH--HHhcCCCc-EEEEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence 3344467777778889999999999987543333222 12234667 7899999999753321121211110 111222
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+. ...+++++||+++ .++.+|++.+...++
T Consensus 96 ~~--~~~~i~~vSA~~~----------~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GL--KPKDVILISAKKG----------WGVEELINAIKKLAK 125 (190)
T ss_pred CC--CcccEEEEECCCC----------CCHHHHHHHHHHHhh
Confidence 22 1136899999987 468889999888775
No 360
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.55 E-value=1.3e-06 Score=75.09 Aligned_cols=86 Identities=12% Similarity=-0.076 Sum_probs=52.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHH--HHhcCccceeeccccCCChhhhhcCceEEeEEEEeee---CCeeEEEEeCCC
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKV--LAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET---AKRHYAHVDCPG 137 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~--~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~---~~~~i~iiDtPG 137 (330)
.+...|+|+|++++|||||+|.|++. .+..+... ..+|.......... .+..+.++||||
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~---------------~~~T~gi~~~~~~~~~~~~~~v~~lDteG 69 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTS---------------QQTTKGIWMWSVPFKLGKEHAVLLLDTEG 69 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCC---------------CCCccceEEEeccccCCCcceEEEEecCC
Confidence 45568999999999999999999953 11111100 12222222221222 357899999999
Q ss_pred chhh------HHHHHHhhhc--cCeEEEEEeCCC
Q 020176 138 HADY------VKNMITGAAQ--MDGGILVVSAPD 163 (330)
Q Consensus 138 ~~~~------~~~~~~~~~~--~d~~l~vvda~~ 163 (330)
..+. ......++.. +|++|+.++...
T Consensus 70 ~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 70 TDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 5432 2333444444 899988888754
No 361
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.55 E-value=5.2e-07 Score=73.16 Aligned_cols=89 Identities=19% Similarity=0.089 Sum_probs=57.0
Q ss_pred HHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccE
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPI 223 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 223 (330)
...+..+|.+++|+|+..+...........+... ++| +++|+||+|+.++++ +...+..+.+.+. +-+
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~~~~~----~~~~~~~~~~~~~-----~~~ 72 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKH-LIFVLNKCDLVPTWV----TARWVKILSKEYP-----TIA 72 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCC-EEEEEEchhcCCHHH----HHHHHHHHhcCCc-----EEE
Confidence 4567789999999999887655555555555543 377 778999999986532 2212222222211 226
Q ss_pred EEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 224 IRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 224 ~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+++||+.+ .++.+|++.+..+
T Consensus 73 ~~iSa~~~----------~~~~~L~~~l~~~ 93 (157)
T cd01858 73 FHASINNP----------FGKGSLIQLLRQF 93 (157)
T ss_pred EEeecccc----------ccHHHHHHHHHHH
Confidence 88999886 3466667666654
No 362
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.53 E-value=7.9e-07 Score=73.21 Aligned_cols=99 Identities=19% Similarity=0.181 Sum_probs=65.0
Q ss_pred CCCchh-hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHh
Q 020176 135 CPGHAD-YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (330)
Q Consensus 135 tPG~~~-~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~ 213 (330)
-|||.. .+.++...+..+|.+++|+|+.++........+..+ .+.| .++|+||+|+.+.+. .. ...+.++.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~-~ilVlNK~Dl~~~~~----~~-~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKP-RIIVLNKADLADPKK----TK-KWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCC-EEEEEehhhcCChHH----HH-HHHHHHHh
Confidence 477644 567778888999999999999876554444433332 3567 778999999976422 11 12223332
Q ss_pred cCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 214 ~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
.+ .+++++||+++ .++.+|++.+...++
T Consensus 74 ~~-----~~vi~iSa~~~----------~gi~~L~~~l~~~l~ 101 (171)
T cd01856 74 KG-----EKVLFVNAKSG----------KGVKKLLKAAKKLLK 101 (171)
T ss_pred cC-----CeEEEEECCCc----------ccHHHHHHHHHHHHH
Confidence 22 45899999986 357777777776553
No 363
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.52 E-value=5.8e-06 Score=74.44 Aligned_cols=80 Identities=24% Similarity=0.297 Sum_probs=57.9
Q ss_pred eEEeEEEEeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCc--------hhhHHHHHHHHH-------c
Q 020176 115 TIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM--------PQTKEHILLARQ-------V 179 (330)
Q Consensus 115 t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~--------~~~~~~l~~~~~-------~ 179 (330)
|.......+...+..+.++|.+|+..-.+.|......++++|||++.++-.+ ..-.+.+.+... .
T Consensus 182 T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~ 261 (354)
T KOG0082|consen 182 TTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA 261 (354)
T ss_pred cCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence 3444555667778899999999999999999999999999999999876211 112233333321 1
Q ss_pred CCCeEEEEEeeccCcC
Q 020176 180 GVPSLVCFLNKVDLVE 195 (330)
Q Consensus 180 ~~p~iivviNK~D~~~ 195 (330)
+.+ +|+++||.|+..
T Consensus 262 ~ts-iiLFLNK~DLFe 276 (354)
T KOG0082|consen 262 NTS-IILFLNKKDLFE 276 (354)
T ss_pred cCc-EEEEeecHHHHH
Confidence 455 999999999875
No 364
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.50 E-value=1e-06 Score=70.06 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=56.5
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
++....+..+|++++|+|+..+...+..+....+... ++| +++|+||+|+.++++ +. ++.+.++..+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~-~iivlNK~DL~~~~~----~~-~~~~~~~~~~----- 71 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKK-NILLLNKADLLTEEQ----RK-AWAEYFKKEG----- 71 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCc-EEEEEechhcCCHHH----HH-HHHHHHHhcC-----
Confidence 4566778899999999999887776666666666665 778 788999999986432 11 3334444433
Q ss_pred ccEEEeecccc
Q 020176 221 IPIIRGSATSA 231 (330)
Q Consensus 221 ~pv~~~Sa~~~ 231 (330)
.+++++||+++
T Consensus 72 ~~ii~iSa~~~ 82 (141)
T cd01857 72 IVVVFFSALKE 82 (141)
T ss_pred CeEEEEEecCC
Confidence 46899999875
No 365
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.49 E-value=1.8e-06 Score=71.10 Aligned_cols=126 Identities=19% Similarity=0.334 Sum_probs=71.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEE-------------------------
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHV------------------------- 121 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~------------------------- 121 (330)
-+.++|+.|+||||+++.+.......|+..-.+. .|...+.-....+++....
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVN--LDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl 82 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVN--LDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYL 82 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEEee--cCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHH
Confidence 4678999999999999999877766676544332 1211111111122211000
Q ss_pred ----Ee---e--eCCeeEEEEeCCCchh------hHHHHHHhhhccC---eEEEEEeCCCCCc------hhhHHHHHHHH
Q 020176 122 ----EY---E--TAKRHYAHVDCPGHAD------YVKNMITGAAQMD---GGILVVSAPDGPM------PQTKEHILLAR 177 (330)
Q Consensus 122 ----~~---~--~~~~~i~iiDtPG~~~------~~~~~~~~~~~~d---~~l~vvda~~~~~------~~~~~~l~~~~ 177 (330)
.| + .-+..+.++|+||+.+ .+.+....+.+-+ ++++++|+.- +. ......+....
T Consensus 83 ~~NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf-~vD~~KfiSG~lsAlsAMi 161 (273)
T KOG1534|consen 83 LENLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQF-LVDSTKFISGCLSALSAMI 161 (273)
T ss_pred HHHHHHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccch-hhhHHHHHHHHHHHHHHHH
Confidence 00 1 1135789999999544 3555555554422 4677777742 11 11222333444
Q ss_pred HcCCCeEEEEEeeccCcCh
Q 020176 178 QVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 178 ~~~~p~iivviNK~D~~~~ 196 (330)
.+.+|++ =|++|||+...
T Consensus 162 ~lE~P~I-NvlsKMDLlk~ 179 (273)
T KOG1534|consen 162 SLEVPHI-NVLSKMDLLKD 179 (273)
T ss_pred HhcCcch-hhhhHHHHhhh
Confidence 6789954 78999999874
No 366
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.49 E-value=1.3e-07 Score=76.15 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH-HhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVL-AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~-~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
..++++|++|+|||||+|+|.... ...+... ....+.+.+|.....+.++ ....+|||||..++
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is---------~~~~rGkHTTt~~~l~~l~---~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEIS---------EKTGRGKHTTTHRELFPLP---DGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S-----------------------SEEEEEET---TSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhh---------cccCCCcccCCCeeEEecC---CCcEEEECCCCCcc
Confidence 378999999999999999998431 1111100 0111222334333344442 24689999997664
No 367
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.49 E-value=1.1e-06 Score=78.10 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=65.2
Q ss_pred CCchh-hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 136 PGHAD-YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 136 PG~~~-~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
|||.. ..+++...+..+|++++|+|+..+...........+ .+.| +|+|+||+|+.+.... . ...+.++..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp-~IiVlNK~DL~~~~~~----~-~~~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKP-RLIVLNKADLADPAVT----K-QWLKYFEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCC-EEEEEEccccCCHHHH----H-HHHHHHHHc
Confidence 88765 566777888899999999999876655554444443 2567 7799999999764321 1 222223332
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+ .+++++||+++ .++..|++.+.+.++
T Consensus 77 ~-----~~vi~iSa~~~----------~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 77 G-----IKALAINAKKG----------KGVKKIIKAAKKLLK 103 (276)
T ss_pred C-----CeEEEEECCCc----------ccHHHHHHHHHHHHH
Confidence 2 47899999886 346666666666554
No 368
>PRK10867 signal recognition particle protein; Provisional
Probab=98.49 E-value=7.3e-06 Score=76.73 Aligned_cols=127 Identities=18% Similarity=0.206 Sum_probs=71.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhc-CccceeeccccCCChh-------hhhcCceEEeEEEE-------------e
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEE-GKAKAIAFDEIDKAPE-------EKKRGITIATAHVE-------------Y 123 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~-g~~~~~~~~~~~~~~~-------e~~~g~t~~~~~~~-------------~ 123 (330)
...|+++|.+|+||||++..|....... |........+..+... ....++.+...... .
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998776666 6554443322222111 11223322211000 0
Q ss_pred eeCCeeEEEEeCCCch----hhHHHHHHh--hhccCeEEEEEeCCCCCchhhHHHHHHHH-HcCCCeEEEEEeeccCcC
Q 020176 124 ETAKRHYAHVDCPGHA----DYVKNMITG--AAQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 124 ~~~~~~i~iiDtPG~~----~~~~~~~~~--~~~~d~~l~vvda~~~~~~~~~~~l~~~~-~~~~p~iivviNK~D~~~ 195 (330)
...+..++|+||||.. ....+.... ...++.+++|+|+..+ ....+...... ..++. -+|+||+|...
T Consensus 180 ~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~~~~i~--giIlTKlD~~~ 254 (433)
T PRK10867 180 KENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNEALGLT--GVILTKLDGDA 254 (433)
T ss_pred HhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHhhCCCC--EEEEeCccCcc
Confidence 1234679999999943 334333222 2257888999998653 22222222222 23444 35789999654
No 369
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.48 E-value=3.5e-07 Score=77.60 Aligned_cols=84 Identities=21% Similarity=0.173 Sum_probs=58.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh-----
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD----- 140 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~----- 140 (330)
-++.++|.|.+|||||+..|++. .....+. .++|.........+.+-++.+.|.||..+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~------~s~vasy----------efttl~~vpG~~~y~gaKiqlldlpgiiegakdg 123 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGT------FSEVAAY----------EFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDG 123 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCC------CCccccc----------cceeEEEecceEeccccceeeecCcchhcccccC
Confidence 48999999999999999999842 2111111 13344333344456678899999999655
Q ss_pred --hHHHHHHhhhccCeEEEEEeCCCCC
Q 020176 141 --YVKNMITGAAQMDGGILVVSAPDGP 165 (330)
Q Consensus 141 --~~~~~~~~~~~~d~~l~vvda~~~~ 165 (330)
-.++.+...+.|+.+++|+|+..++
T Consensus 124 kgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 124 KGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred CCCccEEEEEeecccEEEEEeeccCcc
Confidence 2345566677899999999987643
No 370
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.48 E-value=2.3e-06 Score=74.97 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=46.1
Q ss_pred cCCCeEEEEEeeccCcC--------hHHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHH
Q 020176 179 VGVPSLVCFLNKVDLVE--------DEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDA 250 (330)
Q Consensus 179 ~~~p~iivviNK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~ 250 (330)
+|+| ++||++|+|... .++.++.++..++.++-++|. ..|.+|++.. .+++-|..+
T Consensus 221 lGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-----aLiyTSvKE~----------KNidllyKY 284 (473)
T KOG3905|consen 221 LGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-----ALIYTSVKET----------KNIDLLYKY 284 (473)
T ss_pred CCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-----eeEEeecccc----------cchHHHHHH
Confidence 5778 889999999854 245667788889999999884 5899999875 346667777
Q ss_pred HhhhC
Q 020176 251 VDEYI 255 (330)
Q Consensus 251 l~~~~ 255 (330)
|....
T Consensus 285 ivhr~ 289 (473)
T KOG3905|consen 285 IVHRS 289 (473)
T ss_pred HHHHh
Confidence 76543
No 371
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.48 E-value=3.5e-07 Score=72.78 Aligned_cols=54 Identities=24% Similarity=0.366 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (330)
+++++|.+|+|||||+|+|++. ..... ....|.|.......++ ..+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~------~~~~~---------~~~~~~~~~~~~~~~~---~~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK------KKVSV---------SATPGKTKHFQTIFLT---PTITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC------Cceee---------CCCCCcccceEEEEeC---CCEEEEECCCc
Confidence 8999999999999999999842 11111 1122444444443332 26899999995
No 372
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.47 E-value=1.8e-06 Score=72.28 Aligned_cols=127 Identities=18% Similarity=0.323 Sum_probs=71.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChh-----------------hhhcCceEEeE----------E
Q 020176 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPE-----------------EKKRGITIATA----------H 120 (330)
Q Consensus 68 I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~-----------------e~~~g~t~~~~----------~ 120 (330)
.+|+|+||+||||.++.+.......|+...++.-++..... ..+.+..-... .
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~ 84 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEAN 84 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhh
Confidence 46899999999999999988888888866655432211110 00000000000 0
Q ss_pred E-----EeeeCCeeEEEEeCCCchh------hHHHHHHhhhccCeEEEE---EeCCCCCch-----hhHHHHHHHHHcCC
Q 020176 121 V-----EYETAKRHYAHVDCPGHAD------YVKNMITGAAQMDGGILV---VSAPDGPMP-----QTKEHILLARQVGV 181 (330)
Q Consensus 121 ~-----~~~~~~~~i~iiDtPG~~~------~~~~~~~~~~~~d~~l~v---vda~~~~~~-----~~~~~l~~~~~~~~ 181 (330)
. .++.....+.++|+||+.+ -.......+...|+-+.+ +|+.-...+ ...-.+.-...+..
T Consensus 85 idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~mel 164 (290)
T KOG1533|consen 85 IDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMEL 164 (290)
T ss_pred hHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcc
Confidence 0 1122346789999999554 355566666666665444 444321111 11112222345678
Q ss_pred CeEEEEEeeccCcC
Q 020176 182 PSLVCFLNKVDLVE 195 (330)
Q Consensus 182 p~iivviNK~D~~~ 195 (330)
|++ =|+.|+|+..
T Consensus 165 phV-NvlSK~Dl~~ 177 (290)
T KOG1533|consen 165 PHV-NVLSKADLLK 177 (290)
T ss_pred cch-hhhhHhHHHH
Confidence 966 6899999875
No 373
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.46 E-value=2.3e-07 Score=77.72 Aligned_cols=63 Identities=24% Similarity=0.233 Sum_probs=41.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (330)
.+++++|.+|+|||||+|+|.+......+. .........+|+|.......+.. .+.++||||.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~-------~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKL-------KDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhccccccc-------ccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 589999999999999999999642211100 00011223347888776665532 5799999994
No 374
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.46 E-value=5e-08 Score=78.37 Aligned_cols=147 Identities=16% Similarity=0.118 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC-CeeEEEEeCCCchhhHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~~~~~ 144 (330)
.++.|+|.-++|||+++.+.....++......+ |.........|+.. -.++.+||..|+++|...
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtI--------------gvdfalkVl~wdd~t~vRlqLwdIagQerfg~m 91 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATI--------------GVDFALKVLQWDDKTIVRLQLWDIAGQERFGNM 91 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHH--------------hHHHHHHHhccChHHHHHHHHhcchhhhhhcce
Confidence 578999999999999999988655443221111 11111111122211 245789999999999888
Q ss_pred HHHhhhccCeEEEEEeCCCCCchhhHHHHH-HHH-----HcC--CCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPMPQTKEHIL-LAR-----QVG--VPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~~~~~~l~-~~~-----~~~--~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
+.-+++.++++.+|+|.+.........-|. .+. ..| +| +++..||||.-.... ..-..++.++.+..|+
T Consensus 92 trVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~-~vllankCd~e~~a~--~~~~~~~d~f~kengf 168 (229)
T KOG4423|consen 92 TRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVP-CVLLANKCDQEKSAK--NEATRQFDNFKKENGF 168 (229)
T ss_pred EEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcch-heeccchhccChHhh--hhhHHHHHHHHhccCc
Confidence 888889999999999998865543332222 221 123 44 677789999875321 2222366777777776
Q ss_pred CCCCccEEEeecccccc
Q 020176 217 PGDEIPIIRGSATSALQ 233 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~ 233 (330)
.-++.+|++...+
T Consensus 169 ----~gwtets~Kenkn 181 (229)
T KOG4423|consen 169 ----EGWTETSAKENKN 181 (229)
T ss_pred ----cceeeeccccccC
Confidence 5689999998754
No 375
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.44 E-value=1.2e-06 Score=71.17 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=36.3
Q ss_pred CeeEEEEeCCCchh---hHHH-----HHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccC
Q 020176 127 KRHYAHVDCPGHAD---YVKN-----MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (330)
Q Consensus 127 ~~~i~iiDtPG~~~---~~~~-----~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~ 193 (330)
..++.|+||||..+ .... ........|.+++++|+........... ....+.....+ +++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~-~~~~Qi~~ad~-ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQT-EAQSQIAFADR-ILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccH-HHHHHHHHCCE-EEEecccC
Confidence 45779999999643 2211 2223446899999999965322110001 11122223336 58999996
No 376
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.43 E-value=1.2e-05 Score=66.53 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=59.0
Q ss_pred CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHH
Q 020176 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEM 205 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~ 205 (330)
....++|+|||+... ......+..+|.+++++.++..........++.+...+.+ +.+|+||+|.... ..+
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~-~~vV~N~~~~~~~------~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIP-VGVVINKYDLNDE------IAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCC-EEEEEeCCCCCcc------hHH
Confidence 467899999996432 2344566789999999999876666677777888888888 6789999997542 123
Q ss_pred HHHHHHHhcC
Q 020176 206 ELRELLSFYK 215 (330)
Q Consensus 206 ~~~~~~~~~~ 215 (330)
++.++++.++
T Consensus 162 ~~~~~~~~~~ 171 (179)
T cd03110 162 EIEDYCEEEG 171 (179)
T ss_pred HHHHHHHHcC
Confidence 4556677665
No 377
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.42 E-value=3.6e-06 Score=78.89 Aligned_cols=128 Identities=20% Similarity=0.239 Sum_probs=71.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh-h------hhhcCceEEeEEEEe-----------ee
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-E------EKKRGITIATAHVEY-----------ET 125 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~-~------e~~~g~t~~~~~~~~-----------~~ 125 (330)
+...|+++|.+|+||||++..|.......|........+..... . ....++......... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 35688999999999999999998777666654443322221110 0 111122221110000 01
Q ss_pred CCeeEEEEeCCCchhh----HHHHH--HhhhccCeEEEEEeCCCCCchhhHHHHHHHH-HcCCCeEEEEEeeccCcC
Q 020176 126 AKRHYAHVDCPGHADY----VKNMI--TGAAQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~----~~~~~--~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~-~~~~p~iivviNK~D~~~ 195 (330)
....++||||||.... +.++. ..+..+|.+++|+|++.+. ...+...... ..++- -+|+||+|...
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av~~a~~F~~~l~i~--gvIlTKlD~~a 246 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAKNQAKAFHEAVGIG--GIIITKLDGTA 246 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHHHHHHHHHhcCCCC--EEEEecccCCC
Confidence 2347999999995443 22222 2244689999999998752 2222222222 22333 36789999764
No 378
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.42 E-value=5.6e-07 Score=81.49 Aligned_cols=57 Identities=28% Similarity=0.429 Sum_probs=43.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (330)
+...+++++|.+|+|||||||+|. |+..+.++ ..+|+|.....+... ..+.++||||
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~------~k~~~~~s---------~~PG~Tk~~q~i~~~---~~i~LlDtPG 186 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLL------GKKVAKTS---------NRPGTTKGIQWIKLD---DGIYLLDTPG 186 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHh------cccceeeC---------CCCceecceEEEEcC---CCeEEecCCC
Confidence 445789999999999999999999 44333332 234888877766654 3489999999
No 379
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.42 E-value=4.6e-07 Score=73.31 Aligned_cols=58 Identities=28% Similarity=0.402 Sum_probs=39.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (330)
....+++++|.+|+|||||+|+|++.. ... ....+++|.......+. ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~------~~~---------~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKL------KLK---------VGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccc------ccc---------ccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 345789999999999999999999431 110 11223566665544442 46899999994
No 380
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=98.42 E-value=3.2e-06 Score=69.82 Aligned_cols=122 Identities=21% Similarity=0.212 Sum_probs=75.6
Q ss_pred EEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCC--hhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHHH
Q 020176 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA--PEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMIT 147 (330)
Q Consensus 70 v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~--~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~ 147 (330)
.-+..|+||||+.-.|.......|......- .|.. ......+..........+.-...++|+|||+.... ....
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllvD--~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~--~~~~ 80 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLID--ADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER--GFIT 80 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEEe--CCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH--HHHH
Confidence 4458899999999999888877776544331 2211 00000011000000000111127999999985443 2445
Q ss_pred hhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 148 GAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 148 ~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
.+..+|.+++++++...........++.+...+.+.+.+|+|++|...
T Consensus 81 ~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 81 AIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred HHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 577899999999998766666666777777777776778999998654
No 381
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.41 E-value=2e-06 Score=78.25 Aligned_cols=128 Identities=15% Similarity=0.136 Sum_probs=69.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCC-hhhh------hcCceEEeEEE--E-------ee-eCC
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA-PEEK------KRGITIATAHV--E-------YE-TAK 127 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~-~~e~------~~g~t~~~~~~--~-------~~-~~~ 127 (330)
...|+++|+.|+||||++..|.......|........+.... ..++ ..++.+....- . +. ..+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~ 285 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC 285 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence 457899999999999999999876666564443332221111 0011 11222111000 0 00 134
Q ss_pred eeEEEEeCCCch----hhHHHHHHhhh--ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 128 RHYAHVDCPGHA----DYVKNMITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 128 ~~i~iiDtPG~~----~~~~~~~~~~~--~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
..++||||||.. +.+.++..... ..|.+++|+++.... .+..+.+......++. - +++||+|...
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~-~d~~~i~~~f~~l~i~-g-lI~TKLDET~ 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS-ADVMTILPKLAEIPID-G-FIITKMDETT 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH-HHHHHHHHhcCcCCCC-E-EEEEcccCCC
Confidence 689999999963 34444433332 346777888774321 1222333333445555 3 4699999875
No 382
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.40 E-value=2.2e-06 Score=69.39 Aligned_cols=81 Identities=28% Similarity=0.213 Sum_probs=51.7
Q ss_pred CeEEEEEeCCCCCchhhHHHH-HHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeecccc
Q 020176 153 DGGILVVSAPDGPMPQTKEHI-LLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 153 d~~l~vvda~~~~~~~~~~~l-~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~ 231 (330)
|.+++|+|+.++......... ..+...++| +|+|+||+|+.+.++. .+.+..+ +... ..+++++||+++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p-~IiVlNK~Dl~~~~~~----~~~~~~~-~~~~----~~~ii~vSa~~~ 70 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKK-LILVLNKADLVPKEVL----RKWLAYL-RHSY----PTIPFKISATNG 70 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCC-EEEEEechhcCCHHHH----HHHHHHH-HhhC----CceEEEEeccCC
Confidence 789999999876555544444 355566788 8899999999864322 1112222 2221 156899999986
Q ss_pred ccCCccccchhhHHHHHHHHhh
Q 020176 232 LQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 232 ~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
.++.+|++.+..
T Consensus 71 ----------~gi~~L~~~i~~ 82 (155)
T cd01849 71 ----------QGIEKKESAFTK 82 (155)
T ss_pred ----------cChhhHHHHHHH
Confidence 346666666654
No 383
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.39 E-value=7.2e-06 Score=77.73 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=66.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcC--ccceeeccccCC-Chhhh------hcCceEEeEEEE------e-eeCCe
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEG--KAKAIAFDEIDK-APEEK------KRGITIATAHVE------Y-ETAKR 128 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g--~~~~~~~~~~~~-~~~e~------~~g~t~~~~~~~------~-~~~~~ 128 (330)
...|+|+|++|+||||++..|.......+ ........+... ...+. ..++.+...... + ...++
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 45889999999999999999987654432 222222111101 00111 112211111000 0 12357
Q ss_pred eEEEEeCCCchhhHHHH---HHhhh--ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 129 HYAHVDCPGHADYVKNM---ITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 129 ~i~iiDtPG~~~~~~~~---~~~~~--~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
+++||||||........ +..+. .....++|+++..+.. +..+.+..+...+. .-+|+||+|...
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~-Dl~eii~~f~~~~~--~gvILTKlDEt~ 498 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFS-DLDEVVRRFAHAKP--QGVVLTKLDETG 498 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChh-HHHHHHHHHHhhCC--eEEEEecCcCcc
Confidence 89999999954322111 11111 1235678888875422 22334444444443 346899999865
No 384
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.39 E-value=1.3e-06 Score=76.10 Aligned_cols=88 Identities=20% Similarity=0.285 Sum_probs=58.8
Q ss_pred HHhhhccCeEEEEEeCCCCC-c-hhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccE
Q 020176 146 ITGAAQMDGGILVVSAPDGP-M-PQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPI 223 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~-~-~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 223 (330)
...++++|.+++|+|+.+.. . ....+++..+...++| +++|+||+|+.+..+.. .+..+.++..+ .++
T Consensus 31 r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~-~vIV~NK~DL~~~~~~~----~~~~~~~~~~g-----~~v 100 (245)
T TIGR00157 31 RPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIE-PIIVLNKIDLLDDEDME----KEQLDIYRNIG-----YQV 100 (245)
T ss_pred CcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEECcccCCCHHHH----HHHHHHHHHCC-----CeE
Confidence 34678899999999998643 2 3344555566667888 77899999997643221 12222333333 679
Q ss_pred EEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 224 IRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 224 ~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
+++||+++ .++.++++.+..
T Consensus 101 ~~~SAktg----------~gi~eLf~~l~~ 120 (245)
T TIGR00157 101 LMTSSKNQ----------DGLKELIEALQN 120 (245)
T ss_pred EEEecCCc----------hhHHHHHhhhcC
Confidence 99999996 457777776653
No 385
>PRK12288 GTPase RsgA; Reviewed
Probab=98.39 E-value=5.5e-07 Score=82.15 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=38.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
.++++|.+|+|||||+|+|++. ....+..... ...+.+.+|.....+.+..+ ..++||||..+|
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~------~~~~t~~is~--~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPE------AEILVGDVSD--NSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccc------cceeeccccC--cCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 4789999999999999999842 2221111110 11122345555555555332 359999997664
No 386
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.38 E-value=7.9e-06 Score=57.32 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=49.7
Q ss_pred CCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 264 KPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 264 ~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
.|..+.|...|....+. ++.|+|..|+|++|..| .+ ..-.+|+|||.+++++++|.+|+
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~G---~~iG~I~sIe~~~k~v~~A~~G~ 61 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----DG---RKIGRIKSIEDNGKNVDEAKKGD 61 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----CS---SCEEEEEEEEETTEEESEEETT-
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----CC---EEEEEEEEeEECCcCccccCCCC
Confidence 47788898889888888 88889999999999999 22 23899999999999999999996
No 387
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.38 E-value=2.1e-06 Score=76.70 Aligned_cols=99 Identities=19% Similarity=0.192 Sum_probs=64.5
Q ss_pred CCCchh-hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHh
Q 020176 135 CPGHAD-YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (330)
Q Consensus 135 tPG~~~-~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~ 213 (330)
-|||.. -.++....+..+|++|+|+|+..+...........+. +.| +++|+||+|+.+... .. ...+.++.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp-~iiVlNK~DL~~~~~----~~-~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKP-RLLILNKSDLADPEV----TK-KWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCC-EEEEEEchhcCCHHH----HH-HHHHHHHH
Confidence 488765 3566677888999999999998766655544444332 677 779999999976421 11 22233333
Q ss_pred cCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 214 ~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
.+ .+++++||+++ .++..|++.+...++
T Consensus 79 ~~-----~~vi~vSa~~~----------~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 79 QG-----IKALAINAKKG----------QGVKKILKAAKKLLK 106 (287)
T ss_pred cC-----CeEEEEECCCc----------ccHHHHHHHHHHHHH
Confidence 22 57899999885 345666665555443
No 388
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.35 E-value=1.2e-06 Score=78.38 Aligned_cols=57 Identities=25% Similarity=0.337 Sum_probs=40.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (330)
...+++++|.+|+|||||+|+|++ .....+ ....|+|........ +..+.++||||.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~------~~~~~~---------~~~~g~T~~~~~~~~---~~~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAG------KKIAKT---------GNRPGVTKAQQWIKL---GKGLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhc------CCcccc---------CCCCCeEEEEEEEEe---CCcEEEEECCCc
Confidence 457899999999999999999984 222111 112467776654443 346899999994
No 389
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.34 E-value=4.1e-06 Score=60.54 Aligned_cols=64 Identities=25% Similarity=0.280 Sum_probs=50.6
Q ss_pred eEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc----eeecEEecCC
Q 020176 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 266 ~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
|+++|+++...++.|.++++||.+|+|++||+|++...+.. ....+|.+|...+ .++++|.||+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aG~ 68 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGK-IEKAKITKLFGFEGLKRVEVEEAEAGD 68 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCC-EEEEEEeeEeeeeCCCeeECcEECCCC
Confidence 57899999999999999999999999999999987654221 2235677764443 6899999986
No 390
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.34 E-value=3.3e-06 Score=60.86 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=51.7
Q ss_pred CCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc----eeecEEecCC
Q 020176 263 DKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 263 ~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
+.||.++|+++...++.|++.++||.+|+|+.||.|.+.. .. ..+|.+|..++ .++++|.||.
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~----~~~v~~l~~~~g~~~~~v~~~~aGd 67 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EE----KIKITELRVFNNGEVVTADTVTAGD 67 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-Cc----EEEeceeEEEeCCCeEECcEECCCC
Confidence 3689999999999999999999999999999999997654 21 35666666554 5889999884
No 391
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.33 E-value=1.1e-06 Score=78.09 Aligned_cols=57 Identities=19% Similarity=0.279 Sum_probs=39.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (330)
...+++++|.+|+|||||+|+|.+. ....+ ...+|+|.......+. ..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~------~~~~~---------~~~~g~T~~~~~~~~~---~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGK------KVAKV---------GNRPGVTKGQQWIKLS---DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC------Ccccc---------CCCCCeecceEEEEeC---CCEEEEECCCc
Confidence 4578999999999999999999832 11111 1123666665544442 36899999996
No 392
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.32 E-value=4.6e-06 Score=76.06 Aligned_cols=130 Identities=20% Similarity=0.167 Sum_probs=73.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHH-hcCc-cceeec-cccCCChhhh------hcCceEEeEEEE-------eeeCC
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLA-EEGK-AKAIAF-DEIDKAPEEK------KRGITIATAHVE-------YETAK 127 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~-~~g~-~~~~~~-~~~~~~~~e~------~~g~t~~~~~~~-------~~~~~ 127 (330)
+...|+++|++|+||||.+-.|..... ..+. ...... +..--...|+ .-++++....-. ....+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 367899999999999999999976555 2222 222211 1100011111 113333222110 02245
Q ss_pred eeEEEEeCCCchhh----HHHHHHhhhcc--CeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh
Q 020176 128 RHYAHVDCPGHADY----VKNMITGAAQM--DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 128 ~~i~iiDtPG~~~~----~~~~~~~~~~~--d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~ 196 (330)
++++||||.|...+ ..++...+..+ .-..+|++++.. .....+.+.....+++..+ ++||+|....
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~~~--I~TKlDET~s 353 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPIDGL--IFTKLDETTS 353 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCccee--EEEcccccCc
Confidence 68999999995443 34444443332 335677787542 2344556666777788855 5899998863
No 393
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.31 E-value=6.4e-07 Score=78.67 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=39.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH-HhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVL-AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~-~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
..+++|++|+|||||+|+|.... .+.|... ....+.+.+|.....+.+..++ .++||||..+|
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS---------~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEIS---------EKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhc---------ccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 67899999999999999998421 1111111 0111233456666666665333 79999997664
No 394
>PRK12289 GTPase RsgA; Reviewed
Probab=98.31 E-value=8.7e-07 Score=80.91 Aligned_cols=64 Identities=17% Similarity=0.073 Sum_probs=38.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
.++|+|++|+|||||+|+|++. ....+...... ..+.+.+|.....+.+... ..|+||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~------~~~~t~~vs~~--~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD------VELRVGKVSGK--LGRGRHTTRHVELFELPNG---GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc------cccccccccCC--CCCCCCcCceeEEEECCCC---cEEEeCCCcccc
Confidence 4799999999999999999842 11111111111 1122335555544444322 379999997553
No 395
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.30 E-value=6.7e-06 Score=72.27 Aligned_cols=126 Identities=22% Similarity=0.236 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh---------hhhhcCceEEeEEEE---------e-eeC
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP---------EEKKRGITIATAHVE---------Y-ETA 126 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~---------~e~~~g~t~~~~~~~---------~-~~~ 126 (330)
.+++++|++|+||||++..|.......+....... .|... .....++......-. + ...
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~--~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT--TDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEe--cCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 58999999999999999999876654443332221 11110 000112222111000 0 112
Q ss_pred CeeEEEEeCCCch----hhHHHHHHhhh--ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh
Q 020176 127 KRHYAHVDCPGHA----DYVKNMITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 127 ~~~i~iiDtPG~~----~~~~~~~~~~~--~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~ 196 (330)
+..+.||||||.. +.+.++...+. ..|-.++|+|++... .+..+.+......++. - +++||.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~~~~-~-~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHID-G-IVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCCCCCC-E-EEEEeecCCCC
Confidence 4689999999954 23444443332 467789999986432 2233444444556666 3 46899998763
No 396
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=98.30 E-value=1.2e-05 Score=63.70 Aligned_cols=121 Identities=18% Similarity=0.153 Sum_probs=73.6
Q ss_pred EEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHHHhh
Q 020176 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGA 149 (330)
Q Consensus 70 v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~ 149 (330)
.-+..|+||||+.-.|.......|....... .|.. +... ...++++|||+..+ ......+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd--~D~~------~~~~----------~yd~VIiD~p~~~~--~~~~~~l 64 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLD--ADLG------LANL----------DYDYIIIDTGAGIS--DNVLDFF 64 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEE--CCCC------CCCC----------CCCEEEEECCCCCC--HHHHHHH
Confidence 4578899999999988877666554333221 1110 1111 16789999998543 2234567
Q ss_pred hccCeEEEEEeCCCCCchhhHHHHHHHHHc-CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHh
Q 020176 150 AQMDGGILVVSAPDGPMPQTKEHILLARQV-GVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (330)
Q Consensus 150 ~~~d~~l~vvda~~~~~~~~~~~l~~~~~~-~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~ 213 (330)
..+|.++++++++......+...+..+... +.+++.+|+|+++...+ .++..+.+.+.+.+
T Consensus 65 ~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~~---~~~~~~~~~~~~~r 126 (139)
T cd02038 65 LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKE---GKKVFKRLSNVSNR 126 (139)
T ss_pred HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHHH---HHHHHHHHHHHHHH
Confidence 789999999999764444445555555432 34457789999974432 12333345555444
No 397
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.29 E-value=2.2e-06 Score=70.51 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=38.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (330)
..++++++|.+|+|||||+|+|++.. .... ....++|.......++ ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~------~~~~---------~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKK------VAKV---------GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC------ceee---------cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 34689999999999999999998421 1111 1122556655554443 56899999995
No 398
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.29 E-value=2.9e-05 Score=72.67 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=70.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHH-hcCccceeeccccCCCh-h------hhhcCceEEeEEE-------------Ee
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLA-EEGKAKAIAFDEIDKAP-E------EKKRGITIATAHV-------------EY 123 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~~~~~-~------e~~~g~t~~~~~~-------------~~ 123 (330)
...|.++|++|+||||++..|..... ..|........+..+.. . ....++....... ..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~ 178 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYA 178 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999987654 35554443322221111 0 1112222211100 00
Q ss_pred eeCCeeEEEEeCCCch----hhHHHHHHh--hhccCeEEEEEeCCCCCchhhHHHHHHHH-HcCCCeEEEEEeeccCcC
Q 020176 124 ETAKRHYAHVDCPGHA----DYVKNMITG--AAQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 124 ~~~~~~i~iiDtPG~~----~~~~~~~~~--~~~~d~~l~vvda~~~~~~~~~~~l~~~~-~~~~p~iivviNK~D~~~ 195 (330)
...+..++|+||||.. ....+.... ...+|.+++|+|+..+ ....+...... ..++- - +|+||+|...
T Consensus 179 ~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~-g-iIlTKlD~~~ 253 (428)
T TIGR00959 179 KENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGLT-G-VVLTKLDGDA 253 (428)
T ss_pred HhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCCC-E-EEEeCccCcc
Confidence 1234679999999942 333333221 2357889999999753 22333333322 34555 3 5699999654
No 399
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.28 E-value=3.9e-06 Score=77.54 Aligned_cols=129 Identities=16% Similarity=0.139 Sum_probs=70.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHH-HhcCccceeeccccCCC-hhh------hhcCceEEeEE------EEeeeCCeeE
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVL-AEEGKAKAIAFDEIDKA-PEE------KKRGITIATAH------VEYETAKRHY 130 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~-~~~g~~~~~~~~~~~~~-~~e------~~~g~t~~~~~------~~~~~~~~~i 130 (330)
...++++|++|+||||++..|.... ...|........+.... ..+ ...+....... ..+...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3468999999999999999998644 34454333222111000 000 11122221100 0001235688
Q ss_pred EEEeCCCchh----hHHHHHHhhh-----ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh
Q 020176 131 AHVDCPGHAD----YVKNMITGAA-----QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 131 ~iiDtPG~~~----~~~~~~~~~~-----~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~ 196 (330)
+||||||... ....+...+. ...-.++|+|++.+.. ...+.+......++.. +++||+|....
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~~~~~g--lIlTKLDEt~~ 374 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYESLNYRR--ILLTKLDEADF 374 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcCCCCCE--EEEEcccCCCC
Confidence 9999999542 2333332222 1345789999986532 2344445555667773 46899998753
No 400
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.27 E-value=6.3e-06 Score=74.24 Aligned_cols=151 Identities=26% Similarity=0.266 Sum_probs=77.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeecccc-----CC-C--------hhhhhcCceEEeEEEEe--------e
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEI-----DK-A--------PEEKKRGITIATAHVEY--------E 124 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~-----~~-~--------~~e~~~g~t~~~~~~~~--------~ 124 (330)
..+|.|.-|||||||+|.|+.... |+..++...+. |. . -.|-..|+-..+....+ .
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~ 80 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR 80 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh
Confidence 356899999999999999986543 43333221111 10 0 01111222111100000 1
Q ss_pred -eCCeeEEEEeCCCchhhHHHH--------HHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 125 -TAKRHYAHVDCPGHADYVKNM--------ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 125 -~~~~~i~iiDtPG~~~~~~~~--------~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
.......+|.|-|..+=...+ +......|.++-|||+...........-....+.....+ +++||+|+++
T Consensus 81 ~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~-ivlNK~Dlv~ 159 (323)
T COG0523 81 RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADV-IVLNKTDLVD 159 (323)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcE-EEEecccCCC
Confidence 233568999999955532211 112234688999999987433222101111122233435 6899999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCccEEEeec
Q 020176 196 DEELLELVEMELRELLSFYKFPGDEIPIIRGSA 228 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa 228 (330)
+++ .+.+ ++.++.++ ...+++..|.
T Consensus 160 ~~~-l~~l----~~~l~~ln---p~A~i~~~~~ 184 (323)
T COG0523 160 AEE-LEAL----EARLRKLN---PRARIIETSY 184 (323)
T ss_pred HHH-HHHH----HHHHHHhC---CCCeEEEccc
Confidence 764 3433 34444443 2255666554
No 401
>PRK12289 GTPase RsgA; Reviewed
Probab=98.27 E-value=6.2e-06 Score=75.37 Aligned_cols=85 Identities=24% Similarity=0.314 Sum_probs=57.5
Q ss_pred hhhccCeEEEEEeCCCCC-ch-hhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEE
Q 020176 148 GAAQMDGGILVVSAPDGP-MP-QTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIR 225 (330)
Q Consensus 148 ~~~~~d~~l~vvda~~~~-~~-~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~ 225 (330)
.++++|.+++|+|+.+.. .. ...+++..+...++| +++|+||+|++++++. +.+.+.++.++ +++++
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip-~ILVlNK~DLv~~~~~-----~~~~~~~~~~g-----~~v~~ 154 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLE-IVLCLNKADLVSPTEQ-----QQWQDRLQQWG-----YQPLF 154 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEchhcCChHHH-----HHHHHHHHhcC-----CeEEE
Confidence 367899999999997643 22 334555666667888 7789999999875332 12333344444 56899
Q ss_pred eeccccccCCccccchhhHHHHHHHHhh
Q 020176 226 GSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 226 ~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
+||+++ .++.+|++.+..
T Consensus 155 iSA~tg----------~GI~eL~~~L~~ 172 (352)
T PRK12289 155 ISVETG----------IGLEALLEQLRN 172 (352)
T ss_pred EEcCCC----------CCHHHHhhhhcc
Confidence 999986 346667666653
No 402
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.27 E-value=4.6e-06 Score=59.85 Aligned_cols=61 Identities=16% Similarity=0.071 Sum_probs=48.9
Q ss_pred eEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeC----ceeecEEecCC
Q 020176 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEVSW 330 (330)
Q Consensus 266 ~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~----~~~~~~a~~g~ 330 (330)
+..+|+++...++.|.+.++||.+|+|++||.|.+..... ..+|..|... ..++++|.||+
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~----~~~v~~l~~~~g~~~~~v~~~~aGd 65 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGK----KERISRLLQPFADQYQEIPSLSAGN 65 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCC----EEEeeEEEEEECCCceECCeeCCCC
Confidence 3568999999999999999999999999999998765432 3556665444 37899999985
No 403
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.27 E-value=7.4e-06 Score=75.65 Aligned_cols=129 Identities=16% Similarity=0.087 Sum_probs=71.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhc----CccceeeccccCCC-hhhh------hcCceEEeEEEE-------eeeC
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEE----GKAKAIAFDEIDKA-PEEK------KRGITIATAHVE-------YETA 126 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~----g~~~~~~~~~~~~~-~~e~------~~g~t~~~~~~~-------~~~~ 126 (330)
...|+++|++|+||||.+..|....... |........+..+. ..++ ..|+.+...... -...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 4578999999999999999998654422 33332222111111 0111 112222211100 0124
Q ss_pred CeeEEEEeCCCchh----hHHHHHHhhhc--cC-eEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh
Q 020176 127 KRHYAHVDCPGHAD----YVKNMITGAAQ--MD-GGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 127 ~~~i~iiDtPG~~~----~~~~~~~~~~~--~d-~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~ 196 (330)
+..++||||||... .+.++...+.. .+ -.++|+|++.+... ..+.+......+... +++||.|....
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~-~~~~~~~~~~~~~~~--~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD-VKEIFHQFSPFSYKT--VIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH-HHHHHHHhcCCCCCE--EEEEeccCCCc
Confidence 57899999999432 23333333332 23 58899999876322 234444444456663 46899998763
No 404
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.26 E-value=3.6e-05 Score=70.33 Aligned_cols=177 Identities=20% Similarity=0.311 Sum_probs=92.5
Q ss_pred cCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCcc-ceeeccccCCChhhhhcCceEEeEE----------EEe-eeCC
Q 020176 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKA-KAIAFDEIDKAPEEKKRGITIATAH----------VEY-ETAK 127 (330)
Q Consensus 60 ~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~-~~~~~~~~~~~~~e~~~g~t~~~~~----------~~~-~~~~ 127 (330)
.+....+-|+|+|++-+|||||+.++.....-..-. ...-....|..+. ...|.|+-+.. +.+ +.-.
T Consensus 12 ~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQ-S~aGktImTTEPKFiP~eAv~I~l~~~~~ 90 (492)
T PF09547_consen 12 ERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQ-SGAGKTIMTTEPKFIPNEAVEITLDDGIK 90 (492)
T ss_pred HhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCc-CCCCCceeccCCcccCCcceEEEecCCce
Confidence 345667889999999999999999997543211100 0000000111111 11233433221 112 1234
Q ss_pred eeEEEEeCCCc--------hh-----------------hHHHHHHhhhcc----CeEEEEEeCCCCC--------chhhH
Q 020176 128 RHYAHVDCPGH--------AD-----------------YVKNMITGAAQM----DGGILVVSAPDGP--------MPQTK 170 (330)
Q Consensus 128 ~~i~iiDtPG~--------~~-----------------~~~~~~~~~~~~----d~~l~vvda~~~~--------~~~~~ 170 (330)
.++.++||-|+ .+ |.....-+.+.. ..+=+||-....+ .....
T Consensus 91 ~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEe 170 (492)
T PF09547_consen 91 VKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEE 170 (492)
T ss_pred EEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHH
Confidence 67889999881 11 344443333321 1233344332211 13345
Q ss_pred HHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHH
Q 020176 171 EHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDA 250 (330)
Q Consensus 171 ~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~ 250 (330)
+.+..++..|+| |++++|-.+=.+++ ..+...++-++|+ +|++|+++..- ..+.+..+|+.
T Consensus 171 rvI~ELk~igKP-FvillNs~~P~s~e-----t~~L~~eL~ekY~-----vpVlpvnc~~l--------~~~DI~~Il~~ 231 (492)
T PF09547_consen 171 RVIEELKEIGKP-FVILLNSTKPYSEE-----TQELAEELEEKYD-----VPVLPVNCEQL--------REEDITRILEE 231 (492)
T ss_pred HHHHHHHHhCCC-EEEEEeCCCCCCHH-----HHHHHHHHHHHhC-----CcEEEeehHHc--------CHHHHHHHHHH
Confidence 667788899999 99999987754422 2223344455655 78998886542 12345566655
Q ss_pred HhhhCC
Q 020176 251 VDEYIP 256 (330)
Q Consensus 251 l~~~~~ 256 (330)
+.-.+|
T Consensus 232 vLyEFP 237 (492)
T PF09547_consen 232 VLYEFP 237 (492)
T ss_pred HHhcCC
Confidence 554444
No 405
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.25 E-value=1.5e-06 Score=75.73 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=38.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH-hcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLA-EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (330)
..++++|++|+|||||+|+|.+... ..|.... ...+.+.+|.....+.+. ...++||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~---------~~~~G~hTT~~~~l~~l~----~~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISS---------KLGLGKHTTTHVELFHFH----GGLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceec---------cCCCCCCcCCceEEEEcC----CcEEEeCCCccc
Confidence 3689999999999999999985421 1111110 011223456555555552 238999999654
No 406
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.25 E-value=7.3e-06 Score=75.54 Aligned_cols=101 Identities=19% Similarity=0.136 Sum_probs=63.4
Q ss_pred chhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
.++|..........++++++|+|+.+.......+....+ .+.| +++|+||+|+.+.....+.+.+.+++.++..++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~p-iilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~ 126 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNP-VLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK 126 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCC-EEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 456777666666788999999999764433332222222 2556 8899999999864322233444555566666642
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
...++++||+++. ++.++++.+.+
T Consensus 127 --~~~i~~vSAk~g~----------gv~eL~~~l~~ 150 (360)
T TIGR03597 127 --PVDIILVSAKKGN----------GIDELLDKIKK 150 (360)
T ss_pred --cCcEEEecCCCCC----------CHHHHHHHHHH
Confidence 1248999999863 35556555544
No 407
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.24 E-value=6.3e-06 Score=59.12 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=48.9
Q ss_pred EEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc----eeecEEecCC
Q 020176 267 LMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 267 ~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
..+|+++...++.|++.++||.+|+|++||.|.+..... ..+|.+|...+ .++++|.||+
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~----~~~v~~l~~~~g~~~~~v~~~~aGd 65 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGK----KERVGRLLRMHGKKQEEVEEAGAGD 65 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCc----EEEeeEEEEEcCCCceECCEeCCCC
Confidence 567899999999999999999999999999998775433 45666664443 6889999985
No 408
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.23 E-value=5e-05 Score=71.84 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=43.7
Q ss_pred CCCeEEEEEeeccCcC--------hHHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHH
Q 020176 180 GVPSLVCFLNKVDLVE--------DEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAV 251 (330)
Q Consensus 180 ~~p~iivviNK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l 251 (330)
|+| ++||++|.|... .++.++.+...++.++-.||. -+|.+|.+.. .++..|..+|
T Consensus 196 Gip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-----sL~yts~~~~----------~n~~~L~~yi 259 (472)
T PF05783_consen 196 GIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-----SLIYTSVKEE----------KNLDLLYKYI 259 (472)
T ss_pred Ccc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-----eEEEeecccc----------ccHHHHHHHH
Confidence 578 889999999764 245567778888999988884 4888888775 2366666666
Q ss_pred hhhC
Q 020176 252 DEYI 255 (330)
Q Consensus 252 ~~~~ 255 (330)
...+
T Consensus 260 ~h~l 263 (472)
T PF05783_consen 260 LHRL 263 (472)
T ss_pred HHHh
Confidence 6544
No 409
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.23 E-value=8.4e-06 Score=74.60 Aligned_cols=128 Identities=20% Similarity=0.240 Sum_probs=75.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChh-hh------hcCceEEeEE-------------EE
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPE-EK------KRGITIATAH-------------VE 122 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~-e~------~~g~t~~~~~-------------~~ 122 (330)
+++-.|.++|--|+||||.+..|.....+.|+....++.+..+... ++ .-++.+.... ..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 4556899999999999999999998877777666555443322211 11 1122111110 00
Q ss_pred eeeCCeeEEEEeCCC----chhhHHHHHH--hhhccCeEEEEEeCCCCCchhhHHHHHH--HHHcCCCeEEEEEeeccCc
Q 020176 123 YETAKRHYAHVDCPG----HADYVKNMIT--GAAQMDGGILVVSAPDGPMPQTKEHILL--ARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 123 ~~~~~~~i~iiDtPG----~~~~~~~~~~--~~~~~d~~l~vvda~~~~~~~~~~~l~~--~~~~~~p~iivviNK~D~~ 194 (330)
+......+.|+||+| .++++.++.. ....+|-+++|+|+.-| |....... -...++- - +++||+|-.
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~it-G-vIlTKlDGd 252 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGIT-G-VILTKLDGD 252 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHHHHhhhcCCc-e-EEEEcccCC
Confidence 122346899999999 2334544432 33468999999999875 33222221 1233455 3 568999864
Q ss_pred C
Q 020176 195 E 195 (330)
Q Consensus 195 ~ 195 (330)
.
T Consensus 253 a 253 (451)
T COG0541 253 A 253 (451)
T ss_pred C
Confidence 3
No 410
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.23 E-value=2.8e-06 Score=77.41 Aligned_cols=90 Identities=21% Similarity=0.223 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH-hcCccceeeccccCCChhhhhcCceEEeE---------EEEeeeCCeeEEEEeC
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLA-EEGKAKAIAFDEIDKAPEEKKRGITIATA---------HVEYETAKRHYAHVDC 135 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~~~~~~e~~~g~t~~~~---------~~~~~~~~~~i~iiDt 135 (330)
++++|+|.+|+|||||.|+|++... +.+...+ +..+...|+-.-.. .-.-......+.++|.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypf--------tTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~Di 74 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPF--------TTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDI 74 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCC--------CCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEec
Confidence 5899999999999999999995433 2221111 10111111110000 0000112346899999
Q ss_pred CCchh-------hHHHHHHhhhccCeEEEEEeCCC
Q 020176 136 PGHAD-------YVKNMITGAAQMDGGILVVSAPD 163 (330)
Q Consensus 136 PG~~~-------~~~~~~~~~~~~d~~l~vvda~~ 163 (330)
||... .....+..++.+|+++.|+++.+
T Consensus 75 aGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 75 AGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 99533 44466777889999999999864
No 411
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.23 E-value=2.4e-05 Score=77.58 Aligned_cols=128 Identities=18% Similarity=0.210 Sum_probs=66.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH-hcCc-cceeeccccCCC-hhh------hhcCceEEeEEE--E-----eeeCCee
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLA-EEGK-AKAIAFDEIDKA-PEE------KKRGITIATAHV--E-----YETAKRH 129 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~-~~g~-~~~~~~~~~~~~-~~e------~~~g~t~~~~~~--~-----~~~~~~~ 129 (330)
..|+++|++|+||||++..|..... ..|. .......+.... ..+ ...++......- . -...++.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 4789999999999999999987653 4442 222222111110 001 111222211000 0 0123568
Q ss_pred EEEEeCCCc----hhhHHHHHHh--hhccCeEEEEEeCCCCCchhhHHHHHHHHHc---CCCeEEEEEeeccCcCh
Q 020176 130 YAHVDCPGH----ADYVKNMITG--AAQMDGGILVVSAPDGPMPQTKEHILLARQV---GVPSLVCFLNKVDLVED 196 (330)
Q Consensus 130 i~iiDtPG~----~~~~~~~~~~--~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~---~~p~iivviNK~D~~~~ 196 (330)
++||||||. .+...+.... ....+-.++|+|++.+.. ...+.+...... ++. - +|+||+|....
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~-~l~~i~~~f~~~~~~~i~-g-lIlTKLDEt~~ 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD-TLNEVVHAYRHGAGEDVD-G-CIITKLDEATH 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH-HHHHHHHHHhhcccCCCC-E-EEEeccCCCCC
Confidence 999999992 2222222221 224567899999975311 112233333322 445 3 46899998763
No 412
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.23 E-value=7e-06 Score=57.43 Aligned_cols=49 Identities=33% Similarity=0.461 Sum_probs=40.9
Q ss_pred ceEEEEEEEeeeeecCCEEEEecCCCC--CCceEEEEEEEeCceeecEEecC
Q 020176 280 GTVATGRVEQGTIKVGEEVEVLGLTQG--PSLKTTVTGVEMFKKILDRGEVS 329 (330)
Q Consensus 280 G~v~~g~v~~G~l~~g~~v~~~~~~~~--~~~~~~v~si~~~~~~~~~a~~g 329 (330)
|++++|||.+|+|++||+|++.| ... .+...+|++|+.++....++.+|
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~-~~~~~~~~~~~I~~i~~~~~~~~~~~~~ 51 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLP-NGTGKKGQVVKIKSIFMFNGDVQEAVAG 51 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEES-TTTTEECEEEEEEEEEETTEEESEEETT
T ss_pred CEEEEEEEEEeEEcCCCEEEECc-cCCcceeeeeecccccccccCccEeCCc
Confidence 78999999999999999999977 322 13459999999999888777665
No 413
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=98.21 E-value=1.6e-05 Score=59.93 Aligned_cols=97 Identities=24% Similarity=0.229 Sum_probs=66.6
Q ss_pred EcCCCCCHHHHHHHHHHHHHhc-CccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHHHhh
Q 020176 71 IGHVDHGKTTLTAAITKVLAEE-GKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGA 149 (330)
Q Consensus 71 ~G~~~~GKSTLi~~L~~~~~~~-g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~ 149 (330)
-+..|+||||+.-.|....... |........++ . ....++++|||+..... ....+
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~--~-------------------~~~D~IIiDtpp~~~~~--~~~~l 62 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDL--Q-------------------FGDDYVVVDLGRSLDEV--SLAAL 62 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCC--C-------------------CCCCEEEEeCCCCcCHH--HHHHH
Confidence 4567899999999998777665 55443321111 1 01178999999865432 34566
Q ss_pred hccCeEEEEEeCCCCCchhhHHHHHHHHHcCCC---eEEEEEee
Q 020176 150 AQMDGGILVVSAPDGPMPQTKEHILLARQVGVP---SLVCFLNK 190 (330)
Q Consensus 150 ~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p---~iivviNK 190 (330)
..+|.++++++.+........+.+..+...+.+ ++.+|+|+
T Consensus 63 ~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 63 DQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 789999999999876666667777777776654 57788886
No 414
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.20 E-value=3.1e-05 Score=72.80 Aligned_cols=125 Identities=19% Similarity=0.134 Sum_probs=67.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH--hcCccceeeccccCCCh---hh------hhcCceEEeEEEE--e-----eeCC
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLA--EEGKAKAIAFDEIDKAP---EE------KKRGITIATAHVE--Y-----ETAK 127 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~--~~g~~~~~~~~~~~~~~---~e------~~~g~t~~~~~~~--~-----~~~~ 127 (330)
..++++|++|+||||++..|..... ..|....... .|... .+ ...++........ + ...+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~--~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~ 299 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT--LDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRD 299 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE--CCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCC
Confidence 4789999999999999999987655 3333333221 12110 00 1122222111000 0 1235
Q ss_pred eeEEEEeCCCchhh----HHHHHHhhh---ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 128 RHYAHVDCPGHADY----VKNMITGAA---QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 128 ~~i~iiDtPG~~~~----~~~~~~~~~---~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
..++||||||.... ...+...+. ...-+.+|++++.+. ....+.+......++. - +++||+|...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~~-~-vI~TKlDet~ 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPLD-G-LIFTKLDETS 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCCC-E-EEEecccccc
Confidence 68999999995332 222323222 234668889986532 2233344444445554 2 5799999865
No 415
>PRK00098 GTPase RsgA; Reviewed
Probab=98.18 E-value=1.1e-05 Score=72.36 Aligned_cols=84 Identities=26% Similarity=0.348 Sum_probs=55.6
Q ss_pred hhccCeEEEEEeCCCCCc--hhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEe
Q 020176 149 AAQMDGGILVVSAPDGPM--PQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRG 226 (330)
Q Consensus 149 ~~~~d~~l~vvda~~~~~--~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~ 226 (330)
++.+|.+++|+|+.+... ....+++..+...++| +++|+||+|+....+. .. +..+.++..+ ++++++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip-~iIVlNK~DL~~~~~~---~~-~~~~~~~~~g-----~~v~~v 147 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIK-PIIVLNKIDLLDDLEE---AR-ELLALYRAIG-----YDVLEL 147 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEhHHcCCCHHH---HH-HHHHHHHHCC-----CeEEEE
Confidence 578999999999976432 2224455566677888 7789999999743321 11 2333444444 579999
Q ss_pred eccccccCCccccchhhHHHHHHHHh
Q 020176 227 SATSALQGKNEEIGKKAILKLMDAVD 252 (330)
Q Consensus 227 Sa~~~~~g~~~~~~~~~i~~ll~~l~ 252 (330)
||+++ .++.+|++.+.
T Consensus 148 SA~~g----------~gi~~L~~~l~ 163 (298)
T PRK00098 148 SAKEG----------EGLDELKPLLA 163 (298)
T ss_pred eCCCC----------ccHHHHHhhcc
Confidence 99986 34666666653
No 416
>PRK13796 GTPase YqeH; Provisional
Probab=98.17 E-value=3e-06 Score=78.23 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=42.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
..++.++|.+|+|||||+|+|++... +.... ......+|+|.....+.++. ...++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~--~~~~~--------~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEIT--GEKDV--------ITTSRFPGTTLDKIEIPLDD---GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhcc--Cccce--------EEecCCCCccceeEEEEcCC---CcEEEECCCcc
Confidence 35899999999999999999985421 11111 11234468888776665532 35899999964
No 417
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.17 E-value=1e-05 Score=58.40 Aligned_cols=61 Identities=25% Similarity=0.290 Sum_probs=48.2
Q ss_pred eEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc---eeecEEecCC
Q 020176 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK---KILDRGEVSW 330 (330)
Q Consensus 266 ~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~---~~~~~a~~g~ 330 (330)
|.++|+++...++.|+++++||.+|+|++||.|.+...+. +.+|..|..++ .++++|.||+
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~----~~~i~~l~~~~~~~~~~~~~~aGd 64 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGK----EYEVEEVGIFRPEMTPTDELSAGQ 64 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCC----eEEEEEEEEECCCccCCceECCCC
Confidence 4688999999999999999999999999999998765433 34454544333 5889998885
No 418
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.14 E-value=3.6e-05 Score=69.58 Aligned_cols=67 Identities=24% Similarity=0.266 Sum_probs=38.5
Q ss_pred eeEEEEeCCCchhhHHHHHH--------hhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh
Q 020176 128 RHYAHVDCPGHADYVKNMIT--------GAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~~~--------~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~ 196 (330)
....+|.|.|..+-...... .....|.++.|+|+........... ....+.....+ |++||+|+.++
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~-~~~~Qi~~AD~-IvlnK~Dl~~~ 165 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFT-IAQSQVGYADR-ILLTKTDVAGE 165 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccH-HHHHHHHhCCE-EEEeccccCCH
Confidence 46789999997653222211 1124588999999976322111111 11223333436 68999999974
No 419
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.13 E-value=1.7e-05 Score=56.59 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=46.6
Q ss_pred EEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc----eeecEEecCC
Q 020176 267 LMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 267 ~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
..+|+++...+. |.+.++||.+|+|++||.|++...+. ..+|..|...+ .+++++.||+
T Consensus 2 ~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~----~~~v~~i~~~~g~~~~~~~~~~aGd 64 (81)
T cd04091 2 VGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGK----KVRVPRLVRMHSNEMEEVEEAGAGD 64 (81)
T ss_pred eEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCC----EEEEeEEEEEeCCCceEccEECCCC
Confidence 467888888777 99999999999999999998875443 45666654443 6889999985
No 420
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.13 E-value=4.1e-06 Score=77.18 Aligned_cols=116 Identities=9% Similarity=0.096 Sum_probs=62.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH--
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK-- 143 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~-- 143 (330)
.+++++|.+|+|||||+|+|++....... .. .....+|+|.....+.+ +..+.++||||.....+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~-~~---------~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~~~~~ 221 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKD-VI---------TTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINSHQMA 221 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcc-ee---------eecCCCCeEeeEEEEEe---CCCCEEEECCCCCChhHhh
Confidence 58999999999999999999964211100 11 11233578877665544 23468999999543211
Q ss_pred HH-----HHh---hhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 144 NM-----ITG---AAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 144 ~~-----~~~---~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
.. ... -.......+.++..+.+.......+..+...+.. +.++.+|-+...
T Consensus 222 ~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~-~~~~~~~~~~~h 280 (360)
T TIGR03597 222 HYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTS-FTFYVSNELNIH 280 (360)
T ss_pred hhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceE-EEEEccCCceeE
Confidence 10 011 1134556677776553322221112222222223 556666666554
No 421
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.11 E-value=1.3e-05 Score=74.90 Aligned_cols=77 Identities=25% Similarity=0.402 Sum_probs=55.1
Q ss_pred eEEEEeee-CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCC--------CchhhHHHHHHHHH------c-CC
Q 020176 118 TAHVEYET-AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG--------PMPQTKEHILLARQ------V-GV 181 (330)
Q Consensus 118 ~~~~~~~~-~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~--------~~~~~~~~l~~~~~------~-~~ 181 (330)
.....+.. .+..+.++|+.|+..-.+.|...+...+++|||++.++- -.....+.+.+... + +.
T Consensus 225 i~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~ 304 (389)
T PF00503_consen 225 ITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNT 304 (389)
T ss_dssp EEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTS
T ss_pred eeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccC
Confidence 34445566 788999999999998889999999999999999997641 11223344444332 2 45
Q ss_pred CeEEEEEeeccCcC
Q 020176 182 PSLVCFLNKVDLVE 195 (330)
Q Consensus 182 p~iivviNK~D~~~ 195 (330)
| +|+++||+|+..
T Consensus 305 ~-iil~lnK~D~f~ 317 (389)
T PF00503_consen 305 P-IILFLNKIDLFE 317 (389)
T ss_dssp E-EEEEEE-HHHHH
T ss_pred c-eEEeeecHHHHH
Confidence 5 999999999764
No 422
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=2e-05 Score=70.81 Aligned_cols=124 Identities=21% Similarity=0.186 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh----h---hhhcCceEEeEEE-------------Eeee
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP----E---EKKRGITIATAHV-------------EYET 125 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~----~---e~~~g~t~~~~~~-------------~~~~ 125 (330)
-.|.++|-.|+||||.+..|.......|......+.+..+.. . ..+.++.+..... .+..
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKk 181 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKK 181 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHh
Confidence 467899999999999999998888777876665544332211 1 1111232222111 1234
Q ss_pred CCeeEEEEeCCCchh----hHHHHHHhh--hccCeEEEEEeCCCCCchhhHHHHHHHH--HcCCCeEEEEEeeccCc
Q 020176 126 AKRHYAHVDCPGHAD----YVKNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLAR--QVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~----~~~~~~~~~--~~~d~~l~vvda~~~~~~~~~~~l~~~~--~~~~p~iivviNK~D~~ 194 (330)
++..++|+||.|-.. +..++.... -.+|-+|+|+|++-| |..+...... ..++- -+++||+|-.
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---Qaae~Qa~aFk~~vdvg--~vIlTKlDGh 253 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---QAAEAQARAFKETVDVG--AVILTKLDGH 253 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc---HhHHHHHHHHHHhhccc--eEEEEecccC
Confidence 678899999999222 344443332 258999999999865 2222222221 22344 2467888854
No 423
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.10 E-value=5.4e-06 Score=74.01 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=39.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHh-cCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAE-EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
..++++|++|+|||||+|.|++.... .|.... ...+.+++|.....+.+.. ...++||||..+|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~---------~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISE---------KLGRGRHTTTHRELFPLPG---GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceec---------cCCCCCcccceEEEEEcCC---CCEEEECCCCCcc
Confidence 57899999999999999999854321 121100 0112233555554444432 2379999998664
No 424
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.08 E-value=9.1e-05 Score=70.18 Aligned_cols=168 Identities=19% Similarity=0.180 Sum_probs=84.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH-hcCc-cceeeccccCCC-hh------hhhcCceEEeEEEE-------eeeCCee
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLA-EEGK-AKAIAFDEIDKA-PE------EKKRGITIATAHVE-------YETAKRH 129 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~-~~g~-~~~~~~~~~~~~-~~------e~~~g~t~~~~~~~-------~~~~~~~ 129 (330)
..++++|++|+||||++..|..... ..|. .......+.... -. -...|+........ ....+..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 4789999999999999999997653 3343 222221111100 00 11223322211000 1223567
Q ss_pred EEEEeCCCchhhH---HHHHHhhhc---cCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHH
Q 020176 130 YAHVDCPGHADYV---KNMITGAAQ---MDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELV 203 (330)
Q Consensus 130 i~iiDtPG~~~~~---~~~~~~~~~---~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~ 203 (330)
+.+|||+|..... ......+.. ..-.++|+|+..+. ....+.+......++. - +++||+|....-.
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~-~~l~~i~~~f~~~~~~-g-~IlTKlDet~~~G----- 408 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG-DTLNEVVQAYRGPGLA-G-CILTKLDEAASLG----- 408 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-HHHHHHHHHhccCCCC-E-EEEeCCCCcccch-----
Confidence 8999999933322 111122221 23378999997543 2223334444445555 3 4689999775321
Q ss_pred HHHHHHHHHhcCCCCCCccEEEeeccccccCCcc-c-cchhhHHHHHHHHhh
Q 020176 204 EMELRELLSFYKFPGDEIPIIRGSATSALQGKNE-E-IGKKAILKLMDAVDE 253 (330)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~-~-~~~~~i~~ll~~l~~ 253 (330)
.+-.+....+ .|+..++. |+++ + .....-..|++.+..
T Consensus 409 --~~l~i~~~~~-----lPI~yvt~-----GQ~VPeDL~~a~~~~lv~~ll~ 448 (484)
T PRK06995 409 --GALDVVIRYK-----LPLHYVSN-----GQRVPEDLHLANKKFLLHRAFC 448 (484)
T ss_pred --HHHHHHHHHC-----CCeEEEec-----CCCChhhhccCCHHHHHHHHhc
Confidence 2223333433 56766652 4443 2 122334556666654
No 425
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.07 E-value=9.3e-05 Score=67.64 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
-..|.|.-|+|||||+|.|+..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4678999999999999999864
No 426
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.06 E-value=8.8e-06 Score=71.88 Aligned_cols=88 Identities=22% Similarity=0.241 Sum_probs=57.1
Q ss_pred cCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee---------------
Q 020176 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE--------------- 124 (330)
Q Consensus 60 ~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~--------------- 124 (330)
.+....++++|+|-+|+|||||.|+|++.....+...+ .|++.......
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF----------------~TIdPn~a~V~v~d~Rfd~l~~~Y~~ 78 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPF----------------CTIDPNEARVEVPDSRFDLLCPIYGP 78 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCc----------------ceeccccceeecCchHHHHHHHhcCC
Confidence 44456789999999999999999999965333222222 22222111110
Q ss_pred --eCCeeEEEEeCCCchh-------hHHHHHHhhhccCeEEEEEeCCC
Q 020176 125 --TAKRHYAHVDCPGHAD-------YVKNMITGAAQMDGGILVVSAPD 163 (330)
Q Consensus 125 --~~~~~i~iiDtPG~~~-------~~~~~~~~~~~~d~~l~vvda~~ 163 (330)
.-...++++|++|... +....++.++.+|+++-|+++.+
T Consensus 79 ~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 79 KSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 0123589999999433 34555667788999999998864
No 427
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=2.5e-05 Score=72.76 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=68.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHH-hcC-ccceeeccccCC-Ch------hhhhcCceEEeEEEE-------eeeCCe
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLA-EEG-KAKAIAFDEIDK-AP------EEKKRGITIATAHVE-------YETAKR 128 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~-~~g-~~~~~~~~~~~~-~~------~e~~~g~t~~~~~~~-------~~~~~~ 128 (330)
...|+++|++|+||||++..|..... ..+ ............ .. .....|+........ ....+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 45899999999999999999986432 112 111111111100 00 011123332211100 123456
Q ss_pred eEEEEeCCCchhh----HHHHHHh--hhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh
Q 020176 129 HYAHVDCPGHADY----VKNMITG--AAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 129 ~i~iiDtPG~~~~----~~~~~~~--~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~ 196 (330)
.+.+|||+|.... ..+.... ....+-.++|+|++.+.. ...+.+......++..+ ++||.|....
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~-~~~~~~~~f~~~~~~~~--I~TKlDEt~~ 341 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD-TLDEVISAYQGHGIHGC--IITKVDEAAS 341 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHH-HHHHHHHHhcCCCCCEE--EEEeeeCCCC
Confidence 8899999995442 2222211 112446789999975322 22334444455666634 6899998763
No 428
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.04 E-value=3.2e-05 Score=69.12 Aligned_cols=84 Identities=25% Similarity=0.228 Sum_probs=55.3
Q ss_pred hhhccCeEEEEEeCCCCC-c-hhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEE
Q 020176 148 GAAQMDGGILVVSAPDGP-M-PQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIR 225 (330)
Q Consensus 148 ~~~~~d~~l~vvda~~~~-~-~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~ 225 (330)
.+.++|.+++|+|+.++. . ....+++..+...++| +++|+||+|+.++.+. . .........+ .++++
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~~~~----~-~~~~~~~~~g-----~~v~~ 143 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIE-PVIVLTKADLLDDEEE----E-LELVEALALG-----YPVLA 143 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCC-EEEEEEHHHCCChHHH----H-HHHHHHHhCC-----CeEEE
Confidence 366899999999998764 3 2334456666777888 7789999999864221 1 1122223333 68999
Q ss_pred eeccccccCCccccchhhHHHHHHHHh
Q 020176 226 GSATSALQGKNEEIGKKAILKLMDAVD 252 (330)
Q Consensus 226 ~Sa~~~~~g~~~~~~~~~i~~ll~~l~ 252 (330)
+||+++ .++++|.+.+.
T Consensus 144 vSA~~g----------~gi~~L~~~L~ 160 (287)
T cd01854 144 VSAKTG----------EGLDELREYLK 160 (287)
T ss_pred EECCCC----------ccHHHHHhhhc
Confidence 999986 34666665554
No 429
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.04 E-value=1.2e-05 Score=65.04 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=36.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (330)
...+++++|.+|+|||||+|+|.+. ..... ....|.|....... .+..+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~------~~~~~---------~~~~~~t~~~~~~~---~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGR------HSAST---------SPSPGYTKGEQLVK---ITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC------Ccccc---------CCCCCeeeeeEEEE---cCCCEEEEECcCC
Confidence 4568899999999999999999832 11110 11124444332222 2346899999993
No 430
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.03 E-value=3.2e-05 Score=55.66 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=44.4
Q ss_pred EEEEEEe---eCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc----eeecEEecCC
Q 020176 269 PIEDVFS---IQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 269 ~i~~~~~---~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
+|+++.. .|+.|++.++||.+|+|++||.|++...+. ..+|..|...+ .++++|.||.
T Consensus 2 ~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~----~~kv~~l~~~~g~~~~~v~~a~aGd 66 (85)
T cd03689 2 FVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGK----EVRLSNPQQFFAQDRETVDEAYPGD 66 (85)
T ss_pred EEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCC----EEEeeEeEEEecCCeeEcCEECCCC
Confidence 4666666 899999999999999999999998765332 34555554444 6889999984
No 431
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.02 E-value=6.6e-05 Score=70.24 Aligned_cols=132 Identities=19% Similarity=0.237 Sum_probs=79.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHH-HHhcCccceeec---------------------cccCCCh-------------
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKV-LAEEGKAKAIAF---------------------DEIDKAP------------- 107 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~-~~~~g~~~~~~~---------------------~~~~~~~------------- 107 (330)
..-++|+++|...+|||+.+..+.+. .+..|.+.-.+- ...|-+.
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 34468999999999999999998753 333343211000 0011111
Q ss_pred ---hhhhcCceEEeEEEEeeeCC---eeEEEEeCCCchh-------------hHHHHHHhhhccCeEEEEEeC-CCC-Cc
Q 020176 108 ---EEKKRGITIATAHVEYETAK---RHYAHVDCPGHAD-------------YVKNMITGAAQMDGGILVVSA-PDG-PM 166 (330)
Q Consensus 108 ---~e~~~g~t~~~~~~~~~~~~---~~i~iiDtPG~~~-------------~~~~~~~~~~~~d~~l~vvda-~~~-~~ 166 (330)
.....|.|+....+.+...+ .+++++|.||... ..+....++.+++++|+||-- +-. ..
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAER 465 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAER 465 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhh
Confidence 11123677766555554432 6789999999322 344556677789999999742 111 11
Q ss_pred hhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 167 PQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 167 ~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
.........+...|.. .|+|++|+|++.
T Consensus 466 SnVTDLVsq~DP~GrR-TIfVLTKVDlAE 493 (980)
T KOG0447|consen 466 SIVTDLVSQMDPHGRR-TIFVLTKVDLAE 493 (980)
T ss_pred hhHHHHHHhcCCCCCe-eEEEEeecchhh
Confidence 1223344455566777 668999999976
No 432
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.02 E-value=1.6e-05 Score=69.53 Aligned_cols=66 Identities=21% Similarity=0.237 Sum_probs=45.4
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (330)
.+.+.++.|+|-||+|||||+|++........ ..+.+ -.++|+|+......--.....+.++||||
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~-k~a~v---------G~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKK-KAARV---------GAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhc-cceec---------cCCCCceeeehhheEeccCCceEEecCCC
Confidence 46778999999999999999999976544433 22222 12458887765422223345689999999
No 433
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.02 E-value=8e-05 Score=54.45 Aligned_cols=74 Identities=23% Similarity=0.271 Sum_probs=51.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH-HH
Q 020176 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN-MI 146 (330)
Q Consensus 68 I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~-~~ 146 (330)
+++.|..|+||||+...|.....+.|...... + .+.++|+|+....... ..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~------------------------~----d~iivD~~~~~~~~~~~~~ 53 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLI------------------------D----DYVLIDTPPGLGLLVLLCL 53 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE------------------------C----CEEEEeCCCCccchhhhhh
Confidence 67889999999999999987766544322211 1 7899999996543321 23
Q ss_pred HhhhccCeEEEEEeCCCCCchhh
Q 020176 147 TGAAQMDGGILVVSAPDGPMPQT 169 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~~~~ 169 (330)
.....+|.++++++.........
T Consensus 54 ~~~~~~~~vi~v~~~~~~~~~~~ 76 (99)
T cd01983 54 LALLAADLVIIVTTPEALAVLGA 76 (99)
T ss_pred hhhhhCCEEEEecCCchhhHHHH
Confidence 45567899999999876444333
No 434
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.00011 Score=65.47 Aligned_cols=129 Identities=19% Similarity=0.237 Sum_probs=73.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh-------hhhhcCceEEeEEE-------Ee-----
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-------EEKKRGITIATAHV-------EY----- 123 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~-------~e~~~g~t~~~~~~-------~~----- 123 (330)
+....|.++|-.|+||||.|..|.......|........+..+.. +-...|..+-.... -|
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 446788999999999999999999888887775544322211110 11122333322110 01
Q ss_pred -eeCCeeEEEEeCCC----chhhHHHHHHh---hhc-----cCeEEEEEeCCCCCchhhHHHHHHH-HHcCCCeEEEEEe
Q 020176 124 -ETAKRHYAHVDCPG----HADYVKNMITG---AAQ-----MDGGILVVSAPDGPMPQTKEHILLA-RQVGVPSLVCFLN 189 (330)
Q Consensus 124 -~~~~~~i~iiDtPG----~~~~~~~~~~~---~~~-----~d~~l~vvda~~~~~~~~~~~l~~~-~~~~~p~iivviN 189 (330)
...+..+.|+||+| ..+.+.+.... +.. ++-+++++||..|-.. ....+.. ...++. - +++|
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna--l~QAk~F~eav~l~-G-iIlT 292 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA--LSQAKIFNEAVGLD-G-IILT 292 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH--HHHHHHHHHhcCCc-e-EEEE
Confidence 12467899999999 23344443322 222 2348888899876322 1122222 233566 4 5799
Q ss_pred eccCcC
Q 020176 190 KVDLVE 195 (330)
Q Consensus 190 K~D~~~ 195 (330)
|+|-..
T Consensus 293 KlDgtA 298 (340)
T COG0552 293 KLDGTA 298 (340)
T ss_pred ecccCC
Confidence 999543
No 435
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=97.98 E-value=7.8e-05 Score=54.77 Aligned_cols=64 Identities=22% Similarity=0.283 Sum_probs=48.6
Q ss_pred EEEEEEEEeeCCC-ceEEEEEEEeeeeecCCEEEEecCCC-----CCCceEEEEEEEeCc----eeecEEecCC
Q 020176 267 LMPIEDVFSIQGR-GTVATGRVEQGTIKVGEEVEVLGLTQ-----GPSLKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 267 ~~~i~~~~~~~~~-G~v~~g~v~~G~l~~g~~v~~~~~~~-----~~~~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
.++|+++...|.. |.+.++||.+|+|++||.|++...+. +.....+|..|...+ .++++|.||.
T Consensus 2 ~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGd 75 (94)
T cd04090 2 VVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGN 75 (94)
T ss_pred EEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCC
Confidence 4678899888887 67999999999999999998764221 112346777776655 6899999984
No 436
>PRK12288 GTPase RsgA; Reviewed
Probab=97.98 E-value=7.5e-05 Score=68.29 Aligned_cols=87 Identities=20% Similarity=0.273 Sum_probs=57.3
Q ss_pred hhccCeEEEEEeCCCCCchhh-HHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEee
Q 020176 149 AAQMDGGILVVSAPDGPMPQT-KEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGS 227 (330)
Q Consensus 149 ~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~S 227 (330)
..++|.+++|++......... ..++..+...++| .++|+||+|+.++.+. +.+. +..+.++.++ ++++++|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~-~VIVlNK~DL~~~~~~-~~~~-~~~~~y~~~g-----~~v~~vS 189 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIE-PLIVLNKIDLLDDEGR-AFVN-EQLDIYRNIG-----YRVLMVS 189 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCC-EEEEEECccCCCcHHH-HHHH-HHHHHHHhCC-----CeEEEEe
Confidence 467899999998765444333 4455556667888 6689999999874321 1122 2223334443 5899999
Q ss_pred ccccccCCccccchhhHHHHHHHHhh
Q 020176 228 ATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 228 a~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
|+++ .++.+|++.+..
T Consensus 190 A~tg----------~GideL~~~L~~ 205 (347)
T PRK12288 190 SHTG----------EGLEELEAALTG 205 (347)
T ss_pred CCCC----------cCHHHHHHHHhh
Confidence 9986 457777777754
No 437
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.97 E-value=3.6e-05 Score=63.13 Aligned_cols=123 Identities=20% Similarity=0.251 Sum_probs=76.8
Q ss_pred EEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhh-hcCceEEe--E--EEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEK-KRGITIAT--A--HVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 70 v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~-~~g~t~~~--~--~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
.-+..|+||||+.-.|.......|+.......+........ .++..... . ........+.++|+|||+... ..
T Consensus 5 ~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~--~~ 82 (169)
T cd02037 5 MSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTG--DE 82 (169)
T ss_pred ecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCc--HH
Confidence 45678899999999998877777765544321111110000 00000000 0 000112457899999998532 22
Q ss_pred HHHh--hhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 145 MITG--AAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 145 ~~~~--~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
.... +..+|.+++|+.+.........+.+..+...+.+.+-+|+|+.+..
T Consensus 83 ~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 83 HLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred HHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 2222 2578999999998876677788888899999998677889999854
No 438
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.97 E-value=1.2e-05 Score=74.74 Aligned_cols=58 Identities=28% Similarity=0.365 Sum_probs=43.3
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (330)
.+...+|++||.||+||||+||+|. |.....++ ..+|.|....++.++ ..+.+.||||
T Consensus 311 ~~~~vtVG~VGYPNVGKSSTINaLv------G~KkVsVS---------~TPGkTKHFQTi~ls---~~v~LCDCPG 368 (562)
T KOG1424|consen 311 YKDVVTVGFVGYPNVGKSSTINALV------GRKKVSVS---------STPGKTKHFQTIFLS---PSVCLCDCPG 368 (562)
T ss_pred CCceeEEEeecCCCCchhHHHHHHh------cCceeeee---------cCCCCcceeEEEEcC---CCceecCCCC
Confidence 3456899999999999999999999 54443332 224777666666554 4689999999
No 439
>PRK13796 GTPase YqeH; Provisional
Probab=97.96 E-value=7.5e-05 Score=68.98 Aligned_cols=86 Identities=20% Similarity=0.115 Sum_probs=51.5
Q ss_pred hhHHHHHHhhhccC-eEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 140 DYVKNMITGAAQMD-GGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 140 ~~~~~~~~~~~~~d-~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
+|.+ +...+...| .+++|+|+.+....... .+.... .+.| +++|+||+|+.+.....+.+.+.+..+.+..++.
T Consensus 58 ~~~~-~l~~i~~~~~lIv~VVD~~D~~~s~~~-~L~~~~-~~kp-viLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~- 132 (365)
T PRK13796 58 DFLK-LLNGIGDSDALVVNVVDIFDFNGSWIP-GLHRFV-GNNP-VLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLR- 132 (365)
T ss_pred HHHH-HHHhhcccCcEEEEEEECccCCCchhH-HHHHHh-CCCC-EEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCC-
Confidence 4444 566666666 88999999874332222 222211 2566 7889999999863222233444445555665542
Q ss_pred CCccEEEeecccc
Q 020176 219 DEIPIIRGSATSA 231 (330)
Q Consensus 219 ~~~pv~~~Sa~~~ 231 (330)
...++.+||+++
T Consensus 133 -~~~v~~vSAk~g 144 (365)
T PRK13796 133 -PVDVVLISAQKG 144 (365)
T ss_pred -cCcEEEEECCCC
Confidence 125899999986
No 440
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.94 E-value=0.00013 Score=54.58 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=52.3
Q ss_pred EEEEc-CCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 68 VGTIG-HVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 68 I~v~G-~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
|++.| ..|+||||+.-.|.....+.|...... +.|.. ..++++|+|+..... ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~--d~d~~---------------------~d~viiD~p~~~~~~--~~ 56 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLI--DLDPQ---------------------YDYIIIDTPPSLGLL--TR 56 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEE--eCCCC---------------------CCEEEEeCcCCCCHH--HH
Confidence 56666 678999999999987766555432221 11111 568999999965432 23
Q ss_pred HhhhccCeEEEEEeCCCCCchhhHHHH
Q 020176 147 TGAAQMDGGILVVSAPDGPMPQTKEHI 173 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~~~~~~~l 173 (330)
..+..+|.++++++++........+.+
T Consensus 57 ~~l~~ad~viv~~~~~~~s~~~~~~~~ 83 (104)
T cd02042 57 NALAAADLVLIPVQPSPLDLDGLEKLL 83 (104)
T ss_pred HHHHHCCEEEEeccCCHHHHHHHHHHH
Confidence 666779999999998654333333333
No 441
>PRK00098 GTPase RsgA; Reviewed
Probab=97.94 E-value=1.4e-05 Score=71.82 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~ 87 (330)
..++++|++|+|||||+|+|++
T Consensus 165 k~~~~~G~sgvGKStlin~l~~ 186 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAP 186 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999984
No 442
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.00014 Score=62.61 Aligned_cols=136 Identities=15% Similarity=0.186 Sum_probs=74.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC--eeEEEEeCCCchh--
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD-- 140 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~-- 140 (330)
.+||.-+|.+|-|||||++.|....++.... ... .+++......+.+...+ .+++++||.|+.|
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~-------~H~-----~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQi 109 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPS-------THT-----LPNVKLQANTYELQESNVRLKLTIVDTVGFGDQI 109 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCC-------ccC-----CCCceeecchhhhhhcCeeEEEEEEeeccccccc
Confidence 4799999999999999999998543221110 000 11222222222222222 4689999999433
Q ss_pred -------------------hHHH------HHHhhh--ccCeEEEEEeCCC-CCchhhHHHHHHHHHcCCCeEEEEEeecc
Q 020176 141 -------------------YVKN------MITGAA--QMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (330)
Q Consensus 141 -------------------~~~~------~~~~~~--~~d~~l~vvda~~-~~~~~~~~~l~~~~~~~~p~iivviNK~D 192 (330)
|+++ .+..+. ..++++|.|.++. ++...+.-.+..+. ..-++|-||-|.|
T Consensus 110 nK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld--skVNIIPvIAKaD 187 (406)
T KOG3859|consen 110 NKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD--SKVNIIPVIAKAD 187 (406)
T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh--hhhhhHHHHHHhh
Confidence 2222 122222 4588999999875 33333332332222 2223677889999
Q ss_pred CcChHHHHHHHHHHHHHHHHhcC
Q 020176 193 LVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
.+...++. ..+.++..-+..-|
T Consensus 188 tisK~eL~-~FK~kimsEL~sng 209 (406)
T KOG3859|consen 188 TISKEELK-RFKIKIMSELVSNG 209 (406)
T ss_pred hhhHHHHH-HHHHHHHHHHHhcC
Confidence 99866553 34444444444444
No 443
>PRK01889 GTPase RsgA; Reviewed
Probab=97.90 E-value=8.3e-05 Score=68.41 Aligned_cols=82 Identities=28% Similarity=0.307 Sum_probs=55.7
Q ss_pred hhccCeEEEEEeCCCCCch-hhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEee
Q 020176 149 AAQMDGGILVVSAPDGPMP-QTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGS 227 (330)
Q Consensus 149 ~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~S 227 (330)
+.++|.+++|+++...+.. ....++..+...++++ ++|+||+|+.++.+ + ..+.+..+ . ...+++++|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~p-iIVLNK~DL~~~~~--~-~~~~~~~~----~---~g~~Vi~vS 178 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEP-VIVLTKADLCEDAE--E-KIAEVEAL----A---PGVPVLAVS 178 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCE-EEEEEChhcCCCHH--H-HHHHHHHh----C---CCCcEEEEE
Confidence 4678999999999766655 4556777788889994 57999999986421 1 11222222 1 237899999
Q ss_pred ccccccCCccccchhhHHHHHHHH
Q 020176 228 ATSALQGKNEEIGKKAILKLMDAV 251 (330)
Q Consensus 228 a~~~~~g~~~~~~~~~i~~ll~~l 251 (330)
++++ +++.+|.+++
T Consensus 179 a~~g----------~gl~~L~~~L 192 (356)
T PRK01889 179 ALDG----------EGLDVLAAWL 192 (356)
T ss_pred CCCC----------ccHHHHHHHh
Confidence 9986 3455565555
No 444
>PHA02518 ParA-like protein; Provisional
Probab=97.89 E-value=0.00038 Score=59.01 Aligned_cols=126 Identities=14% Similarity=0.176 Sum_probs=68.0
Q ss_pred EEEEEcC-CCCCHHHHHHHHHHHHHhcCccceeeccccCCChhh--hhc--Cc-eEEeEEEE--e------eeCCeeEEE
Q 020176 67 NVGTIGH-VDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEE--KKR--GI-TIATAHVE--Y------ETAKRHYAH 132 (330)
Q Consensus 67 ~I~v~G~-~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e--~~~--g~-t~~~~~~~--~------~~~~~~i~i 132 (330)
.|++.+. .|+||||+.-.|.......|......-.+....... ... +. -+...... + -.....++|
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~d~vi 81 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEGEPLIPVVRMGKSIRADLPKVASGYDYVV 81 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhcccCCCCCchhhccHHHHHHHHHHhccCCEEE
Confidence 3566654 559999999999877777665444321111100000 000 00 00000000 0 013468999
Q ss_pred EeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHH---c--CCCeEEEEEeeccCc
Q 020176 133 VDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ---V--GVPSLVCFLNKVDLV 194 (330)
Q Consensus 133 iDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~---~--~~p~iivviNK~D~~ 194 (330)
|||||... ......+..+|.+|+++.++........+.+..+.. . +.+.+.++.|+.+..
T Consensus 82 iD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 82 VDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred EeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 99999643 335566778999999999876333333333333322 2 456566777877644
No 445
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=97.86 E-value=0.00012 Score=53.71 Aligned_cols=64 Identities=27% Similarity=0.341 Sum_probs=48.8
Q ss_pred EEEEEEEEeeC-CCceEEEEEEEeeeeecCCEEEEecCCC-----CCCceEEEEEEEeCc----eeecEEecCC
Q 020176 267 LMPIEDVFSIQ-GRGTVATGRVEQGTIKVGEEVEVLGLTQ-----GPSLKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 267 ~~~i~~~~~~~-~~G~v~~g~v~~G~l~~g~~v~~~~~~~-----~~~~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
.+.|+++...+ +.|.+.++||.+|+|++||.|.+...+. ......+|..|...+ .++++|.||+
T Consensus 2 v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGd 75 (93)
T cd03700 2 VMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGN 75 (93)
T ss_pred eEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCC
Confidence 46788888888 8999999999999999999998765221 112346677765555 6889999985
No 446
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.84 E-value=0.00026 Score=61.77 Aligned_cols=80 Identities=24% Similarity=0.321 Sum_probs=42.3
Q ss_pred CeeEEEEeCCCchhh--------HHHHHHhhhccCeEEEEEeCCCCCch----hhHHHH-HHHHHcCCCeEEEEEeeccC
Q 020176 127 KRHYAHVDCPGHADY--------VKNMITGAAQMDGGILVVSAPDGPMP----QTKEHI-LLARQVGVPSLVCFLNKVDL 193 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~--------~~~~~~~~~~~d~~l~vvda~~~~~~----~~~~~l-~~~~~~~~p~iivviNK~D~ 193 (330)
.....++.|.|..+- ...-+..--..|+++-|+|+...... ...-++ +...+...... +++||.|+
T Consensus 145 kfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~AD~-II~NKtDl 223 (391)
T KOG2743|consen 145 KFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALADR-IIMNKTDL 223 (391)
T ss_pred CcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhhhe-eeeccccc
Confidence 456789999996552 22222223357999999999642110 000011 11111112224 36899999
Q ss_pred cChHHHHHHHHHHHH
Q 020176 194 VEDEELLELVEMELR 208 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~ 208 (330)
++.+++ ..+.+.++
T Consensus 224 i~~e~~-~~l~q~I~ 237 (391)
T KOG2743|consen 224 VSEEEV-KKLRQRIR 237 (391)
T ss_pred cCHHHH-HHHHHHHH
Confidence 996443 44444444
No 447
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=7.8e-05 Score=62.93 Aligned_cols=149 Identities=15% Similarity=0.194 Sum_probs=85.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|.++|.--+|||++-....+.+..+. ..+.. ....++.+ .+...-..+.+||.||+.+|....
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne-TlflE----------STski~~d----~is~sfinf~v~dfPGQ~~~Fd~s 92 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLE----------STSKITRD----HISNSFINFQVWDFPGQMDFFDPS 92 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc-eeEee----------ccCcccHh----hhhhhhcceEEeecCCccccCCCc
Confidence 3599999999999999776654332211 11111 00011111 011112457899999998875433
Q ss_pred ---HHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHHc----CCCeEEEEEeeccCcChHHHH---HHHHHHHHHHHHhc
Q 020176 146 ---ITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV----GVPSLVCFLNKVDLVEDEELL---ELVEMELRELLSFY 214 (330)
Q Consensus 146 ---~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~~----~~p~iivviNK~D~~~~~~~~---~~~~~~~~~~~~~~ 214 (330)
....+.+-+.++|||+.+... +.++-++...+.. ++. +=+.+-|.|-.+++... ..+.++..+-+...
T Consensus 93 ~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in-~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~ 171 (347)
T KOG3887|consen 93 FDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNIN-FEVFIHKVDGLSDDFKIETQRDIHQRTNDELADA 171 (347)
T ss_pred cCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCce-EEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhh
Confidence 334567889999999976433 2333333444443 344 66789999988743222 22333555566667
Q ss_pred CCCCCCccEEEeeccc
Q 020176 215 KFPGDEIPIIRGSATS 230 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~ 230 (330)
|+.+-.+.+..+|-..
T Consensus 172 gle~v~vsf~LTSIyD 187 (347)
T KOG3887|consen 172 GLEKVQVSFYLTSIYD 187 (347)
T ss_pred hhccceEEEEEeeecc
Confidence 7755455566666543
No 448
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.80 E-value=0.00023 Score=60.89 Aligned_cols=67 Identities=15% Similarity=0.066 Sum_probs=50.6
Q ss_pred eeEEEEeCCCchhhHHHH-HHhhh--ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 128 RHYAHVDCPGHADYVKNM-ITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~-~~~~~--~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
+.++++|||......... ...+. .+|.+++|+.+.........+.+..++..+.+..-+|+|++...
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 789999999754433322 22333 35889999999887778888999999999888667899998765
No 449
>PRK13695 putative NTPase; Provisional
Probab=97.79 E-value=0.00021 Score=58.89 Aligned_cols=118 Identities=16% Similarity=0.169 Sum_probs=60.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee-eCCe-------------eEE
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-TAKR-------------HYA 131 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~-------------~i~ 131 (330)
.+|+++|.+|+|||||+..+.+.....|...... .. ....+.......... .+. .... .=.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~--~~-~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~ 75 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKVGGF--YT-EEVREGGKRIGFKII--DLDTGEEGILARVGFPSRPRVGKY 75 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--Ec-HHHHhcCCccceEEE--EcCCCCeEEccccCCCCCCceeeE
Confidence 3799999999999999999887655434321111 00 000001111111110 111 0000 111
Q ss_pred EEeCCCchhhHHHHH-HhhhccCeEEEEEe---CCCCCchhhHHHHHHHHHcCCCeEEEEEeec
Q 020176 132 HVDCPGHADYVKNMI-TGAAQMDGGILVVS---APDGPMPQTKEHILLARQVGVPSLVCFLNKV 191 (330)
Q Consensus 132 iiDtPG~~~~~~~~~-~~~~~~d~~l~vvd---a~~~~~~~~~~~l~~~~~~~~p~iivviNK~ 191 (330)
+.|.-|.+.+..... ..+..+|+ +++| ..+....+..+.+..+...+.| +++++||.
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~-~i~v~h~~ 136 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKP-VIATLHRR 136 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCe-EEEEECch
Confidence 333334444433322 23344555 7888 5555556666777777777888 88889974
No 450
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00015 Score=66.88 Aligned_cols=138 Identities=20% Similarity=0.131 Sum_probs=77.8
Q ss_pred hhcCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCC-hhhhhc----------CceEEeEEEE----
Q 020176 58 TFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA-PEEKKR----------GITIATAHVE---- 122 (330)
Q Consensus 58 ~~~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~-~~e~~~----------g~t~~~~~~~---- 122 (330)
...+++++..|.++|-.|+||||-+..+.-.+.+++....+...+..+. ..|+-+ |..+.....-
T Consensus 371 sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd 450 (587)
T KOG0781|consen 371 SARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKD 450 (587)
T ss_pred HHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCC
Confidence 3445567889999999999999999998877666665443322221111 111111 1111110000
Q ss_pred -----------eeeCCeeEEEEeCCCchh----hHHHHHHh--hhccCeEEEEEeCCCCCc--hhhHHHHHHHHHcCCCe
Q 020176 123 -----------YETAKRHYAHVDCPGHAD----YVKNMITG--AAQMDGGILVVSAPDGPM--PQTKEHILLARQVGVPS 183 (330)
Q Consensus 123 -----------~~~~~~~i~iiDtPG~~~----~~~~~~~~--~~~~d~~l~vvda~~~~~--~~~~~~l~~~~~~~~p~ 183 (330)
....+..++++||+|-.. ++...... +..+|.+++|=.|--|-. .|...+-..+.....|+
T Consensus 451 ~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r 530 (587)
T KOG0781|consen 451 AAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPR 530 (587)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCcc
Confidence 123567899999999332 33333222 336899999977654322 33333333444344222
Q ss_pred ---EEEEEeeccCcCh
Q 020176 184 ---LVCFLNKVDLVED 196 (330)
Q Consensus 184 ---iivviNK~D~~~~ 196 (330)
. ++++|+|.+++
T Consensus 531 ~id~-~~ltk~dtv~d 545 (587)
T KOG0781|consen 531 LIDG-ILLTKFDTVDD 545 (587)
T ss_pred ccce-EEEEeccchhh
Confidence 4 57999999874
No 451
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=97.72 E-value=0.00027 Score=59.82 Aligned_cols=68 Identities=25% Similarity=0.199 Sum_probs=50.5
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
...++|+|||...... ........+|.+|+|+++...........++.+...+.+.+-+|+||.|...
T Consensus 127 ~yD~ViiD~pp~~~~~-~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 127 YFDYIIIDTPPIGTVT-DAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred cCCEEEEeCCCccccc-hHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 4678999999733221 1222345689999999998776777777888888888887778999999654
No 452
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=97.72 E-value=0.00015 Score=60.67 Aligned_cols=126 Identities=19% Similarity=0.230 Sum_probs=75.0
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhh--------hcCce-----E-E--e--------------
Q 020176 69 GTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEK--------KRGIT-----I-A--T-------------- 118 (330)
Q Consensus 69 ~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~--------~~g~t-----~-~--~-------------- 118 (330)
+.-+..|+||||+.-.|.......|+.....-.+........ ..+.. . . .
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAILKNFESQDIYQGEEYLDPEL 82 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCHHESCCHHHHHHHCHCHHHHH
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccceehhhhhhccchhhhhhhhhhhHHHH
Confidence 345678899999999998888777765544322111110000 00000 0 0 0
Q ss_pred ---EEEEeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcC--CCeEEEEEeeccC
Q 020176 119 ---AHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG--VPSLVCFLNKVDL 193 (330)
Q Consensus 119 ---~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~--~p~iivviNK~D~ 193 (330)
....+......++|+|||+..... ....+..+|.+|++++++..........+..+...+ .+.+-+|+||++.
T Consensus 83 l~~~l~~l~~~~yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~ 160 (195)
T PF01656_consen 83 LREILESLIKSDYDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDP 160 (195)
T ss_dssp HHHHHHHHHHTTSSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETS
T ss_pred HHHHHHHhhhccccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCC
Confidence 000001123789999998855443 455667899999999997644445556666677666 3346789999987
Q ss_pred cCh
Q 020176 194 VED 196 (330)
Q Consensus 194 ~~~ 196 (330)
-..
T Consensus 161 ~~~ 163 (195)
T PF01656_consen 161 GNE 163 (195)
T ss_dssp CCH
T ss_pred Ccc
Confidence 653
No 453
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=97.66 E-value=0.00045 Score=59.09 Aligned_cols=75 Identities=21% Similarity=0.363 Sum_probs=55.4
Q ss_pred EEEeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCC--------CCchhhHHHHHHHHH------c-CCCeE
Q 020176 120 HVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD--------GPMPQTKEHILLARQ------V-GVPSL 184 (330)
Q Consensus 120 ~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~--------~~~~~~~~~l~~~~~------~-~~p~i 184 (330)
...|..+...+..+|..|+.+-.+.|+.......++|+|+.++. .-+....+.+.+.+. + .+. +
T Consensus 194 et~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tis-v 272 (379)
T KOG0099|consen 194 ETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTIS-V 272 (379)
T ss_pred eEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhh-e
Confidence 33445556678999999999999999999999999999998875 222334555555442 1 244 8
Q ss_pred EEEEeeccCcC
Q 020176 185 VCFLNKVDLVE 195 (330)
Q Consensus 185 ivviNK~D~~~ 195 (330)
|+++||-|+..
T Consensus 273 IlFLNKqDlla 283 (379)
T KOG0099|consen 273 ILFLNKQDLLA 283 (379)
T ss_pred eEEecHHHHHH
Confidence 89999999876
No 454
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.66 E-value=0.00017 Score=76.23 Aligned_cols=115 Identities=20% Similarity=0.217 Sum_probs=58.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC----ch---
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG----HA--- 139 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG----~~--- 139 (330)
=.+|+|++|+||||+++.- + .. +......... .....+-|.. ..|.. ..+-++|||+| ++
T Consensus 113 WYlviG~~gsGKtt~l~~s-g------l~-~pl~~~~~~~-~~~~~~~t~~---c~wwf-~~~avliDtaG~y~~~~~~~ 179 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-G------LK-FPLAERLGAA-ALRGVGGTRN---CDWWF-TDEAVLIDTAGRYTTQDSDP 179 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-C------CC-CcCchhhccc-cccCCCCCcc---cceEe-cCCEEEEcCCCccccCCCcc
Confidence 3579999999999999864 1 10 0000000000 0000111221 22222 24568999999 11
Q ss_pred -h-------hHHHHHHh--hhccCeEEEEEeCCCCCc---hh-------hHHHHHHHH-H--cCCCeEEEEEeeccCcC
Q 020176 140 -D-------YVKNMITG--AAQMDGGILVVSAPDGPM---PQ-------TKEHILLAR-Q--VGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 140 -~-------~~~~~~~~--~~~~d~~l~vvda~~~~~---~~-------~~~~l~~~~-~--~~~p~iivviNK~D~~~ 195 (330)
. |+...... -+-.|++|++||+.+=.. .+ .+..+..+. . ..+| +.+++||||+..
T Consensus 180 ~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~P-VYvv~Tk~Dll~ 257 (1169)
T TIGR03348 180 EEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFP-VYLVLTKADLLA 257 (1169)
T ss_pred cccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecchhhc
Confidence 1 22222111 124799999999975221 11 111122121 2 3578 889999999885
No 455
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.65 E-value=0.00058 Score=58.18 Aligned_cols=67 Identities=13% Similarity=-0.078 Sum_probs=39.2
Q ss_pred CeeEEEEeCCCchhhHHHHHHhh--hccCeEEEEEeCCCCCchhhHHHHHHHHHc----CCCeEEEEEeeccCc
Q 020176 127 KRHYAHVDCPGHADYVKNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQV----GVPSLVCFLNKVDLV 194 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~--~~~d~~l~vvda~~~~~~~~~~~l~~~~~~----~~p~iivviNK~D~~ 194 (330)
.+.+++|||||....... ...+ ..+|.+++++..+.-........++.+... +.+...+++||++..
T Consensus 116 ~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred CCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 478999999885421111 0112 379999999988653222233333444433 444345789999854
No 456
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.0029 Score=56.37 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..-..|+++|..|+|||||++.|...
T Consensus 186 tdf~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHhcc
Confidence 33457799999999999999999754
No 457
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=97.57 E-value=0.00083 Score=59.38 Aligned_cols=66 Identities=12% Similarity=0.011 Sum_probs=40.2
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHH----HcCCCeEEEEEeeccC
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR----QVGVPSLVCFLNKVDL 193 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~----~~~~p~iivviNK~D~ 193 (330)
.+.++||||||..... .+...+..+|.+|+++.++........+.+..+. ..+++..-+|+|++|.
T Consensus 115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 3678999999854321 1223467799999999886543333333333332 2355544468999983
No 458
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=97.51 E-value=0.0028 Score=55.56 Aligned_cols=70 Identities=11% Similarity=0.010 Sum_probs=48.6
Q ss_pred CCeeEEEEeCCCchhhHHH---------HHHhhh--ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 126 AKRHYAHVDCPGHADYVKN---------MITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~---------~~~~~~--~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
..+.++++|||......+. ....+. ..+.+++|+....-...++.+.+..+...+++..-+|+||+...
T Consensus 123 ~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~ 202 (254)
T cd00550 123 AEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPE 202 (254)
T ss_pred CCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCccc
Confidence 3578999999874332211 111222 24578889988776677888888999999998667899998754
Q ss_pred C
Q 020176 195 E 195 (330)
Q Consensus 195 ~ 195 (330)
.
T Consensus 203 ~ 203 (254)
T cd00550 203 D 203 (254)
T ss_pred c
Confidence 3
No 459
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.51 E-value=5.2e-05 Score=68.29 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=30.5
Q ss_pred hhhhhhhhcCCcceeEEEEEcCCCCCHHHHHHHHHH
Q 020176 52 WWRSMATFTRTKLHVNVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 52 ~~~~~~~~~~~~~~~~I~v~G~~~~GKSTLi~~L~~ 87 (330)
.++....+...++++.|+++|.+|+|||++||.|-.
T Consensus 294 llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~ 329 (572)
T KOG2423|consen 294 LLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRK 329 (572)
T ss_pred HHHHHHhhccCccceeeeeecCCCCchHHHHHHHhh
Confidence 345566667788999999999999999999999973
No 460
>CHL00175 minD septum-site determining protein; Validated
Probab=97.50 E-value=0.0024 Score=56.86 Aligned_cols=66 Identities=20% Similarity=0.292 Sum_probs=47.4
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
.+.++|+|||+.... .....+..+|.+++|++++..........+..+...+.+.+-+|+|+++..
T Consensus 126 ~yD~VIiDtpp~~~~--~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~ 191 (281)
T CHL00175 126 GYDYILIDCPAGIDV--GFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPD 191 (281)
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChh
Confidence 568999999985432 334455679999999988765445556666777777766677889999743
No 461
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.49 E-value=0.0023 Score=55.25 Aligned_cols=122 Identities=18% Similarity=0.106 Sum_probs=67.5
Q ss_pred EEEEc-CCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh--h-hhh-cCceEE--eEEE---E----------eeeCC
Q 020176 68 VGTIG-HVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP--E-EKK-RGITIA--TAHV---E----------YETAK 127 (330)
Q Consensus 68 I~v~G-~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~--~-e~~-~g~t~~--~~~~---~----------~~~~~ 127 (330)
|++.+ ..|+||||+.-.|.......|+.....-.+...+- . ++. ...... .... . .....
T Consensus 4 I~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 83 (231)
T PRK13849 4 LTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQG 83 (231)
T ss_pred EEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHhhccccCCCccceecCCCHHHHHHHHHHHHhhCC
Confidence 44444 46799999999998887777765443311111110 0 000 000000 0000 0 11135
Q ss_pred eeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHH------HcCCCeEEEEEeecc
Q 020176 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR------QVGVPSLVCFLNKVD 192 (330)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~------~~~~p~iivviNK~D 192 (330)
+.++||||||... ......+..+|.+|+.+.++.-....+.+.+..+. ..+++ ..+++|.++
T Consensus 84 yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~-~~iv~~~~~ 151 (231)
T PRK13849 84 FDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIP-TAILRQRVP 151 (231)
T ss_pred CCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEEEecc
Confidence 7899999999665 33455677899999888876533333333332222 23567 558899987
No 462
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=97.49 E-value=0.0034 Score=54.71 Aligned_cols=66 Identities=21% Similarity=0.316 Sum_probs=46.8
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
...++|+|||+.... .+...+..+|.++++++++..........+..+...+.+.+.+++|+.+..
T Consensus 108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 468999999985443 344456679999999998764444445555556666777566899999864
No 463
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.47 E-value=7.2e-05 Score=67.58 Aligned_cols=58 Identities=24% Similarity=0.400 Sum_probs=41.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (330)
+..++++|+|.+|+||||+||+|..... +..-..+|+|.......+ +..+.|+|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~---------------C~vg~~pGvT~smqeV~L---dk~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKA---------------CNVGNVPGVTRSMQEVKL---DKKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcc---------------ccCCCCccchhhhhheec---cCCceeccCCce
Confidence 6778999999999999999999985321 111122366665554444 467999999993
No 464
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.46 E-value=0.0011 Score=49.50 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=50.6
Q ss_pred EEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCce-----------eecEEec
Q 020176 268 MPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKK-----------ILDRGEV 328 (330)
Q Consensus 268 ~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~-----------~~~~a~~ 328 (330)
..|.++...+|.|+++.--|.+|+|++||.|.++.... ++..+|++|-..+. ++++|.|
T Consensus 3 gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~G--pi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~a 72 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNG--PIVTKVRALLKPQPLKELRVKSRFIHVKEVKA 72 (110)
T ss_pred EEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCC--CceEEEeEecCCCCchhhccccccceeeEEec
Confidence 46788889999999999999999999999998876543 77899999988885 7888874
No 465
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.46 E-value=0.0041 Score=49.62 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=27.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCcc
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKA 95 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~ 95 (330)
..++|.|.|+||+|||||+..+.......|..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k 35 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYK 35 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCce
Confidence 34699999999999999999998877776643
No 466
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.45 E-value=0.0013 Score=58.14 Aligned_cols=72 Identities=31% Similarity=0.351 Sum_probs=52.1
Q ss_pred ccCeEEEEEeCCCCCc--hhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeec
Q 020176 151 QMDGGILVVSAPDGPM--PQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSA 228 (330)
Q Consensus 151 ~~d~~l~vvda~~~~~--~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa 228 (330)
+.|-+++|+.+.++.. ....++|-.+...++.++ +++||+|+.++++... ++.......+| .+++.+|+
T Consensus 79 n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pv-IvlnK~DL~~~~~~~~---~~~~~~y~~~g-----y~v~~~s~ 149 (301)
T COG1162 79 NNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPV-IVLNKIDLLDDEEAAV---KELLREYEDIG-----YPVLFVSA 149 (301)
T ss_pred ccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEE-EEEEccccCcchHHHH---HHHHHHHHhCC-----eeEEEecC
Confidence 4677788888876433 445667777888899856 6799999998654432 35556666666 67999999
Q ss_pred ccc
Q 020176 229 TSA 231 (330)
Q Consensus 229 ~~~ 231 (330)
+++
T Consensus 150 ~~~ 152 (301)
T COG1162 150 KNG 152 (301)
T ss_pred cCc
Confidence 885
No 467
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.44 E-value=0.00081 Score=49.23 Aligned_cols=58 Identities=28% Similarity=0.164 Sum_probs=49.5
Q ss_pred EEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc-eeecEEecCC
Q 020176 267 LMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK-KILDRGEVSW 330 (330)
Q Consensus 267 ~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~-~~~~~a~~g~ 330 (330)
+..|.+....++.|.++...|.+|+|++||.+..+. . -.+|++|...+ +++++|.||+
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~-~-----~gkVr~l~d~~g~~v~~a~Ps~ 60 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGT-T-----YGKVRAMFDENGKRVKEAGPST 60 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcc-c-----ccEEEEEECCCCCCCCEECCCC
Confidence 356788888999999999999999999999997653 2 36999998887 7999999874
No 468
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.41 E-value=0.0011 Score=54.20 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g 93 (330)
...++|+|.+|+|||||+.+|.......|
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g 34 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCARG 34 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhcC
Confidence 34789999999999999999997654433
No 469
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.41 E-value=0.00035 Score=57.44 Aligned_cols=44 Identities=30% Similarity=0.157 Sum_probs=33.6
Q ss_pred CeEEEEEeCCCCCchhhHHHHHH--HHHcCCCeEEEEEeeccCcChH
Q 020176 153 DGGILVVSAPDGPMPQTKEHILL--ARQVGVPSLVCFLNKVDLVEDE 197 (330)
Q Consensus 153 d~~l~vvda~~~~~~~~~~~l~~--~~~~~~p~iivviNK~D~~~~~ 197 (330)
|++++|+|+..+......+.... +...+.| +|+|+||+|+++.+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp-~IlVlNK~DL~~~~ 46 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKK-LVLVLNKIDLVPKE 46 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCC-EEEEEehhhcCCHH
Confidence 78999999988776666666555 3345677 78899999998754
No 470
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.40 E-value=0.0007 Score=61.79 Aligned_cols=35 Identities=34% Similarity=0.379 Sum_probs=29.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccce
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKA 97 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~ 97 (330)
....+++|+|+.+||||||..-|+......|+...
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~ 105 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVA 105 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEE
Confidence 45578999999999999999999988877776443
No 471
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=97.36 E-value=0.0016 Score=58.23 Aligned_cols=65 Identities=9% Similarity=-0.029 Sum_probs=38.6
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHc----CCCeEEEEEeecc
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV----GVPSLVCFLNKVD 192 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~----~~p~iivviNK~D 192 (330)
.+.++++||||.... ......+..||.+|++++++..........++.+... +++..-+++|+.|
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 467999999986321 1122445679999999988643222233333333322 3443447889987
No 472
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.31 E-value=0.0013 Score=42.77 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=25.1
Q ss_pred HHHhhh-ccCeEEEEEeCCCCCchhhHH---HHHHHHH-c-CCCeEEEEEeecc
Q 020176 145 MITGAA-QMDGGILVVSAPDGPMPQTKE---HILLARQ-V-GVPSLVCFLNKVD 192 (330)
Q Consensus 145 ~~~~~~-~~d~~l~vvda~~~~~~~~~~---~l~~~~~-~-~~p~iivviNK~D 192 (330)
...+++ ..++++|++|.++...-...+ .+..++. + +.| +++|+||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCC-EEEEEeccC
Confidence 344444 578999999999854433333 3333333 3 677 889999998
No 473
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=97.30 E-value=0.0019 Score=57.12 Aligned_cols=66 Identities=12% Similarity=-0.003 Sum_probs=38.6
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHH----cCCCeEEEEEeeccC
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ----VGVPSLVCFLNKVDL 193 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~----~~~p~iivviNK~D~ 193 (330)
.+.++||||||..... .....+..+|.+|+++.............+..+.. .+++..-+|+|++|.
T Consensus 115 ~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 115 DYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred cCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 4689999999853211 11234567999999887643322223333333322 346645578999874
No 474
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.27 E-value=0.0061 Score=59.76 Aligned_cols=164 Identities=19% Similarity=0.231 Sum_probs=98.4
Q ss_pred EeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEe-eccCcChHHHHHHHHHHHHHHH
Q 020176 133 VDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLN-KVDLVEDEELLELVEMELRELL 211 (330)
Q Consensus 133 iDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviN-K~D~~~~~~~~~~~~~~~~~~~ 211 (330)
-||-|..+-+...+..+..-+.-+=++.+.-|.. +..-+.++...+ . +|+..| |++ . ..+++.
T Consensus 392 ad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG~i--~~~Dv~~a~~~~-a-~i~~Fnv~~~----~--------~~~~~a 455 (587)
T TIGR00487 392 ADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVGGI--TETDISLASASN-A-IIIGFNVRPD----A--------TAKNVA 455 (587)
T ss_pred eCCcchHHHHHHHHHhhcccCCeEEEEEeecCCC--chhhHHHHHhcC-C-EEEEEecCCC----H--------HHHHHH
Confidence 4777766666666666655565566666544432 222333333343 2 344554 222 1 234444
Q ss_pred HhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeee
Q 020176 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGT 291 (330)
Q Consensus 212 ~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~ 291 (330)
+..+ ++++.-+-.. .-++++-+++...++ |.....---...|.++|..+..|.++..+|..|+
T Consensus 456 ~~~~-----v~i~~~~iIY-----------~l~d~~~~~~~~~~~-~~~~~~~~g~a~v~~vf~~~~~~~iaG~~V~~G~ 518 (587)
T TIGR00487 456 EAEN-----VDIRYYSVIY-----------KLIDEIRAAMKGMLD-PEYEEEIIGQAEVRQVFNVPKIGNIAGCYVTEGV 518 (587)
T ss_pred HHcC-----CeEEEeChHH-----------HHHHHHHHHHHhccC-cceeeEeeeeEEEEEEEecCCCCEEEEEEEecCE
Confidence 5444 4555332111 112333333333333 2222222345667899999988999999999999
Q ss_pred eecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 292 IKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 292 l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
|++|..+++...+.. -+..+|.||++++++++++..|+
T Consensus 519 i~~~~~~~v~r~~~~-i~~g~i~sl~~~k~~v~ev~~g~ 556 (587)
T TIGR00487 519 IKRGNPLRVIRDGVV-IFEGEIDSLKRFKDDVKEVSNGY 556 (587)
T ss_pred EecCCeEEEEeCCEE-EEeccchHhhccCccccEECCCC
Confidence 999999999875431 24678999999999999999986
No 475
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=97.24 E-value=0.0043 Score=54.34 Aligned_cols=65 Identities=18% Similarity=0.330 Sum_probs=47.0
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccC
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~ 193 (330)
...++|+|||+.... .....+..+|.+++++.+...........+..+...+..++.+++|+++.
T Consensus 111 ~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 367899999985432 23445678999999999876555556666677776666557789999985
No 476
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.23 E-value=0.0022 Score=51.95 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCc
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGK 94 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~ 94 (330)
.|+|+|.+|+|||||+++|.......|.
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l~~~g~ 30 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPALSARGL 30 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 6899999999999999999976655443
No 477
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=97.22 E-value=0.005 Score=54.37 Aligned_cols=29 Identities=34% Similarity=0.469 Sum_probs=24.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCcc
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKA 95 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~ 95 (330)
+|+|+|..|+||||+.-.|.......|+.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~k 31 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKK 31 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCe
Confidence 57888999999999999998777766653
No 478
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=97.22 E-value=0.0035 Score=55.43 Aligned_cols=65 Identities=9% Similarity=-0.026 Sum_probs=38.4
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHH----HcCCCeEEEEEeecc
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR----QVGVPSLVCFLNKVD 192 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~----~~~~p~iivviNK~D 192 (330)
.+.++||||||...... +...+..+|.+|+++.+...........+..+. ..+++..-+++|+.+
T Consensus 117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 46799999998542211 233466799999999775432222223333222 335553447899976
No 479
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.22 E-value=0.0024 Score=51.55 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccce
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKA 97 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~ 97 (330)
.-++|+|..|+|||||+.+|.......|...+
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa 34 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKARGYRVA 34 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHHHhCCcEEE
Confidence 35899999999999999999987777665433
No 480
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=97.19 E-value=0.0022 Score=47.11 Aligned_cols=58 Identities=28% Similarity=0.192 Sum_probs=47.8
Q ss_pred EEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc-eeecEEecCC
Q 020176 267 LMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK-KILDRGEVSW 330 (330)
Q Consensus 267 ~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~-~~~~~a~~g~ 330 (330)
+..|.+....++.|+++...|.+|+|++||.+..+. . -.+|+++...+ +.+.+|.||+
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~-~-----~GkVr~~~d~~g~~v~~a~Ps~ 60 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGG-T-----YGKIRTMVDENGKALLEAGPST 60 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECC-c-----cceEEEEECCCCCCccccCCCC
Confidence 356778888999999999999999999999997653 2 37889887755 6888888874
No 481
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.17 E-value=0.0032 Score=49.82 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccc
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAK 96 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~ 96 (330)
.|+|+|+.|+|||||+..|+......|...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v 31 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRV 31 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--E
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCce
Confidence 689999999999999999998877666533
No 482
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.17 E-value=0.00042 Score=61.75 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=24.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhc
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEE 92 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~ 92 (330)
...|+++|++|+||||++..|.......
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3578999999999999999998776554
No 483
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.16 E-value=0.015 Score=58.81 Aligned_cols=163 Identities=18% Similarity=0.227 Sum_probs=97.3
Q ss_pred eCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEe-eccCcChHHHHHHHHHHHHHHHH
Q 020176 134 DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLN-KVDLVEDEELLELVEMELRELLS 212 (330)
Q Consensus 134 DtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviN-K~D~~~~~~~~~~~~~~~~~~~~ 212 (330)
|+-|..+-+...+..+..-+.-+=++.+.-|...+. -+.++...+ . +|+.+| |.+ . .++++.+
T Consensus 595 d~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG~it~~--Dv~la~~~~-a-~ii~Fnv~~~----~--------~~~~~a~ 658 (787)
T PRK05306 595 DVQGSVEALKDSLEKLSTDEVKVNIIHSGVGAITES--DVTLAAASN-A-IIIGFNVRPD----A--------KARKLAE 658 (787)
T ss_pred CCcchHHHHHHHHHhhcccCCceEEEeeccCCCCHH--HHHHHHhcC-C-EEEEEcCCCC----H--------HHHHHHH
Confidence 666766666666665655555555555544432222 233333333 2 344444 222 1 2333444
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeee
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTI 292 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l 292 (330)
..+ +.+..-+-.. .-++++-+++...++ |.....---...|.++|.++..|.|+..+|..|.|
T Consensus 659 ~~~-----v~i~~~~iIY-----------~l~d~~~~~~~~~l~-~~~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~i 721 (787)
T PRK05306 659 QEG-----VDIRYYSIIY-----------DLIDDVKAAMSGMLE-PEYEEEIIGQAEVREVFKVSKVGTIAGCMVTEGKI 721 (787)
T ss_pred HcC-----CEEEEeChHH-----------HHHHHHHHHHhhccC-chhheeeeeeEEEEEEEecCCCCeEEEEEEeeCEE
Confidence 433 3444322111 113333333443343 33222233456788999999999999999999999
Q ss_pred ecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 293 KVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 293 ~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
+.|..+++...+.. -+..+|.||++++.+++++..|+
T Consensus 722 ~~~~~~rv~R~~~~-i~~g~i~slk~~k~~v~ev~~g~ 758 (787)
T PRK05306 722 KRNAKVRVLRDGVV-IYEGELESLKRFKDDVKEVRAGY 758 (787)
T ss_pred ecCCeEEEEeCCEE-EEEeEEehhcccCcCccEeCCCC
Confidence 99999999875442 35689999999999999999886
No 484
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.12 E-value=0.004 Score=53.01 Aligned_cols=122 Identities=18% Similarity=0.195 Sum_probs=67.1
Q ss_pred EEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhh--h---hcC-----ceEEeE-EE-E-------eeeCCeeE
Q 020176 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEE--K---KRG-----ITIATA-HV-E-------YETAKRHY 130 (330)
Q Consensus 70 v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e--~---~~g-----~t~~~~-~~-~-------~~~~~~~i 130 (330)
.-...|+||||++-.|.......|......-.++.++-.. . ..| +.+... .. . .+.....+
T Consensus 7 ~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~ 86 (231)
T PF07015_consen 7 ASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDF 86 (231)
T ss_pred ecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCE
Confidence 3456789999999999999888887666543332222110 0 111 111110 00 0 01134578
Q ss_pred EEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchh---hHHHHHHHH---HcCCCeEEEEEeeccCc
Q 020176 131 AHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQ---TKEHILLAR---QVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 131 ~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~---~~~~l~~~~---~~~~p~iivviNK~D~~ 194 (330)
+|+||+|...... ...+..+|.+|+=.-.+.-...+ +.+++.... ...+| .-|++|++.-.
T Consensus 87 VlvDleG~as~~~--~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip-~~Vl~Tr~~~~ 153 (231)
T PF07015_consen 87 VLVDLEGGASELN--DYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIP-AAVLFTRVPAA 153 (231)
T ss_pred EEEeCCCCCchhH--HHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCC-eeEEEecCCcc
Confidence 9999999665442 23345689887765554322222 233332221 33578 55889999743
No 485
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.016 Score=54.88 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=63.4
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceee
Q 020176 244 ILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKIL 323 (330)
Q Consensus 244 i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~ 323 (330)
++++-.++...+. |.....---...+..+|.+++.|.++...|..|.++.|..+.+..++.. -+..+|.|++++++++
T Consensus 393 ied~~~~~~g~l~-p~~~e~~~g~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~v-i~~G~i~sLk~~kddv 470 (509)
T COG0532 393 IEDVEAAMKGMLE-PEKKERVIGLAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVV-IYEGEVESLKRFKDDV 470 (509)
T ss_pred HHHHHHHHHhccc-hhhhhhcccceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeE-EEeeEEEeeeccCccH
Confidence 3444444444333 3322223334567889999999999999999999999999998864432 3468999999999999
Q ss_pred cEEecCC
Q 020176 324 DRGEVSW 330 (330)
Q Consensus 324 ~~a~~g~ 330 (330)
+++.+||
T Consensus 471 ~ev~~G~ 477 (509)
T COG0532 471 KEVRKGQ 477 (509)
T ss_pred hHhccCc
Confidence 9999997
No 486
>PRK01889 GTPase RsgA; Reviewed
Probab=97.10 E-value=0.00058 Score=62.90 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.+++++|.+|+|||||+|.|++.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47899999999999999999864
No 487
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.07 E-value=0.0014 Score=50.14 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAIT 86 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~ 86 (330)
+|+++|..|+|||+|+.++.
T Consensus 2 kvv~~G~~gvGKt~l~~~~~ 21 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFV 21 (124)
T ss_pred EEEEECCCChhHHHHHHHHh
Confidence 78999999999999999986
No 488
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=97.05 E-value=0.0055 Score=54.32 Aligned_cols=29 Identities=28% Similarity=0.396 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCcc
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKA 95 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~ 95 (330)
.|+|+|..|+||||+.-.|.....+.|+.
T Consensus 3 ~iav~gKGGVGKTT~a~nLA~~La~~G~r 31 (273)
T PRK13232 3 QIAIYGKGGIGKSTTTQNLTAALSTMGNK 31 (273)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhCCC
Confidence 57777999999999999887766666653
No 489
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.05 E-value=0.019 Score=57.53 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=101.4
Q ss_pred EeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEe-eccCcChHHHHHHHHHHHHHHH
Q 020176 133 VDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLN-KVDLVEDEELLELVEMELRELL 211 (330)
Q Consensus 133 iDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviN-K~D~~~~~~~~~~~~~~~~~~~ 211 (330)
-|+-|..+-+...+..+....+-+=|+.+.-|.. +..-+.++...+ . +|+..| |.+ . .++...
T Consensus 549 ad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG~i--t~~Dv~lA~~~~-a-~ii~Fnv~~~----~--------~~~~~a 612 (742)
T CHL00189 549 TDTQGSIEAIINSISQIPQKKVQLNILYASLGEV--TETDVEFASTTN-A-EILAFNTNLA----P--------GAKKAA 612 (742)
T ss_pred eCCcchHHHHHHHHHhcCCCcEEEEEEEeecCCC--CHHHHHHHHhcC-C-EEEEeeCCCC----H--------HHHHHH
Confidence 4888877777777666655555566666654433 223334444444 2 445555 222 1 233444
Q ss_pred HhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeee
Q 020176 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGT 291 (330)
Q Consensus 212 ~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~ 291 (330)
+..+ +.++.-+-.. .-++++-+++...++ |.....-.-++.|..+|.++. |.|+..+|..|.
T Consensus 613 ~~~~-----v~i~~~~iIY-----------~lid~~~~~~~~~l~-~~~~~~~~g~a~v~~vF~~~k-~~iaGc~V~~G~ 674 (742)
T CHL00189 613 RKLN-----IIIKEYQVIY-----------DLLEYIEALMEDLLD-PEYKKVPIGEAEVKTVFPLAK-RFVAGCRVTEGK 674 (742)
T ss_pred HHcC-----CEEEEeChHH-----------HHHHHHHHHHhhccC-ceeeeeeceeEEeeEEEecCC-CEEEEEEEecCE
Confidence 4444 4454322111 112333333333333 333333445677899999887 999999999999
Q ss_pred eecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 292 IKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 292 l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
|+.|..+++...+.. -+..+|.||++++.+++++..|+
T Consensus 675 i~~~~~~rv~R~~~~-i~~G~i~slk~~k~~v~ev~~g~ 712 (742)
T CHL00189 675 ITKNALIKVIRENKL-IYEGKITSLKRVKEDVEEAQEGN 712 (742)
T ss_pred EecCCeEEEEeCCeE-EEEeEEhhHhhcCccccEeCCCC
Confidence 999999999876542 35789999999999999999886
No 490
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.03 E-value=0.0057 Score=55.63 Aligned_cols=77 Identities=23% Similarity=0.122 Sum_probs=52.3
Q ss_pred EeCCC-chhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHH-HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHH
Q 020176 133 VDCPG-HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKVDLVEDEELLELVEMELREL 210 (330)
Q Consensus 133 iDtPG-~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~-~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~ 210 (330)
.|-++ ...|.++....+..+|++|.|+||.++......+.-+... ..|-+++|+|+||+|+++.+. .++...+
T Consensus 127 ~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv-----~e~Wl~Y 201 (435)
T KOG2484|consen 127 LDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREV-----VEKWLVY 201 (435)
T ss_pred ccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHH-----HHHHHHH
Confidence 34444 3347777777888999999999999977655555554443 344355999999999998542 2344455
Q ss_pred HHhc
Q 020176 211 LSFY 214 (330)
Q Consensus 211 ~~~~ 214 (330)
++.-
T Consensus 202 Lr~~ 205 (435)
T KOG2484|consen 202 LRRE 205 (435)
T ss_pred HHhh
Confidence 5543
No 491
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=97.03 E-value=0.0077 Score=52.24 Aligned_cols=68 Identities=21% Similarity=0.383 Sum_probs=46.6
Q ss_pred eeCCeeEEEEeCC-CchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeec
Q 020176 124 ETAKRHYAHVDCP-GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKV 191 (330)
Q Consensus 124 ~~~~~~i~iiDtP-G~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~ 191 (330)
++.+.++.+|||| |..|-.-.+...++..|++++|--..+-.....++.+.+++..++|-+=+|-|..
T Consensus 153 dwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs 221 (300)
T KOG3022|consen 153 DWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMS 221 (300)
T ss_pred CCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEeccc
Confidence 4556789999996 5555444455566666888888766554445667788899999999554555643
No 492
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=97.00 E-value=0.011 Score=53.66 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=26.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCcc
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKA 95 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~ 95 (330)
++.+.|++.|..|+||||+.-.|.......|+.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~r 61 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKR 61 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCc
Confidence 445688999999999999998887766665643
No 493
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=96.94 E-value=0.0077 Score=53.58 Aligned_cols=30 Identities=33% Similarity=0.361 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCcc
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKA 95 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~ 95 (330)
.+|+++|..|+||||+.-.|.......|+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~r 31 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKK 31 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCE
Confidence 368899999999999999998777777753
No 494
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.91 E-value=0.0033 Score=55.84 Aligned_cols=29 Identities=38% Similarity=0.472 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCcc
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKA 95 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~ 95 (330)
.|++.|..|+||||+.-.|.......|+.
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~ 30 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKK 30 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCe
Confidence 58899999999999999998777766653
No 495
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.89 E-value=0.029 Score=48.71 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=38.6
Q ss_pred eEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHH-HHHHHc--CCCeEEEEEeeccCcC
Q 020176 129 HYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHI-LLARQV--GVPSLVCFLNKVDLVE 195 (330)
Q Consensus 129 ~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l-~~~~~~--~~p~iivviNK~D~~~ 195 (330)
.++++|||+... ......+..+|.+++++.++..........+ .++... ..+ +-+|+|+.|...
T Consensus 116 D~viiD~pp~~~--~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~-~~iv~n~~~~~~ 182 (246)
T TIGR03371 116 DWVLIDVPRGPS--PITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIG-PHFLINQFDPAR 182 (246)
T ss_pred CEEEEECCCCch--HHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhccccccc-ceEEeeccCcch
Confidence 799999998432 3345566789999999988642222222122 222212 223 557899998653
No 496
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=96.87 E-value=0.009 Score=52.95 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=41.1
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEee
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNK 190 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK 190 (330)
.+.++|||||..... .........+|.+|+|+.+.........+.+..+...+.+.+=+|+|+
T Consensus 212 ~yD~ViiD~pp~~~~-~d~~~~~~~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 212 DYDVVIVDTPSAEHS-SDAQIVATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred cCCEEEEeCCCcccc-cHHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 356788888864322 223333456788888888876666666677777777777755566664
No 497
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=96.83 E-value=0.015 Score=51.03 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=45.7
Q ss_pred eeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEE--EEEeeccCcC
Q 020176 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLV--CFLNKVDLVE 195 (330)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~ii--vviNK~D~~~ 195 (330)
..+.|+|||+-.. ..+...+..+|.+++|....-.........+..+...+.+... +|+|+++-..
T Consensus 113 ~D~iliD~~aGl~--~~~~~~~~~sd~~viVt~pe~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~~~~ 180 (262)
T COG0455 113 YDYILIDTGAGLS--RDTLSFILSSDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGRRVVLNRVRSTK 180 (262)
T ss_pred CCEEEEeCCCCcc--HHHHHHHHhcCcEEEEeCCCcchHHHHHHHHHHHHHcCCccccceEEEEeccccc
Confidence 4799999987332 2334445556999999888665455566677778888877443 7899998433
No 498
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.0029 Score=65.82 Aligned_cols=113 Identities=20% Similarity=0.182 Sum_probs=58.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC----ch----
Q 020176 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG----HA---- 139 (330)
Q Consensus 68 I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG----~~---- 139 (330)
-+|+|++|+||||++..--- .+...... ........| |.. ..+ .-...-++|||.| +.
T Consensus 128 y~viG~pgsGKTtal~~sgl--------~Fpl~~~~-~~~~~~~~g-T~~---cdw-wf~deaVlIDtaGry~~q~s~~~ 193 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGL--------QFPLAEQM-GALGLAGPG-TRN---CDW-WFTDEAVLIDTAGRYITQDSADE 193 (1188)
T ss_pred eEEecCCCCCcchHHhcccc--------cCcchhhh-ccccccCCC-Ccc---cCc-ccccceEEEcCCcceecccCcch
Confidence 36899999999999865310 01000000 000001112 111 111 2235678999999 21
Q ss_pred hhHHHHH---------HhhhccCeEEEEEeCCCCC--chhhH-HHHHHHH----------HcCCCeEEEEEeeccCcC
Q 020176 140 DYVKNMI---------TGAAQMDGGILVVSAPDGP--MPQTK-EHILLAR----------QVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 140 ~~~~~~~---------~~~~~~d~~l~vvda~~~~--~~~~~-~~l~~~~----------~~~~p~iivviNK~D~~~ 195 (330)
.-...+. +..+-.|++|+.+|+.+=. ..+.. .+...++ ....| +.+++||+|+..
T Consensus 194 ~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~P-VYl~lTk~Dll~ 270 (1188)
T COG3523 194 VDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLP-VYLVLTKADLLP 270 (1188)
T ss_pred hhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCc-eEEEEecccccc
Confidence 1111221 2233579999999997622 22222 1222121 22568 889999999986
No 499
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=96.82 E-value=0.0058 Score=56.94 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=27.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCcccee
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAI 98 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~ 98 (330)
.|+|+|..|+|||||+..|+......|.....
T Consensus 3 Vi~IvG~sgSGKTTLiekLI~~L~~rG~rVav 34 (452)
T PRK14495 3 VYGIIGWKDAGKTGLVERLVAAIAARGFSVST 34 (452)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 57999999999999999999988887765544
No 500
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.80 E-value=0.011 Score=45.21 Aligned_cols=31 Identities=35% Similarity=0.517 Sum_probs=25.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccce
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKA 97 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~ 97 (330)
+|++.|.+|+||||+...|.....+.|....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~ 31 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVL 31 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 3789999999999999999877766665433
Done!