Query 020176
Match_columns 330
No_of_seqs 392 out of 3167
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 12:56:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2e_A Elongation factor TU (E 100.0 6.5E-45 2.2E-49 338.2 30.3 264 64-330 2-266 (397)
2 2c78_A Elongation factor TU-A; 100.0 5.8E-44 2E-48 332.9 31.5 268 60-330 6-284 (405)
3 3j2k_7 ERF3, eukaryotic polype 100.0 1.4E-42 4.8E-47 325.9 32.6 263 61-330 13-303 (439)
4 3avx_A Elongation factor TS, e 100.0 2.9E-42 1E-46 345.5 29.8 266 61-330 292-557 (1289)
5 1f60_A Elongation factor EEF1A 100.0 5.3E-42 1.8E-46 323.6 23.5 265 61-330 3-304 (458)
6 1jny_A EF-1-alpha, elongation 100.0 2.1E-41 7.3E-46 318.0 23.7 263 63-330 4-293 (435)
7 3p26_A Elongation factor 1 alp 100.0 1.2E-40 4E-45 316.9 27.9 265 62-330 30-338 (483)
8 3mca_A HBS1, elongation factor 100.0 6.2E-42 2.1E-46 331.6 15.5 265 60-330 172-465 (592)
9 1kk1_A EIF2gamma; initiation o 100.0 7E-39 2.4E-43 299.0 29.4 244 61-330 6-289 (410)
10 1r5b_A Eukaryotic peptide chai 100.0 2.2E-40 7.6E-45 313.3 18.1 262 62-330 40-333 (467)
11 1zun_B Sulfate adenylate trans 100.0 2.5E-39 8.7E-44 303.9 25.0 264 62-330 21-304 (434)
12 3izq_1 HBS1P, elongation facto 100.0 7.5E-40 2.6E-44 317.8 20.6 265 62-330 164-472 (611)
13 1s0u_A EIF-2-gamma, translatio 100.0 4.2E-39 1.4E-43 300.3 24.5 243 62-330 5-287 (408)
14 3sjy_A Translation initiation 100.0 2.3E-38 8E-43 294.8 25.5 254 61-330 4-281 (403)
15 1wb1_A Translation elongation 100.0 4.9E-40 1.7E-44 311.7 13.1 244 60-330 14-260 (482)
16 2elf_A Protein translation elo 100.0 9.8E-39 3.4E-43 292.9 19.0 224 67-330 23-253 (370)
17 3vqt_A RF-3, peptide chain rel 100.0 2.8E-36 9.6E-41 289.3 21.6 253 63-330 29-380 (548)
18 2ywe_A GTP-binding protein LEP 100.0 4.4E-35 1.5E-39 281.9 26.3 245 63-330 4-256 (600)
19 3cb4_D GTP-binding protein LEP 100.0 2.3E-34 8E-39 277.4 26.7 244 64-330 3-254 (599)
20 3tr5_A RF-3, peptide chain rel 100.0 4.8E-34 1.6E-38 272.5 22.9 248 64-330 12-362 (528)
21 4fn5_A EF-G 1, elongation fact 100.0 1.8E-33 6E-38 278.5 22.2 252 63-330 11-384 (709)
22 3j25_A Tetracycline resistance 100.0 6.3E-36 2.2E-40 292.4 1.6 249 65-330 2-311 (638)
23 2h5e_A Peptide chain release f 100.0 4.1E-33 1.4E-37 266.3 20.0 251 63-330 11-363 (529)
24 2rdo_7 EF-G, elongation factor 100.0 9.3E-32 3.2E-36 265.2 28.5 250 63-330 8-381 (704)
25 1dar_A EF-G, elongation factor 100.0 1.8E-31 6.1E-36 262.9 28.3 250 63-330 10-373 (691)
26 1g7s_A Translation initiation 100.0 7.4E-32 2.5E-36 260.3 19.9 235 64-327 4-303 (594)
27 2xex_A Elongation factor G; GT 100.0 4.3E-31 1.5E-35 260.3 25.0 250 63-330 8-373 (693)
28 1zo1_I IF2, translation initia 100.0 4.9E-33 1.7E-37 262.4 10.0 228 64-330 3-237 (501)
29 2dy1_A Elongation factor G; tr 100.0 4.2E-31 1.4E-35 259.4 23.6 247 63-330 7-346 (665)
30 3izy_P Translation initiation 100.0 1.1E-33 3.9E-38 268.8 4.7 231 65-330 4-238 (537)
31 1n0u_A EF-2, elongation factor 100.0 2.4E-28 8.3E-33 245.2 24.7 268 62-330 16-452 (842)
32 1wf3_A GTP-binding protein; GT 99.9 9.8E-22 3.3E-26 175.4 19.1 158 63-256 5-172 (301)
33 2efe_B Small GTP-binding prote 99.9 2.7E-22 9.2E-27 165.3 13.2 165 60-257 7-175 (181)
34 4dhe_A Probable GTP-binding pr 99.9 5.5E-22 1.9E-26 169.3 15.5 171 63-260 27-214 (223)
35 3iev_A GTP-binding protein ERA 99.9 1.1E-21 3.9E-26 175.8 18.1 164 61-257 6-182 (308)
36 2dyk_A GTP-binding protein; GT 99.9 2E-21 7E-26 156.8 14.5 153 66-256 2-161 (161)
37 2fg5_A RAB-22B, RAS-related pr 99.9 1.2E-21 4.1E-26 163.5 13.2 162 63-257 21-186 (192)
38 1ek0_A Protein (GTP-binding pr 99.9 7.9E-22 2.7E-26 160.5 11.2 163 64-256 2-168 (170)
39 1r2q_A RAS-related protein RAB 99.9 2.4E-21 8.2E-26 157.6 13.4 161 63-256 4-168 (170)
40 2lkc_A Translation initiation 99.9 3.3E-22 1.1E-26 164.3 7.9 160 63-255 6-169 (178)
41 2hxs_A RAB-26, RAS-related pro 99.9 3.9E-21 1.3E-25 157.9 14.0 162 63-256 4-172 (178)
42 1z0j_A RAB-22, RAS-related pro 99.9 2.9E-21 9.8E-26 157.2 12.9 161 63-256 4-168 (170)
43 4gzl_A RAS-related C3 botulinu 99.9 5.4E-21 1.8E-25 161.2 14.6 167 56-254 21-202 (204)
44 1z0f_A RAB14, member RAS oncog 99.9 3.5E-21 1.2E-25 158.1 13.1 161 62-255 12-176 (179)
45 3pqc_A Probable GTP-binding pr 99.9 2.3E-20 8E-25 155.4 18.2 159 64-256 22-193 (195)
46 1svi_A GTP-binding protein YSX 99.9 1.4E-20 4.7E-25 157.1 16.7 160 63-255 21-193 (195)
47 1mh1_A RAC1; GTP-binding, GTPa 99.9 6.3E-21 2.2E-25 157.6 14.4 166 63-258 3-181 (186)
48 1wms_A RAB-9, RAB9, RAS-relate 99.9 8.4E-21 2.9E-25 155.7 14.3 162 61-255 3-172 (177)
49 2il1_A RAB12; G-protein, GDP, 99.9 4.7E-21 1.6E-25 159.9 12.8 161 62-254 23-187 (192)
50 2y8e_A RAB-protein 6, GH09086P 99.9 4.2E-21 1.4E-25 157.6 12.0 160 62-256 11-176 (179)
51 1zd9_A ADP-ribosylation factor 99.9 1.3E-20 4.5E-25 156.6 15.1 161 62-256 19-184 (188)
52 1kao_A RAP2A; GTP-binding prot 99.8 7.7E-21 2.6E-25 154.0 13.2 157 64-254 2-163 (167)
53 3dz8_A RAS-related protein RAB 99.8 4.4E-21 1.5E-25 159.8 12.0 159 63-254 21-183 (191)
54 2g6b_A RAS-related protein RAB 99.8 5.4E-21 1.9E-25 157.3 12.4 162 63-256 8-173 (180)
55 3bc1_A RAS-related protein RAB 99.8 1.1E-20 3.7E-25 157.2 14.2 161 62-255 8-183 (195)
56 3i8s_A Ferrous iron transport 99.8 4.2E-21 1.4E-25 169.3 12.3 156 64-257 2-169 (274)
57 2oil_A CATX-8, RAS-related pro 99.8 3.5E-21 1.2E-25 160.6 11.2 161 61-254 21-185 (193)
58 2hjg_A GTP-binding protein ENG 99.8 2E-20 6.7E-25 175.6 17.3 148 64-231 174-333 (436)
59 3t1o_A Gliding protein MGLA; G 99.8 2.5E-21 8.5E-26 161.6 9.9 167 61-255 10-190 (198)
60 4bas_A ADP-ribosylation factor 99.8 6.7E-21 2.3E-25 159.4 12.4 162 60-255 12-187 (199)
61 2p5s_A RAS and EF-hand domain 99.8 2.9E-21 9.9E-26 162.1 10.1 164 62-255 25-195 (199)
62 1ega_A Protein (GTP-binding pr 99.8 1.4E-20 4.7E-25 168.1 15.0 160 64-257 7-175 (301)
63 1z08_A RAS-related protein RAB 99.8 6.3E-21 2.1E-25 155.3 11.6 160 63-255 4-167 (170)
64 1c1y_A RAS-related protein RAP 99.8 9E-21 3.1E-25 153.8 12.5 158 64-255 2-165 (167)
65 1zj6_A ADP-ribosylation factor 99.8 1.3E-20 4.5E-25 156.3 13.6 162 63-259 14-180 (187)
66 3tkl_A RAS-related protein RAB 99.8 1.5E-20 5.1E-25 156.9 13.9 158 63-255 14-177 (196)
67 2ew1_A RAS-related protein RAB 99.8 1.2E-20 4E-25 158.8 13.2 159 62-255 23-187 (201)
68 4dkx_A RAS-related protein RAB 99.8 5.8E-21 2E-25 162.3 11.3 161 63-256 11-175 (216)
69 1u8z_A RAS-related protein RAL 99.8 1.4E-20 4.9E-25 152.5 13.2 158 64-255 3-165 (168)
70 2gf9_A RAS-related protein RAB 99.8 4.2E-21 1.4E-25 159.6 10.1 160 63-255 20-183 (189)
71 2nzj_A GTP-binding protein REM 99.8 1.2E-20 4.1E-25 154.4 12.6 158 64-255 3-167 (175)
72 3kkq_A RAS-related protein M-R 99.8 6.2E-21 2.1E-25 157.5 10.6 160 61-254 14-179 (183)
73 1zbd_A Rabphilin-3A; G protein 99.8 9.9E-21 3.4E-25 159.1 12.0 145 64-231 7-155 (203)
74 4dcu_A GTP-binding protein ENG 99.8 1.1E-20 3.8E-25 178.4 13.5 149 63-231 193-353 (456)
75 2erx_A GTP-binding protein DI- 99.8 2.3E-20 7.9E-25 152.0 13.6 159 65-257 3-167 (172)
76 1r8s_A ADP-ribosylation factor 99.8 4.7E-20 1.6E-24 149.3 15.3 156 66-256 1-161 (164)
77 2a5j_A RAS-related protein RAB 99.8 5.1E-21 1.7E-25 159.5 9.8 160 62-254 18-181 (191)
78 2hup_A RAS-related protein RAB 99.8 1.8E-20 6.2E-25 157.6 13.2 161 63-255 27-191 (201)
79 1upt_A ARL1, ADP-ribosylation 99.8 1.7E-20 5.9E-25 152.8 12.6 158 64-256 6-168 (171)
80 1z2a_A RAS-related protein RAB 99.8 5.9E-21 2E-25 155.1 9.7 158 64-254 4-164 (168)
81 2wji_A Ferrous iron transport 99.8 1.5E-20 5.1E-25 153.0 12.1 154 64-255 2-163 (165)
82 2bme_A RAB4A, RAS-related prot 99.8 2.8E-20 9.6E-25 153.9 13.8 158 63-255 8-171 (186)
83 1z06_A RAS-related protein RAB 99.8 1.6E-20 5.4E-25 156.2 12.3 165 62-256 17-187 (189)
84 3iby_A Ferrous iron transport 99.8 8.1E-21 2.8E-25 165.6 10.8 151 66-254 2-164 (256)
85 2o52_A RAS-related protein RAB 99.8 9.2E-21 3.1E-25 159.2 10.5 160 62-254 22-185 (200)
86 2j1l_A RHO-related GTP-binding 99.8 5.8E-20 2E-24 156.0 15.6 161 63-255 32-207 (214)
87 2atx_A Small GTP binding prote 99.8 2.2E-20 7.4E-25 155.9 12.7 163 63-255 16-191 (194)
88 3tw8_B RAS-related protein RAB 99.8 1.3E-20 4.5E-25 154.9 11.2 158 63-255 7-169 (181)
89 3clv_A RAB5 protein, putative; 99.8 2.5E-20 8.6E-25 156.2 13.1 107 128-254 93-201 (208)
90 1ky3_A GTP-binding protein YPT 99.8 1.9E-20 6.4E-25 154.1 11.8 162 62-254 5-175 (182)
91 4dsu_A GTPase KRAS, isoform 2B 99.8 2.1E-20 7.3E-25 154.8 12.2 156 63-255 2-164 (189)
92 1fzq_A ADP-ribosylation factor 99.8 1.1E-19 3.9E-24 150.0 16.5 159 63-256 14-177 (181)
93 2fu5_C RAS-related protein RAB 99.8 5.6E-21 1.9E-25 157.8 8.5 160 63-255 6-169 (183)
94 2h57_A ADP-ribosylation factor 99.8 1.7E-20 5.7E-25 156.1 11.4 161 63-256 19-186 (190)
95 2h17_A ADP-ribosylation factor 99.8 3.2E-20 1.1E-24 153.2 13.0 158 62-254 18-180 (181)
96 1g16_A RAS-related protein SEC 99.8 8.7E-21 3E-25 154.4 9.3 157 65-255 3-163 (170)
97 1x3s_A RAS-related protein RAB 99.8 1.5E-20 5.3E-25 156.6 10.9 160 63-256 13-177 (195)
98 3llu_A RAS-related GTP-binding 99.8 9.3E-20 3.2E-24 152.5 15.6 166 61-254 16-194 (196)
99 2a9k_A RAS-related protein RAL 99.8 4.5E-20 1.5E-24 152.5 13.4 158 62-255 15-179 (187)
100 2f7s_A C25KG, RAS-related prot 99.8 1.4E-20 4.9E-25 159.9 10.6 159 63-254 23-196 (217)
101 3t5g_A GTP-binding protein RHE 99.8 9E-21 3.1E-25 156.3 9.0 160 63-256 4-168 (181)
102 2qu8_A Putative nucleolar GTP- 99.8 8.7E-20 3E-24 156.5 15.5 163 63-255 27-203 (228)
103 2ce2_X GTPase HRAS; signaling 99.8 4.1E-20 1.4E-24 149.4 12.7 157 64-255 2-163 (166)
104 2bov_A RAla, RAS-related prote 99.8 5.1E-20 1.7E-24 154.9 13.5 160 62-255 11-175 (206)
105 1ksh_A ARF-like protein 2; sma 99.8 4.2E-20 1.4E-24 153.0 12.7 159 63-256 16-179 (186)
106 2gco_A H9, RHO-related GTP-bin 99.8 6.3E-20 2.2E-24 154.2 13.9 162 63-254 23-197 (201)
107 1vg8_A RAS-related protein RAB 99.8 1.8E-20 6E-25 157.9 10.5 160 62-254 5-172 (207)
108 3q72_A GTP-binding protein RAD 99.8 3.6E-20 1.2E-24 150.3 11.9 155 65-254 2-161 (166)
109 2fv8_A H6, RHO-related GTP-bin 99.8 6E-20 2E-24 155.0 13.6 164 63-256 23-199 (207)
110 3reg_A RHO-like small GTPase; 99.8 1.4E-20 4.7E-25 157.2 9.5 164 61-255 19-186 (194)
111 2fn4_A P23, RAS-related protei 99.8 1.3E-20 4.3E-25 155.0 8.9 159 63-255 7-170 (181)
112 2gf0_A GTP-binding protein DI- 99.8 6E-20 2.1E-24 153.6 13.2 161 62-257 5-171 (199)
113 3a1s_A Iron(II) transport prot 99.8 4.5E-20 1.5E-24 161.2 12.6 155 63-255 3-165 (258)
114 3bwd_D RAC-like GTP-binding pr 99.8 1.4E-20 4.6E-25 155.2 8.8 164 63-256 6-180 (182)
115 2b6h_A ADP-ribosylation factor 99.8 9.9E-20 3.4E-24 151.9 14.1 160 62-256 26-190 (192)
116 3oes_A GTPase rhebl1; small GT 99.8 8.8E-21 3E-25 159.4 7.7 160 63-256 22-186 (201)
117 2bcg_Y Protein YP2, GTP-bindin 99.8 2.2E-20 7.5E-25 157.4 10.0 159 63-254 6-168 (206)
118 3con_A GTPase NRAS; structural 99.8 7E-20 2.4E-24 152.2 13.0 157 62-255 18-181 (190)
119 3q85_A GTP-binding protein REM 99.8 5E-20 1.7E-24 149.9 11.8 157 65-254 2-164 (169)
120 1m2o_B GTP-binding protein SAR 99.8 8.4E-20 2.9E-24 152.1 13.3 157 63-254 21-189 (190)
121 2j0v_A RAC-like GTP-binding pr 99.8 2.8E-20 9.7E-25 157.5 10.5 165 63-257 7-180 (212)
122 2fh5_B SR-beta, signal recogni 99.8 1.7E-19 5.7E-24 152.9 15.2 170 62-254 4-213 (214)
123 1mky_A Probable GTP-binding pr 99.8 2.1E-19 7.1E-24 168.8 17.0 154 66-256 2-165 (439)
124 3cph_A RAS-related protein SEC 99.8 2.6E-20 8.9E-25 157.6 9.5 143 63-231 18-166 (213)
125 3k53_A Ferrous iron transport 99.8 6.1E-20 2.1E-24 161.7 11.9 154 64-255 2-164 (271)
126 3cpj_B GTP-binding protein YPT 99.8 2.6E-20 8.9E-25 159.2 8.9 161 63-256 11-175 (223)
127 3q3j_B RHO-related GTP-binding 99.8 1E-19 3.5E-24 154.6 12.4 165 62-256 24-202 (214)
128 2q3h_A RAS homolog gene family 99.8 2.2E-19 7.6E-24 150.6 14.0 162 62-255 17-193 (201)
129 2yc2_C IFT27, small RAB-relate 99.8 3E-20 1E-24 156.5 8.6 146 63-231 18-176 (208)
130 2wjg_A FEOB, ferrous iron tran 99.8 6.8E-20 2.3E-24 151.9 10.6 157 63-257 5-169 (188)
131 1m7b_A RND3/RHOE small GTP-bin 99.8 2.6E-19 8.9E-24 148.1 14.1 162 63-254 5-180 (184)
132 1moz_A ARL1, ADP-ribosylation 99.8 6.1E-20 2.1E-24 151.5 10.3 158 63-255 16-178 (183)
133 4djt_A GTP-binding nuclear pro 99.8 1.2E-20 4.1E-25 160.5 6.0 162 61-255 7-173 (218)
134 3r7w_A Gtpase1, GTP-binding pr 99.8 1.7E-18 6E-23 155.0 20.4 148 65-230 3-165 (307)
135 1f6b_A SAR1; gtpases, N-termin 99.8 1.2E-19 4.1E-24 152.2 12.0 158 63-255 23-197 (198)
136 2hjg_A GTP-binding protein ENG 99.8 5.4E-20 1.9E-24 172.6 10.8 153 66-256 4-164 (436)
137 3c5c_A RAS-like protein 12; GD 99.8 1E-19 3.5E-24 151.1 11.2 161 60-255 16-184 (187)
138 3gj0_A GTP-binding nuclear pro 99.8 1.6E-20 5.4E-25 160.2 6.3 160 61-255 11-173 (221)
139 3ihw_A Centg3; RAS, centaurin, 99.8 1.4E-19 4.8E-24 150.0 11.3 157 61-254 16-177 (184)
140 2gj8_A MNME, tRNA modification 99.8 1E-19 3.6E-24 149.1 10.2 152 64-256 3-165 (172)
141 3b1v_A Ferrous iron uptake tra 99.8 8.2E-20 2.8E-24 160.5 10.0 153 65-256 3-163 (272)
142 2x77_A ADP-ribosylation factor 99.8 1E-19 3.5E-24 151.1 9.6 159 63-256 20-183 (189)
143 1mky_A Probable GTP-binding pr 99.8 8.2E-19 2.8E-23 164.8 16.8 148 64-231 179-339 (439)
144 3qq5_A Small GTP-binding prote 99.8 1.9E-20 6.5E-25 173.7 5.5 158 63-258 32-197 (423)
145 3gee_A MNME, tRNA modification 99.8 1.7E-19 6E-24 170.0 11.8 154 64-256 232-397 (476)
146 1gwn_A RHO-related GTP-binding 99.8 6.8E-19 2.3E-23 148.5 13.9 162 63-254 26-201 (205)
147 3cbq_A GTP-binding protein REM 99.8 3.8E-19 1.3E-23 148.8 11.9 162 62-256 20-187 (195)
148 2atv_A RERG, RAS-like estrogen 99.8 3.9E-19 1.4E-23 148.6 11.8 158 63-255 26-189 (196)
149 3t5d_A Septin-7; GTP-binding p 99.8 1.3E-18 4.6E-23 153.3 15.4 167 64-256 7-203 (274)
150 2xtp_A GTPase IMAP family memb 99.8 5.9E-19 2E-23 154.3 12.7 167 62-256 19-207 (260)
151 4dcu_A GTP-binding protein ENG 99.8 3E-19 1E-23 168.5 11.6 156 63-256 21-184 (456)
152 3o47_A ADP-ribosylation factor 99.8 6.8E-19 2.3E-23 159.1 13.0 159 63-256 163-326 (329)
153 3lxw_A GTPase IMAP family memb 99.8 8.1E-19 2.8E-23 152.3 11.6 167 63-256 19-207 (247)
154 3th5_A RAS-related C3 botulinu 99.6 1.3E-20 4.4E-25 158.7 0.0 162 62-253 27-201 (204)
155 3l0i_B RAS-related protein RAB 99.8 1.2E-20 4E-25 158.4 -0.8 161 63-256 31-195 (199)
156 2cxx_A Probable GTP-binding pr 99.8 5E-18 1.7E-22 140.7 14.8 154 66-256 2-183 (190)
157 2zej_A Dardarin, leucine-rich 99.8 1.4E-18 4.7E-23 143.8 11.0 169 65-256 2-177 (184)
158 2iwr_A Centaurin gamma 1; ANK 99.8 1.6E-18 5.6E-23 142.2 11.0 155 63-254 5-166 (178)
159 1xzp_A Probable tRNA modificat 99.8 1.3E-18 4.3E-23 164.2 11.2 152 65-255 243-403 (482)
160 3lvq_E ARF-GAP with SH3 domain 99.8 4.1E-18 1.4E-22 162.6 14.4 159 63-256 320-483 (497)
161 2g3y_A GTP-binding protein GEM 99.8 4.1E-18 1.4E-22 144.2 12.4 161 63-255 35-201 (211)
162 2wkq_A NPH1-1, RAS-related C3 99.8 6.6E-18 2.3E-22 152.5 13.8 162 63-256 153-329 (332)
163 3geh_A MNME, tRNA modification 99.7 3E-18 1E-22 160.9 9.3 154 64-257 223-384 (462)
164 3lxx_A GTPase IMAP family memb 99.7 1.2E-17 4.2E-22 144.1 12.3 168 62-255 26-212 (239)
165 1lnz_A SPO0B-associated GTP-bi 99.7 2.7E-18 9.3E-23 155.3 6.3 154 66-256 159-329 (342)
166 2cjw_A GTP-binding protein GEM 99.7 2.1E-17 7.2E-22 137.8 10.8 161 63-255 4-170 (192)
167 1nrj_B SR-beta, signal recogni 99.7 2E-17 6.8E-22 140.5 10.1 144 63-232 10-169 (218)
168 2e87_A Hypothetical protein PH 99.7 1.8E-16 6.1E-21 144.9 15.7 156 63-255 165-334 (357)
169 2qtf_A Protein HFLX, GTP-bindi 99.7 1.8E-16 6.3E-21 144.6 15.2 159 66-256 180-353 (364)
170 3dpu_A RAB family protein; roc 99.7 1E-17 3.5E-22 161.2 6.6 160 62-256 38-207 (535)
171 3r7w_B Gtpase2, GTP-binding pr 99.7 1.2E-16 4.1E-21 142.3 12.4 146 67-230 1-158 (331)
172 1pui_A ENGB, probable GTP-bind 99.7 8.1E-16 2.8E-20 129.6 16.4 161 64-256 25-198 (210)
173 2f9l_A RAB11B, member RAS onco 99.7 9.7E-17 3.3E-21 134.4 10.6 144 65-231 5-152 (199)
174 2j69_A Bacterial dynamin-like 99.7 9.7E-17 3.3E-21 158.2 12.2 68 128-196 174-245 (695)
175 1h65_A Chloroplast outer envel 99.7 2.9E-15 9.8E-20 131.6 19.7 180 63-258 37-246 (270)
176 2aka_B Dynamin-1; fusion prote 99.7 1.5E-16 5E-21 141.8 11.5 97 127-231 124-237 (299)
177 3def_A T7I23.11 protein; chlor 99.7 5.1E-16 1.7E-20 135.8 13.2 118 62-195 33-165 (262)
178 1jwy_B Dynamin A GTPase domain 99.7 8.6E-17 2.9E-21 144.4 8.1 118 126-256 129-261 (315)
179 3p32_A Probable GTPase RV1496/ 99.7 1.6E-16 5.5E-21 145.0 8.3 175 62-255 76-282 (355)
180 2qag_A Septin-2, protein NEDD5 99.6 3.2E-16 1.1E-20 143.2 9.7 174 63-258 35-238 (361)
181 3c5h_A Glucocorticoid receptor 99.6 4.7E-16 1.6E-20 135.5 10.1 84 151-254 162-252 (255)
182 1oix_A RAS-related protein RAB 99.6 5.9E-16 2E-20 128.8 9.9 157 63-254 27-189 (191)
183 2p67_A LAO/AO transport system 99.6 2.7E-15 9.3E-20 136.1 13.5 173 63-254 54-258 (341)
184 2ged_A SR-beta, signal recogni 99.6 1.5E-15 5.2E-20 126.1 8.1 113 63-196 46-171 (193)
185 1wxq_A GTP-binding protein; st 99.6 2.8E-15 9.7E-20 138.3 9.9 83 66-164 1-114 (397)
186 2www_A Methylmalonic aciduria 99.6 1.7E-14 5.7E-19 131.2 14.0 172 64-254 73-276 (349)
187 2qpt_A EH domain-containing pr 99.6 2.1E-14 7.1E-19 137.9 12.8 72 128-200 154-237 (550)
188 2wsm_A Hydrogenase expression/ 99.5 5.1E-15 1.7E-19 125.8 6.8 168 63-256 28-213 (221)
189 2x2e_A Dynamin-1; nitration, h 99.5 6.4E-15 2.2E-19 134.3 7.6 97 127-231 129-242 (353)
190 1yrb_A ATP(GTP)binding protein 99.5 1E-13 3.5E-18 120.9 12.0 176 63-256 12-256 (262)
191 1udx_A The GTP-binding protein 99.5 1.7E-13 5.8E-18 126.7 12.9 153 67-256 159-324 (416)
192 3t34_A Dynamin-related protein 99.5 2.9E-14 1E-18 130.4 6.4 96 127-231 135-245 (360)
193 3zvr_A Dynamin-1; hydrolase, D 99.5 4.8E-14 1.7E-18 138.4 7.7 163 63-231 49-262 (772)
194 2qag_C Septin-7; cell cycle, c 99.4 5.6E-13 1.9E-17 123.3 12.7 152 63-231 29-211 (418)
195 2qm8_A GTPase/ATPase; G protei 99.4 1E-12 3.4E-17 118.8 12.2 160 64-231 54-245 (337)
196 2qnr_A Septin-2, protein NEDD5 99.4 1.2E-12 4.2E-17 116.4 12.6 151 64-231 17-199 (301)
197 1cip_A Protein (guanine nucleo 99.4 8.4E-13 2.9E-17 119.7 11.1 129 115-254 180-341 (353)
198 4a9a_A Ribosome-interacting GT 99.4 1E-12 3.5E-17 119.6 7.9 114 63-194 70-195 (376)
199 1zcb_A G alpha I/13; GTP-bindi 99.3 4E-12 1.4E-16 115.6 11.5 123 121-254 194-350 (362)
200 1jal_A YCHF protein; nucleotid 99.3 3.8E-12 1.3E-16 115.2 9.9 82 66-163 3-108 (363)
201 3ohm_A Guanine nucleotide-bind 99.3 3.4E-11 1.2E-15 107.6 14.1 129 115-254 154-315 (327)
202 4fid_A G protein alpha subunit 99.3 5.5E-11 1.9E-15 106.7 14.3 80 115-195 148-242 (340)
203 2j37_W Signal recognition part 99.3 2E-11 6.9E-16 115.3 11.5 131 63-196 99-255 (504)
204 2dby_A GTP-binding protein; GD 99.3 1.7E-11 5.9E-16 111.5 10.2 84 66-163 2-111 (368)
205 2hf9_A Probable hydrogenase ni 99.2 3.2E-11 1.1E-15 102.5 9.8 167 63-254 36-221 (226)
206 2xtz_A Guanine nucleotide-bind 99.2 1.3E-10 4.5E-15 105.2 12.2 69 126-195 181-264 (354)
207 3e1y_E Eukaryotic peptide chai 99.2 2.1E-11 7.1E-16 102.0 6.0 64 261-330 2-65 (204)
208 2qag_B Septin-6, protein NEDD5 99.2 2.4E-10 8.3E-15 105.3 12.4 136 65-215 42-209 (427)
209 3sop_A Neuronal-specific septi 99.1 3.7E-10 1.3E-14 98.7 12.3 143 65-216 2-174 (270)
210 1tq4_A IIGP1, interferon-induc 99.0 7.7E-09 2.6E-13 95.3 17.0 167 65-258 69-254 (413)
211 3ec1_A YQEH GTPase; atnos1, at 99.0 2.1E-11 7.2E-16 111.5 -2.1 117 66-196 163-289 (369)
212 3h2y_A GTPase family protein; 99.0 7.5E-11 2.6E-15 107.7 0.7 119 66-197 161-289 (368)
213 3dm5_A SRP54, signal recogniti 98.9 2.7E-08 9.3E-13 92.1 16.9 150 64-228 99-274 (443)
214 2ohf_A Protein OLA1, GTP-bindi 98.9 1.6E-09 5.4E-14 99.1 7.2 85 63-163 20-128 (396)
215 3kl4_A SRP54, signal recogniti 98.8 6.9E-08 2.3E-12 89.4 15.5 130 64-196 96-253 (433)
216 1u0l_A Probable GTPase ENGC; p 98.8 4.7E-09 1.6E-13 93.2 7.4 92 129-231 64-157 (301)
217 2v3c_C SRP54, signal recogniti 98.8 3E-08 1E-12 92.2 12.2 129 65-196 99-253 (432)
218 1j8m_F SRP54, signal recogniti 98.8 1.1E-07 3.9E-12 84.0 14.4 148 65-227 98-273 (297)
219 1azs_C GS-alpha; complex (lyas 98.7 6.7E-08 2.3E-12 88.6 11.1 75 120-195 209-298 (402)
220 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 4.6E-08 1.6E-12 89.5 7.1 85 63-163 18-127 (392)
221 2xxa_A Signal recognition part 98.6 2.6E-07 9E-12 85.8 10.9 128 64-195 99-254 (433)
222 1xe1_A Hypothetical protein PF 98.5 1.1E-06 3.7E-11 64.9 10.7 62 262-330 31-92 (116)
223 1puj_A YLQF, conserved hypothe 98.5 3.5E-07 1.2E-11 80.3 9.6 87 132-231 3-90 (282)
224 1f5n_A Interferon-induced guan 98.4 1.1E-07 3.7E-12 91.3 4.7 102 62-176 35-145 (592)
225 3ec1_A YQEH GTPase; atnos1, at 98.4 3.9E-07 1.3E-11 83.1 8.1 108 130-253 51-158 (369)
226 3e70_C DPA, signal recognition 98.4 5.2E-06 1.8E-10 74.2 14.9 148 64-227 128-302 (328)
227 2yv5_A YJEQ protein; hydrolase 98.4 1.3E-06 4.3E-11 77.5 10.1 77 147-231 75-153 (302)
228 2yhs_A FTSY, cell division pro 98.4 1.3E-06 4.5E-11 81.7 10.5 127 65-195 293-452 (503)
229 1puj_A YLQF, conserved hypothe 98.4 2.7E-07 9.2E-12 81.0 5.4 59 63-139 118-176 (282)
230 3h2y_A GTPase family protein; 98.4 7.5E-07 2.6E-11 81.2 7.7 100 137-253 55-156 (368)
231 4dzz_A Plasmid partitioning pr 98.3 4.2E-06 1.4E-10 69.4 11.7 125 67-195 3-144 (206)
232 1vma_A Cell division protein F 98.3 3.2E-06 1.1E-10 74.9 11.4 148 65-228 104-284 (306)
233 1zu4_A FTSY; GTPase, signal re 98.3 1.6E-06 5.3E-11 77.5 9.0 126 65-195 105-268 (320)
234 3l82_B F-box only protein 4; T 98.3 1.3E-06 4.5E-11 72.1 7.5 111 129-256 97-222 (227)
235 3cnl_A YLQF, putative uncharac 98.2 1.8E-06 6.3E-11 74.8 5.8 93 136-254 5-98 (262)
236 2ffh_A Protein (FFH); SRP54, s 98.2 8.9E-06 3E-10 75.1 10.4 127 65-195 98-251 (425)
237 1rj9_A FTSY, signal recognitio 98.2 1.1E-05 3.8E-10 71.4 10.5 127 65-195 102-261 (304)
238 2px0_A Flagellar biosynthesis 98.1 2.1E-06 7.2E-11 75.8 5.6 129 65-196 105-254 (296)
239 3szr_A Interferon-induced GTP- 98.1 7.4E-06 2.5E-10 79.5 9.4 24 66-89 46-69 (608)
240 3cnl_A YLQF, putative uncharac 98.1 1.4E-06 4.9E-11 75.5 3.3 57 66-140 100-156 (262)
241 1ls1_A Signal recognition part 98.1 5.4E-05 1.8E-09 66.7 13.0 127 65-195 98-251 (295)
242 3kjh_A CO dehydrogenase/acetyl 98.0 6.6E-06 2.3E-10 70.4 5.7 65 126-192 130-194 (254)
243 3l2o_B F-box only protein 4; s 98.0 1.8E-05 6.2E-10 68.6 7.6 104 136-256 195-307 (312)
244 3cwq_A Para family chromosome 97.9 6.5E-05 2.2E-09 62.7 10.7 123 67-195 2-134 (209)
245 2ph1_A Nucleotide-binding prot 97.9 0.00022 7.4E-09 61.6 13.9 68 126-193 127-194 (262)
246 3b9q_A Chloroplast SRP recepto 97.9 9.3E-05 3.2E-09 65.4 11.1 126 66-195 101-260 (302)
247 3q5d_A Atlastin-1; G protein, 97.9 4E-05 1.4E-09 71.1 9.1 28 62-89 64-91 (447)
248 2og2_A Putative signal recogni 97.8 0.00012 4E-09 66.2 10.4 127 65-195 157-317 (359)
249 3la6_A Tyrosine-protein kinase 97.8 5.6E-05 1.9E-09 66.3 7.8 67 128-195 202-268 (286)
250 1hyq_A MIND, cell division inh 97.8 0.00014 4.8E-09 62.6 10.4 67 127-195 110-176 (263)
251 1t9h_A YLOQ, probable GTPase E 97.7 3.5E-05 1.2E-09 68.1 5.7 78 148-232 83-162 (307)
252 3bfv_A CAPA1, CAPB2, membrane 97.7 8.5E-05 2.9E-09 64.6 7.7 67 128-195 192-258 (271)
253 3cio_A ETK, tyrosine-protein k 97.7 0.00012 4.1E-09 64.6 8.7 67 128-195 214-280 (299)
254 2oze_A ORF delta'; para, walke 97.6 0.00085 2.9E-08 58.9 13.6 67 127-195 154-226 (298)
255 1g3q_A MIND ATPase, cell divis 97.6 0.00028 9.6E-09 59.6 9.7 67 127-195 111-177 (237)
256 3end_A Light-independent proto 97.5 0.00019 6.6E-09 63.4 7.1 66 127-193 156-225 (307)
257 3k9g_A PF-32 protein; ssgcid, 97.4 0.00076 2.6E-08 58.1 9.7 64 127-193 144-209 (267)
258 3q9l_A Septum site-determining 97.4 0.00066 2.3E-08 58.1 9.2 65 127-193 113-185 (260)
259 2crv_A IF-2MT, translation ini 97.4 0.00024 8.3E-09 52.7 5.1 63 267-330 12-77 (120)
260 2rcn_A Probable GTPase ENGC; Y 97.4 0.0012 4.1E-08 59.5 10.7 75 148-231 127-203 (358)
261 1d1n_A Initiation factor 2; be 97.3 7.3E-05 2.5E-09 53.5 2.1 63 267-330 8-70 (99)
262 3ug7_A Arsenical pump-driving 97.3 0.0087 3E-07 53.8 16.0 64 152-215 237-305 (349)
263 2afh_E Nitrogenase iron protei 97.3 0.00059 2E-08 59.7 7.8 67 127-193 118-189 (289)
264 1cp2_A CP2, nitrogenase iron p 97.3 0.00037 1.3E-08 60.1 6.3 68 127-194 115-187 (269)
265 1wcv_1 SOJ, segregation protei 97.3 0.0017 6E-08 55.6 10.4 68 126-195 110-183 (257)
266 3ea0_A ATPase, para family; al 97.3 0.00035 1.2E-08 59.3 5.9 67 127-195 118-186 (245)
267 3zq6_A Putative arsenical pump 97.2 0.015 5E-07 51.7 16.0 42 153-194 223-264 (324)
268 2xj4_A MIPZ; replication, cell 97.1 0.0018 6.2E-08 56.5 9.2 35 127-163 103-137 (286)
269 1zo1_I IF2, translation initia 97.1 0.0019 6.6E-08 60.8 9.1 84 245-330 389-472 (501)
270 1bif_A 6-phosphofructo-2-kinas 97.0 0.00038 1.3E-08 65.4 4.1 104 64-182 38-151 (469)
271 1t9h_A YLOQ, probable GTPase E 96.8 0.0002 6.8E-09 63.3 0.3 23 66-88 174-196 (307)
272 1ihu_A Arsenical pump-driving 96.8 0.011 3.8E-07 57.0 12.6 43 153-195 199-241 (589)
273 1ye8_A Protein THEP1, hypothet 96.8 0.00085 2.9E-08 54.3 3.7 23 67-89 2-24 (178)
274 1lvg_A Guanylate kinase, GMP k 96.7 0.00082 2.8E-08 55.3 2.8 24 66-89 5-28 (198)
275 2woj_A ATPase GET3; tail-ancho 96.6 0.032 1.1E-06 50.2 13.4 42 151-192 234-275 (354)
276 1kgd_A CASK, peripheral plasma 96.6 0.001 3.6E-08 53.7 3.2 23 67-89 7-29 (180)
277 4ido_A Atlastin-1; GTPase, GTP 96.6 0.0071 2.4E-07 55.9 8.9 28 62-89 64-91 (457)
278 2woo_A ATPase GET3; tail-ancho 96.6 0.26 8.9E-06 43.6 18.7 41 153-193 222-262 (329)
279 3io3_A DEHA2D07832P; chaperone 96.5 0.05 1.7E-06 48.8 13.8 42 153-194 232-273 (348)
280 3c8u_A Fructokinase; YP_612366 96.5 0.002 7E-08 53.3 4.4 29 64-92 21-49 (208)
281 1byi_A Dethiobiotin synthase; 96.5 0.032 1.1E-06 46.3 11.9 68 127-194 108-180 (224)
282 3iqw_A Tail-anchored protein t 96.5 0.37 1.3E-05 42.8 19.3 41 153-193 223-263 (334)
283 2b8t_A Thymidine kinase; deoxy 96.5 0.011 3.8E-07 49.5 8.5 32 66-97 13-44 (223)
284 1znw_A Guanylate kinase, GMP k 96.5 0.0016 5.3E-08 54.0 3.2 23 67-89 22-44 (207)
285 3a00_A Guanylate kinase, GMP k 96.4 0.0016 5.6E-08 52.8 3.2 24 67-90 3-26 (186)
286 3tr0_A Guanylate kinase, GMP k 96.4 0.0017 5.8E-08 53.3 3.3 22 67-88 9-30 (205)
287 1ihu_A Arsenical pump-driving 96.4 0.035 1.2E-06 53.5 12.8 44 151-194 489-532 (589)
288 2zr9_A Protein RECA, recombina 96.4 0.023 8E-07 50.9 10.8 27 67-93 63-89 (349)
289 1z6g_A Guanylate kinase; struc 96.3 0.0019 6.6E-08 53.9 3.2 23 67-89 25-47 (218)
290 1htw_A HI0065; nucleotide-bind 96.3 0.0023 7.9E-08 50.7 3.3 24 66-89 34-57 (158)
291 3izy_P Translation initiation 96.3 0.0074 2.5E-07 57.4 7.2 85 244-330 427-514 (537)
292 1s96_A Guanylate kinase, GMP k 96.3 0.0022 7.7E-08 53.7 3.3 24 66-89 17-40 (219)
293 3ney_A 55 kDa erythrocyte memb 96.3 0.0029 9.8E-08 52.0 3.8 23 66-88 20-42 (197)
294 1np6_A Molybdopterin-guanine d 96.3 0.0043 1.5E-07 49.9 4.7 28 66-93 7-34 (174)
295 3hr8_A Protein RECA; alpha and 96.3 0.025 8.6E-07 50.8 10.2 27 66-92 62-88 (356)
296 1xp8_A RECA protein, recombina 96.2 0.032 1.1E-06 50.4 10.8 28 67-94 76-103 (366)
297 3asz_A Uridine kinase; cytidin 96.2 0.0031 1E-07 52.1 3.7 24 66-89 7-30 (211)
298 1zp6_A Hypothetical protein AT 96.2 0.0028 9.5E-08 51.4 3.2 23 66-88 10-32 (191)
299 1g7s_A Translation initiation 96.2 0.027 9.3E-07 54.2 10.6 63 263-330 461-525 (594)
300 4gp7_A Metallophosphoesterase; 96.1 0.0027 9.3E-08 50.8 2.9 20 67-86 11-30 (171)
301 1xjc_A MOBB protein homolog; s 96.1 0.0055 1.9E-07 49.0 4.7 29 66-94 5-33 (169)
302 2i3b_A HCR-ntpase, human cance 96.1 0.0038 1.3E-07 51.0 3.7 27 67-93 3-29 (189)
303 3tif_A Uncharacterized ABC tra 96.1 0.0025 8.5E-08 54.0 2.6 22 67-88 33-54 (235)
304 3b85_A Phosphate starvation-in 96.1 0.0039 1.3E-07 51.7 3.8 28 67-94 24-51 (208)
305 3tau_A Guanylate kinase, GMP k 96.1 0.0037 1.3E-07 51.7 3.6 23 66-88 9-31 (208)
306 3uie_A Adenylyl-sulfate kinase 96.1 0.0058 2E-07 50.1 4.7 30 65-94 25-54 (200)
307 2j41_A Guanylate kinase; GMP, 96.0 0.004 1.4E-07 51.1 3.6 24 66-89 7-30 (207)
308 2f1r_A Molybdopterin-guanine d 96.0 0.0023 8E-08 51.3 2.1 27 67-93 4-30 (171)
309 2eyu_A Twitching motility prot 96.0 0.0047 1.6E-07 53.2 4.1 26 66-91 26-51 (261)
310 3qxc_A Dethiobiotin synthetase 96.0 0.088 3E-06 44.5 11.9 68 127-195 131-203 (242)
311 2pcj_A ABC transporter, lipopr 96.0 0.0029 1E-07 53.1 2.6 22 67-88 32-53 (224)
312 2onk_A Molybdate/tungstate ABC 96.0 0.0036 1.2E-07 53.2 3.1 22 67-88 26-47 (240)
313 2rcn_A Probable GTPase ENGC; Y 96.0 0.0036 1.2E-07 56.3 3.3 21 67-87 217-237 (358)
314 2v9p_A Replication protein E1; 96.0 0.0046 1.6E-07 54.4 3.8 24 66-89 127-150 (305)
315 1u94_A RECA protein, recombina 95.9 0.048 1.7E-06 49.0 10.5 28 66-93 64-91 (356)
316 1knq_A Gluconate kinase; ALFA/ 95.9 0.0059 2E-07 48.7 4.0 23 66-88 9-31 (175)
317 1kag_A SKI, shikimate kinase I 95.9 0.0044 1.5E-07 49.3 3.3 22 67-88 6-27 (173)
318 2bdt_A BH3686; alpha-beta prot 95.9 0.0044 1.5E-07 50.3 3.2 21 67-87 4-24 (189)
319 4eun_A Thermoresistant glucoki 95.9 0.0054 1.8E-07 50.3 3.8 24 66-89 30-53 (200)
320 2cbz_A Multidrug resistance-as 95.9 0.0035 1.2E-07 53.1 2.6 21 67-87 33-53 (237)
321 1sgw_A Putative ABC transporte 95.8 0.0035 1.2E-07 52.3 2.4 22 67-88 37-58 (214)
322 2chg_A Replication factor C sm 95.8 0.058 2E-06 44.0 10.0 24 67-90 40-63 (226)
323 3io5_A Recombination and repai 95.8 0.087 3E-06 46.4 11.3 26 67-92 30-55 (333)
324 1ex7_A Guanylate kinase; subst 95.8 0.0053 1.8E-07 49.9 3.4 21 68-88 4-24 (186)
325 2pze_A Cystic fibrosis transme 95.8 0.0038 1.3E-07 52.6 2.6 22 67-88 36-57 (229)
326 1mv5_A LMRA, multidrug resista 95.8 0.0038 1.3E-07 53.1 2.6 22 67-88 30-51 (243)
327 3gfo_A Cobalt import ATP-bindi 95.8 0.0038 1.3E-07 54.2 2.6 22 67-88 36-57 (275)
328 2yv5_A YJEQ protein; hydrolase 95.8 0.0048 1.6E-07 54.3 3.3 21 66-86 166-186 (302)
329 1g6h_A High-affinity branched- 95.8 0.0038 1.3E-07 53.6 2.6 22 67-88 35-56 (257)
330 2d2e_A SUFC protein; ABC-ATPas 95.8 0.0047 1.6E-07 52.8 3.2 22 67-88 31-52 (250)
331 2qor_A Guanylate kinase; phosp 95.8 0.0053 1.8E-07 50.5 3.4 24 66-89 13-36 (204)
332 2ff7_A Alpha-hemolysin translo 95.8 0.0039 1.3E-07 53.2 2.6 22 67-88 37-58 (247)
333 4g1u_C Hemin import ATP-bindin 95.8 0.0037 1.3E-07 53.9 2.5 22 67-88 39-60 (266)
334 1jbk_A CLPB protein; beta barr 95.8 0.069 2.4E-06 42.4 10.1 27 65-91 43-69 (195)
335 3kb2_A SPBC2 prophage-derived 95.8 0.0062 2.1E-07 48.3 3.7 22 67-88 3-24 (173)
336 1b0u_A Histidine permease; ABC 95.8 0.0039 1.3E-07 53.7 2.6 22 67-88 34-55 (262)
337 2yvu_A Probable adenylyl-sulfa 95.8 0.0095 3.2E-07 48.1 4.8 30 64-93 12-41 (186)
338 3aez_A Pantothenate kinase; tr 95.8 0.0063 2.2E-07 53.8 3.9 29 63-91 88-116 (312)
339 3lw7_A Adenylate kinase relate 95.8 0.0053 1.8E-07 48.7 3.1 20 66-85 2-21 (179)
340 2zu0_C Probable ATP-dependent 95.8 0.0051 1.7E-07 53.1 3.1 22 67-88 48-69 (267)
341 1ji0_A ABC transporter; ATP bi 95.8 0.0043 1.5E-07 52.7 2.6 22 67-88 34-55 (240)
342 2olj_A Amino acid ABC transpor 95.7 0.0043 1.5E-07 53.4 2.6 22 67-88 52-73 (263)
343 2ghi_A Transport protein; mult 95.7 0.0044 1.5E-07 53.3 2.6 23 67-89 48-70 (260)
344 4a1f_A DNAB helicase, replicat 95.7 0.064 2.2E-06 47.8 10.2 31 67-97 48-78 (338)
345 2bbw_A Adenylate kinase 4, AK4 95.7 0.0058 2E-07 51.9 3.3 22 66-87 28-49 (246)
346 1vpl_A ABC transporter, ATP-bi 95.7 0.0046 1.6E-07 53.1 2.6 22 67-88 43-64 (256)
347 2qi9_C Vitamin B12 import ATP- 95.7 0.0046 1.6E-07 52.8 2.6 23 67-89 28-50 (249)
348 1kht_A Adenylate kinase; phosp 95.7 0.0081 2.8E-07 48.4 4.0 26 66-91 4-29 (192)
349 2if2_A Dephospho-COA kinase; a 95.7 0.0063 2.1E-07 49.9 3.3 21 67-87 3-23 (204)
350 1cke_A CK, MSSA, protein (cyti 95.7 0.0074 2.5E-07 50.3 3.8 23 66-88 6-28 (227)
351 2kjq_A DNAA-related protein; s 95.7 0.0071 2.4E-07 47.2 3.4 26 66-91 37-62 (149)
352 3jvv_A Twitching mobility prot 95.7 0.01 3.5E-07 53.4 4.9 26 67-92 125-150 (356)
353 1rz3_A Hypothetical protein rb 95.7 0.0098 3.4E-07 48.8 4.4 28 65-92 22-49 (201)
354 2ihy_A ABC transporter, ATP-bi 95.6 0.0049 1.7E-07 53.6 2.6 22 67-88 49-70 (279)
355 2ixe_A Antigen peptide transpo 95.6 0.0049 1.7E-07 53.3 2.6 22 67-88 47-68 (271)
356 1nks_A Adenylate kinase; therm 95.6 0.0094 3.2E-07 48.1 4.2 25 67-91 3-27 (194)
357 2jeo_A Uridine-cytidine kinase 95.6 0.008 2.7E-07 51.0 3.8 24 66-89 26-49 (245)
358 3ec2_A DNA replication protein 95.6 0.0079 2.7E-07 48.3 3.6 26 65-90 38-63 (180)
359 3lnc_A Guanylate kinase, GMP k 95.6 0.0045 1.5E-07 52.0 2.1 23 67-89 29-52 (231)
360 2yz2_A Putative ABC transporte 95.6 0.0053 1.8E-07 53.0 2.6 22 67-88 35-56 (266)
361 1ly1_A Polynucleotide kinase; 95.6 0.0083 2.8E-07 47.9 3.7 22 66-87 3-24 (181)
362 3zvl_A Bifunctional polynucleo 95.6 0.023 7.9E-07 52.3 7.1 23 65-87 258-280 (416)
363 2nq2_C Hypothetical ABC transp 95.6 0.0053 1.8E-07 52.6 2.6 22 67-88 33-54 (253)
364 3t61_A Gluconokinase; PSI-biol 95.6 0.0082 2.8E-07 49.2 3.6 23 66-88 19-41 (202)
365 3fwy_A Light-independent proto 95.6 0.026 8.7E-07 49.9 7.0 34 64-97 47-80 (314)
366 3cm0_A Adenylate kinase; ATP-b 95.6 0.011 3.7E-07 47.6 4.2 23 66-88 5-27 (186)
367 2jaq_A Deoxyguanosine kinase; 95.5 0.0089 3E-07 48.8 3.7 22 67-88 2-23 (205)
368 3fb4_A Adenylate kinase; psych 95.5 0.009 3.1E-07 49.4 3.7 22 67-88 2-23 (216)
369 1tev_A UMP-CMP kinase; ploop, 95.5 0.01 3.5E-07 48.0 4.0 24 65-88 3-26 (196)
370 2plr_A DTMP kinase, probable t 95.5 0.01 3.5E-07 48.7 4.1 27 65-91 4-30 (213)
371 2ehv_A Hypothetical protein PH 95.5 0.011 3.9E-07 49.8 4.4 22 67-88 32-53 (251)
372 3vaa_A Shikimate kinase, SK; s 95.5 0.0096 3.3E-07 48.7 3.8 23 66-88 26-48 (199)
373 1jjv_A Dephospho-COA kinase; P 95.5 0.0083 2.8E-07 49.3 3.4 22 66-87 3-24 (206)
374 1odf_A YGR205W, hypothetical 3 95.5 0.01 3.5E-07 51.9 4.1 30 63-92 29-58 (290)
375 3tqc_A Pantothenate kinase; bi 95.5 0.013 4.5E-07 51.9 4.8 28 63-90 90-117 (321)
376 1u0l_A Probable GTPase ENGC; p 95.5 0.0073 2.5E-07 53.1 3.2 21 67-87 171-191 (301)
377 3syl_A Protein CBBX; photosynt 95.5 0.063 2.2E-06 46.8 9.3 30 63-92 65-94 (309)
378 1qhx_A CPT, protein (chloramph 95.5 0.0099 3.4E-07 47.5 3.7 23 66-88 4-26 (178)
379 2rhm_A Putative kinase; P-loop 95.5 0.011 3.9E-07 47.7 4.0 23 66-88 6-28 (193)
380 3fkq_A NTRC-like two-domain pr 95.4 0.0095 3.2E-07 54.0 3.8 34 63-96 141-175 (373)
381 2pjz_A Hypothetical protein ST 95.4 0.0065 2.2E-07 52.3 2.6 23 67-89 32-54 (263)
382 2r8r_A Sensor protein; KDPD, P 95.4 0.043 1.5E-06 45.8 7.5 33 64-96 5-37 (228)
383 4a74_A DNA repair and recombin 95.4 0.0081 2.8E-07 50.0 3.1 22 67-88 27-48 (231)
384 2qt1_A Nicotinamide riboside k 95.4 0.011 3.8E-07 48.6 3.9 24 65-88 21-44 (207)
385 3nh6_A ATP-binding cassette SU 95.4 0.0042 1.4E-07 54.7 1.3 22 67-88 82-103 (306)
386 3fgn_A Dethiobiotin synthetase 95.4 0.47 1.6E-05 40.2 14.1 127 66-192 27-197 (251)
387 3dl0_A Adenylate kinase; phosp 95.4 0.01 3.5E-07 49.1 3.6 21 67-87 2-22 (216)
388 1nn5_A Similar to deoxythymidy 95.3 0.013 4.6E-07 48.2 4.2 29 65-93 9-37 (215)
389 2ewv_A Twitching motility prot 95.3 0.016 5.4E-07 52.6 4.9 28 65-92 136-163 (372)
390 3tui_C Methionine import ATP-b 95.3 0.008 2.7E-07 54.2 2.9 22 67-88 56-77 (366)
391 3trf_A Shikimate kinase, SK; a 95.3 0.012 4.2E-07 47.3 3.7 23 66-88 6-28 (185)
392 2bbs_A Cystic fibrosis transme 95.3 0.0075 2.5E-07 52.7 2.5 22 67-88 66-87 (290)
393 2wwf_A Thymidilate kinase, put 95.3 0.015 5E-07 47.9 4.2 27 65-91 10-36 (212)
394 3fvq_A Fe(3+) IONS import ATP- 95.3 0.0085 2.9E-07 53.9 2.8 22 67-88 32-53 (359)
395 1lw7_A Transcriptional regulat 95.2 0.0083 2.8E-07 54.2 2.8 25 65-89 170-194 (365)
396 2gza_A Type IV secretion syste 95.2 0.0086 2.9E-07 54.1 2.8 24 66-89 176-199 (361)
397 1sq5_A Pantothenate kinase; P- 95.2 0.012 4.1E-07 51.8 3.7 27 64-90 79-105 (308)
398 2pbr_A DTMP kinase, thymidylat 95.2 0.016 5.5E-07 46.8 4.2 27 67-93 2-28 (195)
399 2pez_A Bifunctional 3'-phospho 95.2 0.018 6.2E-07 46.1 4.5 28 66-93 6-33 (179)
400 1y63_A LMAJ004144AAA protein; 95.2 0.013 4.5E-07 47.3 3.6 23 66-88 11-33 (184)
401 2z0h_A DTMP kinase, thymidylat 95.2 0.015 5E-07 47.2 4.0 27 67-93 2-28 (197)
402 1uf9_A TT1252 protein; P-loop, 95.2 0.014 4.7E-07 47.6 3.8 23 65-87 8-30 (203)
403 1z47_A CYSA, putative ABC-tran 95.2 0.0097 3.3E-07 53.5 2.9 22 67-88 43-64 (355)
404 3tlx_A Adenylate kinase 2; str 95.2 0.016 5.3E-07 49.2 4.1 25 64-88 28-52 (243)
405 2cdn_A Adenylate kinase; phosp 95.1 0.017 5.7E-07 47.2 4.1 25 64-88 19-43 (201)
406 4e22_A Cytidylate kinase; P-lo 95.1 0.012 4.1E-07 50.2 3.3 22 66-87 28-49 (252)
407 2yyz_A Sugar ABC transporter, 95.1 0.01 3.5E-07 53.4 2.9 22 67-88 31-52 (359)
408 3rlf_A Maltose/maltodextrin im 95.1 0.01 3.5E-07 53.8 2.9 22 67-88 31-52 (381)
409 3bh0_A DNAB-like replicative h 95.1 0.026 8.9E-07 49.9 5.5 27 67-93 70-96 (315)
410 2c95_A Adenylate kinase 1; tra 95.1 0.015 5.1E-07 47.1 3.7 23 66-88 10-32 (196)
411 1aky_A Adenylate kinase; ATP:A 95.1 0.015 5.2E-07 48.3 3.7 23 66-88 5-27 (220)
412 2v54_A DTMP kinase, thymidylat 95.1 0.014 4.9E-07 47.6 3.5 23 66-88 5-27 (204)
413 2pt7_A CAG-ALFA; ATPase, prote 95.1 0.0084 2.9E-07 53.4 2.2 23 67-89 173-195 (330)
414 1nij_A Hypothetical protein YJ 95.1 0.013 4.4E-07 51.9 3.4 23 66-88 5-27 (318)
415 2it1_A 362AA long hypothetical 95.1 0.011 3.7E-07 53.4 2.9 22 67-88 31-52 (362)
416 1p9r_A General secretion pathw 95.0 0.014 4.7E-07 53.8 3.6 26 65-90 167-192 (418)
417 3bgw_A DNAB-like replicative h 95.0 0.1 3.5E-06 48.3 9.6 31 67-97 199-229 (444)
418 3iij_A Coilin-interacting nucl 95.0 0.014 4.8E-07 46.7 3.3 23 66-88 12-34 (180)
419 2pt5_A Shikimate kinase, SK; a 95.0 0.017 5.9E-07 45.5 3.7 22 67-88 2-23 (168)
420 1gtv_A TMK, thymidylate kinase 95.0 0.0058 2E-07 50.4 0.9 26 67-92 2-27 (214)
421 1g29_1 MALK, maltose transport 95.0 0.011 3.9E-07 53.4 2.9 22 67-88 31-52 (372)
422 1ukz_A Uridylate kinase; trans 95.0 0.02 6.8E-07 46.8 4.2 23 66-88 16-38 (203)
423 1e4v_A Adenylate kinase; trans 95.0 0.016 5.5E-07 47.9 3.6 22 67-88 2-23 (214)
424 3of5_A Dethiobiotin synthetase 95.0 0.073 2.5E-06 44.6 7.7 67 126-194 109-182 (228)
425 1v43_A Sugar-binding transport 95.0 0.012 4E-07 53.3 2.9 22 67-88 39-60 (372)
426 1via_A Shikimate kinase; struc 95.0 0.015 5.1E-07 46.4 3.2 22 67-88 6-27 (175)
427 4fcw_A Chaperone protein CLPB; 95.0 0.059 2E-06 47.0 7.4 27 64-90 46-72 (311)
428 2w0m_A SSO2452; RECA, SSPF, un 94.9 0.018 6.1E-07 47.9 3.9 27 67-93 25-51 (235)
429 2oap_1 GSPE-2, type II secreti 94.8 0.011 3.6E-07 56.0 2.2 22 67-88 262-283 (511)
430 1gvn_B Zeta; postsegregational 94.8 0.021 7.2E-07 49.8 4.0 25 64-88 32-56 (287)
431 2bwj_A Adenylate kinase 5; pho 94.8 0.017 5.7E-07 46.9 3.2 23 66-88 13-35 (199)
432 3a4m_A L-seryl-tRNA(SEC) kinas 94.8 0.026 8.9E-07 48.3 4.5 28 66-93 5-32 (260)
433 3sr0_A Adenylate kinase; phosp 94.7 0.021 7.3E-07 47.1 3.7 22 67-88 2-23 (206)
434 1vht_A Dephospho-COA kinase; s 94.7 0.019 6.6E-07 47.5 3.5 22 66-87 5-26 (218)
435 1njg_A DNA polymerase III subu 94.7 0.11 3.6E-06 43.0 8.2 24 67-90 47-70 (250)
436 2vhj_A Ntpase P4, P4; non- hyd 94.7 0.051 1.8E-06 47.9 6.2 22 67-88 125-146 (331)
437 1zd8_A GTP:AMP phosphotransfer 94.7 0.019 6.6E-07 47.9 3.4 22 66-87 8-29 (227)
438 3gd7_A Fusion complex of cysti 94.7 0.015 5.1E-07 53.0 2.8 23 67-89 49-71 (390)
439 3d31_A Sulfate/molybdate ABC t 94.7 0.0098 3.4E-07 53.3 1.6 22 67-88 28-49 (348)
440 2ze6_A Isopentenyl transferase 94.7 0.024 8.2E-07 48.4 4.0 22 67-88 3-24 (253)
441 2grj_A Dephospho-COA kinase; T 94.7 0.022 7.5E-07 46.5 3.5 27 62-88 9-35 (192)
442 3kta_A Chromosome segregation 94.6 0.018 6.2E-07 46.1 3.0 23 67-89 28-50 (182)
443 3ez2_A Plasmid partition prote 94.6 0.32 1.1E-05 44.2 11.8 35 127-163 244-278 (398)
444 3igf_A ALL4481 protein; two-do 94.6 0.15 5.2E-06 46.0 9.3 31 67-97 4-34 (374)
445 3r20_A Cytidylate kinase; stru 94.6 0.024 8.4E-07 47.7 3.7 24 65-88 9-32 (233)
446 1qf9_A UMP/CMP kinase, protein 94.6 0.031 1.1E-06 44.9 4.3 23 66-88 7-29 (194)
447 2xb4_A Adenylate kinase; ATP-b 94.6 0.025 8.5E-07 47.2 3.7 22 67-88 2-23 (223)
448 1zak_A Adenylate kinase; ATP:A 94.5 0.021 7.1E-07 47.5 3.1 23 66-88 6-28 (222)
449 2x8a_A Nuclear valosin-contain 94.5 0.023 7.8E-07 49.2 3.5 22 67-88 46-67 (274)
450 1zuh_A Shikimate kinase; alpha 94.5 0.028 9.7E-07 44.3 3.8 22 67-88 9-30 (168)
451 2npi_A Protein CLP1; CLP1-PCF1 94.4 0.018 6.2E-07 53.7 2.8 25 66-90 139-163 (460)
452 1cr0_A DNA primase/helicase; R 94.4 0.028 9.5E-07 49.0 3.9 26 67-92 37-62 (296)
453 1uj2_A Uridine-cytidine kinase 94.4 0.024 8.3E-07 48.2 3.4 24 65-88 22-45 (252)
454 2p5t_B PEZT; postsegregational 94.4 0.021 7.3E-07 48.6 3.1 26 63-88 30-55 (253)
455 3umf_A Adenylate kinase; rossm 94.4 0.038 1.3E-06 46.0 4.5 24 65-88 29-52 (217)
456 3be4_A Adenylate kinase; malar 94.4 0.028 9.5E-07 46.6 3.7 23 66-88 6-28 (217)
457 1oxx_K GLCV, glucose, ABC tran 94.4 0.0097 3.3E-07 53.5 0.9 22 67-88 33-54 (353)
458 1m7g_A Adenylylsulfate kinase; 94.4 0.037 1.3E-06 45.6 4.5 26 65-90 25-50 (211)
459 2vli_A Antibiotic resistance p 94.4 0.016 5.5E-07 46.4 2.1 23 66-88 6-28 (183)
460 2orw_A Thymidine kinase; TMTK, 94.4 0.16 5.6E-06 40.8 8.1 28 67-94 5-32 (184)
461 1e6c_A Shikimate kinase; phosp 94.3 0.029 9.9E-07 44.4 3.5 22 67-88 4-25 (173)
462 1ixz_A ATP-dependent metallopr 94.3 0.026 8.7E-07 48.0 3.4 22 67-88 51-72 (254)
463 2obl_A ESCN; ATPase, hydrolase 94.3 0.024 8.4E-07 50.8 3.4 22 67-88 73-94 (347)
464 2vp4_A Deoxynucleoside kinase; 94.3 0.019 6.5E-07 48.1 2.5 24 65-88 20-43 (230)
465 4eaq_A DTMP kinase, thymidylat 94.3 0.035 1.2E-06 46.6 4.1 28 64-91 25-52 (229)
466 2iyv_A Shikimate kinase, SK; t 94.2 0.032 1.1E-06 44.7 3.6 22 67-88 4-25 (184)
467 1q57_A DNA primase/helicase; d 94.2 0.18 6.3E-06 47.4 9.3 25 67-91 244-268 (503)
468 1xwi_A SKD1 protein; VPS4B, AA 94.2 0.15 5.2E-06 45.0 8.2 25 64-88 44-68 (322)
469 1yqt_A RNAse L inhibitor; ATP- 94.1 0.024 8.4E-07 53.9 3.1 23 67-89 49-71 (538)
470 3nwj_A ATSK2; P loop, shikimat 94.1 0.029 9.8E-07 47.8 3.3 22 66-87 49-70 (250)
471 1ak2_A Adenylate kinase isoenz 94.1 0.036 1.2E-06 46.5 3.8 23 66-88 17-39 (233)
472 1f2t_A RAD50 ABC-ATPase; DNA d 94.1 0.028 9.5E-07 43.8 2.8 22 68-89 26-47 (149)
473 3pfi_A Holliday junction ATP-d 94.1 0.3 1E-05 43.1 10.0 25 64-88 54-78 (338)
474 3euj_A Chromosome partition pr 94.0 0.03 1E-06 52.4 3.5 23 67-89 31-53 (483)
475 2w58_A DNAI, primosome compone 94.0 0.044 1.5E-06 44.7 4.1 26 66-91 55-80 (202)
476 2v1u_A Cell division control p 94.0 0.26 9E-06 44.0 9.7 27 64-90 43-69 (387)
477 2f6r_A COA synthase, bifunctio 94.0 0.034 1.2E-06 48.2 3.5 22 65-86 75-96 (281)
478 1in4_A RUVB, holliday junction 93.9 0.036 1.2E-06 49.4 3.6 24 66-89 52-75 (334)
479 1iy2_A ATP-dependent metallopr 93.9 0.035 1.2E-06 47.9 3.4 22 67-88 75-96 (278)
480 3b5x_A Lipid A export ATP-bind 93.8 0.03 1E-06 53.9 3.1 23 67-89 371-393 (582)
481 2dpy_A FLII, flagellum-specifi 93.8 0.036 1.2E-06 51.4 3.4 22 67-88 159-180 (438)
482 3ozx_A RNAse L inhibitor; ATP 93.8 0.025 8.6E-07 53.8 2.4 23 66-88 26-48 (538)
483 3bos_A Putative DNA replicatio 93.7 0.058 2E-06 44.8 4.3 30 64-93 51-80 (242)
484 3b60_A Lipid A export ATP-bind 93.7 0.028 9.4E-07 54.2 2.5 22 67-88 371-392 (582)
485 2p65_A Hypothetical protein PF 93.6 0.049 1.7E-06 43.2 3.7 27 64-90 42-68 (187)
486 3j16_B RLI1P; ribosome recycli 93.6 0.034 1.2E-06 53.7 3.1 22 67-88 105-126 (608)
487 2axn_A 6-phosphofructo-2-kinas 93.6 0.059 2E-06 51.1 4.7 25 66-90 36-60 (520)
488 3gmt_A Adenylate kinase; ssgci 93.6 0.052 1.8E-06 45.5 3.7 25 64-88 7-31 (230)
489 1xx6_A Thymidine kinase; NESG, 93.6 0.39 1.3E-05 38.9 8.9 31 67-97 10-40 (191)
490 2cvh_A DNA repair and recombin 93.5 0.041 1.4E-06 45.3 3.1 21 67-87 22-42 (220)
491 2r6a_A DNAB helicase, replicat 93.5 1.4 4.9E-05 40.6 14.0 25 67-91 205-229 (454)
492 1svm_A Large T antigen; AAA+ f 93.5 0.045 1.6E-06 49.6 3.5 24 65-88 169-192 (377)
493 3qf7_A RAD50; ABC-ATPase, ATPa 93.5 0.039 1.3E-06 49.8 3.1 23 68-90 26-48 (365)
494 3foz_A TRNA delta(2)-isopenten 93.5 0.061 2.1E-06 47.2 4.1 23 66-88 11-33 (316)
495 3ake_A Cytidylate kinase; CMP 93.4 0.057 1.9E-06 44.0 3.8 22 67-88 4-25 (208)
496 1lv7_A FTSH; alpha/beta domain 93.4 0.056 1.9E-06 45.9 3.9 23 66-88 46-68 (257)
497 1n0w_A DNA repair protein RAD5 93.4 0.043 1.5E-06 45.9 3.1 21 67-87 26-46 (243)
498 1q3t_A Cytidylate kinase; nucl 93.4 0.059 2E-06 45.2 3.8 23 65-87 16-38 (236)
499 1tf7_A KAIC; homohexamer, hexa 93.3 0.18 6.3E-06 47.7 7.6 126 68-194 42-188 (525)
500 2yl4_A ATP-binding cassette SU 93.3 0.028 9.6E-07 54.3 1.9 22 67-88 372-393 (595)
No 1
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=6.5e-45 Score=338.24 Aligned_cols=264 Identities=63% Similarity=1.016 Sum_probs=229.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
+.++|+++|++|+|||||+++|++...+.|...+...+..+....|+.+|+|+......++..+..++|||||||++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 56899999999999999999999876665544333333456777888899999988888888888999999999999999
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccE
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPI 223 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 223 (330)
.+..+++.+|++|+|+|++++...++.+++..+...++|++++|+||+|+.+.++..+.+.++++++++.+++.+..+|+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 161 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPI 161 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCE
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcE
Confidence 99999999999999999999999999999999999999977889999999865555566777889999998886667899
Q ss_pred EEeeccccccCCccccchhh-HHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEec
Q 020176 224 IRGSATSALQGKNEEIGKKA-ILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLG 302 (330)
Q Consensus 224 ~~~Sa~~~~~g~~~~~~~~~-i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~ 302 (330)
+++||+++.++.+... ..+ +.+|++++.+++|.|.++.++|++|+|+++|.++|+|+|++|+|.+|+|++||.|.+.|
T Consensus 162 i~~SA~~g~n~~~~~~-~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~ 240 (397)
T 1d2e_A 162 IVGSALCALEQRDPEL-GLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLG 240 (397)
T ss_dssp EECCHHHHHTTCCTTT-THHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEE
T ss_pred EEeehhhcccccCCCc-cCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEeC
Confidence 9999999876543221 135 89999999999998888889999999999999999999999999999999999999988
Q ss_pred CCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 303 LTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 303 ~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
.+. +..++|++|+++++++++|.||+
T Consensus 241 ~~~--~~~~~V~~i~~~~~~~~~a~aG~ 266 (397)
T 1d2e_A 241 HSK--NIRTVVTGIEMFHKSLDRAEAGD 266 (397)
T ss_dssp TTE--EEEEEEEEEEETTEEESEEETTC
T ss_pred CCC--CeEEEEEEEEECCcccCEecCCC
Confidence 642 35799999999999999999996
No 2
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=5.8e-44 Score=332.90 Aligned_cols=268 Identities=70% Similarity=1.092 Sum_probs=229.5
Q ss_pred cCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCc-cceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc
Q 020176 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGK-AKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (330)
Q Consensus 60 ~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~-~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (330)
.+.++.++|+++|++|+|||||+++|++...+.|. ..+......|..+.|+.+|+|+......++..+..++|||||||
T Consensus 6 ~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 6 VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred cCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh
Confidence 44567789999999999999999999987655553 22222334688889999999999888888888899999999999
Q ss_pred hhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 139 ~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
++|...+..++..+|++|+|+|++++...++.+++..+...++|++++|+||+|+.+.++..+.+.+++.++++.+++.+
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG 165 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999888899999998645555667778888999988766
Q ss_pred CCccEEEeecccccc----------CCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEE
Q 020176 219 DEIPIIRGSATSALQ----------GKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVE 288 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~----------g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~ 288 (330)
..+|++++||+++.+ +.. ....++.+|++++.+++|.|.++.+.|++|+|+++|.++++|+|++|+|.
T Consensus 166 ~~~~~i~~SA~~g~~v~~~~~~~~~~~~--~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~ 243 (405)
T 2c78_A 166 DEVPVIRGSALLALEQMHRNPKTRRGEN--EWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIE 243 (405)
T ss_dssp TTSCEEECCHHHHHHHHHHCTTCCTTSC--HHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEECC
T ss_pred cCCCEEEccHHHhhhhhccccccccCCC--cccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEe
Confidence 678999999999754 211 11234889999999999988888899999999999999999999999999
Q ss_pred eeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 289 QGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 289 ~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
+|+|++||.|.+.|.+.+ +..++|++|+++++++++|.||+
T Consensus 244 ~G~l~~gd~v~~~~~~~~-~~~~~V~~i~~~~~~~~~a~aG~ 284 (405)
T 2c78_A 244 RGKVKVGDEVEIVGLAPE-TRKTVVTGVEMHRKTLQEGIAGD 284 (405)
T ss_dssp BSEEETTCEEEEESSSSS-CEEEEEEEEEETTEEESEEETTC
T ss_pred cccccCCCEEEEeCCCCC-eeeEEEEEEEECCcccCEEcCCC
Confidence 999999999999987643 36899999999999999999996
No 3
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=1.4e-42 Score=325.92 Aligned_cols=263 Identities=31% Similarity=0.439 Sum_probs=221.0
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHH---------------HhcCccceeeccccCCChhhhhcCceEEeEEEEeee
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 125 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~ 125 (330)
..+..++|+++|++|+|||||+++|+... .+.|...+...+..|..+.|+++|+|++.....++.
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 34677899999999999999999996431 123444444556688999999999999999998998
Q ss_pred CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCc-------hhhHHHHHHHHHcCCCeEEEEEeeccCcC---
Q 020176 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-------PQTKEHILLARQVGVPSLVCFLNKVDLVE--- 195 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~-------~~~~~~l~~~~~~~~p~iivviNK~D~~~--- 195 (330)
.+..++|||||||++|...+..+++.+|++|+|||++++.. .|+.+++..+...++|++|+|+||+|+..
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 89999999999999999999999999999999999999875 69999999999999998889999999964
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCC-CccEEEeeccccccCCccc--cchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEE
Q 020176 196 DEELLELVEMELRELLSFYKFPGD-EIPIIRGSATSALQGKNEE--IGKKAILKLMDAVDEYIPDPERQLDKPFLMPIED 272 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~~~Sa~~~~~g~~~~--~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~ 272 (330)
.++..+.+.+++.++++.+++... .+|++++||+++.+-..+. ..|+....|++.+.. +|+|.+..+.|++|+|++
T Consensus 173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~r~~v~~ 251 (439)
T 3j2k_7 173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDN-LPNFNRSVDGPIRLPIVD 251 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHh-CCCCccCCCCCeEEEEEE
Confidence 244556677788889988887543 6899999999864332211 134445567777765 677778889999999999
Q ss_pred EEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 273 VFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 273 ~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
+|. +.|+|+.|+|.+|+|++||.|+++|.+. .++|++|+++++++++|.||+
T Consensus 252 ~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~----~~~V~~i~~~~~~~~~a~aG~ 303 (439)
T 3j2k_7 252 KYK--DMGTVVLGKLESGSIFKGQQLVMMPNKH----NVEVLGILSDDTETDFVAPGE 303 (439)
T ss_pred EEc--CCCeEEEEEEEeeEEecCCEEEEccCCc----eEEEEEEEECCeEcCEecCCC
Confidence 986 7899999999999999999999998775 699999999999999999996
No 4
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=2.9e-42 Score=345.48 Aligned_cols=266 Identities=72% Similarity=1.113 Sum_probs=217.4
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (330)
+.++.++|+++|++|+|||||+++|++...+.|...+..+...|..+.|+.+|+|+......++..+..++|||||||++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 45678999999999999999999999765555543332233467778889999999988788888889999999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
|...+..++..+|++|+|||++++...|+.+++..+...++|++|+|+||+|+.+.++..+.+.+++.++++.+++.+..
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~ 451 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDD 451 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999988899999999875555666777889999998886677
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEE
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEV 300 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~ 300 (330)
+|++++||+++.++.. ....++.+|++.+.+.+|.|.++.+.|++++|+++|.++|+|+|++|+|.+|+|++||+|.+
T Consensus 452 vp~IpvSAktG~ng~~--~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I 529 (1289)
T 3avx_A 452 TPIVRGSALKALEGDA--EWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI 529 (1289)
T ss_dssp CCEEECCSTTTTTCCH--HHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEE
T ss_pred eeEEEEEeccCCCCCc--cccccchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEecCCEEEE
Confidence 9999999999865421 22357899999999999988888899999999999999999999999999999999999999
Q ss_pred ecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 301 LGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 301 ~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
.|.+. ...++|++|+++++++++|.||+
T Consensus 530 ~ps~~--~~~~kVksI~~~~~~v~eA~AGd 557 (1289)
T 3avx_A 530 VGIKE--TQKSTCTGVEMFRKLLDEGRAGE 557 (1289)
T ss_dssp ESSSS--CEEEEEEEEECSSCEESEEETTC
T ss_pred ecCCC--ceeEEEEEEeecCceeeEEecCC
Confidence 98763 35799999999999999999996
No 5
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=5.3e-42 Score=323.63 Aligned_cols=265 Identities=37% Similarity=0.502 Sum_probs=217.9
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHH---------------HhcCccceeeccccCCChhhhhcCceEEeEEEEeee
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 125 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~ 125 (330)
+.++.++|+++|++|+|||||+++|++.. .+.|+..+......|..+.|+.+|+|++.....++.
T Consensus 3 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~ 82 (458)
T 1f60_A 3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (458)
T ss_dssp CCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC
T ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec
Confidence 34567899999999999999999998642 122333332333457778889999999988888888
Q ss_pred CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCch-------hhHHHHHHHHHcCCCeEEEEEeeccCcC-hH
Q 020176 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP-------QTKEHILLARQVGVPSLVCFLNKVDLVE-DE 197 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~-------~~~~~l~~~~~~~~p~iivviNK~D~~~-~~ 197 (330)
.+..++|||||||++|...+..++..+|++|+|+|++++... ++.+++..+...++|++|+|+||+|+.+ .+
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCH
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCH
Confidence 889999999999999999999999999999999999987654 8999999999999988999999999984 34
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCcccc--chhh------------HHHHHHHHhhhCCCCCCCCC
Q 020176 198 ELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEI--GKKA------------ILKLMDAVDEYIPDPERQLD 263 (330)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~--~~~~------------i~~ll~~l~~~~~~~~~~~~ 263 (330)
+..+.+.++++++++.+++....+|++++||+++.+-..... .|.. ...|++++.. +++|.+..+
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~~p~~~~~ 241 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSRPTD 241 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cCCCcccCC
Confidence 455667778888998888755568999999998654322111 1110 2367777765 566778889
Q ss_pred CCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 264 KPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 264 ~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
.|++|+|+++|.++|.|+|++|+|.+|.+++||+|.+.|.+. .++|++|+.+++++++|.||+
T Consensus 242 ~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~----~~~V~~i~~~~~~~~~a~aG~ 304 (458)
T 1f60_A 242 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGV----TTEVKSVEMHHEQLEQGVPGD 304 (458)
T ss_dssp SCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTE----EEEEEEEEETTEECSCBCTTC
T ss_pred CCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCc----eEEEeEEEECCeEEEEEcCCC
Confidence 999999999999999999999999999999999999998754 799999999999999999986
No 6
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=2.1e-41 Score=318.01 Aligned_cols=263 Identities=36% Similarity=0.539 Sum_probs=206.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHH---------------HhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK 127 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~ 127 (330)
++.++|+++|++|+|||||+++|+... .+.|...+...+..|..+.|+.+|+|++.....++..+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 567899999999999999999998541 11222222222346777888999999998888888888
Q ss_pred eeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCC-------CchhhHHHHHHHHHcCCCeEEEEEeeccCcCh---H
Q 020176 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-------PMPQTKEHILLARQVGVPSLVCFLNKVDLVED---E 197 (330)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~-------~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~---~ 197 (330)
..++|||||||.+|...+..+++.+|++|+|+|++++ +..++.+++..+...++|++++|+||+|+.+. +
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 9999999999999999999999999999999999998 77899999999999998778899999999872 3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCcccc--chhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEe
Q 020176 198 ELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEI--GKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFS 275 (330)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~--~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~ 275 (330)
+..+.+.++++++++.+++....+|++++||+++.+-..... .|.....|++++.. +++|.+..++|++++|+++|.
T Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~-~~~p~~~~~~~~~~~v~~v~~ 242 (435)
T 1jny_A 164 KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPPKPVDKPLRIPIQDVYS 242 (435)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCCCCCGGGSCCBEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc-cCCCCCCCCCCeEEEEEEEEE
Confidence 455667778999999988765678999999998543221110 11111367888766 455666678999999999999
Q ss_pred eCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 276 IQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 276 ~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
+++.|+|++|+|.+|+|++||.|++.|.+. ..+|++|+++++++++|.||+
T Consensus 243 ~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~----~~~V~~i~~~~~~~~~a~aG~ 293 (435)
T 1jny_A 243 ISGVGTVPVGRVESGVLKVGDKIVFMPAGK----VGEVRSIETHHTKMDKAEPGD 293 (435)
T ss_dssp ETTTEEEEEEECCBSCEETTCEEEEETTTE----EEEEEEEEETTEEESEECTTC
T ss_pred eCCCcEEEEEEEecCeEEcCCEEEECCcee----EEEEEEEEECCcEEeEEcCCC
Confidence 999999999999999999999999998754 799999999999999999996
No 7
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=1.2e-40 Score=316.95 Aligned_cols=265 Identities=27% Similarity=0.359 Sum_probs=204.8
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHH---------------HhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 126 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~ 126 (330)
.++.++|+++|++|+|||||+++|+... ...|...+...+..|....++.+|+|++.....++..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 5678999999999999999999998641 1123333334456788889999999999998889988
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCC-------CchhhHHHHHHHHHcCCCeEEEEEeeccCcCh-HH
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-------PMPQTKEHILLARQVGVPSLVCFLNKVDLVED-EE 198 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~-------~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~-~~ 198 (330)
+..++|||||||++|...+..++..+|++|+|+|++++ ...++.+++..+...+++++|+|+||+|+.+. ++
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH
Confidence 99999999999999999999999999999999999987 56899999999999998779999999999862 44
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCcccc-----ch---hhHHHHHHHHhhhCCC--CCCCCCCCeEE
Q 020176 199 LLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEI-----GK---KAILKLMDAVDEYIPD--PERQLDKPFLM 268 (330)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~-----~~---~~i~~ll~~l~~~~~~--~~~~~~~~~~~ 268 (330)
..+++.+++.++++.+++....+|++++||+++.+-..+.. .| ..+.++|+.+...+|. |.+..+.|++|
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~ 269 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLF 269 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEE
Confidence 55667778888898888866678999999998644332211 11 1356667666555554 56678899999
Q ss_pred EEEEEEeeC---CCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc--------eeecEEecCC
Q 020176 269 PIEDVFSIQ---GRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK--------KILDRGEVSW 330 (330)
Q Consensus 269 ~i~~~~~~~---~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~--------~~~~~a~~g~ 330 (330)
+|+++|.++ +.|+|+.|+|.+|+|++||.|.++|.+. .++|++|++++ +++++|.||+
T Consensus 270 ~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~----~~~V~~i~~~~~~~~~~~~~~~~~a~aG~ 338 (483)
T 3p26_A 270 SVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQ----SCIVDKIQVGSQQGQSTNHEETDVAIKGD 338 (483)
T ss_dssp EEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTE----EEEEEEEEETTTC-----CCEESCEETTC
T ss_pred EEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCC----eEEEEEEEEcCccccccccccccEECCCC
Confidence 999999998 5899999999999999999999999876 69999999994 8999999996
No 8
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.2e-42 Score=331.62 Aligned_cols=265 Identities=29% Similarity=0.415 Sum_probs=185.3
Q ss_pred cCCcceeEEEEEcCCCCCHHHHHHHHHHHH---------------HhcCccceeeccccCCChhhhhcCceEEeEEEEee
Q 020176 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE 124 (330)
Q Consensus 60 ~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~ 124 (330)
...++.++|+++|++|+|||||+++|+... .+.|...+...+..|....|+.+|+|++.....+.
T Consensus 172 ~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~ 251 (592)
T 3mca_A 172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE 251 (592)
T ss_dssp SCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred ccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE
Confidence 345678999999999999999999997532 12233334445567888999999999999888888
Q ss_pred eCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCC-------chhhHHHHHHHHHcCCCeEEEEEeeccCcC-h
Q 020176 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-------MPQTKEHILLARQVGVPSLVCFLNKVDLVE-D 196 (330)
Q Consensus 125 ~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~-------~~~~~~~l~~~~~~~~p~iivviNK~D~~~-~ 196 (330)
..+..++|||||||.+|...+..++..+|++|+|||++++. ..++.+++..+..+++|++|+|+||+|+.+ .
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~ 331 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWS 331 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTC
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccccccc
Confidence 88889999999999999999999999999999999999854 889999999999999988999999999986 3
Q ss_pred HHHHHHHHHHHHHHH-HhcCCCCCCccEEEeeccccccCCc----cccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEE
Q 020176 197 EELLELVEMELRELL-SFYKFPGDEIPIIRGSATSALQGKN----EEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIE 271 (330)
Q Consensus 197 ~~~~~~~~~~~~~~~-~~~~~~~~~~pv~~~Sa~~~~~g~~----~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~ 271 (330)
++..+.+.+++.+++ +.+++....+|++++||+++.+-.. ....|+....|++.|....| |.+..+.|++|+|+
T Consensus 332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~~~~~p~r~~v~ 410 (592)
T 3mca_A 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLSID 410 (592)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSCTTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccccccccchheee
Confidence 455566777888888 8888866678999999998643321 12334445678999988766 67778999999999
Q ss_pred EEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeec-EEecCC
Q 020176 272 DVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILD-RGEVSW 330 (330)
Q Consensus 272 ~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~-~a~~g~ 330 (330)
++|.+ +.|+|++|+|.+|+|++||.|.+.|.+. .++|++|++++++++ +|.||+
T Consensus 411 ~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~----~~~V~~i~~~~~~~~~~a~aG~ 465 (592)
T 3mca_A 411 DVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQE----DAYVKNVIRNSDPSSTWAVAGD 465 (592)
T ss_dssp EEEEE-TTEEEEEEEEEESEEETTCEEEETTTTE----EEEEEEEECSSSCSCCEEETTC
T ss_pred EEEec-CCeEEEEEEEeeeeEccCCEEEEccCCc----eEEEEEEEEcCccCcceecCCC
Confidence 99999 9999999999999999999999998765 699999999999999 999996
No 9
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=7e-39 Score=299.05 Aligned_cols=244 Identities=33% Similarity=0.520 Sum_probs=198.9
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee---------------
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET--------------- 125 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~--------------- 125 (330)
.+++.++|+++|++|+|||||+++|++ . ..+....|..+|+|+......+..
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g------~-------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~ 72 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTG------V-------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 72 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHT------C-------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBC
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhC------C-------ccccChhhhcCCcEEEEeeeeeecccccccccccccccc
Confidence 346778999999999999999999983 2 134556677888888655433221
Q ss_pred C--------CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCC-chhhHHHHHHHHHcCCCeEEEEEeeccCcCh
Q 020176 126 A--------KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 126 ~--------~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~-~~~~~~~l~~~~~~~~p~iivviNK~D~~~~ 196 (330)
. ...++|||||||++|...+..++..+|++|+|+|++++. ..++.+++..+..++++++++|+||+|+.+.
T Consensus 73 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK 152 (410)
T ss_dssp TTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH
T ss_pred cccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH
Confidence 0 167999999999999999999999999999999999987 8999999999988898779999999999985
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEee
Q 020176 197 EELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSI 276 (330)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 276 (330)
++. +...+++.++++... ...+|++++||+++ .++.+|+++|...+|.|.++.+.|++++|+++|.+
T Consensus 153 ~~~-~~~~~~i~~~l~~~~--~~~~~~i~vSA~~g----------~gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v 219 (410)
T 1kk1_A 153 EKA-LENYRQIKEFIEGTV--AENAPIIPISALHG----------ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDV 219 (410)
T ss_dssp HHH-HHHHHHHHHHHTTST--TTTCCEEECBTTTT----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECC
T ss_pred HHH-HHHHHHHHHHHHhcC--cCCCeEEEeeCCCC----------CCHHHHHHHHHHhCCCCccccCCCcEEEEEEEEec
Confidence 433 223346666666543 24589999999997 46899999999989988888899999999999987
Q ss_pred CC--------CceEEEEEEEeeeeecCCEEEEecCCC----C--C--CceEEEEEEEeCceeecEEecCC
Q 020176 277 QG--------RGTVATGRVEQGTIKVGEEVEVLGLTQ----G--P--SLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 277 ~~--------~G~v~~g~v~~G~l~~g~~v~~~~~~~----~--~--~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
++ +|+|++|+|.+|+|++||+|.+.|... + . +..++|++|+.+++++++|.||+
T Consensus 220 ~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~ 289 (410)
T 1kk1_A 220 NKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGG 289 (410)
T ss_dssp SCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSS
T ss_pred cCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEECCeEecEEcCCC
Confidence 54 788999999999999999999988532 0 0 13689999999999999999996
No 10
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=2.2e-40 Score=313.28 Aligned_cols=262 Identities=32% Similarity=0.452 Sum_probs=182.4
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHH---------------hcCccceeeccccCCChhhhhcCceEEeEEEEeeeC
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLA---------------EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 126 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~ 126 (330)
.++.++|+++|++|+|||||+++|+.... ..|+..+...+.+|..+.|+.+|+|+......+...
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 46778999999999999999999974211 112222223345677888999999999887778888
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCC-------chhhHHHHHHHHHcCCCeEEEEEeeccCcC---h
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-------MPQTKEHILLARQVGVPSLVCFLNKVDLVE---D 196 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~-------~~~~~~~l~~~~~~~~p~iivviNK~D~~~---~ 196 (330)
+..++|||||||++|...+..++..+|++|+|||++++. ..++++++..+...++|++|+|+||+|+.. .
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 899999999999999999999999999999999999886 368999999999999988889999999964 2
Q ss_pred HHHHHHHHHHHHHHHHhc-CCC-CCCccEEEeeccccccCCccc----cchhhHHHHHHHHhhhCCCCCCCCCCCeEEEE
Q 020176 197 EELLELVEMELRELLSFY-KFP-GDEIPIIRGSATSALQGKNEE----IGKKAILKLMDAVDEYIPDPERQLDKPFLMPI 270 (330)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~-~~~-~~~~pv~~~Sa~~~~~g~~~~----~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i 270 (330)
++.++.+.+++.++++.+ ++. ...+|++++||+++.+-.... ..|+....|++.|.. +|.|.++.+.|++|+|
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~v 278 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDS-MTHLERKVNAPFIMPI 278 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHH-CCCCHHHHTSCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHh-CCCCcCCCCCCcEEEE
Confidence 455566777888888887 764 236899999999865432211 123223346666655 6767777789999999
Q ss_pred EEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeC-ceeecEEecCC
Q 020176 271 EDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF-KKILDRGEVSW 330 (330)
Q Consensus 271 ~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~-~~~~~~a~~g~ 330 (330)
+++|. +.|+|++|+|.+|+|++||.|.++|.+. .++|++|+++ ++++++|.||+
T Consensus 279 ~~~~~--~~G~v~~G~v~~G~l~~gd~v~~~p~~~----~~~V~~i~~~~~~~~~~a~aG~ 333 (467)
T 1r5b_A 279 ASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQ----TLEVTAIYDEADEEISSSICGD 333 (467)
T ss_dssp CEEEE--SSSEEEEEECCBSEEETTEEEEEETTTE----EEEEEEEECTTCCEESEEETTC
T ss_pred EEEEe--CCCeEEEEEEeeeEEeeCCEEEEccCCe----eEEEEEEeccCCcEeeEEcCCC
Confidence 99987 5789999999999999999999998764 6999999999 99999999996
No 11
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=2.5e-39 Score=303.95 Aligned_cols=264 Identities=25% Similarity=0.311 Sum_probs=205.1
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHH---hc------------Cc--cceeeccccCCChhhhhcCceEEeEEEEee
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLA---EE------------GK--AKAIAFDEIDKAPEEKKRGITIATAHVEYE 124 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~---~~------------g~--~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~ 124 (330)
.+..++|+++|++|+|||||+++|++... .. |. .........|..+.|+++|+|++.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 45678999999999999999999986431 00 10 000111234667788899999998888888
Q ss_pred eCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh-HHHHHHH
Q 020176 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED-EELLELV 203 (330)
Q Consensus 125 ~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~-~~~~~~~ 203 (330)
..+..++|||||||++|...+..++..+|++|+|+|++++...++.+++..+...++|++++|+||+|+.+. ++..+.+
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i 180 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESI 180 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999879999999999863 3445556
Q ss_pred HHHHHHHHHhcCCCCCCccEEEeeccccccCCccc--cchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCce
Q 020176 204 EMELRELLSFYKFPGDEIPIIRGSATSALQGKNEE--IGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGT 281 (330)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~--~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~ 281 (330)
.+++.++++.++.....+|++++||+++.+-.... ..|+....|++.+.. ++.|.+..+.|++++|++++..++.|+
T Consensus 181 ~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~~~~~~v~~v~~~~~~~~ 259 (434)
T 1zun_B 181 KADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILET-VEIASDRNYTDLRFPVQYVNRPNLNFR 259 (434)
T ss_dssp HHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHH-SCCTTCCCSSSCEEECCEEECSSSSCC
T ss_pred HHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhc-CCCcccCCCCCcEEEEEEEeccCCCce
Confidence 67888888887743356899999999864322111 112222224444443 566777788999999999998888888
Q ss_pred EEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 282 VATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 282 v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
++.|+|.+|+|++||.|.+.|.+. .++|++|+++++++++|.||+
T Consensus 260 g~~G~v~~G~l~~gd~v~~~p~~~----~~~V~~i~~~~~~~~~a~aG~ 304 (434)
T 1zun_B 260 GFAGTLASGIVHKGDEIVVLPSGK----SSRVKSIVTFEGELEQAGPGQ 304 (434)
T ss_dssp EEEEECCBSCEETTCEEEETTTCC----EEEEEEEEETTEEESEECTTC
T ss_pred EEEEEEecceEeCCCEEEEecCCe----EEEEEEEEEcCcceeEecCCC
Confidence 899999999999999999998765 799999999999999999996
No 12
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-40 Score=317.84 Aligned_cols=265 Identities=27% Similarity=0.356 Sum_probs=215.1
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHH---------------HhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 126 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~ 126 (330)
.++.++|+++|++|+|||||+|+|+... ...|...+...+..+....++.+|+|++.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 5677899999999999999999998421 1123333333445667788889999999988888888
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCC-------CchhhHHHHHHHHHcCCCeEEEEEeeccCcCh-HH
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-------PMPQTKEHILLARQVGVPSLVCFLNKVDLVED-EE 198 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~-------~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~-~~ 198 (330)
+..++|||||||++|...+..+++.+|++|+|||++++ ...++.+++..+...+++++|+|+||+|+.+. +.
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 89999999999999999999999999999999999875 46799999999999999889999999999862 44
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccc-----cchh---hHHHHHHHHhhhCCC--CCCCCCCCeEE
Q 020176 199 LLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEE-----IGKK---AILKLMDAVDEYIPD--PERQLDKPFLM 268 (330)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~-----~~~~---~i~~ll~~l~~~~~~--~~~~~~~~~~~ 268 (330)
..+.+.+++..+++.+++....+|++++||+++.+-..+. ..|+ .+.++|+.+....|. |.+..+.|++|
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~ 403 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLF 403 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEE
T ss_pred HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchhh
Confidence 5566777888889888886667899999999864433221 1222 244555544433443 45678899999
Q ss_pred EEEEEEeeC---CCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeC--------ceeecEEecCC
Q 020176 269 PIEDVFSIQ---GRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF--------KKILDRGEVSW 330 (330)
Q Consensus 269 ~i~~~~~~~---~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~--------~~~~~~a~~g~ 330 (330)
+|+++|.++ +.|+|+.|+|.+|+|++||.|.++|.+. .++|++|+++ ++++++|.||+
T Consensus 404 ~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~----~~~VksI~~~~~~~~~~~~~~v~~A~aGd 472 (611)
T 3izq_1 404 SVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQ----SCIVDKIQVGSQQGQSTNHEETDVAIKGD 472 (611)
T ss_dssp ECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTE----EEEEEEEECSSCCSCSSSCCCCCCEETTC
T ss_pred heeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCc----eEEEEEEEEcccccccccccccceecCCC
Confidence 999999998 5899999999999999999999998775 6999999999 48999999996
No 13
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=4.2e-39 Score=300.29 Aligned_cols=243 Identities=34% Similarity=0.532 Sum_probs=188.1
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee---------------C
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET---------------A 126 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~---------------~ 126 (330)
+++.++|+++|++++|||||+++|++ . ..+....|..+|+|+...+..... .
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g------~-------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~ 71 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTG------V-------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCP 71 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHS------C-------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCT
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhC------C-------ccccCcccccCCcEEEeccccccccccccccccccccccc
Confidence 35678999999999999999999983 2 134455677788887654332211 1
Q ss_pred --------CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCC-chhhHHHHHHHHHcCCCeEEEEEeeccCcChH
Q 020176 127 --------KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQVGVPSLVCFLNKVDLVEDE 197 (330)
Q Consensus 127 --------~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~-~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~ 197 (330)
...++|||||||++|...+..++..+|++|+|+|++++. ..++.+++..+..++++++++|+||+|+.+.+
T Consensus 72 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 72 NCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp TSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred ccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence 167999999999999999999999999999999999987 89999999998888887699999999998743
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeC
Q 020176 198 ELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQ 277 (330)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 277 (330)
+. +...+++.++++.+. ...+|++++||+++ +++.+|+++|.+.++.|.++.+.|++|+|+++|.++
T Consensus 152 ~~-~~~~~~i~~~l~~~~--~~~~~~i~vSA~~g----------~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~ 218 (408)
T 1s0u_A 152 QA-EENYEQIKEFVKGTI--AENAPIIPISAHHE----------ANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDIN 218 (408)
T ss_dssp TT-TTHHHHHHHHHTTST--TTTCCEEEC----------------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCC
T ss_pred HH-HHHHHHHHHHHhhcC--CCCCeEEEeeCCCC----------CCHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEeec
Confidence 21 122335666666543 24589999999997 468999999999899888888999999999999886
Q ss_pred C--------CceEEEEEEEeeeeecCCEEEEecCCC----C--C--CceEEEEEEEeCceeecEEecCC
Q 020176 278 G--------RGTVATGRVEQGTIKVGEEVEVLGLTQ----G--P--SLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 278 ~--------~G~v~~g~v~~G~l~~g~~v~~~~~~~----~--~--~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
+ +|+|++|+|.+|+|++||.|.+.|... + . +..++|++|+++++++++|.||+
T Consensus 219 ~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~ 287 (408)
T 1s0u_A 219 KPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGG 287 (408)
T ss_dssp CSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSS
T ss_pred CCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEECCEEcCEEeCCC
Confidence 4 788999999999999999999988531 1 0 23689999999999999999996
No 14
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=2.3e-38 Score=294.80 Aligned_cols=254 Identities=31% Similarity=0.436 Sum_probs=193.7
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhc--CccceeeccccCCChhhhhcCceEEeEEEE--e---eeCCeeEEEE
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEE--GKAKAIAFDEIDKAPEEKKRGITIATAHVE--Y---ETAKRHYAHV 133 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~--g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~--~---~~~~~~i~ii 133 (330)
..++.++|+++|++|+|||||+++|++..... +....... ... ......+.+....... + ......++||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 80 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIG-VCE--SCKKPEAYVTEPSCKSCGSDDEPKFLRRISFI 80 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEE-ECT--TSCTTTTEESSSCCGGGTCCSCCEEEEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcccccee-ecc--ccccccceecccccccccccccccccceEEEE
Confidence 34567899999999999999999998432111 00000000 000 0011112211110000 0 1122689999
Q ss_pred eCCCchhhHHHHHHhhhccCeEEEEEeCCCCC-chhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH
Q 020176 134 DCPGHADYVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (330)
Q Consensus 134 DtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~-~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~ 212 (330)
|||||++|...+..++..+|++++|+|++++. ..++.+++..+...+.+++++|+||+|+.+.++.. ...+++.++++
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~-~~~~~i~~~l~ 159 (403)
T 3sjy_A 81 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEAL-SQYRQIKQFTK 159 (403)
T ss_dssp ECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHH-HHHHHHHHHHT
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999987 89999999999999986699999999999865433 34446667776
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCC--------CceEEE
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQG--------RGTVAT 284 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~G~v~~ 284 (330)
.++. ..+|++++||+++ +++.+|+++|.+.++.+.++.+.|++++|+++|.+++ +|+|++
T Consensus 160 ~~~~--~~~~ii~vSA~~g----------~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~ 227 (403)
T 3sjy_A 160 GTWA--ENVPIIPVSALHK----------INIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIG 227 (403)
T ss_dssp TSTT--TTCCEEECBTTTT----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEE
T ss_pred hhCC--CCCEEEEEECCCC----------cChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEE
Confidence 5543 4689999999997 4699999999998998888889999999999998876 899999
Q ss_pred EEEEeeeeecCCEEEEecCCC------CCC--ceEEEEEEEeCceeecEEecCC
Q 020176 285 GRVEQGTIKVGEEVEVLGLTQ------GPS--LKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 285 g~v~~G~l~~g~~v~~~~~~~------~~~--~~~~v~si~~~~~~~~~a~~g~ 330 (330)
|+|.+|+|++||+|.+.|... +.| ..++|++|+++++++++|.||+
T Consensus 228 g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~ 281 (403)
T 3sjy_A 228 GSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGG 281 (403)
T ss_dssp EEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSS
T ss_pred EEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCC
Confidence 999999999999999988652 011 2589999999999999999996
No 15
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=4.9e-40 Score=311.69 Aligned_cols=244 Identities=32% Similarity=0.534 Sum_probs=196.2
Q ss_pred cCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 60 ~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
...++.++|+++|++|+|||||+++|++. .. ....|....|+.+|+|++.....+...+..++|||||||+
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~------~~---~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~ 84 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEI------AS---TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA 84 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTT------C-----------------------CCCEEEETTEEEEECCCSSHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCC------Cc---ccccccccccccCccEEecceEEEEECCEEEEEEECCChH
Confidence 33467789999999999999999999842 11 1124566778888999988777777788999999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc-CCCC
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY-KFPG 218 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~ 218 (330)
+|...+..++..+|++|+|+|++++...++.+++..+...++|. ++|+||+|+.+. +..+.+.+++.++++.. ++
T Consensus 85 ~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~~-~~~~~~~~~l~~~l~~~~~~-- 160 (482)
T 1wb1_A 85 DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNAGT-EEIKRTEMIMKSILQSTHNL-- 160 (482)
T ss_dssp HHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSSCH-HHHHHHHHHHHHHHHHSSSG--
T ss_pred HHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCcccc-hhHHHHHHHHHHHHhhhccc--
Confidence 99999999999999999999999999999999999999999995 789999999974 34455667888888776 54
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCC--CCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP--ERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~--~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~ 296 (330)
..+|++++||+++ +++.+|+++|.+.++.| .++.++|++++|+++|.+++.|+|++|+|.+|.|++||
T Consensus 161 ~~~~ii~vSA~~g----------~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd 230 (482)
T 1wb1_A 161 KNSSIIPISAKTG----------FGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGD 230 (482)
T ss_dssp GGCCEEECCTTTC----------TTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSE
T ss_pred ccceEEEEECcCC----------CCHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCC
Confidence 2579999999986 45888888888876545 66778899999999999999999999999999999999
Q ss_pred EEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 297 EVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 297 ~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
.|.+.|.+. .++|++|+.+++++++|.||+
T Consensus 231 ~v~~~p~~~----~~~V~~i~~~~~~v~~a~~G~ 260 (482)
T 1wb1_A 231 ELKVLPINM----STKVRSIQYFKESVMEAKAGD 260 (482)
T ss_dssp EECCTTTCC----CEEECCBCGGGSCBCCCCSSC
T ss_pred EEEECCCCc----EEEEeEEEECCeEeeEecCCC
Confidence 999988765 589999999999999999996
No 16
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=9.8e-39 Score=292.90 Aligned_cols=224 Identities=19% Similarity=0.274 Sum_probs=187.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (330)
+|+++|++|+|||||+++|+ ++|+|++.....++..+..++|||||||++|...+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHH
Confidence 89999999999999999987 246777777777888888999999999999999999
Q ss_pred HhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEe-eccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEE
Q 020176 147 TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLN-KVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIR 225 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviN-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~ 225 (330)
.+++.+|++|+|+| +++...++.+++..+...++|.+++++| |+|+ + .+..+.+.++++++++.+++ ..+|+++
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~-~~~~~~~~~~i~~~l~~~~~--~~~~ii~ 153 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-H-MHAIDELKAKLKVITSGTVL--QDWECIS 153 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C-HHHHHHHHHHHHHHTTTSTT--TTCEEEE
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C-HHHHHHHHHHHHHHHHhcCC--CceEEEe
Confidence 99999999999999 8999999999999999999996578999 9999 5 34444455677777776654 4589999
Q ss_pred --eeccccccCCccccchhhHHHHHHHHhhhCCCC---CCC-CCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEE
Q 020176 226 --GSATSALQGKNEEIGKKAILKLMDAVDEYIPDP---ERQ-LDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVE 299 (330)
Q Consensus 226 --~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~---~~~-~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~ 299 (330)
+||+++. +..++++|++.|.+.++.+ ..+ ...|++++|+++|.++++|+|++|+|.+|+|++||+|+
T Consensus 154 ~~~SA~~~~-------~g~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~ 226 (370)
T 2elf_A 154 LNTNKSAKN-------PFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTK 226 (370)
T ss_dssp CCCCTTSSS-------TTTTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEE
T ss_pred cccccccCc-------CCCCHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEE
Confidence 9999821 1156778888777766533 122 45678999999999999999999999999999999999
Q ss_pred EecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 300 VLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 300 ~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
+.|.+. .++|++|+++++++++|.||+
T Consensus 227 ~~p~~~----~~~V~~i~~~~~~v~~a~aGd 253 (370)
T 2elf_A 227 IFPLDR----DIEIRSIQSHDVDIDSAPAGT 253 (370)
T ss_dssp EETTTE----EEEEEEEEETTEEESEEETTC
T ss_pred ECCCCc----EEEEeEEEECCCCccEEcCCC
Confidence 998765 799999999999999999996
No 17
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=2.8e-36 Score=289.32 Aligned_cols=253 Identities=23% Similarity=0.338 Sum_probs=182.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHH---HHhcCccc---eeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCC
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKV---LAEEGKAK---AIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCP 136 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~---~~~~g~~~---~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtP 136 (330)
.+.+||+|+||.++|||||+.+|+.. ....|... ......+|..+.|++||+|+......+.+.+..++|||||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 34689999999999999999999732 12222211 1112357899999999999999999999999999999999
Q ss_pred CchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh--HHHHHHHHHHHH------
Q 020176 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED--EELLELVEMELR------ 208 (330)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~--~~~~~~~~~~~~------ 208 (330)
||.||..++.++++.+|++|+||||.+|++.||...|+.+...++| .++++||||.... .+..+++.+.+.
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp-~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~ 187 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATP-VMTFVNKMDREALHPLDVMADIEQHLQIECAPM 187 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC-EEEEEECTTSCCCCHHHHHHHHHHHHTSEEEES
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCc-eEEEEecccchhcchhHhhhhhhhhcCCceEeE
Confidence 9999999999999999999999999999999999999999999999 6689999998752 222222222110
Q ss_pred -------------------------------------------------------------HHHHhcC--------CCCC
Q 020176 209 -------------------------------------------------------------ELLSFYK--------FPGD 219 (330)
Q Consensus 209 -------------------------------------------------------------~~~~~~~--------~~~~ 219 (330)
.+....+ +.+.
T Consensus 188 ~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~ 267 (548)
T 3vqt_A 188 TWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGE 267 (548)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTS
T ss_pred EeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCC
Confidence 0000000 1224
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC---------CCCCCeEEEEEEEEee---CCCceEEEEEE
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER---------QLDKPFLMPIEDVFSI---QGRGTVATGRV 287 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~---------~~~~~~~~~i~~~~~~---~~~G~v~~g~v 287 (330)
.+|+++.||+++ .|+..||+.+..++|+|.. +.++||...|++++.. +++|++.++||
T Consensus 268 ~~PV~~gSA~~~----------~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV 337 (548)
T 3vqt_A 268 LTPVFFGSAINN----------FGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRI 337 (548)
T ss_dssp EEEEEECBGGGT----------BSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEE
T ss_pred cceeeecccccC----------cCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEE
Confidence 579999999987 4699999999999998853 3468999999998866 88999999999
Q ss_pred EeeeeecCCEEEEecCCCCCCceEEEEEEEeCc----eeecEEecCC
Q 020176 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 288 ~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
.+|+|+.|+.|++...+. ..+|..+..++ .++++|.||.
T Consensus 338 ~sG~l~~g~~v~~~~~~~----~~rv~~l~~~~g~~~~~v~~a~AGd 380 (548)
T 3vqt_A 338 CSGTFTRGMRLKHHRTGK----DVTVANATIFMAQDRTGVEEAFPGD 380 (548)
T ss_dssp EESCEETTCEEEETTTTE----EEECTTCEECCCSSCCSSCEECTTC
T ss_pred ecceecCCCEEEeecccc----ccccchhhhhccccccccCEEecCC
Confidence 999999999999875544 57777766654 5899999984
No 18
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=4.4e-35 Score=281.91 Aligned_cols=245 Identities=24% Similarity=0.327 Sum_probs=182.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC-----CeeEEEEeCCC
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-----KRHYAHVDCPG 137 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-----~~~i~iiDtPG 137 (330)
...+||+++|++|+|||||+++|+......... .......|..+.|+++|+|+......+.+. ...++||||||
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~-~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISER-EKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccc-cccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 346799999999999999999998532110000 012234677888999999987655444332 36889999999
Q ss_pred chhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
|.+|..++..+++.+|++|+|+|++++...++.++|..+...++| +++|+||+|+.... .+.+ ..++.+.+++.
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~--~~~v---~~el~~~lg~~ 156 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPSAD--VDRV---KKQIEEVLGLD 156 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCC--HHHH---HHHHHHTSCCC
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccccC--HHHH---HHHHHHhhCCC
Confidence 999999999999999999999999999999999999999999999 88999999998632 1222 23334444542
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCE
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE 297 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~ 297 (330)
..+++++||+++ .++.+|++++.+.+|+|..+.+.|+++.|++++.+++.|+|++|+|.+|+|++||.
T Consensus 157 --~~~vi~vSAktg----------~GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~ 224 (600)
T 2ywe_A 157 --PEEAILASAKEG----------IGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDK 224 (600)
T ss_dssp --GGGCEECBTTTT----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCE
T ss_pred --cccEEEEEeecC----------CCchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCE
Confidence 246999999997 46999999999999998888899999999999999999999999999999999999
Q ss_pred EEEecCCCCCCceEEEEEEEeCc---eeecEEecCC
Q 020176 298 VEVLGLTQGPSLKTTVTGVEMFK---KILDRGEVSW 330 (330)
Q Consensus 298 v~~~~~~~~~~~~~~v~si~~~~---~~~~~a~~g~ 330 (330)
|++.+.+. ..+|++|..++ .++++|.||+
T Consensus 225 I~~~~~~~----~~~v~~i~~~~~~~~~v~~~~aGd 256 (600)
T 2ywe_A 225 IMLMSTGK----EYEVTEVGAQTPKMTKFDKLSAGD 256 (600)
T ss_dssp EEETTTTE----EEECCEEEEESSSEEEESCEETTC
T ss_pred EEeccccc----eEeeecccccCCCceECCEEecCc
Confidence 99988654 57777777654 7899999985
No 19
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=2.3e-34 Score=277.43 Aligned_cols=244 Identities=25% Similarity=0.361 Sum_probs=178.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC-----CeeEEEEeCCCc
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-----KRHYAHVDCPGH 138 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-----~~~i~iiDtPG~ 138 (330)
..+||+|+|++|+|||||+++|+......... .......|..+.|+.+|+|+......+.+. ...++|||||||
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~-~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR-EMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccc-cccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 46799999999999999999998532110000 112234677888999999998766655443 368999999999
Q ss_pred hhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 139 ~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
.+|..++..+++.+|++|+|+|++++...++.++|..+...++| +++|+||+|+.... .+.+. .++.+.+++.
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~--~~~v~---~ei~~~lg~~- 154 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAAD--PERVA---EEIEDIVGID- 154 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCC--HHHHH---HHHHHHTCCC-
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCccccc--HHHHH---HHHHHHhCCC-
Confidence 99999999999999999999999999999999999999999999 88999999998632 12222 2333444542
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEE
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEV 298 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v 298 (330)
..+++++||+++ .++.+|++++.+.+|.|..+.+.|+++.|++++.++++|++++|+|.+|+|++||.+
T Consensus 155 -~~~vi~vSAktg----------~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v 223 (599)
T 3cb4_D 155 -ATDAVRCSAKTG----------VGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKV 223 (599)
T ss_dssp -CTTCEEECTTTC----------TTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEE
T ss_pred -cceEEEeecccC----------CCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEE
Confidence 235899999997 569999999999999998888999999999999999999999999999999999999
Q ss_pred EEecCCCCCCceEEEEEEEeC---ceeecEEecCC
Q 020176 299 EVLGLTQGPSLKTTVTGVEMF---KKILDRGEVSW 330 (330)
Q Consensus 299 ~~~~~~~~~~~~~~v~si~~~---~~~~~~a~~g~ 330 (330)
.+.+.+. ..+|.+|..+ ..+++++.||+
T Consensus 224 ~~~~~~~----~~~v~~i~~~~~~~~~~~~~~aGd 254 (599)
T 3cb4_D 224 KVMSTGQ----TYNADRLGIFTPKQVDRTELKCGE 254 (599)
T ss_dssp EETTTCC----EEECCEEEEESSSEEECSEECTTC
T ss_pred Eeccccc----eeEEeeeeeccCCceECCEEcCCC
Confidence 9988765 4677777764 46889999885
No 20
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=4.8e-34 Score=272.48 Aligned_cols=248 Identities=24% Similarity=0.347 Sum_probs=194.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHH---HhcCccce---eeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKA---IAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~---~~~g~~~~---~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (330)
..++|+|+|++|+|||||+++|+... ...|.... ......+..+.++.+|+|+......+.+.+..++||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 45799999999999999999997321 11111000 0111235556778899999888888888899999999999
Q ss_pred chhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChH--HHHHHHHHHHHHHHHh--
Q 020176 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE--ELLELVEMELRELLSF-- 213 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~--~~~~~~~~~~~~~~~~-- 213 (330)
|.+|...+..+++.+|++|+|+|++++...++..+|..+...++| +++|+||+|+.... +..+ ++.+.+..
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~~~~~l~----ei~~~l~~~~ 166 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTP-IMTFINKMDRDTRPSIELLD----EIESILRIHC 166 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCC-EEEEEECTTSCCSCHHHHHH----HHHHHHCCEE
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEeCCCCccccHHHHHH----HHHHhhCCCc
Confidence 999999999999999999999999999999999999999999999 88999999997532 1122 22221110
Q ss_pred -----------------------------------------------------------------------------cCC
Q 020176 214 -----------------------------------------------------------------------------YKF 216 (330)
Q Consensus 214 -----------------------------------------------------------------------------~~~ 216 (330)
.-.
T Consensus 167 ~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~ 246 (528)
T 3tr5_A 167 APVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYL 246 (528)
T ss_dssp EESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred eeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHh
Confidence 000
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCC---------CCCCeEEEEEEEEe--eC-CCceEEE
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQ---------LDKPFLMPIEDVFS--IQ-GRGTVAT 284 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~---------~~~~~~~~i~~~~~--~~-~~G~v~~ 284 (330)
.+..+|+|++||+++ .|+.+|++++.+++|+|... .+.||..+|+++.. +| ++|++++
T Consensus 247 ~~~~~PV~~gSA~~~----------~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~ 316 (528)
T 3tr5_A 247 KGELTPIFFGSAINN----------FGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAF 316 (528)
T ss_dssp TTSEEEEEECBGGGT----------BSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEE
T ss_pred cCceeEEEeccccCC----------ccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEE
Confidence 123359999999997 47999999999999988542 35899999999874 67 9999999
Q ss_pred EEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeC----ceeecEEecCC
Q 020176 285 GRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEVSW 330 (330)
Q Consensus 285 g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~----~~~~~~a~~g~ 330 (330)
+||.+|+|++||.|++.+.+. ..+|.++..+ ++++++|.||+
T Consensus 317 ~RV~sG~l~~g~~v~~~~~~~----~~rv~~~~~~~~~~~~~v~~a~aGd 362 (528)
T 3tr5_A 317 LRIASGQYQKGMKAYHVRLKK----EIQINNALTFMAGKRENAEEAWPGD 362 (528)
T ss_dssp EEEEESCEETTEEEEETTTTE----EEEESSCBCCBTTCSSCCSEECTTC
T ss_pred EEEecCeEcCCCEEEecCCCc----eEEEeeeEEEeCCCeeECCEECCCC
Confidence 999999999999999987665 6899998874 57899999995
No 21
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.8e-33 Score=278.53 Aligned_cols=252 Identities=25% Similarity=0.333 Sum_probs=177.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHH---HhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC-------CeeEEE
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-------KRHYAH 132 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~---~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-------~~~i~i 132 (330)
.+.+||+|+||.++|||||+.+|+... ...|+.... ...+|..+.|++||+|+......+.+. ++.++|
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~-~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDG-AATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCC-CccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 457899999999999999999997432 233332211 235788999999999998877666543 578999
Q ss_pred EeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh--HHHHHHHHHHH---
Q 020176 133 VDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED--EELLELVEMEL--- 207 (330)
Q Consensus 133 iDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~--~~~~~~~~~~~--- 207 (330)
||||||.||..++.++++.+|++|+|||+.+|++.||...|+.+...++| .++|+||||+... ....+++.+.+
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp-~i~~iNKiDr~~a~~~~~~~ei~~~l~~~ 168 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVP-RIVYVNKMDRQGANFLRVVEQIKKRLGHT 168 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCC-EEEEEECSSSTTCCHHHHHHHHHHHHCSC
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEccccccCccHHHHHHHhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999 6689999998642 11111111100
Q ss_pred ---------------------------------------------------------------------HHHHH------
Q 020176 208 ---------------------------------------------------------------------RELLS------ 212 (330)
Q Consensus 208 ---------------------------------------------------------------------~~~~~------ 212 (330)
..+++
T Consensus 169 ~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~ 248 (709)
T 4fn5_A 169 PVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSE 248 (709)
T ss_dssp EEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCH
T ss_pred eeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccH
Confidence 00000
Q ss_pred --------hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC--------------------CCCC
Q 020176 213 --------FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER--------------------QLDK 264 (330)
Q Consensus 213 --------~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~--------------------~~~~ 264 (330)
..-......|+++.||..+ .++..||+.+..++|+|.. +.+.
T Consensus 249 ~~~~~~l~~~~~~~~~~pv~~gsa~~~----------~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~ 318 (709)
T 4fn5_A 249 AEIKEGLRLRTLACEIVPAVCGSSFKN----------KGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNE 318 (709)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECBTTTT----------BTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTS
T ss_pred HHHHHHHHHhhhhceeeeeeeeecccC----------CchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccC
Confidence 0001223478999999886 4689999999999998842 4578
Q ss_pred CeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc----eeecEEecCC
Q 020176 265 PFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 265 ~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
|+.++|+++...+++|.+.++||.+|+|++||+|++...+. ..+|..|...+ .++++|.||.
T Consensus 319 pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~----~~~v~~l~~~~g~~~~~v~~~~aGd 384 (709)
T 4fn5_A 319 PFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGK----KERVGRMVQMHANQREEIKEVRAGD 384 (709)
T ss_dssp CCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCC----CCBCCCEECCCSSCCCEESEECTTC
T ss_pred cceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCc----EEeecceeEeecceeeEeeeecCCC
Confidence 99999999999999999999999999999999998765544 34555554433 6899999984
No 22
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=6.3e-36 Score=292.37 Aligned_cols=249 Identities=25% Similarity=0.352 Sum_probs=196.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHH---hcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLA---EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
.+||+|+||.++|||||+.+|+.... +.|.... ....+|..+.|++||+|+......+.+.+..++|||||||.||
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~-g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDK-GTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCC-SCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCcccccccc-CCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 57999999999999999999975432 2222211 1235789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh--HHHHHHHHH--------------
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED--EELLELVEM-------------- 205 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~--~~~~~~~~~-------------- 205 (330)
..++.++++.+|++|+||||.+|++.||+.+|+.+...++| .|+++||||.... ....+++.+
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~ 159 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP-TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVEL 159 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCS-CEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCS
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-eEEEEeccccccCCHHHHHHHHHHHhCCCccccceeEe
Confidence 99999999999999999999999999999999999999999 5578999998652 111111111
Q ss_pred --------------------HHHHHHHhc----CC--------------CCCCccEEEeeccccccCCccccchhhHHHH
Q 020176 206 --------------------ELRELLSFY----KF--------------PGDEIPIIRGSATSALQGKNEEIGKKAILKL 247 (330)
Q Consensus 206 --------------------~~~~~~~~~----~~--------------~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~l 247 (330)
.-.++++.+ .+ ....+|+++.||+++ .|+..|
T Consensus 160 ~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~----------~Gv~~L 229 (638)
T 3j25_A 160 YPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSN----------IGIDNL 229 (638)
T ss_dssp CGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTC----------CSHHHH
T ss_pred eccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccC----------CCchhH
Confidence 000111111 00 112479999999986 469999
Q ss_pred HHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeC----ceee
Q 020176 248 MDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKIL 323 (330)
Q Consensus 248 l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~----~~~~ 323 (330)
|+.+..++|+|....+.|+.++|+++...+++|++.++||.+|+|+.||.|++...+. .+|..+... ..++
T Consensus 230 Ld~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~-----~~v~~l~~~~g~~~~~v 304 (638)
T 3j25_A 230 IEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEK-----IKVTEMYTSINGELCKI 304 (638)
T ss_dssp HHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCCC-----SSBCCCCSSCCCCBSCC
T ss_pred hhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCcc-----eeEEeeecccccccccc
Confidence 9999999999988888999999999999999999999999999999999997654332 344444433 3578
Q ss_pred cEEecCC
Q 020176 324 DRGEVSW 330 (330)
Q Consensus 324 ~~a~~g~ 330 (330)
++|.||.
T Consensus 305 ~~a~aGd 311 (638)
T 3j25_A 305 DRAYSGE 311 (638)
T ss_dssp CTTBCCC
T ss_pred cccccce
Confidence 8888874
No 23
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=4.1e-33 Score=266.33 Aligned_cols=251 Identities=22% Similarity=0.320 Sum_probs=180.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHH---HhcCccce---eeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCC
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKA---IAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCP 136 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~---~~~g~~~~---~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtP 136 (330)
...++|+++|++|+|||||+++|+... ...|.... ......|..+.|+.+|+|+......+.+.+..++|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 346899999999999999999998521 11111000 001234566778889999888888888889999999999
Q ss_pred CchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHh---
Q 020176 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF--- 213 (330)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~--- 213 (330)
||.+|...+..+++.+|++|+|+|+.++...++.+++..+...++| +++|+||+|+..... ..+.+++++.+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~--~~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP--MELLDEVENELKIGCA 167 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH--HHHHHHHHHHHCCEEE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH--HHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999999999999999888999 889999999976321 1111122222110
Q ss_pred -------------------------c----C------------------------------------------------C
Q 020176 214 -------------------------Y----K------------------------------------------------F 216 (330)
Q Consensus 214 -------------------------~----~------------------------------------------------~ 216 (330)
+ + .
T Consensus 168 ~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~ 247 (529)
T 2h5e_A 168 PITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFL 247 (529)
T ss_dssp ESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred ceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHH
Confidence 0 0 0
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCC---------CCCCeEEEEEEEEe---eCCCceEEE
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQ---------LDKPFLMPIEDVFS---IQGRGTVAT 284 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~---------~~~~~~~~i~~~~~---~~~~G~v~~ 284 (330)
.+..+|++++||+++ .|+..||+.+..++|+|... .+.||.++|+++.. .+++|++++
T Consensus 248 ~~~~~Pv~~gSA~~~----------~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~ 317 (529)
T 2h5e_A 248 AGEITPVFFGTALGN----------FGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAF 317 (529)
T ss_dssp TTSEEEEEECBTTTT----------BSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEE
T ss_pred hCceeEEEeeecccC----------CCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEE
Confidence 123468999999886 46999999999999987532 25789999988854 467999999
Q ss_pred EEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeC----ceeecEEecCC
Q 020176 285 GRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEVSW 330 (330)
Q Consensus 285 g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~----~~~~~~a~~g~ 330 (330)
|||.+|+|++||.|++.+.+. ..+|.+|+.+ ++++++|.||.
T Consensus 318 ~RV~sG~l~~g~~v~~~~~~~----~~~v~~i~~~~g~~~~~v~~a~aGd 363 (529)
T 2h5e_A 318 MRVVSGKYEKGMKLRQVRTAK----DVVISDALTFMAGDRSHVEEAYPGD 363 (529)
T ss_dssp EEEEESCEETTCEEEETTTTE----EEECSCEECCCC-----CCEECTTC
T ss_pred EEEecCeEcCCCEEEEeeCCC----EEEeceeeEEeCCCceEcceECCCC
Confidence 999999999999999987654 6899999976 67999999995
No 24
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=9.3e-32 Score=265.24 Aligned_cols=250 Identities=24% Similarity=0.322 Sum_probs=195.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHH---HhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC-------eeEEE
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-------RHYAH 132 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~---~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~-------~~i~i 132 (330)
...++|+|+|+.|+|||||+++|+... ...|.... .....|..+.|+.+|+|+......+.+.+ ..++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~-g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHD-GAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCC-CceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 345799999999999999999997531 11111100 11245677788899999988776666655 88999
Q ss_pred EeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH
Q 020176 133 VDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (330)
Q Consensus 133 iDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~ 212 (330)
||||||.+|...+..+++.+|++|+|+|++++...++..+|..+...++| +++|+||+|+.... .+.+.+++++.+.
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip-~ilviNKiD~~~~~--~~~~~~~l~~~l~ 163 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVP-RIAFVNKMDRMGAN--FLKVVNQIKTRLG 163 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEeCCCccccc--HHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999889999 77899999987531 1111122222211
Q ss_pred h------------------------------------------------------------------------c------
Q 020176 213 F------------------------------------------------------------------------Y------ 214 (330)
Q Consensus 213 ~------------------------------------------------------------------------~------ 214 (330)
. |
T Consensus 164 ~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l 243 (704)
T 2rdo_7 164 ANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEEL 243 (704)
T ss_pred CCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCC
Confidence 0 0
Q ss_pred ------------CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC--------------------CC
Q 020176 215 ------------KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER--------------------QL 262 (330)
Q Consensus 215 ------------~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~--------------------~~ 262 (330)
-..+..+|++++||+++ .|+..||+.+..++|+|.. +.
T Consensus 244 ~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~ 313 (704)
T 2rdo_7 244 TEAEIKGALRQRVLNNEIILVTCGSAFKN----------KGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASD 313 (704)
T ss_pred CHHHHHHHHHHHHHhCCeeEEEEeecccC----------ccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCC
Confidence 00112378999999986 4689999999999998753 15
Q ss_pred CCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeC----ceeecEEecCC
Q 020176 263 DKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEVSW 330 (330)
Q Consensus 263 ~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~----~~~~~~a~~g~ 330 (330)
+.|+.++|++++.++++|++++|||.+|+|++||.|++.+.+. ..+|.+|... .+++++|.||.
T Consensus 314 ~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~----~~~v~~l~~~~g~~~~~v~~~~aGd 381 (704)
T 2rdo_7 314 DEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAA----RERFGRIVQMHANKREEIKEVRAGD 381 (704)
T ss_pred CCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCc----EEEeceEEEEeCCCceEcceeCCCC
Confidence 7899999999999999999999999999999999999876554 5788887754 47999999985
No 25
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=1.8e-31 Score=262.91 Aligned_cols=250 Identities=26% Similarity=0.330 Sum_probs=181.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHH---hcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLA---EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
...++|+|+|++|+|||||+++|+.... ..|.... .....|....|+.+++|+......+.+.+..++|||||||.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~-~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHE-GAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecC-CceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 4568999999999999999999985321 1111100 11235666778888999988877788888999999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHh------
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF------ 213 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~------ 213 (330)
+|...+..+++.+|++|+|+|++++...++...|..+...++| +++|+||+|+...+ . +.+.+++++.+..
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~-~-~~~~~~l~~~l~~~~~~~~ 165 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIAFANKMDKTGAD-L-WLVIRTMQERLGARPVVMQ 165 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC-H-HHHHHHHHHTTCCCEEECE
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCcccCC-H-HHHHHHHHHHhCCCcccee
Confidence 9999999999999999999999999999999999999999999 77899999997632 1 1111122221110
Q ss_pred --------------------------------------------------------------------------------
Q 020176 214 -------------------------------------------------------------------------------- 213 (330)
Q Consensus 214 -------------------------------------------------------------------------------- 213 (330)
T Consensus 166 ~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~ 245 (691)
T 1dar_A 166 LPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245 (691)
T ss_dssp EEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHH
T ss_pred ccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHH
Confidence
Q ss_pred ---cCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC------------------CCCCCeEEEEEE
Q 020176 214 ---YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER------------------QLDKPFLMPIED 272 (330)
Q Consensus 214 ---~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~------------------~~~~~~~~~i~~ 272 (330)
.-..+..+|++++||+++ .|+..||+.+..++|+|.. +.+.|+.++|++
T Consensus 246 ~~~~~~~~~~~Pv~~gSA~~~----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk 315 (691)
T 1dar_A 246 IRKGTIDLKITPVFLGSALKN----------KGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFK 315 (691)
T ss_dssp HHHHHHTTSCEEEEECBGGGT----------BSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEE
T ss_pred HHHHHHhCcEeEEEEeecccC----------cCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEE
Confidence 000112378999999986 4699999999999998864 257899999999
Q ss_pred EEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeC----ceeecEEecCC
Q 020176 273 VFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEVSW 330 (330)
Q Consensus 273 ~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~----~~~~~~a~~g~ 330 (330)
++.++++|+++++||.+|+|++||.|++...+. ..+|..|... .+++++|.||.
T Consensus 316 ~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~----~~~v~~l~~~~g~~~~~v~~~~aGd 373 (691)
T 1dar_A 316 IMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGR----KERVARLLRMHANHREEVEELKAGD 373 (691)
T ss_dssp EEEETTTEEEEEEEEEESEEESSCEEEETTTTE----EEECCEEEEECSSCEEEESEEETTC
T ss_pred EEEcCCCCcEEEEEEeeeeEecCCEEEecCCCc----EEEEceEEEEeCCCceEcceecCCC
Confidence 999999999999999999999999999775443 4666666544 47999999985
No 26
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.98 E-value=7.4e-32 Score=260.32 Aligned_cols=235 Identities=24% Similarity=0.296 Sum_probs=173.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEe--EEEEe----------------ee
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEY----------------ET 125 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~--~~~~~----------------~~ 125 (330)
+.++|+++|++|+|||||+++|++........ .|+|... ....+ +.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~----------------ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~ 67 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREA----------------GGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC--------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccC----------------CceecccCeEEEeechhhhhcccccccccccc
Confidence 45689999999999999999998653321110 1222111 11111 11
Q ss_pred CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh---------
Q 020176 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED--------- 196 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~--------- 196 (330)
....++|||||||.+|...+..+++.+|++|+|+|+++|+..++.+++..+...++| +++|+||+|+...
T Consensus 68 ~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vP-iIVViNKiDl~~~~~~~~~~~~ 146 (594)
T 1g7s_A 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDRIHGWRVHEGRPF 146 (594)
T ss_dssp TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSTTCCCCTTCCH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCe-EEEEecccccccccccccCCch
Confidence 123599999999999988888888999999999999999999999999999999999 8899999999741
Q ss_pred --------HHHHHHHH---HHHHHHHHhcCCC----------CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 197 --------EELLELVE---MELRELLSFYKFP----------GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 197 --------~~~~~~~~---~~~~~~~~~~~~~----------~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+...+.+. .++.+.+...++. ...+|++++||+++ .|+.+|++++..++
T Consensus 147 ~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG----------~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 147 METFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG----------EGIPELLTMLMGLA 216 (594)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC----------CCchhHHHHHHhhc
Confidence 11111122 2333344444442 24579999999997 46888888887655
Q ss_pred CCC-----CCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeC-----------
Q 020176 256 PDP-----ERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----------- 319 (330)
Q Consensus 256 ~~~-----~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~----------- 319 (330)
|.+ ..+.+.|++++|++++.++|.|++++++|.+|+|++||.|++++.+. ...++|++|...
T Consensus 217 ~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~--~~~~rV~~i~~~~~~~elr~~~~ 294 (594)
T 1g7s_A 217 QQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKD--VISTRIRSLLKPRPLEEMRESRK 294 (594)
T ss_dssp HHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSS--EEEEECCEEEEECCCC----CCC
T ss_pred cccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCC--ceeEEEeEEEeccccchhhhccC
Confidence 422 12457899999999999999999999999999999999999987654 346799999753
Q ss_pred -ceeecEEe
Q 020176 320 -KKILDRGE 327 (330)
Q Consensus 320 -~~~~~~a~ 327 (330)
..++++|.
T Consensus 295 ~~~~v~ea~ 303 (594)
T 1g7s_A 295 KFQKVDEVV 303 (594)
T ss_dssp SEEECSEEE
T ss_pred CceEccEEc
Confidence 45788887
No 27
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.98 E-value=4.3e-31 Score=260.27 Aligned_cols=250 Identities=26% Similarity=0.327 Sum_probs=183.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhc---CccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEE---GKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~---g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
...++|+|+|++|+|||||+++|+...... +.... .....|..+.|+.+|+|+......+.+.+..++|||||||.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~-~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHE-GASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccC-CceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 346799999999999999999998532111 10000 01234666777888999988777788888999999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc-----
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY----- 214 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~----- 214 (330)
+|...+..+++.+|++|+|+|+.++...++...|..+...++| +++|+||+|+...+ . +.+.+++++.+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~-~-~~~~~~l~~~l~~~~~~~~ 163 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVP-RIVFVNKMDKLGAN-F-EYSVSTLHDRLQANAAPIQ 163 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC-H-HHHHHHHHHHHCCCEEESE
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCC-EEEEEECCCccccc-h-HHHHHHHHHHhCCCceeEE
Confidence 9999999999999999999999999999999999999999999 77899999998632 1 11222333322110
Q ss_pred ---------------------------C----------------------------------------------------
Q 020176 215 ---------------------------K---------------------------------------------------- 215 (330)
Q Consensus 215 ---------------------------~---------------------------------------------------- 215 (330)
+
T Consensus 164 ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~ 243 (693)
T 2xex_A 164 LPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEA 243 (693)
T ss_dssp EEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHH
T ss_pred eecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHH
Confidence 0
Q ss_pred -----CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC--------------------CCCCCeEEEE
Q 020176 216 -----FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER--------------------QLDKPFLMPI 270 (330)
Q Consensus 216 -----~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~--------------------~~~~~~~~~i 270 (330)
..+..+|++++||+++ .|+..||+.+..++|+|.. +.+.||.++|
T Consensus 244 l~~~~~~~~~~Pv~~gSA~~~----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~V 313 (693)
T 2xex_A 244 IRQATTNVEFYPVLCGTAFKN----------KGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALA 313 (693)
T ss_dssp HHHHHHTTSCEEEEECBTTTT----------BSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEE
T ss_pred HHHHHHhCCeeeEEEeecccC----------cCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEE
Confidence 0012268999999886 4689999999999998854 2578999999
Q ss_pred EEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc----eeecEEecCC
Q 020176 271 EDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 271 ~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
++++.++++|++.++||.+|+|+.||+|++...+ ...+|.+|...+ +++++|.||.
T Consensus 314 fK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~----~~~~v~~l~~~~g~~~~~v~~~~aGd 373 (693)
T 2xex_A 314 FKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKG----KRERVGRLLQMHANSRQEIDTVYSGD 373 (693)
T ss_dssp EEEEEETTTEEEEEEEEEESEEETTEEEEETTTT----EEEEECCEEEECSSCEEECSEEETTC
T ss_pred EEeeecCCCceEEEEEEEeeeEecCCEEEecCCC----ceEEeceEEEEeCCCceEccccCcCC
Confidence 9999999999999999999999999999976543 367888876554 6899999985
No 28
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.98 E-value=4.9e-33 Score=262.43 Aligned_cols=228 Identities=31% Similarity=0.338 Sum_probs=178.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
+.++|+++|++|+|||||+++|.+.....+. .+|+|.+.....+..++..++|||||||++|..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e----------------~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~ 66 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE----------------AGGITQHIGAYHVETENGMITFLDTPGHAAFTS 66 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT----------------BCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcccc----------------CCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH
Confidence 4568999999999999999999864332221 135666555555666677899999999999999
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC----CC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP----GD 219 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 219 (330)
.+..++..+|++++|+|++++...++.+++..+...++| +++++||+|+..... + ++...+...++. +.
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~--~----~v~~~l~~~~~~~~~~~~ 139 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADP--D----RVKNELSQYGILPEEWGG 139 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCC--C----CTTCCCCCCCCCTTCCSS
T ss_pred HHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEeccccccCH--H----HHHHHHHHhhhhHHHhCC
Confidence 988899999999999999999999999999999999999 889999999975210 0 111111111111 12
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhhC--CCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCE
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI--PDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE 297 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~--~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~ 297 (330)
.+|++++||+++ .++.+|++++.... +.+..+.+.|+.+.|++++.++++|++++|+|.+|+|++||.
T Consensus 140 ~~~~v~vSAktG----------~gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~ 209 (501)
T 1zo1_I 140 ESQFVHVSAKAG----------TGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDI 209 (501)
T ss_dssp SCEEEECCTTTC----------TTCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCE
T ss_pred CccEEEEeeeec----------cCcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCE
Confidence 479999999997 35778888887542 233445678899999999999999999999999999999999
Q ss_pred EEEecCCCCCCceEEEEEEEe-CceeecEEecCC
Q 020176 298 VEVLGLTQGPSLKTTVTGVEM-FKKILDRGEVSW 330 (330)
Q Consensus 298 v~~~~~~~~~~~~~~v~si~~-~~~~~~~a~~g~ 330 (330)
|++++. ..+|++|+. ++.++++|.||+
T Consensus 210 v~~g~~------~~kVr~i~~~~g~~v~~a~~g~ 237 (501)
T 1zo1_I 210 VLCGFE------YGRVRAMRNELGQEVLEAGPSI 237 (501)
T ss_dssp EEEEBS------SCEEEEECCTTTTSEEEECCSS
T ss_pred EEEccc------eeEEEEEEecCCCcCcEeccCC
Confidence 987542 479999986 457999999884
No 29
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.98 E-value=4.2e-31 Score=259.45 Aligned_cols=247 Identities=23% Similarity=0.286 Sum_probs=195.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHh---cCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAE---EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
.+..+|+|+|++|+|||||+++|++.... .|.. .......+..+.++.+++++......+......++|||||||.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 34579999999999999999999864321 1211 0111235667778888999888877787888999999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH-------
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS------- 212 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~------- 212 (330)
+|...+..+++.+|++++|+|+.++...++.+++..+...++| +++|+||+|+. .. .+.+.+++.+.+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~~--~~~~~~~l~~~l~~~~~~~~ 161 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLP-RMVVVTKLDKG-GD--YYALLEDLRSTLGPILPIDL 161 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECGGGC-CC--HHHHHHHHHHHHCSEEECEE
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCC-EEEEecCCchh-hh--HHHHHHHHHHHhCCcceEEe
Confidence 9999999999999999999999999999999999999999999 77899999986 21 1111222222211
Q ss_pred ------------------------------------------------------------hc--C---------------
Q 020176 213 ------------------------------------------------------------FY--K--------------- 215 (330)
Q Consensus 213 ------------------------------------------------------------~~--~--------------- 215 (330)
.+ +
T Consensus 162 Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~ 241 (665)
T 2dy1_A 162 PLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEA 241 (665)
T ss_dssp EEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred eecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 00 0
Q ss_pred -CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCCC-CCCCeEEEEEEEEeeCCCceEEEEEEEeeeee
Q 020176 216 -FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQ-LDKPFLMPIEDVFSIQGRGTVATGRVEQGTIK 293 (330)
Q Consensus 216 -~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~~-~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~ 293 (330)
..+..+|++++||+++ .|+..||+++..++|+|... .+.|+.++|++++.++++|++++|||.+|+|+
T Consensus 242 ~~~~~~~pv~~~SA~~~----------~Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~ 311 (665)
T 2dy1_A 242 VRRGLLYPVALASGERE----------IGVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLK 311 (665)
T ss_dssp HHTTSCEEEEECBTTTT----------BSHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEEC
T ss_pred HHhCCeeEEEEeecccC----------cCHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEe
Confidence 0112379999999987 46999999999999987644 67899999999999999999999999999999
Q ss_pred cCCEEEEecCCCCCCceEEEEEEEeC----ceeecEEecCC
Q 020176 294 VGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEVSW 330 (330)
Q Consensus 294 ~g~~v~~~~~~~~~~~~~~v~si~~~----~~~~~~a~~g~ 330 (330)
+||.|++.+ ...+|.+|... ++++++|.||.
T Consensus 312 ~g~~v~~~~------~~~~v~~l~~~~g~~~~~v~~a~aG~ 346 (665)
T 2dy1_A 312 PGDSLQSEA------GQVRLPHLYVPMGKDLLEVEEAEAGF 346 (665)
T ss_dssp TTEEEBCTT------SCEEESSEEEEETTEEEEESCEETTC
T ss_pred cCCEEEcCC------CeEEEeEEEEEeCCCeeECCEECCCC
Confidence 999998765 25788888764 46999999985
No 30
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.98 E-value=1.1e-33 Score=268.84 Aligned_cols=231 Identities=27% Similarity=0.305 Sum_probs=175.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee-CCeeEEEEeCCCchhhHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-AKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~i~iiDtPG~~~~~~ 143 (330)
.++|+++|++|+|||||+++|++....... .+|+|.+.....+.. .+..++|||||||++|..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~----------------~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~ 67 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAME----------------AGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA 67 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSS----------------SCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccc----------------CCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH
Confidence 457999999999999999999865443322 124444443333333 346799999999999999
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccE
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPI 223 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 223 (330)
.+..++..+|++++|+|++++...++.+++..+...++| +++|+||+|+.+... +.+..++.++.......+..+|+
T Consensus 68 ~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~--~~v~~~l~~~~~~~e~~~~~~~i 144 (537)
T 3izy_P 68 MRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKAEADP--EKVKKELLAYDVVCEDYGGDVQA 144 (537)
T ss_dssp SBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSC--CSSSSHHHHTTSCCCCSSSSEEE
T ss_pred HHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEecccccccch--HHHHHHHHhhhhhHHhcCCCceE
Confidence 999999999999999999999999999999999999999 889999999975210 01111221110001111235799
Q ss_pred EEeeccccccCCccccchhhHHHHHHHHhhhCC--CCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEe
Q 020176 224 IRGSATSALQGKNEEIGKKAILKLMDAVDEYIP--DPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVL 301 (330)
Q Consensus 224 ~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~ 301 (330)
+++||+++ .++.+|++++...++ .+..+.+.|++++|++++.+++.|+|++|+|.+|+|++||.+..+
T Consensus 145 v~vSAktG----------~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~g 214 (537)
T 3izy_P 145 VHVSALTG----------ENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAG 214 (537)
T ss_dssp CCCCSSSS----------CSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECCS
T ss_pred EEEECCCC----------CCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEeC
Confidence 99999997 346777777766533 344567889999999999999999999999999999999998432
Q ss_pred cCCCCCCceEEEEEEEeCc-eeecEEecCC
Q 020176 302 GLTQGPSLKTTVTGVEMFK-KILDRGEVSW 330 (330)
Q Consensus 302 ~~~~~~~~~~~v~si~~~~-~~~~~a~~g~ 330 (330)
. ...+|++|+.++ +++++|.||+
T Consensus 215 ---~---~~~kVr~i~~~~g~~v~~A~~G~ 238 (537)
T 3izy_P 215 ---K---SWAKVRLMFDENGRAVNEAYPSM 238 (537)
T ss_dssp ---S---CCEEEEEEEECCCCCSCCSCCST
T ss_pred ---C---ceEEEEEEEcCCCCCCcEEcCCC
Confidence 1 258999999987 7999999985
No 31
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.96 E-value=2.4e-28 Score=245.23 Aligned_cols=268 Identities=24% Similarity=0.324 Sum_probs=182.9
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC---------------
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA--------------- 126 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~--------------- 126 (330)
....+||+|+|++|+|||||+++|+.................|....|+.+|+|+......+.+.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 45678999999999999999999985421110000111134566777888999987655443332
Q ss_pred -CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC------hHHH
Q 020176 127 -KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE------DEEL 199 (330)
Q Consensus 127 -~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~------~~~~ 199 (330)
+..++|||||||.+|...+..+++.+|++|+|+|+.++...++...|..+...++| +++|+||+|+.. .++.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~ilviNK~D~~~~e~~~~~~e~ 174 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIK-PVVVINKVDRALLELQVSKEDL 174 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCE-EEEEEECHHHHHHTSCCCHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-eEEEEECCCcchhhhccCHHHH
Confidence 57899999999999999999999999999999999999999999999888888999 778999999873 2232
Q ss_pred H---HHHHHHHHHHHHhc-----C---CCCCCccEEEeecccccc--------------------------CCc------
Q 020176 200 L---ELVEMELRELLSFY-----K---FPGDEIPIIRGSATSALQ--------------------------GKN------ 236 (330)
Q Consensus 200 ~---~~~~~~~~~~~~~~-----~---~~~~~~pv~~~Sa~~~~~--------------------------g~~------ 236 (330)
. +...++++..+..+ + +.+...++...|++.++. |++
T Consensus 175 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~ 254 (842)
T 1n0u_A 175 YQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKT 254 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTT
T ss_pred HHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCC
Confidence 2 22333444444332 1 222234677788865421 000
Q ss_pred --c------ccch---------------------------------hh----------------------------HHHH
Q 020176 237 --E------EIGK---------------------------------KA----------------------------ILKL 247 (330)
Q Consensus 237 --~------~~~~---------------------------------~~----------------------------i~~l 247 (330)
. .... ++ +..|
T Consensus 255 ~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~L 334 (842)
T 1n0u_A 255 KKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADAL 334 (842)
T ss_dssp TEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHH
T ss_pred CeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHH
Confidence 0 0000 00 3788
Q ss_pred HHHHhhhCCCCCC-------------------------CCCCCeEEEEEEEEeeCCCce-EEEEEEEeeeeecCCEEEEe
Q 020176 248 MDAVDEYIPDPER-------------------------QLDKPFLMPIEDVFSIQGRGT-VATGRVEQGTIKVGEEVEVL 301 (330)
Q Consensus 248 l~~l~~~~~~~~~-------------------------~~~~~~~~~i~~~~~~~~~G~-v~~g~v~~G~l~~g~~v~~~ 301 (330)
|+.+..++|+|.. +.+.|+.++|++++..+++|+ +.++||.+|+|+.||.|++.
T Consensus 335 Ld~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~ 414 (842)
T 1n0u_A 335 LEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQ 414 (842)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEE
T ss_pred HHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEec
Confidence 9999999998841 457899999999999999995 99999999999999999876
Q ss_pred cCCC--CCC---ceEEEEEEEeCc----eeecEEecCC
Q 020176 302 GLTQ--GPS---LKTTVTGVEMFK----KILDRGEVSW 330 (330)
Q Consensus 302 ~~~~--~~~---~~~~v~si~~~~----~~~~~a~~g~ 330 (330)
..+. +.. ...+|.+|...+ +++++|.||.
T Consensus 415 ~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGd 452 (842)
T 1n0u_A 415 GPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGN 452 (842)
T ss_dssp CTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTC
T ss_pred cccccCCCCcccceEEeeeeEeeccCcccccceeCCCC
Confidence 4331 111 257788877663 7999999985
No 32
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.88 E-value=9.8e-22 Score=175.35 Aligned_cols=158 Identities=20% Similarity=0.193 Sum_probs=113.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh--
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD-- 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~-- 140 (330)
.+..+|+++|++|+|||||+|+|++ ......+. ..++|.......+...+.+++||||||+.+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g------~~~~ivs~---------~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~ 69 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLG------VKVAPISP---------RPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHT------SCCSCCCS---------SSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhC------CceeeecC---------CCCceeEEEEEEEEeCCcEEEEecCccccchh
Confidence 3456899999999999999999993 22221111 113333322233445678999999999766
Q ss_pred ------hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH
Q 020176 141 ------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (330)
Q Consensus 141 ------~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~ 212 (330)
|......+++.+|++++|+|++++....+...+..+... ++| +++|+||+|+...... +.+.+.++
T Consensus 70 ~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p-~ilV~NK~Dl~~~~~~---~~~~~~~~-- 143 (301)
T 1wf3_A 70 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKLDAAKYPEE---AMKAYHEL-- 143 (301)
T ss_dssp SHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECGGGCSSHHH---HHHHHHHT--
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCC-EEEEEECcccCCchHH---HHHHHHHh--
Confidence 666777888999999999999988777776666777666 788 8899999999875430 12222222
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
. ...+++++||+++ .++.++++.+...+|
T Consensus 144 -~----~~~~~~~iSA~~g----------~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 144 -L----PEAEPRMLSALDE----------RQVAELKADLLALMP 172 (301)
T ss_dssp -S----TTSEEEECCTTCH----------HHHHHHHHHHHTTCC
T ss_pred -c----CcCcEEEEeCCCC----------CCHHHHHHHHHHhcc
Confidence 2 2257999999987 579999999988775
No 33
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.88 E-value=2.7e-22 Score=165.31 Aligned_cols=165 Identities=15% Similarity=0.180 Sum_probs=112.6
Q ss_pred cCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 60 ~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
......++|+++|.+|+|||||+++|++....... ....+.+.......+......+.||||||+.
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ--------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTS--------------CCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcC--------------CCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence 34456789999999999999999999853111000 0111333333333344345689999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
+|...+..+++.+|++++|+|+++... .....++..+... ++| +++|+||+|+....+. ..+++.++.+..+
T Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~---~~~~~~~~~~~~~ 148 (181)
T 2efe_B 73 RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKSDLLDARKV---TAEDAQTYAQENG 148 (181)
T ss_dssp GGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCS---CHHHHHHHHHHTT
T ss_pred hhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccccC---CHHHHHHHHHHcC
Confidence 998888888999999999999987443 2334444555544 556 8899999999753211 1224455565554
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
++++++||+++ .++.++++++.+.++.
T Consensus 149 -----~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 149 -----LFFMETSAKTA----------TNVKEIFYEIARRLPR 175 (181)
T ss_dssp -----CEEEECCSSSC----------TTHHHHHHHHHHTCC-
T ss_pred -----CEEEEEECCCC----------CCHHHHHHHHHHHHHh
Confidence 68999999997 5699999999887764
No 34
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.88 E-value=5.5e-22 Score=169.31 Aligned_cols=171 Identities=18% Similarity=0.205 Sum_probs=116.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee-eCCeeEEEEeCCCc---
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-TAKRHYAHVDCPGH--- 138 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~i~iiDtPG~--- 138 (330)
...++|+++|.+|+|||||+|+|++.. ..... ....++|.......+. ..+..+.||||||+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~-----~~~~~---------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQK-----RLAFA---------SKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYA 92 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCS-----SSSCT---------TCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC-----cceee---------cCCCCcccceEEEEecCCCCCcEEEEcCCCCCcc
Confidence 345799999999999999999998421 01111 1122455555444444 45678999999995
Q ss_pred -------hhhHHHHHHhhh---ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHH
Q 020176 139 -------ADYVKNMITGAA---QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELR 208 (330)
Q Consensus 139 -------~~~~~~~~~~~~---~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~ 208 (330)
+.|...+..++. .+|++++|+|+.++.......++..+...++| +++|+||+|+....+..+ ..+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~Dl~~~~~~~~-~~~~~~ 170 (223)
T 4dhe_A 93 EVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKP-IHSLLTKCDKLTRQESIN-ALRATQ 170 (223)
T ss_dssp CCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCC-EEEEEECGGGSCHHHHHH-HHHHHH
T ss_pred cCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEeccccCChhhHHH-HHHHHH
Confidence 333333334444 48889999999998888888888888888889 889999999998554322 223444
Q ss_pred HHHHhc---CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCCC
Q 020176 209 ELLSFY---KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER 260 (330)
Q Consensus 209 ~~~~~~---~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~~ 260 (330)
+.+..+ +. ....+++++||+++ .++.+++++|.+.++.+..
T Consensus 171 ~~l~~~~~~~~-~~~~~~~~~SA~~g----------~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 171 KSLDAYRDAGY-AGKLTVQLFSALKR----------TGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp HHHHHHHHHTC-CSCEEEEEEBTTTT----------BSHHHHHHHHHHHHC----
T ss_pred HHHHhhhhccc-CCCCeEEEeecCCC----------cCHHHHHHHHHHhcCccCC
Confidence 444432 10 13478999999997 4699999999888875543
No 35
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.88 E-value=1.1e-21 Score=175.77 Aligned_cols=164 Identities=18% Similarity=0.238 Sum_probs=119.7
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC-CeeEEEEeCCCch
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHA 139 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~ 139 (330)
...+.-.|+++|.+|+|||||+|+|++ ......+ ...++|.......+... +.+++||||||+.
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g------~~~~i~s---------~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~ 70 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLG------TKVSIIS---------PKAGTTRMRVLGVKNIPNEAQIIFLDTPGIY 70 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHT------SCCSCCC---------SSSCCCCSCEEEEEEETTTEEEEEEECCCCC
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhC------CCccccC---------CCCCceeeEEEEEEecCCCCeEEEEECcCCC
Confidence 345567899999999999999999983 3222111 12345555555555666 8899999999984
Q ss_pred h----------hHHHHHHhhhccCeEEEEEeCCCCCchhhHHH-HHHHHHcCCCeEEEEEeeccCc-ChHHHHHHHHHHH
Q 020176 140 D----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEH-ILLARQVGVPSLVCFLNKVDLV-EDEELLELVEMEL 207 (330)
Q Consensus 140 ~----------~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~-l~~~~~~~~p~iivviNK~D~~-~~~~~~~~~~~~~ 207 (330)
+ +...+..++..+|++++|+|++++...++... +..+...++| +++|+||+|+. +.... .+.+
T Consensus 71 ~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~p-vilV~NK~Dl~~~~~~~----~~~~ 145 (308)
T 3iev_A 71 EPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKP-VIVVINKIDKIGPAKNV----LPLI 145 (308)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCC-EEEEEECGGGSSSGGGG----HHHH
T ss_pred ccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCC-EEEEEECccCCCCHHHH----HHHH
Confidence 3 45667788889999999999999888887777 6777777888 88999999998 43322 2233
Q ss_pred HHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 208 RELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 208 ~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
..+.+.++ ...+++++||+++ .++.+|++.+...++.
T Consensus 146 ~~l~~~~~---~~~~i~~vSA~~g----------~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 146 DEIHKKHP---ELTEIVPISALKG----------ANLDELVKTILKYLPE 182 (308)
T ss_dssp HHHHHHCT---TCCCEEECBTTTT----------BSHHHHHHHHHHHSCB
T ss_pred HHHHHhcc---CCCeEEEEeCCCC----------CCHHHHHHHHHHhCcc
Confidence 44444443 2368999999997 4689999999888764
No 36
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.87 E-value=2e-21 Score=156.79 Aligned_cols=153 Identities=22% Similarity=0.218 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh-----
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD----- 140 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~----- 140 (330)
++|+++|.+|+|||||+++|.+... .. .....+++.......+...+..+.+|||||+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~------~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 66 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRS------AV---------VADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWE 66 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEETTEEEEEEECGGGCSSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCe------ee---------ccCCCCceecceEEEEEeCCceEEEEECCCCCCccchH
Confidence 5899999999999999999984310 00 011223444444455566678899999999876
Q ss_pred --hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 141 --YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 141 --~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
+...+...+..+|++++|+|++++...........+...++| +++|+||+|+.+.+ ++..++. .++.
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~-------~~~~~~~-~~~~-- 135 (161)
T 2dyk_A 67 KKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDDPKHE-------LYLGPLY-GLGF-- 135 (161)
T ss_dssp HHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCSGGGG-------GGCGGGG-GGSS--
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECcccccch-------HhHHHHH-hCCC--
Confidence 456667778899999999999988776666666777777888 88999999998642 1222333 3333
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
.+++++||+++ .++.++++++.+.+|
T Consensus 136 --~~~~~~Sa~~~----------~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 136 --GDPIPTSSEHA----------RGLEELLEAIWERLP 161 (161)
T ss_dssp --CSCEECBTTTT----------BSHHHHHHHHHHHCC
T ss_pred --CCeEEEecccC----------CChHHHHHHHHHhCc
Confidence 37999999997 468999999887764
No 37
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.2e-21 Score=163.46 Aligned_cols=162 Identities=15% Similarity=0.145 Sum_probs=114.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|++...... .....|.+.......+......+.||||||+++|.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 86 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHN--------------ISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH 86 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTT--------------CCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCC--------------cCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH
Confidence 5578999999999999999999985311100 01112444444445555556789999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..+..+++.+|++++|+|+++..... ...++..+... ++| +++|+||+|+.+..+. ..+++.++++.++
T Consensus 87 ~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~v---~~~~~~~~~~~~~--- 159 (192)
T 2fg5_A 87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV-MAIAGNKCDLSDIREV---PLKDAKEYAESIG--- 159 (192)
T ss_dssp GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHTTT---
T ss_pred hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcC---
Confidence 88888899999999999998754322 23344444443 566 8899999999753211 1234555666554
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
++++++||+++ .++.++++++.+.++.
T Consensus 160 --~~~~~~Sa~~~----------~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 160 --AIVVETSAKNA----------INIEELFQGISRQIPP 186 (192)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHTCC-
T ss_pred --CEEEEEeCCCC----------cCHHHHHHHHHHHHHh
Confidence 68999999997 4699999999887753
No 38
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=7.9e-22 Score=160.46 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=109.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
+.++|+++|++|+|||||+++|++....... ....+.+.......++.....+.+|||||++++..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 67 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENK--------------EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS 67 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--------------CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------CCccceeEEEEEEEECCEEEEEEEEECCCChhhhh
Confidence 4579999999999999999999853111000 01113333333344443445799999999999988
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
.+..+++.+|++++|+|+++...... ..++..+... ++| +++|+||+|+.......+...++..++.+..+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~---- 142 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKIDXLQEGGERKVAREEGEKLAEEKG---- 142 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT----
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCccccccccCCCHHHHHHHHHHcC----
Confidence 88888999999999999987433222 2333333332 566 88999999997531100111223444555544
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++++||+++ .++.++++++.+.++
T Consensus 143 -~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 143 -LLFFETSAKTG----------ENVNDVFLGIGEKIP 168 (170)
T ss_dssp -CEEEECCTTTC----------TTHHHHHHHHHTTSC
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHHHHh
Confidence 58999999997 469999999987664
No 39
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.86 E-value=2.4e-21 Score=157.58 Aligned_cols=161 Identities=16% Similarity=0.148 Sum_probs=110.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|++...... .....+.+.......++.....+.+|||||+.+|.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 69 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEF--------------QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 69 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTT--------------CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh
Confidence 4568999999999999999999985311100 00112333433444444445689999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..+..++..+|++++|+|+++.... ....++..+... ++| +++|+||+|+...... ..++..++.+..+
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 142 (170)
T 1r2q_A 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV-IALSGNKADLANKRAV---DFQEAQSYADDNS--- 142 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHHTT---
T ss_pred hhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCcccccc---CHHHHHHHHHHcC---
Confidence 8888889999999999999874332 223344444443 455 7788999999753211 1123444555544
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++++||+++ .++.++++++.+.++
T Consensus 143 --~~~~~~Sa~~g----------~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 143 --LLFMETSAKTS----------MNVNEIFMAIAKKLP 168 (170)
T ss_dssp --CEEEECCTTTC----------TTHHHHHHHHHHTSC
T ss_pred --CeEEEEeCCCC----------CCHHHHHHHHHHHHh
Confidence 68999999997 569999999988765
No 40
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.86 E-value=3.3e-22 Score=164.29 Aligned_cols=160 Identities=31% Similarity=0.387 Sum_probs=112.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|++....... ..+++.......+...+..+.+|||||+++|.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 69 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQE----------------AGGITQHIGAYQVTVNDKKITFLDTPGHEAFT 69 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSS----------------CCSSSTTCCCCEEEETTEEEEESCCCSSSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCC----------------CCceeEeeeEEEEEeCCceEEEEECCCCHHHH
Confidence 34579999999999999999999843111100 01222222222344567789999999999987
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC----
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG---- 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---- 218 (330)
..+..++..+|++++|+|++++...+..+.+..+...++| +++|+||+|+..... + ++...++......
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~~--~----~~~~~~~~~~~~~~~~~ 142 (178)
T 2lkc_A 70 TMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMDKPEANP--D----RVMQELMEYNLVPEEWG 142 (178)
T ss_dssp CSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTTSSCSCH--H----HHHHHHTTTTCCBTTTT
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECccCCcCCH--H----HHHHHHHhcCcChhHcC
Confidence 7777778889999999999988878888888777777888 889999999986321 1 1222223222111
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
..++++++||+++ .++.++++++...+
T Consensus 143 ~~~~~~~~Sa~~~----------~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 143 GDTIFCKLSAKTK----------EGLDHLLEMILLVS 169 (178)
T ss_dssp SSEEEEECCSSSS----------HHHHHHHHHHHHHH
T ss_pred CcccEEEEecCCC----------CCHHHHHHHHHHhh
Confidence 1368999999997 56888888776643
No 41
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.86 E-value=3.9e-21 Score=157.86 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=108.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee-CCeeEEEEeCCCchhh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-AKRHYAHVDCPGHADY 141 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~i~iiDtPG~~~~ 141 (330)
++.++|+++|.+|+|||||+++|++..... ......+.........+.. ....+.+|||||+++|
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 69 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGK--------------QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIG 69 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTH--------------HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCC--------------CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccc
Confidence 456899999999999999999998532110 0011112222222333322 1368999999999998
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc-----CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV-----GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~-----~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
...+..+++.+|++++|+|+++....+ ...++..+... +.|++++|+||+|+.+.... ..++..++.+..+
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 146 (178)
T 2hxs_A 70 GKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTI---KPEKHLRFCQENG 146 (178)
T ss_dssp CTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS---CHHHHHHHHHHHT
T ss_pred cchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccccc---CHHHHHHHHHHcC
Confidence 888888899999999999998743322 22333444332 66767889999999753211 1123445555554
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++++||+++ .++.++++++.+.+.
T Consensus 147 -----~~~~~~Sa~~~----------~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 147 -----FSSHFVSAKTG----------DSVFLCFQKVAAEIL 172 (178)
T ss_dssp -----CEEEEECTTTC----------TTHHHHHHHHHHHHT
T ss_pred -----CcEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 58999999997 468888988887665
No 42
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.86 E-value=2.9e-21 Score=157.24 Aligned_cols=161 Identities=18% Similarity=0.185 Sum_probs=111.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
.+.++|+++|.+|+|||||+++|++...... .....|.+.......+......+.+|||||++++.
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 69 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPN--------------INPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR 69 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTT--------------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCC--------------CCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh
Confidence 4568999999999999999999985321100 01112444444444454445789999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..+..+++.+|++++|+|+++...... ..++..+... ++| +++|+||+|+.+..+. ..++...+.+..+
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~~v---~~~~~~~~~~~~~--- 142 (170)
T 1z0j_A 70 ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVREV---MERDAKDYADSIH--- 142 (170)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT---
T ss_pred cccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECCcccccccc---CHHHHHHHHHHcC---
Confidence 888888899999999999987543333 3344555443 345 8889999999764221 1223444555544
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++++||+++ .++.++++++.+.++
T Consensus 143 --~~~~~~Sa~~~----------~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 143 --AIFVETSAKNA----------ININELFIEISRRIP 168 (170)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHHCC
T ss_pred --CEEEEEeCCCC----------cCHHHHHHHHHHHHh
Confidence 68999999997 468999999887765
No 43
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.86 E-value=5.4e-21 Score=161.19 Aligned_cols=167 Identities=15% Similarity=0.097 Sum_probs=109.1
Q ss_pred hhhhcCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeE--EEEeeeCCeeEEEE
Q 020176 56 MATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATA--HVEYETAKRHYAHV 133 (330)
Q Consensus 56 ~~~~~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~--~~~~~~~~~~i~ii 133 (330)
+.......+.++|+++|.+|+|||||+++|++...... ...++.... ...++.....+.||
T Consensus 21 m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~l~i~ 83 (204)
T 4gzl_A 21 MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------YIPTVFDNYSANVMVDGKPVNLGLW 83 (204)
T ss_dssp ---------CEEEEEEESTTSSHHHHHHHHHHSCCCC------------------CCCCSEEEEEEEEECC-CEEEEEEE
T ss_pred HHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCC-----------------cCCeecceeEEEEEECCEEEEEEEE
Confidence 43444556779999999999999999999984311100 001122222 22233334566799
Q ss_pred eCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhH--HHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHH-----
Q 020176 134 DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLELVE----- 204 (330)
Q Consensus 134 DtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~--~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~----- 204 (330)
||||+++|...+..+++.+|++++|+|+++....+.. .++..+... ++| +++|+||+|+.......+.+.
T Consensus 84 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~ 162 (204)
T 4gzl_A 84 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLT 162 (204)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred ECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhccchhhhhhhhccccc
Confidence 9999999988888889999999999999875443332 344455544 778 889999999987544332221
Q ss_pred ----HHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 205 ----MELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 205 ----~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++...+.+.++. .|++++||+++ .++.++++++.+.
T Consensus 163 ~v~~~~~~~~~~~~~~----~~~~~~SA~~g----------~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 163 PITYPQGLAMAKEIGA----VKYLECSALTQ----------RGLKTVFDEAIRA 202 (204)
T ss_dssp CCCHHHHHHHHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHT
T ss_pred cccHHHHHHHHHhcCC----cEEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 244556666654 67999999997 4689999888764
No 44
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.86 E-value=3.5e-21 Score=158.11 Aligned_cols=161 Identities=15% Similarity=0.130 Sum_probs=109.9
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
....++|+++|.+|+|||||+++|++...... .....+.+.......++.....+.||||||++++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 77 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD--------------CPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 77 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSS--------------CTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceEEEEEEEEECCeEEEEEEEECCCChHh
Confidence 34568999999999999999999985311100 0011133333334444434467899999999999
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
...+..+++.+|++++|+|+++...... ..++..+.. .++| +++|+||+|+....+. ..+++.++++.++
T Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 151 (179)
T 1z0f_A 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDV---TYEEAKQFAEENG-- 151 (179)
T ss_dssp CHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT--
T ss_pred hhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcC--
Confidence 8888889999999999999987533222 233333433 3566 8899999999753211 1224555666654
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++.+.+
T Consensus 152 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 152 ---LLFLEASAKTG----------ENVEDAFLEAAKKI 176 (179)
T ss_dssp ---CEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 68999999997 46888888876644
No 45
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.86 E-value=2.3e-20 Score=155.37 Aligned_cols=159 Identities=22% Similarity=0.258 Sum_probs=112.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC------
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG------ 137 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG------ 137 (330)
..++|+++|.+|+|||||+++|++. ..... ....+.+....... .+..+.+|||||
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~------~~~~~---------~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~ 83 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR------KIAFV---------SKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKV 83 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS------CCSCC---------CSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC------ccccc---------cCCCCCccCeEEEE---ECCcEEEEECCCCccccC
Confidence 4469999999999999999999842 11100 01123333332222 235689999999
Q ss_pred ----chhhHHHHHHhhh---ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHH
Q 020176 138 ----HADYVKNMITGAA---QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELREL 210 (330)
Q Consensus 138 ----~~~~~~~~~~~~~---~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~ 210 (330)
+..+...+..+++ .+|++++|+|+..+........+..+...++| +++|+||+|+.+..+. +...+++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~-~~~~~~~~~~ 161 (195)
T 3pqc_A 84 SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIP-FTIVLTKMDKVKMSER-AKKLEEHRKV 161 (195)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGH-HHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEEChhcCChHHH-HHHHHHHHHH
Confidence 5555554444444 45999999999888777777777788888899 8899999999875433 3344466666
Q ss_pred HHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 211 ~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+...+. ++++++||+++ .++.++++++.+.++
T Consensus 162 ~~~~~~----~~~~~~Sa~~~----------~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 162 FSKYGE----YTIIPTSSVTG----------EGISELLDLISTLLK 193 (195)
T ss_dssp HHSSCC----SCEEECCTTTC----------TTHHHHHHHHHHHHC
T ss_pred HhhcCC----CceEEEecCCC----------CCHHHHHHHHHHHhh
Confidence 665442 78999999997 468999998887654
No 46
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.86 E-value=1.4e-20 Score=157.05 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=107.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC-----
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG----- 137 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG----- 137 (330)
...++|+++|.+|+|||||+|+|++... ... .....+.|.......+ +..+.+|||||
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-----~~~---------~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~ 83 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKN-----LAR---------TSSKPGKTQTLNFYII---NDELHFVDVPGYGFAK 83 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEEEE---TTTEEEEECCCBCCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-----ccc---------cCCCCCceeeEEEEEE---CCcEEEEECCCCCccc
Confidence 3457999999999999999999984311 000 0111234443333322 24799999999
Q ss_pred -----chhhHHHHHHhhhcc---CeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHH
Q 020176 138 -----HADYVKNMITGAAQM---DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRE 209 (330)
Q Consensus 138 -----~~~~~~~~~~~~~~~---d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~ 209 (330)
++.|...+..++..+ |++++|+|++++......+.+..+...++| +++|+||+|+.+..+... ..+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~-~~~~~~~ 161 (195)
T 1svi_A 84 VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIP-VIVIATKADKIPKGKWDK-HAKVVRQ 161 (195)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGHHH-HHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCChHHHHH-HHHHHHH
Confidence 666666666666555 999999999988777777777777778888 889999999987543322 2223433
Q ss_pred HHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 210 LLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 210 ~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
.+. . ....+++++||+++ .++.++++++.+.+
T Consensus 162 ~~~---~-~~~~~~~~~Sa~~~----------~gv~~l~~~l~~~l 193 (195)
T 1svi_A 162 TLN---I-DPEDELILFSSETK----------KGKDEAWGAIKKMI 193 (195)
T ss_dssp HHT---C-CTTSEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHc---c-cCCCceEEEEccCC----------CCHHHHHHHHHHHh
Confidence 332 1 13478999999987 46888888887654
No 47
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.86 E-value=6.3e-21 Score=157.64 Aligned_cols=166 Identities=16% Similarity=0.117 Sum_probs=110.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
+..++|+++|++|+|||||+++|++......... ..+... .....++.....+.||||||+++|.
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~--------------t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 67 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP--------------TVFDNY-SANVMVDGKPVNLGLWDTAGQEDYD 67 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCC--------------CSCCEE-EEEEEETTEEEEEEEECCCCSGGGT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCC--------------ccccee-EEEEEECCEEEEEEEEECCCCHhHH
Confidence 4568999999999999999999985321100000 001111 1122233334567899999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhH--HHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHH---------HHHHH
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLELVE---------MELRE 209 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~--~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~---------~~~~~ 209 (330)
..+..+++.+|++++|+|+++....+.. .++..+... ++| +++|+||+|+.+.....+.+. ++..+
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEcccccccchhhhhhcccccccCCHHHHHH
Confidence 7777788899999999999874333332 244444444 678 889999999986543322221 23445
Q ss_pred HHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 210 LLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 210 ~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
+.+.++. .+++++||+++ .++.++++++.+.+..+
T Consensus 147 ~~~~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 147 MAKEIGA----VKYLECSALTQ----------RGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp HHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHHHSCC
T ss_pred HHHhcCC----cEEEEecCCCc----------cCHHHHHHHHHHHHhcc
Confidence 5555543 58999999997 46899999888776543
No 48
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.85 E-value=8.4e-21 Score=155.71 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=106.3
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (330)
+....++|+++|.+|+|||||+++|++..... ......+.+.......++.....+.||||||+++
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDT--------------QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC------------------CCSEEEEEEEEEETTEEEEEEEEECCCCGG
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 34567899999999999999999998431110 0001112222222333332335789999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH-------cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ-------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~-------~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~ 212 (330)
+...+..++..+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+..... ..+++.++.+
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~----~~~~~~~~~~ 143 (177)
T 1wms_A 69 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDISERQV----STEEAQAWCR 143 (177)
T ss_dssp GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCSSCSS----CHHHHHHHHH
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCccccccc----CHHHHHHHHH
Confidence 99988889999999999999987433222 223333322 4567 889999999974221 1123444444
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
.. ..++++++||+++ .++.++++++.+.+
T Consensus 144 ~~----~~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 144 DN----GDYPYFETSAKDA----------TNVAAAFEEAVRRV 172 (177)
T ss_dssp HT----TCCCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred hc----CCceEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 32 2378999999987 46888888877654
No 49
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.85 E-value=4.7e-21 Score=159.93 Aligned_cols=161 Identities=17% Similarity=0.141 Sum_probs=105.9
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
....++|+++|.+|+|||||+++|++....... ....+.+.......++.....+.||||||+++|
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 88 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEAC--------------KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 88 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC----------------------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCC--------------CCccceeEEEEEEEECCeEEEEEEEeCCCcHHH
Confidence 355689999999999999999999843211100 001122333333333333357899999999999
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
...+..+++.+|++++|+|+++....+. ..++..+... ++| +++|+||+|+....+. ..++..++.+.+.
T Consensus 89 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~~~~~v---~~~~~~~~~~~~~-- 162 (192)
T 2il1_A 89 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREI---TRQQGEKFAQQIT-- 162 (192)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHTST--
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc---CHHHHHHHHHhcC--
Confidence 9988999999999999999987543333 3333444443 566 8899999999753221 1123445555432
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.++++++||+++ .++.++++++.+.
T Consensus 163 --~~~~~~~SA~~g----------~gi~~l~~~l~~~ 187 (192)
T 2il1_A 163 --GMRFCEASAKDN----------FNVDEIFLKLVDD 187 (192)
T ss_dssp --TCEEEECBTTTT----------BSHHHHHHHHHHH
T ss_pred --CCeEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 378999999986 3577777777654
No 50
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.85 E-value=4.2e-21 Score=157.63 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=107.3
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC--CeeEEEEeCCCch
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA--KRHYAHVDCPGHA 139 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~--~~~i~iiDtPG~~ 139 (330)
..+.++|+++|++|+|||||+++|++...... ....++.+.....+... ...+.||||||++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNT----------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSS----------------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 34568999999999999999999984211100 01122323322223333 3578999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
++...+..++..+|++++|+|+++... .....++..+.. .++| +++|+||+|+.+..+. ..++...+.+..+
T Consensus 75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 150 (179)
T 2y8e_A 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQV---STEEGERKAKELN 150 (179)
T ss_dssp GGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECGGGGGGCCS---CHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccCcC---CHHHHHHHHHHcC
Confidence 998888888899999999999987432 222333333332 2566 8899999999753221 1123344444444
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++++||+++ .++.++++++.+.++
T Consensus 151 -----~~~~~~Sa~~~----------~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 151 -----VMFIETSAKAG----------YNVKQLFRRVAAALP 176 (179)
T ss_dssp -----CEEEEEBTTTT----------BSHHHHHHHHHHTCC
T ss_pred -----CeEEEEeCCCC----------CCHHHHHHHHHHHHh
Confidence 68999999997 468999999988765
No 51
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.85 E-value=1.3e-20 Score=156.59 Aligned_cols=161 Identities=17% Similarity=0.111 Sum_probs=109.3
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
.++.++|+++|.+|+|||||+++|++...... ...|+......+...+..+.||||||+++|
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNED------------------MIPTVGFNMRKITKGNVTIKLWDIGGQPRF 80 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCS------------------CCCCCSEEEEEEEETTEEEEEEEECCSHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCc------------------cCCCCceeEEEEEeCCEEEEEEECCCCHhH
Confidence 35678999999999999999999985311100 011222222335566789999999999999
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
...+..++..+|++++|+|+++.... ...+++..+.. .++| +++|+||+|+....+. + ++.+.+.....
T Consensus 81 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~~~~~~~~~~~ 154 (188)
T 1zd9_A 81 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPGALDE-K----ELIEKMNLSAI 154 (188)
T ss_dssp HTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCCCH-H----HHHHHTTGGGC
T ss_pred HHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCccCCCH-H----HHHHHhChhhh
Confidence 88888889999999999999874332 22333333332 4677 8899999999863211 1 12222221112
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
....++++++||+++ .++.++++++.+.+.
T Consensus 155 ~~~~~~~~~~SA~~g----------~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 155 QDREICCYSISCKEK----------DNIDITLQWLIQHSK 184 (188)
T ss_dssp CSSCEEEEECCTTTC----------TTHHHHHHHHHHTCC
T ss_pred ccCCeeEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 224578999999997 469999999988764
No 52
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.85 E-value=7.7e-21 Score=153.98 Aligned_cols=157 Identities=21% Similarity=0.156 Sum_probs=103.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
+.++|+++|++|+|||||+++|++....... . ...+ +.......++.....+.+|||||++++..
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~---~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 66 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKY-----------D---PTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFAS 66 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCC-----------C---TTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccC-----------C---CCcc-eeEEEEEEECCEEEEEEEEECCCchhhHH
Confidence 4579999999999999999999853111000 0 0001 11122222333335689999999999988
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
.+..++..+|++++|+|+++..... ...++..+.. .++| +++|+||+|+.+..+. ..++..++.+.++
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 139 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESEREV---SSSEGRALAEEWG--- 139 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCCS---CHHHHHHHHHHHT---
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcccccccC---CHHHHHHHHHHhC---
Confidence 8888899999999999998743222 2223333322 3677 8899999998753221 1123444555554
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+|++++||+++ .++.++++++.+.
T Consensus 140 --~~~~~~Sa~~~----------~gi~~l~~~l~~~ 163 (167)
T 1kao_A 140 --CPFMETSAKSK----------TMVDELFAEIVRQ 163 (167)
T ss_dssp --SCEEEECTTCH----------HHHHHHHHHHHHH
T ss_pred --CCEEEecCCCC----------cCHHHHHHHHHHH
Confidence 57999999997 5788888887664
No 53
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=4.4e-21 Score=159.84 Aligned_cols=159 Identities=13% Similarity=0.092 Sum_probs=110.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+|+|.+|+|||||+++|++........ ...+.+.......+......+.||||||+++|.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 86 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFV--------------STVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR 86 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEE--------------EEETTTEEEEEEEETTTTEEEEEECHHHHHHCH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccC--------------CCeeeEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 456899999999999999999998642211110 011444555555555667889999999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..+..+++.+|++++|+|+++... .....++..+.. .++| +++|+||+|+...... ..++...+.+.++
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 159 (191)
T 3dz8_A 87 TITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEERVV---PTEKGQLLAEQLG--- 159 (191)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS---CHHHHHHHHHHHT---
T ss_pred HHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccc---CHHHHHHHHHHcC---
Confidence 999999999999999999987432 223344455544 3566 8899999999753211 1223445555555
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++++++||+++ .++.++++++.+.
T Consensus 160 --~~~~~~Sa~~~----------~gi~~l~~~l~~~ 183 (191)
T 3dz8_A 160 --FDFFEASAKEN----------ISVRQAFERLVDA 183 (191)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHH
T ss_pred --CeEEEEECCCC----------CCHHHHHHHHHHH
Confidence 58999999986 3577777766554
No 54
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=5.4e-21 Score=157.28 Aligned_cols=162 Identities=15% Similarity=0.159 Sum_probs=99.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|++........ ....+.+.......++.....+.+|||||+++|.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-------------~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 74 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-------------ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR 74 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-------------CCCCSCEEEEEEEEETTEEEEEEEEECCCC----
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCc-------------CCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH
Confidence 556899999999999999999998532110000 0001222222222333333578999999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..+..++..+|++++|+|+++...... ..++..+.. .++| +++|+||+|+....+. ..++..++.+.++
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 147 (180)
T 2g6b_A 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA-LMLLGNKVDSAHERVV---KREDGEKLAKEYG--- 147 (180)
T ss_dssp ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECCSTTSCCCS---CHHHHHHHHHHHT---
T ss_pred HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccCccccc---CHHHHHHHHHHcC---
Confidence 888889999999999999987433222 334444443 3566 8899999999863211 1123344455544
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++++||+++ .++.++++++.+.+.
T Consensus 148 --~~~~~~Sa~~~----------~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 148 --LPFMETSAKTG----------LNVDLAFTAIAKELK 173 (180)
T ss_dssp --CCEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred --CeEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 57999999986 457888887776543
No 55
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.85 E-value=1.1e-20 Score=157.20 Aligned_cols=161 Identities=19% Similarity=0.163 Sum_probs=105.8
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEE-eEEEEeeeC---------CeeEE
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIA-TAHVEYETA---------KRHYA 131 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~-~~~~~~~~~---------~~~i~ 131 (330)
....++|+++|.+|+|||||+++|++........ ...+.+.. .....+... ...+.
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFI--------------TTVGIDFREKRVVYRANGPDGAVGRGQRIHLQ 73 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--------------CCCSEEEEEEEEEECTTSCCCSSCCCEEEEEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcc--------------cccceeeeeEEEEEecCCcccccccCcEEEEE
Confidence 3456899999999999999999998532110000 00111111 112222211 35799
Q ss_pred EEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHH
Q 020176 132 HVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEME 206 (330)
Q Consensus 132 iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~ 206 (330)
||||||+++|...+..+++.+|++++|+|+++...... ..++..+.. .++| +++|+||+|+...... ..++
T Consensus 74 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~ 149 (195)
T 3bc1_A 74 LWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQRAV---KEEE 149 (195)
T ss_dssp EEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGGGCCS---CHHH
T ss_pred EEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccc---CHHH
Confidence 99999999999999999999999999999987433332 344444443 3667 8899999999763211 1224
Q ss_pred HHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 207 LRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 207 ~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+.++.+.++ ++++++||+++ .++.++++++...+
T Consensus 150 ~~~~~~~~~-----~~~~~~Sa~~~----------~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 150 ARELAEKYG-----IPYFETSAANG----------TNISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHHHHT-----CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHHcC-----CCEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 455555554 57999999986 35677776665543
No 56
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.85 E-value=4.2e-21 Score=169.28 Aligned_cols=156 Identities=24% Similarity=0.335 Sum_probs=112.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH-
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV- 142 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~- 142 (330)
+.++|+++|++|+|||||+|+|++. .. ... ..+|+|.......+...+..+.||||||+.++.
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~------~~-~v~---------~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 65 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGS------RQ-RVG---------NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTT------CE-EEE---------ECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC------Cc-ccC---------CCCCeeEEEEEEEEEeCCCceEEEECcCCCcccc
Confidence 4579999999999999999999842 21 111 123777777777777778899999999977654
Q ss_pred ---------HHHHH--hhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHH
Q 020176 143 ---------KNMIT--GAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELL 211 (330)
Q Consensus 143 ---------~~~~~--~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~ 211 (330)
..... ....+|++++|+|+++ ......+...+...++| +++|+||+|+...... ......+.
T Consensus 66 ~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p-~ivv~NK~Dl~~~~~~----~~~~~~l~ 138 (274)
T 3i8s_A 66 ISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIP-CIVALNMLDIAEKQNI----RIEIDALS 138 (274)
T ss_dssp ----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCC-EEEEEECHHHHHHTTE----EECHHHHH
T ss_pred ccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCC-EEEEEECccchhhhhH----HHHHHHHH
Confidence 11112 2368999999999986 23445555667778999 8899999998753211 11223344
Q ss_pred HhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 212 ~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
+.++ +|++++||+++ .|+.+|++++.+.++.
T Consensus 139 ~~lg-----~~~i~~SA~~g----------~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 139 ARLG-----CPVIPLVSTRG----------RGIEALKLAIDRYKAN 169 (274)
T ss_dssp HHHT-----SCEEECCCGGG----------HHHHHHHHHHHTCCCC
T ss_pred HhcC-----CCEEEEEcCCC----------CCHHHHHHHHHHHHhc
Confidence 4444 68999999997 6799999999987764
No 57
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.85 E-value=3.5e-21 Score=160.56 Aligned_cols=161 Identities=18% Similarity=0.123 Sum_probs=107.1
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (330)
.....++|+|+|.+|+|||||+++|++....... ....|.+.......+......+.||||||+.+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS--------------RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC--------------CCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--------------CCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 3456789999999999999999999853111000 00113333333344444456789999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
|...+..+++.+|++|+|+|+++..... ...++..+... ++| +++|+||+|+...... ..++...+.+..+
T Consensus 87 ~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~- 161 (193)
T 2oil_A 87 YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIV-VMLVGNKSDLSQAREV---PTEEARMFAENNG- 161 (193)
T ss_dssp TCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHHTT-
T ss_pred hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECCCccccccc---CHHHHHHHHHHcC-
Confidence 8888888889999999999998743322 23344444332 556 8899999999763211 1124445555544
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++++++||+++ .++.++++++.+.
T Consensus 162 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~ 185 (193)
T 2oil_A 162 ----LLFLETSALDS----------TNVELAFETVLKE 185 (193)
T ss_dssp ----CEEEEECTTTC----------TTHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 68999999986 4577777766553
No 58
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=2e-20 Score=175.64 Aligned_cols=148 Identities=22% Similarity=0.320 Sum_probs=105.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc-----
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH----- 138 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~----- 138 (330)
..++|+++|++|+|||||+|+|++ ...... ....|+|.+.....+...+..+.||||||+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~------~~~~~~---------~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 238 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLG------EERVIV---------SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGK 238 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHT------STTEEE---------C---------CCEEEEETTEEEEETTHHHHTCBTT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhC------CCceee---------cCCCCceeeeeEEEEEECCeEEEEEECCCcCcCcc
Confidence 458999999999999999999994 222211 123467777666667777888999999998
Q ss_pred -----hhhHHH-HHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHH-HHHHHHHHHHHHH
Q 020176 139 -----ADYVKN-MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEE-LLELVEMELRELL 211 (330)
Q Consensus 139 -----~~~~~~-~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~-~~~~~~~~~~~~~ 211 (330)
+.|... ...++..+|++++|+|++++...++.+++..+...++| +++|+||+|+.+..+ ..+++.+++.+.+
T Consensus 239 ~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l 317 (436)
T 2hjg_A 239 VYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDHF 317 (436)
T ss_dssp BCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCTTHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCc-EEEEEECccCCCcchHHHHHHHHHHHHhc
Confidence 555433 34577889999999999999999998888888888888 889999999986432 1233444454444
Q ss_pred HhcCCCCCCccEEEeecccc
Q 020176 212 SFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 212 ~~~~~~~~~~pv~~~Sa~~~ 231 (330)
.... .+|++++||+++
T Consensus 318 ~~~~----~~~~~~~SA~tg 333 (436)
T 2hjg_A 318 QFLD----YAPILFMSALTK 333 (436)
T ss_dssp GGGT----TSCEEECCTTTC
T ss_pred ccCC----CCCEEEEecccC
Confidence 4332 379999999985
No 59
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.85 E-value=2.5e-21 Score=161.59 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=108.1
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEE-----EeeeCCeeEEEEeC
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHV-----EYETAKRHYAHVDC 135 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~-----~~~~~~~~i~iiDt 135 (330)
.....++|+++|.+|+|||||++.|.+............ .......|+..... .++.....+.||||
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt 81 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVS--------LATEDERTLFFDFLPLDIGEVKGFKTRFHLYTV 81 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEE--------EECSSCEEEEEEECCSSCCCSSSCEEEEEEEEC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccc--------cccccccceeeeecccccccccCCceEEEEEeC
Confidence 445678999999999999999987764321111000000 00000112211111 22233467899999
Q ss_pred CCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHH---------cCCCeEEEEEeeccCcChHHHHHHHHHH
Q 020176 136 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ---------VGVPSLVCFLNKVDLVEDEELLELVEME 206 (330)
Q Consensus 136 PG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~---------~~~p~iivviNK~D~~~~~~~~~~~~~~ 206 (330)
||+++|...+..+++.+|++|+|+|++++...+..+.+..+.. .++| +++|+||+|+.+.. ..++
T Consensus 82 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~-----~~~~ 155 (198)
T 3t1o_A 82 PGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP-IVIQVNKRDLPDAL-----PVEM 155 (198)
T ss_dssp CSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECTTSTTCC-----CHHH
T ss_pred CChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC-EEEEEEchhccccc-----CHHH
Confidence 9999999989999999999999999986544444444433322 3677 88999999997631 1235
Q ss_pred HHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 207 LRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 207 ~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+.++++..++ .+++++||+++ .++.++++++.+.+
T Consensus 156 ~~~~~~~~~~----~~~~~~Sa~~~----------~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 156 VRAVVDPEGK----FPVLEAVATEG----------KGVFETLKEVSRLV 190 (198)
T ss_dssp HHHHHCTTCC----SCEEECBGGGT----------BTHHHHHHHHHHHH
T ss_pred HHHHHHhcCC----ceEEEEecCCC----------cCHHHHHHHHHHHH
Confidence 5666666553 38999999986 45777777766543
No 60
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.85 E-value=6.7e-21 Score=159.39 Aligned_cols=162 Identities=18% Similarity=0.177 Sum_probs=106.1
Q ss_pred cCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 60 ~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
.......+|+|+|.+|+|||||+++|++...... . ...|+......++.....+.||||||++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-----~------------~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK-----H------------ITATVGYNVETFEKGRVAFTVFDMGGAK 74 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC---------C------------CCCCSSEEEEEEEETTEEEEEEEECCSG
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc-----c------------cccccceeEEEEEeCCEEEEEEECCCCH
Confidence 3445678999999999999999999984211110 0 0011112223345677899999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHHc-----------CCCeEEEEEeeccCcChHHHHHHHHHHH
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV-----------GVPSLVCFLNKVDLVEDEELLELVEMEL 207 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~~-----------~~p~iivviNK~D~~~~~~~~~~~~~~~ 207 (330)
+|...+..+++.+|++|+|+|+++.... ...+++..+... ++| +++|+||+|+...... +.+.+.+
T Consensus 75 ~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~~~~~~~ 152 (199)
T 4bas_A 75 KFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP-FLFFANKMDAAGAKTA-AELVEIL 152 (199)
T ss_dssp GGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEEECTTSTTCCCH-HHHHHHH
T ss_pred hHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC-EEEEEECcCCCCCCCH-HHHHHHh
Confidence 9988888889999999999999875432 233444444332 778 8899999999875221 1122222
Q ss_pred H--HHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 208 R--ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 208 ~--~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
. .+.+. ..++++++||+++ .++.+++++|.+.+
T Consensus 153 ~~~~~~~~-----~~~~~~~~Sa~~g----------~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 153 DLTTLMGD-----HPFVIFASNGLKG----------TGVHEGFSWLQETA 187 (199)
T ss_dssp THHHHHTT-----SCEEEEECBTTTT----------BTHHHHHHHHHHHH
T ss_pred cchhhccC-----CeeEEEEeeCCCc----------cCHHHHHHHHHHHH
Confidence 1 11122 3478999999986 45777777776654
No 61
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=162.07 Aligned_cols=164 Identities=13% Similarity=0.109 Sum_probs=105.4
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
....++|+++|.+|+|||||+++|++..... ......|.+.......++.....+.||||||+++|
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 90 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE--------------NISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF 90 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEEEEEEETTEEEEEEEEECTTCTTC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCc--------------cCCCCccceeEEEEEEECCEEEEEEEEECCCCcch
Confidence 3456899999999999999999998531100 00011133333333444444467999999999999
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH---cCCCeEEEEEeeccCcChHHH---HHHHHHHHHHHHHhc
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEEL---LELVEMELRELLSFY 214 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~---~~~p~iivviNK~D~~~~~~~---~~~~~~~~~~~~~~~ 214 (330)
...+..+++.+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+...... .+...++..++.+.+
T Consensus 91 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~ 169 (199)
T 2p5s_A 91 RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY 169 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccccccccCHHHHHHHHHHc
Confidence 9988889999999999999987543332 333444443 2677 8899999999742110 001122344555555
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+ ++++++||+++ .++.++++++.+.+
T Consensus 170 ~-----~~~~~~SA~~g----------~gv~el~~~l~~~i 195 (199)
T 2p5s_A 170 G-----ALFCETSAKDG----------SNIVEAVLHLAREV 195 (199)
T ss_dssp T-----CEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred C-----CeEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 4 68999999997 45888888887654
No 62
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.85 E-value=1.4e-20 Score=168.09 Aligned_cols=160 Identities=21% Similarity=0.196 Sum_probs=111.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch-hhH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA-DYV 142 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~-~~~ 142 (330)
+..+|+|+|++|+|||||+|+|++ ........ ..++|.......+...+..++|+||||+. +..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g------~~~~i~s~---------~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~ 71 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLG------QKISITSR---------KAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 71 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHT------CSEEECCC---------CSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHC------CCccccCC---------CCCcceeeEEEEEEECCeeEEEEECcCCCccch
Confidence 345899999999999999999994 32222111 11233322223345567899999999987 322
Q ss_pred --------HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 143 --------KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 143 --------~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
..+..++..+|++++|+|+++ +...+...+..+...+.| +++|+||+|+....+ .+.+.+.++.+.+
T Consensus 72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P-~ilvlNK~D~~~~~~---~~~~~l~~l~~~~ 146 (301)
T 1ega_A 72 RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAP-VILAVNKVDNVQEKA---DLLPHLQFLASQM 146 (301)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSC-EEEEEESTTTCCCHH---HHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCC-EEEEEECcccCccHH---HHHHHHHHHHHhc
Confidence 222455678999999999987 777777777777666888 778999999987221 2333445555545
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
++ .+++++||+++ .++.++++.+...+|.
T Consensus 147 ~~----~~~i~iSA~~g----------~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 147 NF----LDIVPISAETG----------LNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CC----SEEEECCTTTT----------TTHHHHHHHHHTTCCB
T ss_pred Cc----CceEEEECCCC----------CCHHHHHHHHHHhCCc
Confidence 43 47999999986 4689999999887763
No 63
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.85 E-value=6.3e-21 Score=155.33 Aligned_cols=160 Identities=19% Similarity=0.128 Sum_probs=100.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|++....... ....+.+.......++.....+.+|||||++++.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 69 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKH--------------ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH 69 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSC--------------CCCCSCEEEEEEEESSSCEEEEEEEECCCC----
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCC--------------CCccceEEEEEEEEECCEEEEEEEEECCCcHhhh
Confidence 45689999999999999999999853111000 0001222222333333344578999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
.....+++.+|++++|+|+++....+ ...++..+.. .++| +++|+||+|+.++... ..++..++.+.++
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 142 (170)
T 1z08_A 70 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKERHV---SIQEAESYAESVG--- 142 (170)
T ss_dssp ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGGCCS---CHHHHHHHHHHTT---
T ss_pred hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECccccccccc---CHHHHHHHHHHcC---
Confidence 88888889999999999998743322 2233333332 3566 8899999999763211 1124455556554
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++.+.+
T Consensus 143 --~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 143 --AKHYHTSAKQN----------KGIEELFLDLCKRM 167 (170)
T ss_dssp --CEEEEEBTTTT----------BSHHHHHHHHHHHH
T ss_pred --CeEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 68999999987 45888888877654
No 64
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.85 E-value=9e-21 Score=153.81 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=104.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEE-eEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIA-TAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~-~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
+.++|+++|.+|+|||||+++|++....... ....... .....++.....+.+|||||+.++.
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKY----------------DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT 65 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSC----------------CCCSEEEEEEEEESSSCEEEEEEEEECSSCSST
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCCccceEEEEEEECCEEEEEEEEECCChHHHH
Confidence 4579999999999999999999852110000 0001111 1122333345678999999999988
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
..+..++..+|++++|+|+++..... ...++..+.. .++| +++|+||+|+.+.... ..++..++.+.++
T Consensus 66 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 139 (167)
T 1c1y_A 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVV---GKEQGQNLARQWC-- 139 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT--
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECccccccccC---CHHHHHHHHHHcc--
Confidence 88888889999999999998742222 2233333333 2677 8899999999763211 1224445555542
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
..+++++||+++ .++.++++++.+.+
T Consensus 140 --~~~~~~~Sa~~~----------~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 140 --NCAFLESSAKSK----------INVNEIFYDLVRQI 165 (167)
T ss_dssp --SCEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred --CCcEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 378999999987 45888888887643
No 65
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.3e-20 Score=156.34 Aligned_cols=162 Identities=17% Similarity=0.114 Sum_probs=104.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
++.++|+++|.+|+|||||+++|++... ... .. ..+.+ ...+...+..+.+|||||++++.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~------~~~--~~-------t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~ 74 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEV------VHT--SP-------TIGSN----VEEIVINNTRFLMWDIGGQESLR 74 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSC------EEE--EC-------CSCSS----CEEEEETTEEEEEEECCC----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC------CcC--cC-------CCccc----eEEEEECCEEEEEEECCCCHhHH
Confidence 4568999999999999999999984211 100 00 01111 12233457889999999999988
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
..+..++..+|++++|+|+++... .....++..+.. .++| +++|+||+|+...... + ++.+.+....+.
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~i~~~~~~~~~~ 148 (187)
T 1zj6_A 75 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMTV-A----EISQFLKLTSIK 148 (187)
T ss_dssp GGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTCCCH-H----HHHHHHTGGGCC
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCe-EEEEEECCCCcCCCCH-H----HHHHHhChhhhc
Confidence 777888899999999999988643 233334444433 3566 8899999999763211 1 222333222122
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCCC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPE 259 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~~ 259 (330)
...++++++||+++ .++.++++++.+.++.+.
T Consensus 149 ~~~~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 149 DHQWHIQACCALTG----------EGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp SSCEEEEECBTTTT----------BTHHHHHHHHHHHHCC--
T ss_pred CCCcEEEEccCCCC----------cCHHHHHHHHHHHHHHHh
Confidence 23478999999997 468999998888775443
No 66
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=156.88 Aligned_cols=158 Identities=17% Similarity=0.109 Sum_probs=106.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC--eeEEEEeCCCchh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (330)
...++|+++|.+|+|||||+++|++..... +....++.......+...+ ..+.||||||+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 77 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE----------------SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS----------------CCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC----------------CCCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 456899999999999999999998421110 0111233333333333333 6789999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
+...+..+++.+|++++|+|+++.... ....++..+... ++| +++|+||+|+...... ..++..++.+.++
T Consensus 78 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~- 152 (196)
T 3tkl_A 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVV---DYTTAKEFADSLG- 152 (196)
T ss_dssp GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCS---CHHHHHHHHHHTT-
T ss_pred hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccccccccc---CHHHHHHHHHHcC-
Confidence 988888889999999999999874332 223344444443 566 8899999999764321 1123455556655
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++.+.+
T Consensus 153 ----~~~~~~Sa~~g----------~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 153 ----IPFLETSAKNA----------TNVEQSFMTMAAEI 177 (196)
T ss_dssp ----CCEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred ----CcEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999986 34666666655543
No 67
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.2e-20 Score=158.81 Aligned_cols=159 Identities=20% Similarity=0.152 Sum_probs=104.9
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEe--EEEEeeeCCeeEEEEeCCCch
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~--~~~~~~~~~~~i~iiDtPG~~ 139 (330)
....++|+++|.+|+|||||+++|++....... ...++.+. ....++.....+.||||||++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ----------------GATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC----------------CCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCC----------------CCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 345689999999999999999999853211110 01122222 223333233578999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
+|...+..+++.+|++++|+|+++....+ ...++..+... ++| +++|+||+|+....+. ..++..++.+..+
T Consensus 87 ~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v---~~~~~~~~~~~~~ 162 (201)
T 2ew1_A 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKIDLAERREV---SQQRAEEFSEAQD 162 (201)
T ss_dssp GGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCSS---CHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccc---CHHHHHHHHHHcC
Confidence 99988888999999999999998743322 23344444433 456 8899999999753221 1123344444444
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++.+.+
T Consensus 163 -----~~~~~~Sa~~g----------~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 163 -----MYYLETSAKES----------DNVEKLFLDLACRL 187 (201)
T ss_dssp -----CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred -----CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 67999999986 35777777665544
No 68
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.84 E-value=5.8e-21 Score=162.29 Aligned_cols=161 Identities=17% Similarity=0.129 Sum_probs=108.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
.+.+||+|+|.+|+|||||+++++...+..... ...|................+.||||+|+++|.
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~--------------~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~ 76 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--------------ATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR 76 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC------------------------CEEEEEECSSCEEEEEEECCSCTTTCG
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcC--------------CccceEEEEEEEEecceEEEEEEEECCCchhhh
Confidence 456899999999999999999998531111000 001222222233344444678999999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..+..+++.+|++++|+|.++.... ....++..+.. .++| +++|.||+|+..... ...++..++.+.++
T Consensus 77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~~r~---V~~~e~~~~a~~~~--- 149 (216)
T 4dkx_A 77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKTDLADKRQ---VSIEEGERKAKELN--- 149 (216)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECTTCGGGCC---SCHHHHHHHHHHHT---
T ss_pred hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCe-EEEEeeccchHhcCc---ccHHHHhhHHHHhC---
Confidence 8888999999999999999874332 23344444433 2466 889999999976321 11235566667766
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++++||+++ .++.++++.|.+.++
T Consensus 150 --~~~~e~SAktg----------~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 150 --VMFIETSAKAG----------YNVKQLFRRVAAALP 175 (216)
T ss_dssp --CEEEEEBTTTT----------BSHHHHHHHHHHHC-
T ss_pred --CeeEEEeCCCC----------cCHHHHHHHHHHHHH
Confidence 57999999997 458888988887765
No 69
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.84 E-value=1.4e-20 Score=152.54 Aligned_cols=158 Identities=17% Similarity=0.114 Sum_probs=101.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
+.++|+++|.+|+|||||+++|++...... . . ...+... .....++.....+.||||||+.++..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---------~--~---~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVED---------Y--E---PTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAA 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSC---------C--C---TTCCEEE-EEEEEETTEEEEEEEEECCC---CHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCC---------C--C---CCcceEE-EEEEEECCEEEEEEEEECCCcchhHH
Confidence 468999999999999999999985311000 0 0 0001111 11222333335789999999999998
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
.+..+++.+|++++|+|+++..... ...++..+.. .++| +++|+||+|+.+..+. ..++..++.+.++
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 140 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV---SVEEAKNRADQWN--- 140 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGGCCS---CHHHHHHHHHHHT---
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccccccCcc---CHHHHHHHHHHcC---
Confidence 8888899999999999998743222 2233333332 2677 8899999999763221 1224455555554
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++.+.+
T Consensus 141 --~~~~~~Sa~~~----------~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 141 --VNYVETSAKTR----------ANVDKVFFDLMREI 165 (168)
T ss_dssp --CEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred --CeEEEeCCCCC----------CCHHHHHHHHHHHH
Confidence 57999999997 46888888876643
No 70
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.84 E-value=4.2e-21 Score=159.61 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=108.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|++....... ....+.+.......+......+.||||||+++|.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 85 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAF--------------VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR 85 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--------------CCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCc--------------CCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh
Confidence 44689999999999999999999853111000 0111344443344444445689999999999988
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..+..++..+|++++|+|+++.... ....++..+... ++| +++|+||+|+...... ..++..++.+.++
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 158 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDERVV---PAEDGRRLADDLG--- 158 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS---CHHHHHHHHHHHT---
T ss_pred hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccCC---CHHHHHHHHHHcC---
Confidence 7788888999999999999874332 233444555543 566 8899999999763211 1124455556655
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++.+.+
T Consensus 159 --~~~~~~Sa~~g----------~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 159 --FEFFEASAKEN----------INVKQVFERLVDVI 183 (189)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred --CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 58999999986 35777777776543
No 71
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=154.41 Aligned_cols=158 Identities=18% Similarity=0.152 Sum_probs=98.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh--h
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--Y 141 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--~ 141 (330)
..++|+++|++|+|||||+++|++..... . ....|.+.......++.....+.+|||||+.. +
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~------~---------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 67 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERD------L---------HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDK 67 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC--------------------CCCSSSSEEEEEEEETTEEEEEEEECCC-------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcc------c---------cCccccceeEEEEEECCEEEEEEEEecCCCCccch
Confidence 46799999999999999999998422110 0 01124444444444443445789999999987 3
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc----CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV----GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~----~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
.......++.+|++++|+|+++..... ..+++..+... ++| +++|+||+|+.+..+.. .++...+...++
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~~~~~~~- 142 (175)
T 2nzj_A 68 SWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADLARCREVS---VEEGRACAVVFD- 142 (175)
T ss_dssp CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTCTTTCCSC---HHHHHHHHHHHT-
T ss_pred hhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhhccccccC---HHHHHHHHHHcC-
Confidence 444456677899999999998743322 23344444443 678 88999999997632211 123334444444
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++.+.+
T Consensus 143 ----~~~~~~Sa~~g----------~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 143 ----CKFIETSATLQ----------HNVAELFEGVVRQL 167 (175)
T ss_dssp ----SEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ----CeEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 68999999996 35777777776544
No 72
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.84 E-value=6.2e-21 Score=157.54 Aligned_cols=160 Identities=18% Similarity=0.185 Sum_probs=104.1
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (330)
...+.++|+++|.+|+|||||+++|++....... . ...+... .....++.....+.+|||||+++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~-----------~---~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 78 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY-----------D---PTIEDSY-LKHTEIDNQWAILDVLDTAGQEE 78 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC-----------C---TTCCEEE-EEEEEETTEEEEEEEEECCSCGG
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------C---CCcccee-EEEEEeCCcEEEEEEEECCCchh
Confidence 4466789999999999999999999842110000 0 0001111 22222222334567799999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHH----HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~----~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
|......+++.+|++++|+|+++..... ...++..+. ..++| +++|+||+|+...... ..++..++.+.++
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~v---~~~~~~~~~~~~~ 154 (183)
T 3kkq_A 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLRKV---TRDQGKEMATKYN 154 (183)
T ss_dssp GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTCCS---CHHHHHHHHHHHT
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhccCc---CHHHHHHHHHHhC
Confidence 9888888889999999999998743222 223333332 24677 8899999998753211 1224455666655
Q ss_pred CCCCCccEEEeecc-ccccCCccccchhhHHHHHHHHhhh
Q 020176 216 FPGDEIPIIRGSAT-SALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~-~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++++++||+ ++ .++.++++.+.+.
T Consensus 155 -----~~~~~~Sa~~~~----------~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 155 -----IPYIETSAKDPP----------LNVDKTFHDLVRV 179 (183)
T ss_dssp -----CCEEEEBCSSSC----------BSHHHHHHHHHHH
T ss_pred -----CeEEEeccCCCC----------CCHHHHHHHHHHH
Confidence 679999999 75 3578888777654
No 73
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.84 E-value=9.9e-21 Score=159.11 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=98.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
..++|+++|.+|+|||||+++|++....... ....+.+.......+......+.||||||+++|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 72 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAF--------------VSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRT 72 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCC--------------CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCc--------------CCccceeEEEEEEEECCeEEEEEEEECCCchhhcc
Confidence 4579999999999999999999842110000 00113333333334444456889999999999999
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
.+..+++.+|++++|+|+++..... ...++..+... ++| +++|+||+|+...... ..++..++.+.++
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~---- 144 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDERVV---SSERGRQLADHLG---- 144 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSCCS---CHHHHHHHHHHHT----
T ss_pred hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCccccc---CHHHHHHHHHHCC----
Confidence 9999999999999999998743322 23344444442 566 8899999999763211 1124445555555
Q ss_pred CccEEEeecccc
Q 020176 220 EIPIIRGSATSA 231 (330)
Q Consensus 220 ~~pv~~~Sa~~~ 231 (330)
++++++||+++
T Consensus 145 -~~~~~~Sa~~~ 155 (203)
T 1zbd_A 145 -FEFFEASAKDN 155 (203)
T ss_dssp -CEEEECBTTTT
T ss_pred -CeEEEEECCCC
Confidence 58999999985
No 74
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=1.1e-20 Score=178.35 Aligned_cols=149 Identities=21% Similarity=0.306 Sum_probs=109.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC-----
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG----- 137 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG----- 137 (330)
...++|+++|.+|+|||||+|+|++ ....... ...|+|.+.....+...+..++||||||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~------~~~~~~~---------~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~ 257 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLG------EERVIVS---------NVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKG 257 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHT------STTEEEC---------C------CTTSEEEEETTEEEEETTGGGTTTBT
T ss_pred cccceeEEecCCCCCHHHHHHHHhC------CCccccC---------CCCCeEEEEEEEEEEECCceEEEEECCCCCcCc
Confidence 4568999999999999999999983 2222211 1235666555555667788999999999
Q ss_pred -----chhhHHHH-HHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChH-HHHHHHHHHHHHH
Q 020176 138 -----HADYVKNM-ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE-ELLELVEMELREL 210 (330)
Q Consensus 138 -----~~~~~~~~-~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~-~~~~~~~~~~~~~ 210 (330)
++.|.... ..++..+|++++|+|++++...++..++..+...++| +++|+||+|+.+.. ...+++.+.+++.
T Consensus 258 ~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 258 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDH 336 (456)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCSSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEEChhcCCCchHHHHHHHHHHHHh
Confidence 56675543 4578899999999999999999999999999888988 88999999998632 2234444455555
Q ss_pred HHhcCCCCCCccEEEeecccc
Q 020176 211 LSFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 211 ~~~~~~~~~~~pv~~~Sa~~~ 231 (330)
+...+ .+|++++||+++
T Consensus 337 ~~~~~----~~~~~~~SA~~g 353 (456)
T 4dcu_A 337 FQFLD----YAPILFMSALTK 353 (456)
T ss_dssp CGGGT----TSCEEECCTTTC
T ss_pred cccCC----CCCEEEEcCCCC
Confidence 54443 379999999985
No 75
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=2.3e-20 Score=152.04 Aligned_cols=159 Identities=16% Similarity=0.105 Sum_probs=105.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
.++|+++|.+|+|||||+++|++....... .. ..+.+.. .....+.....+.+|||||+.++...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------~~-------t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~ 67 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESY-------IP-------TVEDTYR-QVISCDKSICTLQITDTTGSHQFPAM 67 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSC-------CC-------CSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC-------CC-------CccccEE-EEEEECCEEEEEEEEECCCchhhHHH
Confidence 579999999999999999999842110000 00 0011111 11222233357899999999999888
Q ss_pred HHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHH-----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~-----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
+..++..+|++++|+|+++... .....++..+.. .++| +++|+||+|+.+..+.. ..+...+.+.++
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~~~v~---~~~~~~~~~~~~--- 140 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDESPSREVQ---SSEAEALARTWK--- 140 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGGCCSC---HHHHHHHHHHHT---
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccccccC---HHHHHHHHHHhC---
Confidence 8888999999999999986432 223334444433 2577 88999999997642211 113334444444
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
++++++||+++ .++.++++++.+.+..
T Consensus 141 --~~~~~~Sa~~~----------~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 141 --CAFMETSAKLN----------HNVKELFQELLNLEKR 167 (172)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHTCCS
T ss_pred --CeEEEecCCCC----------cCHHHHHHHHHHHHhh
Confidence 68999999997 4699999999887653
No 76
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.84 E-value=4.7e-20 Score=149.28 Aligned_cols=156 Identities=19% Similarity=0.136 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (330)
++|+++|++|+|||||+++|++..... . ..|+......+...+..+.+|||||++++...+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~------------~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 61 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT------------T-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC------------C-------CCCSSCCEEEEECSSCEEEEEECCCCGGGHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc------------c-------cCcCceeEEEEEECCEEEEEEEcCCChhhHHHH
Confidence 479999999999999999998532110 0 001111122344567889999999999999888
Q ss_pred HHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 146 ITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 146 ~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
..++..+|++++|+|+++..... ...++..+.. .+.| +++|+||+|+.+.... + ++.+.+.........
T Consensus 62 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~~ 135 (164)
T 1r8s_A 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSLRHRN 135 (164)
T ss_dssp HHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCH-H----HHHHHTTGGGCSSCC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCCCCH-H----HHHHHhCcccccCcc
Confidence 88899999999999998753222 2233333322 2566 8899999999764211 1 122222111122234
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++++||+++ .++.++++++.+.+.
T Consensus 136 ~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 136 WYIQATCATSG----------DGLYEGLDWLSNQLR 161 (164)
T ss_dssp EEEEECBTTTT----------BTHHHHHHHHHHHC-
T ss_pred EEEEEcccCCC----------cCHHHHHHHHHHHHh
Confidence 78999999997 468999999887664
No 77
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.84 E-value=5.1e-21 Score=159.46 Aligned_cols=160 Identities=15% Similarity=0.093 Sum_probs=105.7
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
....++|+++|.+|+|||||+++|++...... .....+.+.......++.....+.||||||+++|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 83 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------HDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 83 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCSSEEEEEEEETTEEEEEEEECCTTGGGT
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCC--------------CCCcccceeEEEEEEECCEEEEEEEEECCCchhh
Confidence 35568999999999999999999985311000 0011133333333334333467899999999998
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
...+..+++.+|++++|+|+++....+ ...++..+... ++| +++|+||+|+....+. ..++..++.+..+
T Consensus 84 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~~~~~~~~~-- 157 (191)
T 2a5j_A 84 RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLESRRDV---KREEGEAFAREHG-- 157 (191)
T ss_dssp SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS---CHHHHHHHHHHHT--
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCCcccc---CHHHHHHHHHHcC--
Confidence 877778888999999999998743322 23344444443 566 8899999999753211 1123445555554
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++++++||+++ .++.++++++.+.
T Consensus 158 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 158 ---LIFMETSAKTA----------CNVEEAFINTAKE 181 (191)
T ss_dssp ---CEEEEECTTTC----------TTHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 58999999986 4577777766554
No 78
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=157.58 Aligned_cols=161 Identities=17% Similarity=0.168 Sum_probs=105.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|++....... ....+.........++.....+.||||||+++|.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 92 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQ--------------GSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR 92 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC------------------------CEEEEEEEETTEEEEEEEECCTTCGGGH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCC--------------CCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH
Confidence 45689999999999999999999853111000 0001112222222232223589999999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..+..+++.+|++++|+|+++.... ....++..+.. .++| +++|+||+|+...... ..+++.++.+.+++
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v---~~~~~~~~~~~~~~-- 166 (201)
T 2hup_A 93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV-QLLIGNKSDLSELREV---SLAEAQSLAEHYDI-- 166 (201)
T ss_dssp HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS---CHHHHHHHHHHTTC--
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCcccccccc---CHHHHHHHHHHcCC--
Confidence 9889999999999999999874322 22344444444 3466 8899999999753211 12245556666653
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
.+++++||+++ .++.++++++.+.+
T Consensus 167 --~~~~~~SA~~g----------~gi~~l~~~l~~~i 191 (201)
T 2hup_A 167 --LCAIETSAKDS----------SNVEEAFLRVATEL 191 (201)
T ss_dssp --SEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred --CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 38999999986 35777777776654
No 79
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.84 E-value=1.7e-20 Score=152.85 Aligned_cols=158 Identities=18% Similarity=0.113 Sum_probs=105.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
+.++|+++|.+|+|||||+++|.+... .. . ..|+......+......+.+|||||++++..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~-----~~-------~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 66 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEV-----VT-------T-------IPTIGFNVETVTYKNLKFQVWDLGGLTSIRP 66 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSC-----CC-------C-------CCCSSEEEEEEEETTEEEEEEEECCCGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC-----CC-------c-------CCcCccceEEEEECCEEEEEEECCCChhhhH
Confidence 457999999999999999999974211 00 0 0111122223444578999999999999888
Q ss_pred HHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
.+..+++.+|++++|+|+++.... .....+..+.. .++| +++|+||+|+.+..+. + ++.+.+.......
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~ 140 (171)
T 1upt_A 67 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDMEQAMTS-S----EMANSLGLPALKD 140 (171)
T ss_dssp GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCH-H----HHHHHHTGGGCTT
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCCCCH-H----HHHHHhCchhccC
Confidence 888888999999999999875432 22333333322 3566 8899999999864221 1 1222222111222
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
..++++++||+++ .++.++++++.+.++
T Consensus 141 ~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 141 RKWQIFKTSATKG----------TGLDEAMEWLVETLK 168 (171)
T ss_dssp SCEEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred CceEEEECcCCCC----------cCHHHHHHHHHHHHh
Confidence 3478999999997 468888888876543
No 80
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.84 E-value=5.9e-21 Score=155.08 Aligned_cols=158 Identities=15% Similarity=0.173 Sum_probs=103.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
..++|+++|++|+|||||+++|++....... ....+.........+......+.+|||||+.++..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 69 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDY--------------KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA 69 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCS--------------SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCC--------------CCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH
Confidence 4679999999999999999999853111000 00012222223333333345789999999999877
Q ss_pred HHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHH--cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ--VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~--~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
.+..++..+|++++|+|+++.... ....++..+.. .+.| +++|+||+|+.+..+. ..+++.++.+.++
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~----- 140 (168)
T 1z2a_A 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDSCI---KNEEAEGLAKRLK----- 140 (168)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGCSS---CHHHHHHHHHHHT-----
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCccccc---CHHHHHHHHHHcC-----
Confidence 777888899999999999874322 22233333333 3677 8899999999763221 1224445555554
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++++++||+++ .++.++++++.+.
T Consensus 141 ~~~~~~Sa~~~----------~~i~~l~~~l~~~ 164 (168)
T 1z2a_A 141 LRFYRTSVKED----------LNVSEVFKYLAEK 164 (168)
T ss_dssp CEEEECBTTTT----------BSSHHHHHHHHHH
T ss_pred CeEEEEecCCC----------CCHHHHHHHHHHH
Confidence 58999999986 3467777776653
No 81
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.84 E-value=1.5e-20 Score=152.99 Aligned_cols=154 Identities=22% Similarity=0.239 Sum_probs=100.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH-
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV- 142 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~- 142 (330)
...+|+++|++|+|||||+++|++.....+ ..++++.......+...+..+.+|||||+.+|.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 65 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIG----------------NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTA 65 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC---------------------CCCCCEEEEEETTEEEEEEECCCCSCSSS
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeecc----------------CCCCcceeeeEEEEEECCcEEEEEECCCcccCCC
Confidence 357899999999999999999984211000 112344433333444556789999999987753
Q ss_pred -----HHHHHhhh--ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 143 -----KNMITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 143 -----~~~~~~~~--~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
.....+++ .+|++++|+|++.. .....++..+...++| +++|+||+|+...... ..+..++.+.++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~ 138 (165)
T 2wji_A 66 NSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGAN-LLLALNKMDLAKSLGI----EIDVDKLEKILG 138 (165)
T ss_dssp SSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCC-EEEEEECHHHHHHTTC----CCCHHHHHHHHT
T ss_pred cchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCC-EEEEEEchHhccccCh----hhHHHHHHHHhC
Confidence 22233333 79999999999762 2233445555667888 8899999998642211 012233444444
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++.+.+
T Consensus 139 -----~~~~~~SA~~~----------~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 139 -----VKVVPLSAAKK----------MGIEELKKAISIAV 163 (165)
T ss_dssp -----SCEEECBGGGT----------BSHHHHHHHHHHHT
T ss_pred -----CCEEEEEcCCC----------CCHHHHHHHHHHHh
Confidence 57999999997 46888998887654
No 82
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.84 E-value=2.8e-20 Score=153.89 Aligned_cols=158 Identities=15% Similarity=0.135 Sum_probs=104.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC--eeEEEEeCCCchh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (330)
...++|+++|++|+|||||+++|++...... ....++.......+...+ ..+.||||||+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 71 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDD----------------SNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT----------------CCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCccceEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 4568999999999999999999985311110 011223232222333333 5789999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
|...+..++..+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+....+. ..++..++.+..+
T Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~- 146 (186)
T 2bme_A 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-IILCGNKKDLDADREV---TFLEASRFAQENE- 146 (186)
T ss_dssp GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcC-
Confidence 99999999999999999999987433222 233333333 3566 8899999999753211 1123445555544
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++...+
T Consensus 147 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 147 ----LMFLETSALTG----------ENVEEAFVQCARKI 171 (186)
T ss_dssp ----CEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ----CEEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 68999999986 34666666665543
No 83
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.84 E-value=1.6e-20 Score=156.15 Aligned_cols=165 Identities=14% Similarity=0.135 Sum_probs=104.5
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
.++.++|+++|.+|+|||||+++|++....... ....+.+.......++.....+.||||||+++|
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 82 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT--------------EATIGVDFRERAVDIDGERIKIQLWDTAGQERF 82 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC--------------CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------CCCcceEEEEEEEEECCEEEEEEEEECCCchhh
Confidence 356689999999999999999999853111000 001122333333333333467999999999998
Q ss_pred H-HHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 142 V-KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 142 ~-~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
. ..+..+++.+|++++|+|+++..... ...++..+.. .++| +++|+||+|+.+..+. ..++..++.+..+
T Consensus 83 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~~~~~~~~~ 158 (189)
T 1z06_A 83 RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAIQV---PTDLAQKFADTHS 158 (189)
T ss_dssp HTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT
T ss_pred hhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccee---CHHHHHHHHHHcC
Confidence 8 66777888999999999998743222 2333333332 3567 8899999999753211 1123445555554
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++++||+++.. ..++.++++++.+.++
T Consensus 159 -----~~~~~~Sa~~~~~-------~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 159 -----MPLFETSAKNPND-------NDHVEAIFMTLAHKLK 187 (189)
T ss_dssp -----CCEEECCSSSGGG-------GSCHHHHHHHHC----
T ss_pred -----CEEEEEeCCcCCc-------ccCHHHHHHHHHHHHh
Confidence 5799999998621 1358888888876553
No 84
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.84 E-value=8.1e-21 Score=165.62 Aligned_cols=151 Identities=22% Similarity=0.243 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH--
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK-- 143 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~-- 143 (330)
++|+++|.+|+|||||+|+|++. ..... ..+|+|.......+...+..+.||||||+.++..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~------~~~v~----------~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~ 65 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA------NQRVG----------NWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA 65 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT------SEEEE----------ECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCC------CCCcc----------CCCCceEEEEEEEEEECCeEEEEEeCCCcccccccc
Confidence 48999999999999999999843 21111 1237777777777777788999999999876542
Q ss_pred --------HHHHhh--hccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHh
Q 020176 144 --------NMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (330)
Q Consensus 144 --------~~~~~~--~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~ 213 (330)
....++ ..+|++++|+|+++ ..........+...++| +++|+||+|+...... ......+.+.
T Consensus 66 ~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~p-vilv~NK~Dl~~~~~~----~~~~~~l~~~ 138 (256)
T 3iby_A 66 EGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKP-VVVALNMMDIAEHRGI----SIDTEKLESL 138 (256)
T ss_dssp ---CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSC-EEEEEECHHHHHHTTC----EECHHHHHHH
T ss_pred cCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCC-EEEEEEChhcCCcCCc----HHHHHHHHHH
Confidence 223344 68999999999987 23344455556667889 8899999998753211 1122334444
Q ss_pred cCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 214 ~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++ +|++++||+++ .|+.++++++.+.
T Consensus 139 lg-----~~vi~~SA~~g----------~gi~el~~~i~~~ 164 (256)
T 3iby_A 139 LG-----CSVIPIQAHKN----------IGIPALQQSLLHC 164 (256)
T ss_dssp HC-----SCEEECBGGGT----------BSHHHHHHHHHTC
T ss_pred cC-----CCEEEEECCCC----------CCHHHHHHHHHhh
Confidence 44 68999999997 5699999999876
No 85
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.84 E-value=9.2e-21 Score=159.23 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=101.8
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
....++|+++|.+|+|||||+++|++........ ...+.+.......+......+.||||||+.+|
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--------------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 87 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSN--------------HTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF 87 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC--------------------------CCEEEEEEEETTEEEEEEEECCTTHHHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCC--------------CcccceeEEEEEEECCeeeEEEEEcCCCcHhH
Confidence 3567899999999999999999998432211100 00122222223333323368999999999988
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
...+..+++.+|++|+|+|+++....+. ..++..+.. .++| +++|+||+|+...... ...+..++.+..+
T Consensus 88 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~~~~~~~~~-- 161 (200)
T 2o52_A 88 RSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV-VILCGNKKDLDPEREV---TFLEASRFAQENE-- 161 (200)
T ss_dssp SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHHTT--
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCccccccc---CHHHHHHHHHHcC--
Confidence 7777788889999999999987433222 333444433 2566 8899999999753211 1123444555544
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++++++||+++ .++.++++++.+.
T Consensus 162 ---~~~~~~SA~~g----------~gi~~l~~~l~~~ 185 (200)
T 2o52_A 162 ---LMFLETSALTG----------ENVEEAFLKCART 185 (200)
T ss_dssp ---CEEEEECTTTC----------TTHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 68999999986 3466666666543
No 86
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.84 E-value=5.8e-20 Score=155.99 Aligned_cols=161 Identities=16% Similarity=0.105 Sum_probs=93.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEE--eEEEEeeeCCeeEEEEeCCCchh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIA--TAHVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~--~~~~~~~~~~~~i~iiDtPG~~~ 140 (330)
.+.++|+++|.+|+|||||+++|++....... ..++.. .....++.....+.||||||+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 94 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESY-----------------TPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC------------------------CCCCCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCC-----------------CCccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 45789999999999999999999843211100 001111 11222222335789999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchhhH--HHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHH---------HHHH
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLELV---------EMEL 207 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~~~--~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~---------~~~~ 207 (330)
|...+..++..+|++++|+|+++....... .++..+... ++| +++|+||+|+.......+.+ .++.
T Consensus 95 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 173 (214)
T 2j1l_A 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRG 173 (214)
T ss_dssp ----------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHH
T ss_pred hhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhhccchhhhhhcccccCcccHHHH
Confidence 988888888999999999999874332222 233444332 677 88999999998754433222 1244
Q ss_pred HHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 208 RELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 208 ~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
.++.+.++. .+++++||+++ .++.++++++...+
T Consensus 174 ~~~~~~~~~----~~~~~~SA~~g----------~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 174 QEMARSVGA----VAYLECSARLH----------DNVHAVFQEAAEVA 207 (214)
T ss_dssp HHHHHHTTC----SEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred HHHHHhcCC----CEEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 566666653 58999999986 45788887776644
No 87
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.2e-20 Score=155.88 Aligned_cols=163 Identities=17% Similarity=0.102 Sum_probs=109.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|++....... . .+ .+... .....++.....+.||||||+++|.
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~--------~-~t-----~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~ 80 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEY--------V-PT-----VFDHY-AVSVTVGGKQYLLGLYDTAGQEDYD 80 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSC--------C-CS-----SCCCE-EEEEESSSCEEEEEEECCCCSSSST
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCC--------C-Cc-----cccee-EEEEEECCEEEEEEEEECCCCcchh
Confidence 45689999999999999999999853111000 0 00 01111 1122223333678999999999988
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhH--HHHHHHHHc--CCCeEEEEEeeccCcChHHHHHH---------HHHHHHH
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLEL---------VEMELRE 209 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~--~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~---------~~~~~~~ 209 (330)
..+..+++.+|++++|+|+++....... .++..+... ++| +++|+||+|+.......+. ..++..+
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (194)
T 2atx_A 81 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK 159 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhcccccchhhcccccCcccCHHHHHH
Confidence 8788888999999999999874332222 344555554 678 8899999999874322111 1234555
Q ss_pred HHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 210 LLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 210 ~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+.+.++. .+++++||+++ .++.++++++.+.+
T Consensus 160 ~~~~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~i 191 (194)
T 2atx_A 160 LAKEIGA----CCYVECSALTQ----------KGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHTC----SCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHcCC----cEEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 6666654 48999999997 46888888887654
No 88
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=154.92 Aligned_cols=158 Identities=15% Similarity=0.080 Sum_probs=104.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC--eeEEEEeCCCchh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (330)
...++|+++|.+|+|||||+++|++.... .....+.+.......+...+ ..+.||||||+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 70 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS----------------GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC----------------CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchh
Confidence 45689999999999999999999832111 01112333333333333444 6789999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
+...+..++..+|++++|+|+++...... ..++..+... ++| +++|+||+|+.+.... ..++...+....+
T Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 144 (181)
T 3tw8_B 71 FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVC-RILVGNKNDDPERKVV---ETEDAYKFAGQMG-- 144 (181)
T ss_dssp CSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSE-EEEEEECTTCGGGCCS---CHHHHHHHHHHHT--
T ss_pred hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCCCchhccc---CHHHHHHHHHHcC--
Confidence 88888888899999999999987433222 2233333333 356 8899999998763211 1123444555554
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++.+.+
T Consensus 145 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 145 ---IQLFETSAKEN----------VNVEEMFNCITELV 169 (181)
T ss_dssp ---CCEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ---CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 57999999986 35777777766543
No 89
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.83 E-value=2.5e-20 Score=156.21 Aligned_cols=107 Identities=14% Similarity=0.126 Sum_probs=75.9
Q ss_pred eeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH-cCCCeEEEEEeeccCcChHHHHHHHHH
Q 020176 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ-VGVPSLVCFLNKVDLVEDEELLELVEM 205 (330)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~-~~~p~iivviNK~D~~~~~~~~~~~~~ 205 (330)
..+.||||||+.+|...+..++..+|++++|+|++++...+. ..++..+.. .+.| +++|+||+|+.... ...+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~----~~~~ 167 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYI-IILVANKIDKNKFQ----VDIL 167 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCE-EEEEEECTTCC-CC----SCHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCc-EEEEEECCCccccc----CCHH
Confidence 679999999999998888888999999999999987543333 334444443 4555 89999999932211 1123
Q ss_pred HHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 206 ELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 206 ~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++.++++..+ ++++++||+++ .++.++++++.+.
T Consensus 168 ~~~~~~~~~~-----~~~~~~Sa~~~----------~~i~~l~~~l~~~ 201 (208)
T 3clv_A 168 EVQKYAQDNN-----LLFIQTSAKTG----------TNIKNIFYMLAEE 201 (208)
T ss_dssp HHHHHHHHTT-----CEEEEECTTTC----------TTHHHHHHHHHHH
T ss_pred HHHHHHHHcC-----CcEEEEecCCC----------CCHHHHHHHHHHH
Confidence 4555666654 68999999986 4577777776654
No 90
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.83 E-value=1.9e-20 Score=154.12 Aligned_cols=162 Identities=19% Similarity=0.161 Sum_probs=94.6
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee-eCCeeEEEEeCCCchh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-TAKRHYAHVDCPGHAD 140 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~i~iiDtPG~~~ 140 (330)
....++|+++|++|+|||||+++|++....... ....+.+.......++ .....+.+|||||+++
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 70 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQY--------------KATIGADFLTKEVTVDGDKVATMQVWDTAGQER 70 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----------------CCCSCEEEEECCSSSCCEEEEEECCC----
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCccc--------------CCccceEEEEEEEEEcCCcEEEEEEEECCCChH
Confidence 345689999999999999999999853111000 0011222222233333 2346789999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH-------cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ-------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~-------~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~ 212 (330)
|...+..+++.+|++++|+|+++...... ..++..+.. .++| +++|+||+|+...... ...++..++.+
T Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~--v~~~~~~~~~~ 147 (182)
T 1ky3_A 71 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDAEESKKI--VSEKSAQELAK 147 (182)
T ss_dssp ------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTSCGGGCC--SCHHHHHHHHH
T ss_pred hhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCcccccccc--CCHHHHHHHHH
Confidence 99888888999999999999987433222 233333322 4567 8899999999643211 01123344444
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.. ...+++++||+++ .++.++++++.+.
T Consensus 148 ~~----~~~~~~~~Sa~~~----------~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 148 SL----GDIPLFLTSAKNA----------INVDTAFEEIARS 175 (182)
T ss_dssp HT----TSCCEEEEBTTTT----------BSHHHHHHHHHHH
T ss_pred hc----CCCeEEEEecCCC----------CCHHHHHHHHHHH
Confidence 32 2378999999986 3577777777654
No 91
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.83 E-value=2.1e-20 Score=154.81 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=98.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEe--EEEEeeeCCeeEEEEeCCCchh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~--~~~~~~~~~~~i~iiDtPG~~~ 140 (330)
++.++|+++|.+|+|||||+++|++...... . .+++... ....++.....+.||||||+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---------~--------~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 64 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDE---------Y--------DPTIEDSYRKQVVIDGETCLLDILDTAGQEE 64 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCC---------C--------CTTCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCC---------C--------CCCchheEEEEEEECCcEEEEEEEECCCcHH
Confidence 3568999999999999999999984311000 0 0111111 2222333334578899999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
+...+..++..+|++++|+|+++..... ...++..+.. .++| +++|+||+|+...... .++..++.+.++
T Consensus 65 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~----~~~~~~~~~~~~ 139 (189)
T 4dsu_A 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPSRTVD----TKQAQDLARSYG 139 (189)
T ss_dssp -CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSSCSSC----HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCcccccC----HHHHHHHHHHcC
Confidence 9888888889999999999998743222 2233333333 2577 8899999999753211 123444555554
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+|++++||+++ .++.++++++.+.+
T Consensus 140 -----~~~~~~Sa~~g----------~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 140 -----IPFIETSAKTR----------QGVDDAFYTLVREI 164 (189)
T ss_dssp -----CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred -----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999986 34666666665543
No 92
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.83 E-value=1.1e-19 Score=150.05 Aligned_cols=159 Identities=19% Similarity=0.155 Sum_probs=106.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|.+. ..... ....|.+. ..+...+..+.+|||||+++|.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~------~~~~~---------~~t~g~~~----~~~~~~~~~l~i~Dt~G~~~~~ 74 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE------DISHI---------TPTQGFNI----KSVQSQGFKLNVWDIGGQRKIR 74 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS------CCEEE---------EEETTEEE----EEEEETTEEEEEEECSSCGGGH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC------CCCcc---------cCcCCeEE----EEEEECCEEEEEEECCCCHHHH
Confidence 45689999999999999999999732 11100 00112221 2234457889999999999999
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHH----HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~----~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
..+..++..+|++++|+|+++..... ..+++..+. ..++| +++|+||+|+...... + ++.+.+......
T Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~~~~~~~~~~~~ 148 (181)
T 1fzq_A 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLLTAAPA-S----EIAEGLNLHTIR 148 (181)
T ss_dssp HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTCCCH-H----HHHHHTTGGGCC
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCcccCCCH-H----HHHHHhCchhcc
Confidence 88888899999999999998743322 223333322 13577 8899999999864211 1 222222211122
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
...++++++||+++ .++.++++++.+.+.
T Consensus 149 ~~~~~~~~~Sa~~g----------~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 149 DRVWQIQSCSALTG----------EGVQDGMNWVCKNVN 177 (181)
T ss_dssp SSCEEEEECCTTTC----------TTHHHHHHHHHHTC-
T ss_pred CCceEEEEccCCCC----------CCHHHHHHHHHHHHH
Confidence 23578999999997 569999999988664
No 93
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.83 E-value=5.6e-21 Score=157.82 Aligned_cols=160 Identities=15% Similarity=0.110 Sum_probs=80.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|++...... .....+.........++.....+.||||||+++|.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 71 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNST--------------FISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 71 (183)
T ss_dssp SEEEEEEEECCCCC----------------C--------------HHHHHCEEEEEEEEEETTEEEEEEEEEC-------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCC--------------CCCcccceeEEEEEEECCEEEEEEEEcCCCChhhh
Confidence 3568999999999999999999984321110 01111222222233333233679999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..+..+++.+|++++|+|+++... .....++..+... ++| +++|+||+|+...... ..++..++.+.++
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~~~~~~~~~--- 144 (183)
T 2fu5_C 72 TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE-KMILGNKCDVNDKRQV---SKERGEKLALDYG--- 144 (183)
T ss_dssp --CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEEC--CCSCCCS---CHHHHHHHHHHHT---
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccCCccCcC---CHHHHHHHHHHcC---
Confidence 887888899999999999987433 2223344444443 566 8899999999753211 1123445555554
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++.+.+
T Consensus 145 --~~~~~~Sa~~~----------~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 145 --IKFMETSAKAN----------INVENAFFTLARDI 169 (183)
T ss_dssp --CEEEECCC-------------CCHHHHHHHHHHHH
T ss_pred --CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 58999999986 34666666665443
No 94
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=156.14 Aligned_cols=161 Identities=19% Similarity=0.193 Sum_probs=106.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
.+.++|+++|.+|+|||||+++|++... +... ...|+......+...+..+.||||||++++.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~------~~~~-----------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNA------QSQN-----------ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYR 81 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGG------CCSS-----------CCCCSSEEEEEEECSSCEEEEEEECCSTTTG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC------CCCC-----------cCCccceeEEEEEECCEEEEEEECCCCHHHH
Confidence 4568999999999999999999984321 0000 0112222223344456899999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHH------cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~------~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
..+..++..+|++++|+|+++... .....++..+.. .++| +++|+||+|+...... + ++.+.++...
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~----~~~~~~~~~~ 155 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDLRDAVTS-V----KVSQLLCLEN 155 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTSTTCCCH-H----HHHHHHTGGG
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcCcccCCCH-H----HHHHHhChhh
Confidence 888888999999999999987422 222234443333 3677 8899999999763211 1 3333332222
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+....++++++||+++ .++.++++++.+.+.
T Consensus 156 ~~~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 156 IKDKPWHICASDAIKG----------EGLQEGVDWLQDQIQ 186 (190)
T ss_dssp CCSSCEEEEECBTTTT----------BTHHHHHHHHHHHC-
T ss_pred ccCCceEEEEccCCCC----------cCHHHHHHHHHHHHH
Confidence 2223578999999997 468888888887653
No 95
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.83 E-value=3.2e-20 Score=153.23 Aligned_cols=158 Identities=17% Similarity=0.127 Sum_probs=104.4
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
..+.++|+++|.+|+|||||+++|++... .... ...|.+. ..+...+..+.||||||+++|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~------~~~~---------~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~ 78 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV------VHTS---------PTIGSNV----EEIVINNTRFLMWDIGGQESL 78 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC------EEEE---------CCSSSSC----EEEEETTEEEEEEEESSSGGG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC------CccC---------CcCceee----EEEEECCEEEEEEECCCCHhH
Confidence 34568999999999999999999984311 1000 0012221 123345688999999999999
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
...+..++..+|++++|+|+++.... ...+++..+.. .++| +++|+||+|+...... + ++.+.+.....
T Consensus 79 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~i~~~~~~~~~ 152 (181)
T 2h17_A 79 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMTV-A----EISQFLKLTSI 152 (181)
T ss_dssp TCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCH-H----HHHHHTTGGGC
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCcccCCCH-H----HHHHHhCcccc
Confidence 88888888999999999999886433 23334444332 4566 8899999999763211 1 22222222112
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
....++++++||+++ .++.++++++.+.
T Consensus 153 ~~~~~~~~~~Sa~~g----------~gi~~l~~~l~~~ 180 (181)
T 2h17_A 153 KDHQWHIQACCALTG----------EGLCQGLEWMMSR 180 (181)
T ss_dssp CSSCEEEEECBTTTT----------BTHHHHHHHHHTC
T ss_pred cCCceEEEEccCCCC----------cCHHHHHHHHHhh
Confidence 224468999999997 4689999888753
No 96
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.83 E-value=8.7e-21 Score=154.37 Aligned_cols=157 Identities=18% Similarity=0.129 Sum_probs=102.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
.++|+++|++|+|||||+++|++..... ......+.+.......+......+.||||||++++...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 68 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP--------------SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI 68 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC---------------------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh
Confidence 5799999999999999999998431100 00011122222233333333457899999999998877
Q ss_pred HHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
+..++..+|++++|+|+++..... ...++..+... ++| +++|+||+|+..... ..++..++.+.++
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~----~~~~~~~~~~~~~----- 138 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVV----TADQGEALAKELG----- 138 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCCS----CHHHHHHHHHHHT-----
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCcc----CHHHHHHHHHHcC-----
Confidence 788888999999999998743322 23444444443 566 889999999954211 1123444555554
Q ss_pred ccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 221 ~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++.+.+
T Consensus 139 ~~~~~~Sa~~~----------~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 139 IPFIESSAKND----------DNVNEIFFTLAKLI 163 (170)
T ss_dssp CCEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 57999999986 35777777776644
No 97
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.5e-20 Score=156.59 Aligned_cols=160 Identities=16% Similarity=0.094 Sum_probs=107.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
.+.++|+++|.+|+|||||+++|++....... ....+.+.......++.....+.||||||+++|.
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 78 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPEL--------------AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR 78 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--------------CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccC--------------CCccceEEEEEEEEECCeEEEEEEEeCCCchhhh
Confidence 45689999999999999999999853211000 0111333333444444445679999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
..+..+++.+|++++|+|+++...... ..++..+.. .++| +++|+||+|+..... ..++..++.+..+
T Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~-- 151 (195)
T 1x3s_A 79 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV-NMLVGNKIDKENREV----DRNEGLKFARKHS-- 151 (195)
T ss_dssp CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCE-EEEEEECTTSSSCCS----CHHHHHHHHHHTT--
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCc-EEEEEECCcCccccc----CHHHHHHHHHHcC--
Confidence 888888899999999999987433222 233344433 2456 889999999964211 1123445555544
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++++||+++ .++.++++++.+.+.
T Consensus 152 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 152 ---MLFIEASAKTC----------DGVQCAFEELVEKII 177 (195)
T ss_dssp ---CEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred ---CEEEEecCCCC----------CCHHHHHHHHHHHHH
Confidence 67999999986 457888887776554
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.83 E-value=9.3e-20 Score=152.50 Aligned_cols=166 Identities=14% Similarity=0.124 Sum_probs=102.8
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee-eCCeeEEEEeCCCch
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-TAKRHYAHVDCPGHA 139 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~i~iiDtPG~~ 139 (330)
..+..++|+++|.+|+|||||++.|.+..... .......+.......+. .....+.||||||++
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 80 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---------------ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQM 80 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGG---------------GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc---------------ceeeeccccceeeeeccCCCeeEEEEEECCCCH
Confidence 34566899999999999999999887321100 00001111111122222 345789999999999
Q ss_pred hhHHHH---HHhhhccCeEEEEEeCCCCCchhhHHHHHHHHH-----cCCCeEEEEEeeccCcChHHHH---HHHHHH-H
Q 020176 140 DYVKNM---ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ-----VGVPSLVCFLNKVDLVEDEELL---ELVEME-L 207 (330)
Q Consensus 140 ~~~~~~---~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~-----~~~p~iivviNK~D~~~~~~~~---~~~~~~-~ 207 (330)
+|.... ..+++.+|++|+|+|+++........+...+.. .++| +++|+||+|+.+++... ..+..+ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~v~~~~~ 159 (196)
T 3llu_A 81 DFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN-FEVFIHKVDGLSDDHKIETQRDIHQRAN 159 (196)
T ss_dssp CTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCc-EEEEEeccccCchhhhhHHHhHHHHHHH
Confidence 987666 678889999999999998633333333333332 2566 88999999998743221 122222 3
Q ss_pred HHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 208 RELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 208 ~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.++.+ .......++++++||++ . ++.++++.+.+.
T Consensus 160 ~~~~~-~~~~~~~~~~~e~Sa~~-~----------~v~~~f~~l~~~ 194 (196)
T 3llu_A 160 DDLAD-AGLEKLHLSFYLTSIYD-H----------SIFEAFSKVVQK 194 (196)
T ss_dssp HHHHH-TTCTTSCEEEEEECTTS-T----------HHHHHHHHHHHH
T ss_pred HHHHH-hhhhcCCcceEEEEech-h----------hHHHHHHHHHHH
Confidence 33333 22222347899999997 3 588888887664
No 99
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.83 E-value=4.5e-20 Score=152.51 Aligned_cols=158 Identities=17% Similarity=0.111 Sum_probs=103.7
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEe--EEEEeeeCCeeEEEEeCCCch
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~--~~~~~~~~~~~i~iiDtPG~~ 139 (330)
.++.++|+++|.+|+|||||+++|++...... . ..++... ....++.....+.||||||+.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---------~--------~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVED---------Y--------EPTKADSYRKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCS---------C--------CTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCc---------C--------CCccceEEEEEEEECCEEEEEEEEECCCCc
Confidence 35578999999999999999999985311000 0 0111111 112222223578999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
++...+..++..+|++++|+|+++..... ...++..+.. .++| +++|+||+|+.+..+. ..+++.++++.+
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~ 153 (187)
T 2a9k_A 78 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV---SVEEAKNRAEQW 153 (187)
T ss_dssp CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGGGGCCS---CHHHHHHHHHHT
T ss_pred ccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCcc---CHHHHHHHHHHc
Confidence 99988888999999999999998743222 2223333322 2677 8899999999763211 122455556665
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+ ++++++||+++ .++.++++++.+.+
T Consensus 154 ~-----~~~~~~Sa~~~----------~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 154 N-----VNYVETSAKTR----------ANVDKVFFDLMREI 179 (187)
T ss_dssp T-----CEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred C-----CeEEEeCCCCC----------CCHHHHHHHHHHHH
Confidence 4 58999999996 45777777776543
No 100
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.83 E-value=1.4e-20 Score=159.85 Aligned_cols=159 Identities=20% Similarity=0.205 Sum_probs=100.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC----------CeeEEE
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA----------KRHYAH 132 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~----------~~~i~i 132 (330)
...++|+|+|.+|+|||||+++|++..... . . ....+.........+... ...+.|
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~----~-~---------~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 88 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNP----K-F---------ITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQL 88 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCC----E-E---------EEEEEEEEEEEEEEEEC-------CCEEEEEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCc----C-C---------CCceeEEEEEEEEEECCccccccccCceeEEEEE
Confidence 456899999999999999999998421100 0 0 000011111122223322 467999
Q ss_pred EeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhH-HHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHH
Q 020176 133 VDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMEL 207 (330)
Q Consensus 133 iDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~-~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~ 207 (330)
|||||+++|...+..+++.+|++|+|+|+++....+.. .++..+.. .++| +++|+||+|+....+. ..++.
T Consensus 89 ~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~v---~~~~~ 164 (217)
T 2f7s_A 89 WDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD-IVLIGNKADLPDQREV---NERQA 164 (217)
T ss_dssp EEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCE-EEEEEECTTCGGGCCS---CHHHH
T ss_pred EECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCC-EEEEEECCcccccccc---CHHHH
Confidence 99999999999889999999999999999874332222 22222221 3456 8899999999763221 12244
Q ss_pred HHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 208 RELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 208 ~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.++.+.++ ++++++||+++ .++.++++++.+.
T Consensus 165 ~~~~~~~~-----~~~~~~Sa~~g----------~gi~~l~~~l~~~ 196 (217)
T 2f7s_A 165 RELADKYG-----IPYFETSAATG----------QNVEKAVETLLDL 196 (217)
T ss_dssp HHHHHHTT-----CCEEEEBTTTT----------BTHHHHHHHHHHH
T ss_pred HHHHHHCC-----CcEEEEECCCC----------CCHHHHHHHHHHH
Confidence 55566654 57999999986 3455555555443
No 101
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.83 E-value=9e-21 Score=156.27 Aligned_cols=160 Identities=18% Similarity=0.141 Sum_probs=103.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|++... ... . ....+.+. .....++.....+.||||||+++|.
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~-----~~~----~-----~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~ 68 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQF-----VDS----Y-----DPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYS 68 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSC-----CSC----C-----CTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCC-----CCC----C-----CCCccccE-EEEEEECCEEEEEEEEeCCCchhhh
Confidence 4568999999999999999999984211 000 0 00112222 2222233333567999999999987
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHH----HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~----~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
.....+++.+|++++|+|+++...... ..++..+. ..++| +++|+||+|+...... ..++..++.+.++
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 142 (181)
T 3t5g_A 69 IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMERVI---SYEEGKALAESWN-- 142 (181)
T ss_dssp CCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTCCS---CHHHHHHHHHHTT--
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhccee---cHHHHHHHHHHhC--
Confidence 666777889999999999987322222 22222222 23677 8899999999653211 1234555666655
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++++||+++ .++.++++.+.+.+.
T Consensus 143 ---~~~~~~Sa~~~----------~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 143 ---AAFLESSAKEN----------QTAVDVFRRIILEAE 168 (181)
T ss_dssp ---CEEEECCTTSH----------HHHHHHHHHHHHHHH
T ss_pred ---CcEEEEecCCC----------CCHHHHHHHHHHHHH
Confidence 58999999997 568888888777553
No 102
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.83 E-value=8.7e-20 Score=156.45 Aligned_cols=163 Identities=12% Similarity=0.090 Sum_probs=102.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc----
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH---- 138 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~---- 138 (330)
...++|+++|.+|+|||||+++|++. ... .. ...+.|.......+...+..+.||||||+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~------~~~-~~---------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 90 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA------NVD-VQ---------SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT------CEE-EE---------CC-----CEEEEEEEETTEEEEEEECTTTTTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC------CCc-cC---------CCCCcceeeeeeeeecCCCeEEEEECCCCcCcc
Confidence 45689999999999999999999842 111 00 01233444444445556788999999998
Q ss_pred --hhh---HHHHHHhhhccCeEEEEEeCCCCCchh---hHHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHHHHHH
Q 020176 139 --ADY---VKNMITGAAQMDGGILVVSAPDGPMPQ---TKEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELR 208 (330)
Q Consensus 139 --~~~---~~~~~~~~~~~d~~l~vvda~~~~~~~---~~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~~~~~ 208 (330)
+.. ...+......+|++++|+|+++..... ...++..+... ++| +++|+||+|+....+......+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~ 169 (228)
T 2qu8_A 91 FENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS-IVIGFNKIDKCNMDSLSIDNKLLIK 169 (228)
T ss_dssp GGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCC-EEEEEECGGGCC--CCCHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCc-EEEEEeCcccCCchhhHHHHHHHHH
Confidence 331 122233466789999999998754422 23444555444 678 8899999999864332222333455
Q ss_pred HHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 209 ~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++.+..+ ..++++++||+++ .++.++++++...+
T Consensus 170 ~~~~~~~---~~~~~~~~SA~~g----------~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 170 QILDNVK---NPIKFSSFSTLTG----------VGVEQAKITACELL 203 (228)
T ss_dssp HHHHHCC---SCEEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHhcC---CCceEEEEecccC----------CCHHHHHHHHHHHH
Confidence 5555543 2268999999996 35777777666543
No 103
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.83 E-value=4.1e-20 Score=149.40 Aligned_cols=157 Identities=18% Similarity=0.152 Sum_probs=103.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
+.++|+++|.+|+|||||+++|++....... .. ..+.. ......+......+.+|||||+.++..
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---------~~-----~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~ 66 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEC---------DP-----TIEDS-YRKQVVIDGETCLLDILDTAGQEEYSA 66 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCC---------CT-----TCCEE-EEEEEEETTEEEEEEEEECCCCSSCCH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCcccc---------CC-----ccceE-EEEEEEECCEEEEEEEEECCCchhhhH
Confidence 3579999999999999999999853111000 00 00111 111222223345688999999999888
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc----CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV----GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~----~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
.+..++..+|++++|+|+++..... ..+++..+... ++| +++|+||+|+.+... ..++..++.+.++
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~--- 138 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAARTV----ESRQAQDLARSYG--- 138 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCS----CHHHHHHHHHHHT---
T ss_pred HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhccc----CHHHHHHHHHHcC---
Confidence 8888889999999999998643222 23333333332 677 889999999876321 1224455555555
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+|++++||+++ .++.++++++.+.+
T Consensus 139 --~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 139 --IPYIETSAKTR----------QGVEDAFYTLVREI 163 (166)
T ss_dssp --CCEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred --CeEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 57999999986 46888888876643
No 104
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.83 E-value=5.1e-20 Score=154.86 Aligned_cols=160 Identities=18% Similarity=0.122 Sum_probs=103.3
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
..+.++|+|+|.+|+|||||+++|++...... . . ...+... .....++.....+.||||||+.+|
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---------~--~---~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVED---------Y--E---PTKADSY-RKKVVLDGEEVQIDILDTAGQEDY 75 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTT---------C--C---TTCCEEE-EEEEEETTEEEEEEEEECCCTTCC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCC---------C--C---CccceEE-EEEEEECCEEEEEEEEcCCChhhh
Confidence 35678999999999999999999985311000 0 0 0001111 112222222357899999999999
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc----CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV----GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~----~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
...+..++..+|++++|+|+++..... ...++..+... ++| +++|+||+|+.+..+. ..+++.++.+.++
T Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~- 150 (206)
T 2bov_A 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV---SVEEAKNRAEQWN- 150 (206)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCGGGCCS---CHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCccccccc---cHHHHHHHHHHhC-
Confidence 988888899999999999998743222 22333333332 677 8899999999763221 1224455555554
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++...+
T Consensus 151 ----~~~~~~Sa~~g----------~gi~~l~~~l~~~i 175 (206)
T 2bov_A 151 ----VNYVETSAKTR----------ANVDKVFFDLMREI 175 (206)
T ss_dssp ----CEEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999986 34666666665443
No 105
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.83 E-value=4.2e-20 Score=153.02 Aligned_cols=159 Identities=19% Similarity=0.145 Sum_probs=105.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
++.++|+++|.+|+|||||+++|++.. ... . ..|+......+...+..+.+|||||++++.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~------~~~----~---------~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 76 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED------VDT----I---------SPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 76 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC------CSS----C---------CCCSSEEEEEEEETTEEEEEEEECCSHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC------CCc----c---------cccCccceEEEEECCEEEEEEECCCCHhHH
Confidence 456899999999999999999998421 000 0 011111222334467899999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
..+..+++.+|++++|+|+++.... ...+++..+.. .++| +++|+||+|+.+.... + ++.+.+......
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~----~~~~~~~~~~~~ 150 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDLPGALSC-N----AIQEALELDSIR 150 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCH-H----HHHHHTTGGGCC
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCCCCH-H----HHHHHhChhhcc
Confidence 8888888999999999999875432 22333433332 3566 8899999999764221 1 222222211122
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
...++++++||+++ .++.++++++.+.++
T Consensus 151 ~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 151 SHHWRIQGCSAVTG----------EDLLPGIDWLLDDIS 179 (186)
T ss_dssp SSCEEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred CCceEEEEeeCCCC----------CCHHHHHHHHHHHHH
Confidence 24578999999997 468888888876554
No 106
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.83 E-value=6.3e-20 Score=154.17 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=107.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|++......... ..+.... ....++.....+.||||||+++|.
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--------------t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~ 87 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP--------------TVFENYI-ADIEVDGKQVELALWDTAGQEDYD 87 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCC--------------SSCCCCE-EEEEETTEEEEEEEECCCCSGGGT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCC--------------cccceEE-EEEEECCEEEEEEEEECCCchhHH
Confidence 3467999999999999999999985321100000 0011111 112232233578999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhh--HHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHH---------HHHHHH
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVCFLNKVDLVEDEELLELV---------EMELRE 209 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~--~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~---------~~~~~~ 209 (330)
..+..++..+|++++|+|+++....+. ..++..+... ++| +++|+||+|+.......+.+ .++..+
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (201)
T 2gco_A 88 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166 (201)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhhcCccchhhhcccccCcCCHHHHHH
Confidence 877888899999999999987432222 2344445444 778 88999999998754332222 124455
Q ss_pred HHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 210 LLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 210 ~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+.+.++. .+++++||+++ .++.++++++.+.
T Consensus 167 ~~~~~~~----~~~~~~SA~~g----------~gi~~l~~~i~~~ 197 (201)
T 2gco_A 167 MANRISA----FGYLECSAKTK----------EGVREVFEMATRA 197 (201)
T ss_dssp HHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHH
T ss_pred HHHhCCC----cEEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 5666553 48999999997 4688888877653
No 107
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.83 E-value=1.8e-20 Score=157.91 Aligned_cols=160 Identities=17% Similarity=0.117 Sum_probs=101.0
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
....++|+++|++|+|||||+++|++........ ...+.+.......++.....+.||||||+.+|
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 70 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK--------------ATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 70 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCC--------------CCCSEEEEEEEEESSSCEEEEEEEEECSSGGG
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCC--------------CcccceEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 3456899999999999999999998532110000 00122222223333333467999999999998
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH-------cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHh
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ-------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~-------~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~ 213 (330)
...+..+++.+|++|+|+|+++...... ..++..+.. .++| +++|+||+|+..... ..++..++.+.
T Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~----~~~~~~~~~~~ 145 (207)
T 1vg8_A 71 QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDLENRQV----ATKRAQAWCYS 145 (207)
T ss_dssp SCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTSSCCCS----CHHHHHHHHHH
T ss_pred HHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCCccccc----CHHHHHHHHHh
Confidence 8777788889999999999987433222 223332222 3667 889999999974321 11233444442
Q ss_pred cCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 214 ~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
. ..++++++||+++ .++.++++++.+.
T Consensus 146 ~----~~~~~~~~Sa~~g----------~gi~~l~~~l~~~ 172 (207)
T 1vg8_A 146 K----NNIPYFETSAKEA----------INVEQAFQTIARN 172 (207)
T ss_dssp T----TSCCEEECBTTTT----------BSHHHHHHHHHHH
T ss_pred c----CCceEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 2 2378999999986 3466666665543
No 108
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.83 E-value=3.6e-20 Score=150.31 Aligned_cols=155 Identities=20% Similarity=0.118 Sum_probs=88.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
.++|+++|.+|+|||||+++|++.. .... ....+.+.. ....++.....+.+|||||++++...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~------~~~~---------~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVE------DGPE---------AEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWL 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE-EEEEETTEEEEEEEEECC--------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcc------ccCC---------CCccccceE-EEEEECCEEEEEEEEECCCCccchhh
Confidence 4689999999999999999997321 1100 011233332 22333444567899999999999888
Q ss_pred HHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (330)
...+++.+|++++|+|+++.... ....++..+.. .++| +++|+||+|+.+..+. ..++...+....+
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~---- 137 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDLVRSREV---SVDEGRACAVVFD---- 137 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSCCS---CHHHHHHHHHHTT----
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEecccccccccc---CHHHHHHHHHHhC----
Confidence 88888999999999999874322 22333344433 3677 8899999999763221 1123344455544
Q ss_pred CccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 220 ~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+|++++||+++ .++.++++++.+.
T Consensus 138 -~~~~~~Sa~~~----------~gi~~l~~~l~~~ 161 (166)
T 3q72_A 138 -CKFIETSAALH----------HNVQALFEGVVRQ 161 (166)
T ss_dssp -CEEEECBGGGT----------BSHHHHHHHHHHH
T ss_pred -CcEEEeccCCC----------CCHHHHHHHHHHH
Confidence 68999999997 4578888777654
No 109
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=6e-20 Score=155.03 Aligned_cols=164 Identities=16% Similarity=0.142 Sum_probs=106.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
+..++|+++|.+|+|||||+++|++....... ....+.... ....++.....+.||||||+++|.
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~ 87 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVY--------------VPTVFENYV-ADIEVDGKQVELALWDTAGQEDYD 87 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEEE-EEEEETTEEEEEEEEECTTCTTCT
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcC--------------CCcccceEE-EEEEECCEEEEEEEEECCCcHHHH
Confidence 34679999999999999999999853111000 000011111 112222233578999999999988
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhh--HHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHH---------HHHHH
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVE---------MELRE 209 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~--~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~---------~~~~~ 209 (330)
..+..++..+|++++|+|+++...... ..++..+... ++| +++|+||+|+.......+.+. ++..+
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (207)
T 2fv8_A 88 RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDLRSDEHVRTELARMKQEPVRTDDGRA 166 (207)
T ss_dssp TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhccccchhhhhhcccCCCCHHHHHH
Confidence 777788889999999999987432222 2344445444 778 889999999987543332221 13344
Q ss_pred HHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 210 LLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 210 ~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+.+.++. .+++++||+++ .++.++++++.+.+.
T Consensus 167 ~~~~~~~----~~~~~~SA~~g----------~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 167 MAVRIQA----YDYLECSAKTK----------EGVREVFETATRAAL 199 (207)
T ss_dssp HHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred HHHhcCC----CEEEEeeCCCC----------CCHHHHHHHHHHHHH
Confidence 4555443 48999999997 468888888877543
No 110
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.83 E-value=1.4e-20 Score=157.19 Aligned_cols=164 Identities=16% Similarity=0.107 Sum_probs=106.8
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (330)
.....++|+++|.+|+|||||+++|++......... ..+.+.. ....++.....+.||||||+++
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~--------------t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~ 83 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVP--------------TVFENFS-HVMKYKNEEFILHLWDTAGQEE 83 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCC--------------CSEEEEE-EEEEETTEEEEEEEEEECCSGG
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCC--------------eeeeeeE-EEEEECCEEEEEEEEECCCcHH
Confidence 345678999999999999999999985321100000 0011111 1122222335679999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchhh--HHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~~--~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
|...+..+++.+|++++|+|+++...... ..++..+... ++| +++|+||+|+...... +...++..++.+.++.
T Consensus 84 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~ 161 (194)
T 3reg_A 84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDLRKDGSD-DVTKQEGDDLCQKLGC 161 (194)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGGCCTTTT-CCCHHHHHHHHHHHTC
T ss_pred HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccCCCC-cccHHHHHHHHHhcCC
Confidence 98888888999999999999987433322 2333444433 466 8899999999753111 1122355666666664
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
.+++++||+++ .++.++++++.+.+
T Consensus 162 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~i 186 (194)
T 3reg_A 162 ----VAYIEASSVAK----------IGLNEVFEKSVDCI 186 (194)
T ss_dssp ----SCEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ----CEEEEeecCCC----------CCHHHHHHHHHHHH
Confidence 34999999997 45888888877654
No 111
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.83 E-value=1.3e-20 Score=155.03 Aligned_cols=159 Identities=13% Similarity=0.080 Sum_probs=100.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|++...... .. ...+.... ....++.....+.||||||+.+|.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----------~~---~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~ 71 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSD-----------YD---PTIEDSYT-KICSVDGIPARLDILDTAGQEEFG 71 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSS-----------CC---TTCCEEEE-EEEEETTEEEEEEEEECCCTTTTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccc-----------cC---CCcCceEE-EEEEECCEEEEEEEEECCCchhhH
Confidence 4568999999999999999999985311000 00 00011111 122222223578899999999987
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHH-H---HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLA-R---QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~-~---~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
..+..++..+|++++|+|+++.... ....++..+ . ..++| +++|+||+|+....+.. .++...+....+
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~-- 145 (181)
T 2fn4_A 72 AMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADLESQRQVP---RSEASAFGASHH-- 145 (181)
T ss_dssp CCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT--
T ss_pred HHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccC---HHHHHHHHHHcC--
Confidence 7777888899999999999873221 222333333 2 23677 88999999997632211 123344444443
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++...+
T Consensus 146 ---~~~~~~Sa~~~----------~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 146 ---VAYFEASAKLR----------LNVDEAFEQLVRAV 170 (181)
T ss_dssp ---CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ---CeEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 68999999986 34667776665544
No 112
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=6e-20 Score=153.57 Aligned_cols=161 Identities=16% Similarity=0.082 Sum_probs=106.6
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
....++|+++|.+|+|||||+++|++........ ...+.+.. ....++.....+.||||||+.+|
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------------~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~ 69 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYI--------------PTIEDTYR-QVISCDKSVCTLQITDTTGSHQF 69 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTS--------------CCCCEEEE-EEEEETTEEEEEEEEECCGGGSC
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCccc--------------Ccccccee-EEEEECCEEEEEEEEeCCChHHh
Confidence 4456899999999999999999998521110000 00011111 11222333457899999999999
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHH-----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~-----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
...+..++..+|++++|+|+++... .....++..+.. .++| +++|+||+|+...... .++...+.+.++
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~~~~~----~~~~~~~~~~~~ 144 (199)
T 2gf0_A 70 PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQREVD----TREAQAVAQEWK 144 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSSCSSC----HHHHHHHHHHHT
T ss_pred HHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCCccccC----HHHHHHHHHHhC
Confidence 8888888999999999999986322 222233333333 2567 8899999999763211 123344455544
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
++++++||+++ .++.++++++.+.+..
T Consensus 145 -----~~~~~~Sa~~~----------~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 145 -----CAFMETSAKMN----------YNVKELFQELLTLETR 171 (199)
T ss_dssp -----CEEEECBTTTT----------BSHHHHHHHHHHHCSS
T ss_pred -----CeEEEEecCCC----------CCHHHHHHHHHHHHhh
Confidence 57999999997 4688899988887653
No 113
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.82 E-value=4.5e-20 Score=161.15 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=109.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
+..++|+++|++|+|||||+|+|++. ..... ..+|+|+......+...+..+.||||||+.++.
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~------~~~~~----------~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGT------KQYVA----------NWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTT------CEEEE----------ECTTSCCEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCC------CCccc----------CCCCceEEEEEEEEEECCeEEEEEECCCcCccC
Confidence 34579999999999999999999842 21111 123778777777777778899999999977653
Q ss_pred H------HHHHhh--hccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 143 K------NMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 143 ~------~~~~~~--~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
. ....++ ..+|++++|+|++.. .....++..+...++| +++|+||+|+...... ..+..++.+.+
T Consensus 67 ~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~p-vilv~NK~Dl~~~~~i----~~~~~~l~~~l 139 (258)
T 3a1s_A 67 YSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKK-VILAMTAIDEAKKTGM----KIDRYELQKHL 139 (258)
T ss_dssp SSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCC-EEEEEECHHHHHHTTC----CBCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCC-EEEEEECcCCCCccch----HHHHHHHHHHc
Confidence 2 112233 479999999999873 2334455666677899 8899999998653211 11234455555
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+ +|++++||+++ .++.++++.+.+..
T Consensus 140 g-----~~vi~~SA~~g----------~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 140 G-----IPVVFTSSVTG----------EGLEELKEKIVEYA 165 (258)
T ss_dssp C-----SCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred C-----CCEEEEEeeCC----------cCHHHHHHHHHHHh
Confidence 5 68999999997 46888888777654
No 114
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.82 E-value=1.4e-20 Score=155.16 Aligned_cols=164 Identities=21% Similarity=0.177 Sum_probs=102.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
+..++|+++|++|+|||||+++|++....... .+. .+.... ....++.....+.||||||+++|.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~-----------~~t---~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~ 70 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY-----------VPT---VFDNFS-ANVVVNGATVNLGLWDTAGQEDYN 70 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------------CB-CCCC-------CEEECCCC-CTTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------CCe---eeeeEE-EEEEECCEEEEEEEEECCCChhhh
Confidence 34579999999999999999999853110000 000 000000 011122234567799999999988
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhH--HHHHHHHHc--CCCeEEEEEeeccCcChHHHHH-------HHHHHHHHHH
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLE-------LVEMELRELL 211 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~--~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~-------~~~~~~~~~~ 211 (330)
..+..+++.+|++++|+|+++....+.. .++..+... ++| +++|+||+|+.+...... ...++..++.
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~ 149 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK 149 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhhcCcccccccccCCCCCHHHHHHHH
Confidence 8888888899999999999874333222 244444443 677 889999999976433200 0123455566
Q ss_pred HhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 212 ~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+.++. .+++++||+++ .++.++++.+.+.+.
T Consensus 150 ~~~~~----~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 150 KLIGA----PAYIECSSKSQ----------ENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHTC----SEEEECCTTTC----------TTHHHHHHHHHHHHS
T ss_pred HHcCC----CEEEEEECCCC----------CCHHHHHHHHHHHHh
Confidence 66653 58999999997 468889988877554
No 115
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.82 E-value=9.9e-20 Score=151.93 Aligned_cols=160 Identities=18% Similarity=0.147 Sum_probs=101.4
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
.++.++|+++|.+|+|||||+++|+.. . ... . ..|+......++..+..+.+|||||+++|
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~-----~--~~~-~-----------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 86 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLG-----E--IVT-T-----------IPTIGFNVETVEYKNICFTVWDVGGQDKI 86 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSS-----C--CEE-E-----------EEETTEEEEEEEETTEEEEEEECC-----
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhC-----C--ccc-c-----------CCcCceeEEEEEECCEEEEEEECCCCHhH
Confidence 355689999999999999999999732 1 100 0 01111222334556789999999999998
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
...+..++..+|++++|+|+++..... ..+++..+.. .++| +++|+||+|+...... + ++.+.+.....
T Consensus 87 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~i~~~~~~~~~ 160 (192)
T 2b6h_A 87 RPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV-LLVFANKQDMPNAMPV-S----ELTDKLGLQHL 160 (192)
T ss_dssp CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCH-H----HHHHHTTGGGC
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCCCCCH-H----HHHHHhCcccc
Confidence 877778889999999999998753322 2233333322 2566 8899999999764211 1 22222221112
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
....++++++||+++ .++.++++++.+.+.
T Consensus 161 ~~~~~~~~~~SA~~g----------~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 161 RSRTWYVQATCATQG----------TGLYDGLDWLSHELS 190 (192)
T ss_dssp SSCCEEEEECBTTTT----------BTHHHHHHHHHHHTT
T ss_pred cCCceEEEECcCCCc----------CCHHHHHHHHHHHHh
Confidence 224478999999997 468999998887653
No 116
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.82 E-value=8.8e-21 Score=159.36 Aligned_cols=160 Identities=21% Similarity=0.159 Sum_probs=103.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
.+.++|+++|.+|+|||||+++|++......... ..+.+. .....+......+.||||||+++|.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--------------t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~ 86 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDP--------------TVENTY-SKIVTLGKDEFHLHLVDTAGQDEYS 86 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCC--------------CSEEEE-EEEEC----CEEEEEEEECCCCTTC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCC--------------ccceEE-EEEEEECCEEEEEEEEECCCccchH
Confidence 4578999999999999999999985321100000 001111 2223334456788999999999988
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
..+..+++.+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+...... ..++..++.+.++
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~~~~~~~~~-- 160 (201)
T 3oes_A 87 ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPEREV---QAVEGKKLAESWG-- 160 (201)
T ss_dssp CCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGGCCS---CHHHHHHHHHHHT--
T ss_pred HHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCcccccc---CHHHHHHHHHHhC--
Confidence 777888899999999999987432222 223333322 3677 8899999999753221 1123445555554
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++++||+++ .++.++++.+.+.+.
T Consensus 161 ---~~~~~~Sa~~~----------~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 161 ---ATFMESSAREN----------QLTQGIFTKVIQEIA 186 (201)
T ss_dssp ---CEEEECCTTCH----------HHHHHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 58999999997 568888877776553
No 117
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.82 E-value=2.2e-20 Score=157.44 Aligned_cols=159 Identities=16% Similarity=0.110 Sum_probs=102.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|++|+|||||+++|++....... ....+.+.......++.....+.||||||+++|.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 71 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDY--------------ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR 71 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTC--------------CCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------CCcccceeEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 44689999999999999999999853211000 0011222333333333333579999999999988
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..+..+++.+|++++|+|+++...... ..++..+... ++| +++|+||+|+...... ..++..++.+..+
T Consensus 72 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 144 (206)
T 2bcg_Y 72 TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL-KLLVGNKCDLKDKRVV---EYDVAKEFADANK--- 144 (206)
T ss_dssp CCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCS---CHHHHHHHHHHTT---
T ss_pred HHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccc---CHHHHHHHHHHcC---
Confidence 878888899999999999987433222 2334444432 456 8899999999763211 1123444555544
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++++++||+++ .++.++++++...
T Consensus 145 --~~~~~~Sa~~g----------~gi~~l~~~l~~~ 168 (206)
T 2bcg_Y 145 --MPFLETSALDS----------TNVEDAFLTMARQ 168 (206)
T ss_dssp --CCEEECCTTTC----------TTHHHHHHHHHHH
T ss_pred --CeEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 58999999986 3455555555443
No 118
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.82 E-value=7e-20 Score=152.19 Aligned_cols=157 Identities=17% Similarity=0.127 Sum_probs=93.8
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEe--EEEEeeeCCeeEEEEeCCCch
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~--~~~~~~~~~~~i~iiDtPG~~ 139 (330)
.++.++|+++|.+|+|||||+++|++...... . .+++... ....+......+.||||||+.
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---------~--------~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDE---------Y--------DPTIEDSYRKQVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSC---------C--------CTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccc---------c--------CCccceEEEEEEEECCEEEEEEEEECCChH
Confidence 35668999999999999999999985311000 0 0111111 122222233568999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
++...+..++..+|++++|+|+++...... ..++..+.. .++| +++|+||+|+..... ..+++.++.+.+
T Consensus 81 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~----~~~~~~~~~~~~ 155 (190)
T 3con_A 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKCDLPTRTV----DTKQAHELAKSY 155 (190)
T ss_dssp ---------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCS----CHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcCCcccC----CHHHHHHHHHHc
Confidence 998888888999999999999987433222 233333333 2677 889999999876211 122445555655
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+ ++++++||+++ .++.++++++.+.+
T Consensus 156 ~-----~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 181 (190)
T 3con_A 156 G-----IPFIETSAKTR----------QGVEDAFYTLVREI 181 (190)
T ss_dssp T-----CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred C-----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 5 57999999986 45777777766543
No 119
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.82 E-value=5e-20 Score=149.87 Aligned_cols=157 Identities=18% Similarity=0.121 Sum_probs=94.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH-
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK- 143 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~- 143 (330)
.++|+++|.+|+|||||+++|++........ ...+.........++.....+.+|||||+.++..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 67 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE--------------MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW 67 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------------------CEEEEEEEETTEEEEEEEECCCCC------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc--------------CCCcCCeeeEEEEECCeEEEEEEEECCCccccchh
Confidence 4689999999999999999997321110000 0001112222233333346788999999998865
Q ss_pred HHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHHc----CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV----GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~~----~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
....+++.+|++++|+|+++.... ....++..+... ++| +++|+||+|+.+..+. ..++..++.+.++
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 140 (169)
T 3q85_A 68 LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREV---SLEEGRHLAGTLS--- 140 (169)
T ss_dssp --CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT---
T ss_pred hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcchhhcccC---CHHHHHHHHHHcC---
Confidence 444557789999999999873222 223344444332 677 8899999999753221 1224455566654
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++++++||+++ .++.++++.+.+.
T Consensus 141 --~~~~~~Sa~~~----------~~v~~l~~~l~~~ 164 (169)
T 3q85_A 141 --CKHIETSAALH----------HNTRELFEGAVRQ 164 (169)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHH
T ss_pred --CcEEEecCccC----------CCHHHHHHHHHHH
Confidence 58999999996 4578888777654
No 120
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.82 E-value=8.4e-20 Score=152.11 Aligned_cols=157 Identities=19% Similarity=0.189 Sum_probs=104.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
.+..+|+++|++|+|||||+++|.+.... .. ..|.......+...+..+.+|||||++++.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~------~~-------------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 81 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA------TL-------------QPTWHPTSEELAIGNIKFTTFDLGGHIQAR 81 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC------CC-------------CCCCSCEEEEEEETTEEEEEEECCCSGGGT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC------cc-------------ccCCCCCeEEEEECCEEEEEEECCCCHHHH
Confidence 34569999999999999999999853110 00 111111223344566899999999999988
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC--
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK-- 215 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~-- 215 (330)
..+..+++.+|++++|+|+++....+ ...++..+.. .++| +++|+||+|+..... .+++.+.++...
T Consensus 82 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-----~~~~~~~~~~~~~~ 155 (190)
T 1m2o_B 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDAPNAVS-----EAELRSALGLLNTT 155 (190)
T ss_dssp TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCCC-----HHHHHHHTTCSSCC
T ss_pred HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCCCC-----HHHHHHHhCCcccc
Confidence 77778888999999999998754322 2333333322 4667 889999999975211 113333333221
Q ss_pred -----CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 216 -----FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 216 -----~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.....++++++||+++ .++.++++++.+.
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~~g----------~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 156 GSQRIEGQRPVEVFMCSVVMR----------NGYLEAFQWLSQY 189 (190)
T ss_dssp C---CCSSCCEEEEECBTTTT----------BSHHHHHHHHHTT
T ss_pred ccccccccceEEEEEeECCcC----------CCHHHHHHHHHhh
Confidence 1113478999999997 4689999988764
No 121
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.82 E-value=2.8e-20 Score=157.46 Aligned_cols=165 Identities=18% Similarity=0.135 Sum_probs=107.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|++....... .+ ..+... .....++.....+.||||||+++|.
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~-----------~~---t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 71 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-----------IP---TVFDNF-SANVAVDGQIVNLGLWDTAGQEDYS 71 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-----------CC---SSCCCE-EEEEECSSCEEEEEEECCCCCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccC-----------CC---ccceeE-EEEEEECCEEEEEEEEECCCcHHHH
Confidence 45689999999999999999999853111000 00 001111 1122233334688999999999988
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhH--HHHHHHHHc--CCCeEEEEEeeccCcChHHHHHH-----HHHHHHHHHHh
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLEL-----VEMELRELLSF 213 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~--~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~-----~~~~~~~~~~~ 213 (330)
..+..+++.+|++++|+|+++....... .++..+... ++| +++|+||+|+......... ..++..++.+.
T Consensus 72 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (212)
T 2j0v_A 72 RLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ 150 (212)
T ss_dssp C--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH
T ss_pred HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH
Confidence 8777888999999999999874332222 344445444 678 8899999999764321000 12345556666
Q ss_pred cCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 214 ~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
++. .+++++||+++ .++.++++++...+..
T Consensus 151 ~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 151 IGA----AAYIECSSKTQ----------QNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp HTC----SEEEECCTTTC----------TTHHHHHHHHHHHHHC
T ss_pred cCC----ceEEEccCCCC----------CCHHHHHHHHHHHHhh
Confidence 654 58999999997 4588888877765543
No 122
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.82 E-value=1.7e-19 Score=152.90 Aligned_cols=170 Identities=17% Similarity=0.158 Sum_probs=98.5
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC-CeeEEEEeCCCchh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHAD 140 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~ 140 (330)
....++|+++|++|+|||||+++|++..... ....++.......++.. ...+.||||||+.+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 66 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRD-----------------TQTSITDSSAIYKVNNNRGNSLTLIDLPGHES 66 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCC-----------------BCCCCSCEEEEEECSSTTCCEEEEEECCCCHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccc-----------------ccCCcceeeEEEEecCCCccEEEEEECCCChh
Confidence 3456799999999999999999998532100 00112222222333322 57899999999999
Q ss_pred hHH-HHHHhhhccCeEEEEEeCCCCC--chhhHHHHHH-HHH-----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHH
Q 020176 141 YVK-NMITGAAQMDGGILVVSAPDGP--MPQTKEHILL-ARQ-----VGVPSLVCFLNKVDLVEDEELLELVEMELRELL 211 (330)
Q Consensus 141 ~~~-~~~~~~~~~d~~l~vvda~~~~--~~~~~~~l~~-~~~-----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~ 211 (330)
|.. .+..+++.+|++++|+|+++.. .....+.|.. +.. .++| +++|+||+|+...... +.+.+.+.+.+
T Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~~~~~~l~~~l 144 (214)
T 2fh5_B 67 LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPS-LLIACNKQDIAMAKSA-KLIQQQLEKEL 144 (214)
T ss_dssp HHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCE-EEEEEECTTSTTCCCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCC-EEEEEECCCCCCcccH-HHHHHHHHHHH
Confidence 987 5666788999999999997611 1112222222 111 2466 8899999999863221 22333444333
Q ss_pred Hh-------------------cCCC-----------CCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 212 SF-------------------YKFP-----------GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 212 ~~-------------------~~~~-----------~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.. .... ...++++++||+++.... ...++.++++++.+.
T Consensus 145 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~----~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 145 NTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDT----GSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-----------CCBCHHHHHHHHHH
T ss_pred HHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccc----cccChHHHHHHHHHh
Confidence 31 0110 015789999999862110 012477788877653
No 123
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=2.1e-19 Score=168.81 Aligned_cols=154 Identities=22% Similarity=0.218 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh-----
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD----- 140 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~----- 140 (330)
++|+++|.+|+|||||+|+|++. ..+.. +...|+|.+.....+...+..+.+|||||+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~------~~~~v---------~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~ 66 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKK------KKAIV---------EDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDI 66 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEETTEEEEEEECTTTTSSGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC------CCcee---------cCCCCCccceeeEEEEECCeEEEEEECCCccccccch
Confidence 37999999999999999999842 21111 12347777766666777788999999999653
Q ss_pred ----hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHH-HHHHHhcC
Q 020176 141 ----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMEL-RELLSFYK 215 (330)
Q Consensus 141 ----~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~-~~~~~~~~ 215 (330)
+...+..+++.+|++++|+|+..+......+....++..++| +++|+||+|+.... ..+. .++. .++
T Consensus 67 ~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p-~ilv~NK~D~~~~~------~~~~~~~~~-~lg 138 (439)
T 1mky_A 67 ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVD-TILVANKAENLREF------EREVKPELY-SLG 138 (439)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCC-EEEEEESCCSHHHH------HHHTHHHHG-GGS
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEeCCCCcccc------HHHHHHHHH-hcC
Confidence 456677788999999999999998887777777777777899 88999999986420 1122 2332 444
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+ .+++++||+++ .++.+|++.+...++
T Consensus 139 ~----~~~~~iSA~~g----------~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 139 F----GEPIPVSAEHN----------INLDTMLETIIKKLE 165 (439)
T ss_dssp S----CSCEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred C----CCEEEEeccCC----------CCHHHHHHHHHHhcc
Confidence 3 35799999997 457888888776665
No 124
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=2.6e-20 Score=157.57 Aligned_cols=143 Identities=17% Similarity=0.083 Sum_probs=93.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC--eeEEEEeCCCchh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (330)
...++|+++|.+|+|||||+++|++...... ....++.......+...+ ..+.||||||+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPS----------------FITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCS----------------SSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcc----------------cCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 3457999999999999999999984311000 011222222222233333 6789999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
|...+..++..+|++++|+|+++..... ...++..+... ++| +++|+||+|+..... ..++..++.+.++
T Consensus 82 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~----~~~~~~~~~~~~~- 155 (213)
T 3cph_A 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVV----TADQGEALAKELG- 155 (213)
T ss_dssp GTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSE-EEEEEECTTCSSCCS----CHHHHHHHHHHHT-
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccc----CHHHHHHHHHHcC-
Confidence 8877788889999999999998743322 23444444433 566 889999999954211 1123344555554
Q ss_pred CCCCccEEEeecccc
Q 020176 217 PGDEIPIIRGSATSA 231 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~ 231 (330)
++++++||+++
T Consensus 156 ----~~~~~~Sa~~~ 166 (213)
T 3cph_A 156 ----IPFIESSAKND 166 (213)
T ss_dssp ----CCEEECBTTTT
T ss_pred ----CEEEEEeCCCC
Confidence 57999999985
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.82 E-value=6.1e-20 Score=161.66 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=107.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
+.++|+++|++|+|||||+|+|++.. ... ...+|+|.......+...+..+.+|||||+.++..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~------~~~----------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLR------QHV----------GNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA 65 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTC------EEE----------EECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCC------ccc----------CCCCCeEEEeeEEEEEECCceEEEEeCCCcccccc
Confidence 45799999999999999999998431 111 01236777777777777888899999999777533
Q ss_pred ------HHHHhh--hccCeEEEEEeCCCCCchhhHHHHHHHHHcC-CCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 144 ------NMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVG-VPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 144 ------~~~~~~--~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~-~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
....++ ..+|++++|+|++.. ......+..+...+ +| +++|+||+|+...... ......+.+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~----~~~~~~l~~~l 138 (271)
T 3k53_A 66 HSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKN-IILVLNKFDLLKKKGA----KIDIKKMRKEL 138 (271)
T ss_dssp SCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCS-EEEEEECHHHHHHHTC----CCCHHHHHHHH
T ss_pred CCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCC-EEEEEEChhcCccccc----HHHHHHHHHHc
Confidence 222333 579999999999874 34455556666777 78 8899999998753211 11233444455
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+ +|++++||+++ .++.++++.+...+
T Consensus 139 g-----~~~~~~Sa~~g----------~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 139 G-----VPVIPTNAKKG----------EGVEELKRMIALMA 164 (271)
T ss_dssp S-----SCEEECBGGGT----------BTHHHHHHHHHHHH
T ss_pred C-----CcEEEEEeCCC----------CCHHHHHHHHHHHH
Confidence 4 68999999986 45777777776644
No 126
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.6e-20 Score=159.17 Aligned_cols=161 Identities=18% Similarity=0.153 Sum_probs=104.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+|+|++|+|||||+++|++...... .....+.+.......++.....+.||||||+++|.
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD--------------SKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYR 76 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------------------CCSEEEEEEEETTEEEEEEEECCTTTTTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCC--------------CCCcccceeEEEEEEECCEEEEEEEEECCCccchh
Confidence 4568999999999999999999985311100 00111222333333333233678999999999988
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..+..+++.+|++|+|+|+++....+. ..++..+... ++| +++|+||+|+....+. ..++..++.+..+
T Consensus 77 ~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~~~~~~~~~--- 149 (223)
T 3cpj_B 77 AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA-VGLIGNKSDLAHLRAV---PTEESKTFAQENQ--- 149 (223)
T ss_dssp CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CE-EEEEECCGGGGGGCCS---CHHHHHHHHHHTT---
T ss_pred hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccccc---CHHHHHHHHHHcC---
Confidence 777888899999999999987533222 3334444443 566 8899999999753211 1123445555544
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++++||+++ .++.++++++...+.
T Consensus 150 --~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 150 --LLFTETSALNS----------ENVDKAFEELINTIY 175 (223)
T ss_dssp --CEEEECCCC-C----------CCHHHHHHHHHHHHT
T ss_pred --CEEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 68999999986 458888888877654
No 127
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.81 E-value=1e-19 Score=154.57 Aligned_cols=165 Identities=16% Similarity=0.069 Sum_probs=108.1
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
....++|+++|.+|+|||||+++|++.......... .+.+. .....++.....+.||||||+++|
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t--------------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~ 88 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPT--------------VFENY-TACLETEEQRVELSLWDTSGSPYY 88 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCC--------------SEEEE-EEEEEC--CEEEEEEEEECCSGGG
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCe--------------eeeeE-EEEEEECCEEEEEEEEECCCCHhH
Confidence 355689999999999999999999853111000000 01111 112233444567899999999999
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchhh--HHHHHHHHHc--CCCeEEEEEeeccCcChHHHHH---------HHHHHHH
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVCFLNKVDLVEDEELLE---------LVEMELR 208 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~~--~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~---------~~~~~~~ 208 (330)
...+..+++.+|++|+|+|+++...... ..++..+... ++| +++|+||+|+..+..... ...++..
T Consensus 89 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 167 (214)
T 3q3j_B 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC 167 (214)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccchhhhhhhcccccCccCHHHHH
Confidence 8888888999999999999987544332 3444555544 567 889999999975311110 1123455
Q ss_pred HHHHhcCCCCCCccEEEeeccccccCCccccchhh-HHHHHHHHhhhCC
Q 020176 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKA-ILKLMDAVDEYIP 256 (330)
Q Consensus 209 ~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~-i~~ll~~l~~~~~ 256 (330)
++.+.+++ .+++++||+++ .+ +.++++.+...+.
T Consensus 168 ~~~~~~~~----~~~~e~SA~~g----------~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 168 AIAKQLGA----EIYLEGSAFTS----------EKSIHSIFRTASMLCL 202 (214)
T ss_dssp HHHHHHTC----SEEEECCTTTC----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC----CEEEEeccCCC----------cccHHHHHHHHHHHHh
Confidence 66666653 38999999997 55 8888888776553
No 128
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=150.58 Aligned_cols=162 Identities=19% Similarity=0.060 Sum_probs=103.2
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC--eeEEEEeCCCch
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHA 139 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~ 139 (330)
....++|+++|.+|+|||||+++|++....... ..++.......+...+ ..+.||||||++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEY-----------------IPTAFDNFSAVVSVDGRPVRLQLCDTAGQD 79 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC-------------------------CCSSEEEEEEEEETTEEEEEEEEECCCST
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------------CCcccceeEEEEEECCEEEEEEEEECCCCH
Confidence 345689999999999999999999843211100 0111111112223333 467799999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCchhhH--HHHHHHHHc--CCCeEEEEEeeccCcChHHHHHH---------HHHH
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLEL---------VEME 206 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~--~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~---------~~~~ 206 (330)
+|...+..++..+|++++|+|+++....... .++..+... ++| +++|+||+|+......... ..++
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 158 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP-IILVGTQSDLREDVKVLIELDKCKEKPVPEEA 158 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSC-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhchhhhhhhcccccccCCHHH
Confidence 9877777788899999999999874333332 234444443 677 8899999999864321111 1224
Q ss_pred HHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 207 LRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 207 ~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
...+.+.++. .+++++||+++ .++.++++++...+
T Consensus 159 ~~~~~~~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 159 AKLLAEEIKA----ASYIECSALTQ----------KNLKEVFDAAIVAG 193 (201)
T ss_dssp HHHHHHHHTC----SEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHhcCC----cEEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 4555555553 58999999997 45778887776644
No 129
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.81 E-value=3e-20 Score=156.47 Aligned_cols=146 Identities=17% Similarity=0.146 Sum_probs=74.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHH--HHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC--CeeEEEEeCCCc
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKV--LAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA--KRHYAHVDCPGH 138 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~--~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~--~~~i~iiDtPG~ 138 (330)
...++|+++|.+|+|||||+++|++. ...... ....+.........++.. ...+.||||||+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 83 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDY--------------AMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS 83 (208)
T ss_dssp EEEEEEEEC------------------------------------------------CEEEECTTSSEEEEEEEEETTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCC--------------CCccceEEEEEEEEECCcccEEEEEEEECCCc
Confidence 45689999999999999999999853 111000 000011112222223322 467999999999
Q ss_pred hhhHHHHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHH------cCCCeEEEEEeeccCcC-hHHHHHHHHHHHHHH
Q 020176 139 ADYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ------VGVPSLVCFLNKVDLVE-DEELLELVEMELREL 210 (330)
Q Consensus 139 ~~~~~~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~------~~~p~iivviNK~D~~~-~~~~~~~~~~~~~~~ 210 (330)
.+|...+..++..+|++++|+|+++... .....++..+.. .++| +++|+||+|+.. .... ..+++.++
T Consensus 84 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~v---~~~~~~~~ 159 (208)
T 2yc2_C 84 DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR-AVLVANKTDLPPQRHQV---RLDMAQDW 159 (208)
T ss_dssp HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE-EEEEEECC-------CC---CHHHHHHH
T ss_pred HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc-EEEEEECcccchhhccC---CHHHHHHH
Confidence 9999988888999999999999987543 223344444444 3566 889999999976 2211 12345566
Q ss_pred HHhcCCCCCCccEEEeeccc-c
Q 020176 211 LSFYKFPGDEIPIIRGSATS-A 231 (330)
Q Consensus 211 ~~~~~~~~~~~pv~~~Sa~~-~ 231 (330)
.+.++ ++++++||++ +
T Consensus 160 ~~~~~-----~~~~~~Sa~~~~ 176 (208)
T 2yc2_C 160 ATTNT-----LDFFDVSANPPG 176 (208)
T ss_dssp HHHTT-----CEEEECCC----
T ss_pred HHHcC-----CEEEEeccCCCC
Confidence 66655 6899999998 6
No 130
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.81 E-value=6.8e-20 Score=151.90 Aligned_cols=157 Identities=22% Similarity=0.257 Sum_probs=107.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
++.++|+++|++|+|||||+++|++. .... ....+++.......+...+..+.+|||||+.++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~------~~~~----------~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 68 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGE------NVYI----------GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 68 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTT------CEEE----------EECTTSCCEEEEEEEEETTEEEEEEECCCCSCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC------Cccc----------cCCCCeeccceEEEEEeCCcEEEEEECCCcCccc
Confidence 45689999999999999999999842 1111 0112556555555566677899999999987762
Q ss_pred ------HHHHHhhh--ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 143 ------KNMITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 143 ------~~~~~~~~--~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
.....++. .+|++++|+|++. ......++..+...+.| +++|+||+|+...... ..+..++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~----~~~~~~~~~~~ 141 (188)
T 2wjg_A 69 ANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGAN-LLLALNKMDLAKSLGI----EIDVDKLEKIL 141 (188)
T ss_dssp SSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCC-EEEEEECHHHHHHTTC----CCCHHHHHHHH
T ss_pred cccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCC-EEEEEEhhhccccccc----hHHHHHHHHHh
Confidence 22233333 5899999999975 23344455556666788 8899999998653211 11334444554
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
+ ++++++||+++ .++.++++++...+..
T Consensus 142 ~-----~~~~~~Sa~~~----------~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 142 G-----VKVVPLSAAKK----------MGIEELKKAISIAVKD 169 (188)
T ss_dssp T-----SCEEECBGGGT----------BSHHHHHHHHHHHHTT
T ss_pred C-----CCeEEEEecCC----------CCHHHHHHHHHHHHHh
Confidence 4 57999999986 4588888888876653
No 131
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.81 E-value=2.6e-19 Score=148.13 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=104.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|++.......... .+... .....++.....+.||||||+++|.
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t--------------~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 69 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPT--------------VFENY-TASFEIDTQRIELSLWDTSGSPYYD 69 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCC--------------SEEEE-EEEEECSSCEEEEEEEEECCSGGGT
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--------------cceeE-EEEEEECCEEEEEEEEECCCChhhh
Confidence 45689999999999999999999853111000000 01111 1122233344678999999999988
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhh--HHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHH---------HHHHHH
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVCFLNKVDLVEDEELLELV---------EMELRE 209 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~--~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~---------~~~~~~ 209 (330)
..+..++..+|++++|+|+++...... ..++..+... ++| +++|+||+|+.........+ .++..+
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 148 (184)
T 1m7b_A 70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 148 (184)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH
Confidence 777778889999999999987433222 2233334332 566 88999999998532211111 234555
Q ss_pred HHHhcCCCCCCccEEEeecc-ccccCCccccchhhHHHHHHHHhhh
Q 020176 210 LLSFYKFPGDEIPIIRGSAT-SALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 210 ~~~~~~~~~~~~pv~~~Sa~-~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+.+.++. ++++++||+ ++ .++.++++.+.+.
T Consensus 149 ~~~~~~~----~~~~e~Sa~~~~----------~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 149 MAKQIGA----ATYIECSALQSE----------NSVRDIFHVATLA 180 (184)
T ss_dssp HHHHHTC----SEEEECBTTTBH----------HHHHHHHHHHHHH
T ss_pred HHHHcCC----cEEEEeeecCCC----------cCHHHHHHHHHHH
Confidence 6666553 689999998 44 4688888887654
No 132
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=6.1e-20 Score=151.46 Aligned_cols=158 Identities=18% Similarity=0.143 Sum_probs=101.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
++.++|+++|++|+|||||+++|++. . .... . ...+.. ...+...+..+.+|||||+.++.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~-----~-~~~~----~-----~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIG-----E-VVTT----K-----PTIGFN----VETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS-----E-EEEE----C-----SSTTCC----EEEEEETTEEEEEEEEC----CC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC-----C-cCcc----C-----CcCccc----eEEEEECCEEEEEEECCCCHhHH
Confidence 45689999999999999999999732 1 1100 0 001221 12234456889999999999887
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
..+..++..+|++++|+|+++.... ...+++..+.. .++| +++|+||+|+.+.... + ++.+.+......
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~----~i~~~~~~~~~~ 150 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQDQPGALSA-S----EVSKELNLVELK 150 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTCCCH-H----HHHHHTTTTTCC
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCCCCH-H----HHHHHhCccccc
Confidence 7777888899999999999875432 23333443332 3566 8899999999763211 1 233333322232
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
...++++++||+++ .++.++++++.+.+
T Consensus 151 ~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 151 DRSWSIVASSAIKG----------EGITEGLDWLIDVI 178 (183)
T ss_dssp SSCEEEEEEBGGGT----------BTHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCC----------cCHHHHHHHHHHHH
Confidence 34568999999997 46888888877654
No 133
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.81 E-value=1.2e-20 Score=160.48 Aligned_cols=162 Identities=17% Similarity=0.103 Sum_probs=98.6
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC-eeEEEEeCCCch
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHA 139 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~ 139 (330)
+....++|+++|.+|+|||||+++|++.... ... ....+.+............ ..+.||||||+.
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----~~~---------~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFE-----KNY---------NATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTT-----CEE---------ETTTTEEEEEEEEEBTTSCEEEEEEEEECSGG
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCC-----CCC---------CCccceeeEEEEEEeCCCcEEEEEEEecCCch
Confidence 3456789999999999999999999842111 000 0011222222221111122 679999999999
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCchhhH-HHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~-~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
++.......+..+|++++|+|++++...+.. .++..+... ++| +++|+||+|+....+. ..+....+.+..
T Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~- 147 (218)
T 4djt_A 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAP-IVVCANKIDIKNRQKI---SKKLVMEVLKGK- 147 (218)
T ss_dssp GTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSC-EEEEEECTTCC----C---CHHHHHHHTTTC-
T ss_pred hhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccc---CHHHHHHHHHHc-
Confidence 9877777788899999999999885443332 333433332 577 8899999999864221 122333444433
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
.++++++||+++ .++.++++++.+.+
T Consensus 148 ----~~~~~~~Sa~~g----------~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 148 ----NYEYFEISAKTA----------HNFGLPFLHLARIF 173 (218)
T ss_dssp ----CCEEEEEBTTTT----------BTTTHHHHHHHHHH
T ss_pred ----CCcEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 368999999986 23555555555433
No 134
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.81 E-value=1.7e-18 Score=154.96 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=102.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeee-CCeeEEEEeCCCchhhH-
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-AKRHYAHVDCPGHADYV- 142 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~i~iiDtPG~~~~~- 142 (330)
.++|+++|.+|+|||||+++|++. ... ......+.|+......+.. ++..+.+|||||+++|.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~------~~~---------~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 67 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN------YSA---------FDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC------CCT---------GGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC------CCC---------ccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhh
Confidence 579999999999999999999832 111 0111235565555444443 46789999999999983
Q ss_pred ----HHHHHhhhccCeEEEEEeCCCCCchhhHHHH-H---HHHHc--CCCeEEEEEeeccCcChHHHH---HHHHHHHHH
Q 020176 143 ----KNMITGAAQMDGGILVVSAPDGPMPQTKEHI-L---LARQV--GVPSLVCFLNKVDLVEDEELL---ELVEMELRE 209 (330)
Q Consensus 143 ----~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l-~---~~~~~--~~p~iivviNK~D~~~~~~~~---~~~~~~~~~ 209 (330)
......++.+|++++|+|+++....+..+.| . .+... ++| +++|+||+|+...++.. +...+++.+
T Consensus 68 ~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~~~~~r~~~~~v~~~~~~~ 146 (307)
T 3r7w_A 68 NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDLVQLDKREELFQIMMKNLSE 146 (307)
T ss_dssp HHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEecccccchhhhhHHHHHHHHHHHH
Confidence 4445566789999999999886554443322 2 22222 677 88999999998743321 244467778
Q ss_pred HHHhcCCCCCCccEEEeeccc
Q 020176 210 LLSFYKFPGDEIPIIRGSATS 230 (330)
Q Consensus 210 ~~~~~~~~~~~~pv~~~Sa~~ 230 (330)
+.+.+|+ ..++++++||++
T Consensus 147 ~~~~~g~--~~~~~~~tSa~~ 165 (307)
T 3r7w_A 147 TSSEFGF--PNLIGFPTSIWD 165 (307)
T ss_dssp HHHTTTC--CSCEEEECCTTS
T ss_pred HHHHcCC--CCeEEEEeeecC
Confidence 8887764 247899999998
No 135
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.81 E-value=1.2e-19 Score=152.21 Aligned_cols=158 Identities=20% Similarity=0.215 Sum_probs=100.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
.+..+|+++|++|+|||||+++|.+.... .. ..|+......+...+..+.+|||||++++.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~------~~-------------~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 83 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG------QH-------------VPTLHPTSEELTIAGMTFTTFDLGGHIQAR 83 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEETTEEEEEEEECC----C
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC------cc-------------CCCCCceeEEEEECCEEEEEEECCCcHhhH
Confidence 44579999999999999999999742111 00 011111112344556889999999999887
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC--
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK-- 215 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~-- 215 (330)
..+..+++.+|++++|+|+++.... ....++..+.. .++| +++|+||+|+.... -.+++.+.++...
T Consensus 84 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-----~~~~~~~~~~~~~~~ 157 (198)
T 1f6b_A 84 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKIDRPEAI-----SEERLREMFGLYGQT 157 (198)
T ss_dssp CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTCC-----CHHHHHHHHTCTTTC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCccccC-----CHHHHHHHhCccccc
Confidence 7777788899999999999875332 22333333332 3677 88999999997521 1123344443221
Q ss_pred -------CC---CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 216 -------FP---GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 216 -------~~---~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+. ...++++++||+++ +++.++++++.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~SA~~g----------~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 158 TGKGSVSLKELNARPLEVFMCSVLKR----------QGYGEGFRWMAQYI 197 (198)
T ss_dssp CCSSCCCTTTCCSCCEEEEECBTTTT----------BSHHHHHHHHHTTC
T ss_pred ccccccccccccCceEEEEEEECCCC----------CCHHHHHHHHHHhc
Confidence 10 13478999999997 46999999987653
No 136
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=5.4e-20 Score=172.64 Aligned_cols=153 Identities=21% Similarity=0.213 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch------
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA------ 139 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~------ 139 (330)
++|+++|.+|+|||||+|+|++ ...+.. +...|+|.+.....+...+..+.+|||||+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~------~~~~~v---------~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~ 68 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAG------ERISIV---------EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPF 68 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEE------EECC--------------------CEEEECTTCSSCCEEEC---------CH
T ss_pred CEEEEECCCCCCHHHHHHHHhC------CCceee---------cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhH
Confidence 5899999999999999999983 222111 2234777777777777778899999999985
Q ss_pred --hhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 140 --DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 140 --~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
.+...+..++..+|++|+|+|+.++......+....++..++| +++|+||+|+..... +..++. .+++
T Consensus 69 ~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~p-vilv~NK~D~~~~~~-------~~~~~~-~lg~- 138 (436)
T 2hjg_A 69 LAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDNTEMRA-------NIYDFY-SLGF- 138 (436)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSC-EEEEEECCCC------------CCCSSG-GGSS-
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCccchh-------hHHHHH-HcCC-
Confidence 5677778888999999999999999888877777777777888 889999999875321 111122 2333
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
.+++++||+++ .++.+|++++...++
T Consensus 139 ---~~~~~iSA~~g----------~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 139 ---GEPYPISGTHG----------LGLGDLLDAVAEHFK 164 (436)
T ss_dssp ---CCCEECBTTTT----------BTHHHHHHHHHHTGG
T ss_pred ---CCeEEEeCcCC----------CChHHHHHHHHHhcC
Confidence 36899999997 468999999988776
No 137
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=151.14 Aligned_cols=161 Identities=14% Similarity=0.071 Sum_probs=99.1
Q ss_pred cCCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 60 ~~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
......++|+++|.+|+|||||+++|++....... . ...+... .....++.....+.||||||++
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~-----------~---~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 80 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEY-----------D---PNLEDTY-SSEETVDHQPVHLRVMDTADLD 80 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCC-----------C---TTCCEEE-EEEEEETTEEEEEEEEECCC--
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCccc-----------C---CCcccee-eEEEEECCEEEEEEEEECCCCC
Confidence 34456789999999999999999999853211000 0 0001111 1122233334678899999998
Q ss_pred hhHHHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHH------cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH
Q 020176 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (330)
Q Consensus 140 ~~~~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~------~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~ 212 (330)
+|.. +..+++.+|++++|+|+++....+ ...++..+.. .++| +++|+||+|+...... ..++..++.+
T Consensus 81 ~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~~~~~~ 155 (187)
T 3c5c_A 81 TPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQYRQV---TKAEGVALAG 155 (187)
T ss_dssp -CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGGCSS---CHHHHHHHHH
T ss_pred cchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhcCcc---CHHHHHHHHH
Confidence 8754 245778899999999998643222 2333444433 3677 8899999999753211 1224455556
Q ss_pred hcCCCCCCccEEEeec-cccccCCccccchhhHHHHHHHHhhhC
Q 020176 213 FYKFPGDEIPIIRGSA-TSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa-~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
.++ ++++++|| +++ .++.++++.+.+.+
T Consensus 156 ~~~-----~~~~e~Sa~~~g----------~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 156 RFG-----CLFFEVSACLDF----------EHVQHVFHEAVREA 184 (187)
T ss_dssp HHT-----CEEEECCSSSCS----------HHHHHHHHHHHHHH
T ss_pred HcC-----CcEEEEeecCcc----------ccHHHHHHHHHHHH
Confidence 655 58999999 776 56888888876643
No 138
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.81 E-value=1.6e-20 Score=160.18 Aligned_cols=160 Identities=14% Similarity=0.063 Sum_probs=108.1
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (330)
.....++|+++|.+|+|||||+++|+........ ....|.+.......+......+.||||||+++
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY--------------VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEE--------------ETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------CCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence 3456789999999999999999996643221110 11125565555555555567899999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
|...+..+++.+|++++|+|+++....+. ..++..+... ++| +++|+||+|+.+... ..+...+.+..+
T Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~-- 148 (221)
T 3gj0_A 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKV-----KAKSIVFHRKKN-- 148 (221)
T ss_dssp TSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSSSCSS-----CGGGCCHHHHHT--
T ss_pred HhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCccccccc-----cHHHHHHHHHcC--
Confidence 88777788889999999999987543332 2333444332 677 889999999976321 112223344433
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++++.+.+
T Consensus 149 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 149 ---LQYYDISAKSN----------YNFEKPFLWLARKL 173 (221)
T ss_dssp ---CEEEECBGGGT----------BTTTHHHHHHHHHH
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 68999999986 34666666665544
No 139
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.81 E-value=1.4e-19 Score=150.00 Aligned_cols=157 Identities=18% Similarity=0.135 Sum_probs=100.8
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh
Q 020176 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 61 ~~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (330)
...+.++|+++|.+|+|||||+++|++....... .+ .+... .....++.....+.||||||+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~-----------~~----t~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 79 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE-----------SP----EGGRF-KKEIVVDGQSYLLLIRDEGGPPE 79 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC-----------CT----TCEEE-EEEEEETTEEEEEEEEECSSSCC
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc-----------CC----CcceE-EEEEEECCEEEEEEEEECCCChh
Confidence 4466789999999999999999999853111000 00 01111 12223333335678899999988
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
|. +++.+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+...... ....++..++.+.++
T Consensus 80 ~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~-~v~~~~~~~~~~~~~ 152 (184)
T 3ihw_A 80 LQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAISAANPR-VIDDSRARKLSTDLK 152 (184)
T ss_dssp HH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTCBTTBCC-CSCHHHHHHHHHHTT
T ss_pred hh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccc-ccCHHHHHHHHHHcC
Confidence 76 5677999999999987543333 334444443 3567 8899999999521100 111224556666664
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
. ++++++||+++ .++.++++++.+.
T Consensus 153 ~----~~~~e~Sa~~~----------~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 153 R----CTYYETCATYG----------LNVERVFQDVAQK 177 (184)
T ss_dssp T----CEEEEEBTTTT----------BTHHHHHHHHHHH
T ss_pred C----CeEEEecCCCC----------CCHHHHHHHHHHH
Confidence 3 68999999986 4577777777654
No 140
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.80 E-value=1e-19 Score=149.11 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=101.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh--
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY-- 141 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~-- 141 (330)
+..+|+++|.+|+|||||+++|++. ...... ...+++.+.....+...+..+.+|||||+.++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~------~~~~~~---------~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 67 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR------EAAIVT---------DIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD 67 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS------CCSCCC---------SSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC------Ccceee---------CCCCceeceeeEEEEECCeEEEEEECCCcccchh
Confidence 3468999999999999999999842 111100 11244444333344556678999999997542
Q ss_pred ------HHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHH
Q 020176 142 ------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (330)
Q Consensus 142 ------~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~ 212 (330)
.......++.+|++++|+|+++........++..+... ++| +++|+||+|+..... ++.+
T Consensus 68 ~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~----------~~~~ 136 (172)
T 2gj8_A 68 EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP-ITVVRNKADITGETL----------GMSE 136 (172)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCC-EEEEEECHHHHCCCC----------EEEE
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCC-EEEEEECccCCcchh----------hhhh
Confidence 11223457889999999999886555555555555443 577 889999999854210 0001
Q ss_pred hcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 213 ~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
. ...+++++||+++ .++.++++++.+.+.
T Consensus 137 ~-----~~~~~~~~SA~~g----------~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 137 V-----NGHALIRLSARTG----------EGVDVLRNHLKQSMG 165 (172)
T ss_dssp E-----TTEEEEECCTTTC----------TTHHHHHHHHHHHC-
T ss_pred c-----cCCceEEEeCCCC----------CCHHHHHHHHHHHhh
Confidence 1 2368999999997 468999998888765
No 141
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.80 E-value=8.2e-20 Score=160.49 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=105.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH--
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV-- 142 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~-- 142 (330)
.++|+++|++|+|||||+|+|++. ..... ..+|+|+......+.. +..+.+|||||+.+|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~------~~~v~----------~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~ 65 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH------NQRVG----------NWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPY 65 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC------CCCCC----------SSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC------CCccc----------CCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCC
Confidence 468999999999999999999842 11110 1136666655555555 6789999999987763
Q ss_pred ----HHHHHhhh--ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 143 ----KNMITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 143 ----~~~~~~~~--~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
.....++. .+|++++|+|++.. .....++..+...++| +++|+||+|+...... ..+...+.+.++
T Consensus 66 ~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p-~ilv~NK~Dl~~~~~~----~~~~~~l~~~lg- 137 (272)
T 3b1v_A 66 SPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIP-VTIALNMIDVLDGQGK----KINVDKLSYHLG- 137 (272)
T ss_dssp SHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSC-EEEEEECHHHHHHTTC----CCCHHHHHHHHT-
T ss_pred ChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCC-EEEEEEChhhCCcCCc----HHHHHHHHHHcC-
Confidence 22333443 69999999999762 2233444556667899 8899999998643211 112334444444
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+|++++||+++ .++.++++++...+.
T Consensus 138 ----~~vi~~SA~~g----------~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 138 ----VPVVATSALKQ----------TGVDQVVKKAAHTTT 163 (272)
T ss_dssp ----SCEEECBTTTT----------BSHHHHHHHHHHSCT
T ss_pred ----CCEEEEEccCC----------CCHHHHHHHHHHHHh
Confidence 68999999997 468999999887654
No 142
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.80 E-value=1e-19 Score=151.10 Aligned_cols=159 Identities=18% Similarity=0.165 Sum_probs=103.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
++.++|+++|++|+|||||+++|... . .. . .. . ..+.. ...+...+..+.+|||||++++.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~-----~-~~-~-~~--~-----t~~~~----~~~~~~~~~~~~~~Dt~G~~~~~ 80 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLG-----D-VV-T-TV--P-----TVGVN----LETLQYKNISFEVWDLGGQTGVR 80 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCS-----C-CE-E-EC--S-----STTCC----EEEEEETTEEEEEEEECCSSSSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC-----C-CC-C-cC--C-----CCceE----EEEEEECCEEEEEEECCCCHhHH
Confidence 45689999999999999999999631 1 10 0 00 0 01221 12234457899999999999887
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
..+..+++.+|++++|+|+++..... ..+.+..+.. .++| +++|+||+|+...... + ++.+.+......
T Consensus 81 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~----~~~~~~~~~~~~ 154 (189)
T 2x77_A 81 PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQDLPDAASE-A----EIAEQLGVSSIM 154 (189)
T ss_dssp CCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTCCCH-H----HHHHHTTGGGCC
T ss_pred HHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCCCCH-H----HHHHHhChhhcc
Confidence 77777788999999999998754322 2333333332 2566 8899999999864211 1 222222111122
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
...++++++||+++ .++.++++++.+.++
T Consensus 155 ~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 155 NRTWTIVKSSSKTG----------DGLVEGMDWLVERLR 183 (189)
T ss_dssp SSCEEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCc----------cCHHHHHHHHHHHHH
Confidence 23468999999987 468888888776553
No 143
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.80 E-value=8.2e-19 Score=164.75 Aligned_cols=148 Identities=27% Similarity=0.294 Sum_probs=98.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
..++|+++|++|+|||||+|+|++ ........ ..|+|.+.....+...+..+.+|||||+.++..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g------~~~~~v~~---------~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~ 243 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILN------KERALVSP---------IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSR 243 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHT------STTEEECC---------CC------CCEEEEETTEEEEESSCSCC-----
T ss_pred cCceEEEECCCCCCHHHHHHHHhC------CcccccCC---------CCCCcCCceEEEEEECCEEEEEEECCCCccccc
Confidence 457999999999999999999993 32222211 235666655555667788899999999754332
Q ss_pred H------------HHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHH-HHHHHHHHHHHH
Q 020176 144 N------------MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEE-LLELVEMELREL 210 (330)
Q Consensus 144 ~------------~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~-~~~~~~~~~~~~ 210 (330)
. ...++..+|++++|+|+..+...+.......+...++| +++|+||+|+.+..+ ..+.+.+++.+.
T Consensus 244 ~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~ 322 (439)
T 1mky_A 244 VEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA-SVVVFNKWDLVVHREKRYDEFTKLFREK 322 (439)
T ss_dssp ------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSTTGGGCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCCCchhhHHHHHHHHHHHH
Confidence 1 23456789999999999988877777677777778888 889999999986432 123333334333
Q ss_pred HHhcCCCCCCccEEEeecccc
Q 020176 211 LSFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 211 ~~~~~~~~~~~pv~~~Sa~~~ 231 (330)
+.... ..|++++||+++
T Consensus 323 ~~~~~----~~~~~~~SA~~g 339 (439)
T 1mky_A 323 LYFID----YSPLIFTSADKG 339 (439)
T ss_dssp CGGGT----TSCEEECBTTTT
T ss_pred hccCC----CCcEEEEECCCC
Confidence 33332 378999999986
No 144
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.80 E-value=1.9e-20 Score=173.73 Aligned_cols=158 Identities=22% Similarity=0.266 Sum_probs=112.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCe-eEEEEeCCCchhh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKR-HYAHVDCPGHADY 141 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~-~i~iiDtPG~~~~ 141 (330)
...++|+++|++|+|||||+|+|++... . ..+...++|.+.....+...+. .+.||||||+.+|
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~------~---------~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~ 96 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNV------S---------IVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEETTTEEEEEEECSSTTCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCC------C---------ccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc
Confidence 4567999999999999999999984211 1 1122346666665555655554 8999999998765
Q ss_pred -------HHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 142 -------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 142 -------~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
...+..++..+|++|+|+|+ +...++.+++..+...++| +++|+||+|+...... +...++.+.+
T Consensus 97 ~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~p-iIvV~NK~Dl~~~~~~-----~~~~~l~~~~ 168 (423)
T 3qq5_A 97 GELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIP-FVVVVNKIDVLGEKAE-----ELKGLYESRY 168 (423)
T ss_dssp CTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCC-EEEECCCCTTTTCCCT-----HHHHHSSCCT
T ss_pred cchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCC-EEEEEeCcCCCCccHH-----HHHHHHHHHc
Confidence 34456778899999999999 6778888899999999999 8899999999874321 1222333333
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
.++++++||+++ .++.++++.+.+.++.+
T Consensus 169 -----g~~v~~vSAktg----------~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 169 -----EAKVLLVSALQK----------KGFDDIGKTISEILPGD 197 (423)
T ss_dssp -----TCCCCCCSSCCT----------TSTTTHHHHHHHHSCCC
T ss_pred -----CCCEEEEECCCC----------CCHHHHHHHHHHhhhhh
Confidence 368999999986 45778888888877543
No 145
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.80 E-value=1.7e-19 Score=169.96 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=92.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
..++|+++|.+|+|||||+|+|++. ..... ....|+|.+.....+...+..+.||||||+.++..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~------~~a~v---------s~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~ 296 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQ------ERAIV---------SHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGE 296 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEETTEEEEEEC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC------CCccc---------CCCCCceEEEEEEEEEECCeEEEEEECCCCCcchh
Confidence 4578999999999999999999843 11111 12236676666666677788999999999877543
Q ss_pred H--------HHHhhhccCeEEEEEeCCCCCch----hhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHH
Q 020176 144 N--------MITGAAQMDGGILVVSAPDGPMP----QTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELL 211 (330)
Q Consensus 144 ~--------~~~~~~~~d~~l~vvda~~~~~~----~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~ 211 (330)
. +..++..+|++++|+|++++... ...+++..+. ++| +++|+||+|+...... +. +++.
T Consensus 297 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~p-iIvV~NK~Dl~~~~~~-~~--~~l~--- 367 (476)
T 3gee_A 297 EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAK-FLTVANKLDRAANADA-LI--RAIA--- 367 (476)
T ss_dssp -----------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSE-EEEEEECTTSCTTTHH-HH--HHHH---
T ss_pred HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCC-EEEEEECcCCCCccch-hH--HHHH---
Confidence 2 34467789999999999987665 3333333322 566 8899999999875432 11 1222
Q ss_pred HhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 212 ~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+. ++ .+++++||+++ .++.+|++++.+.++
T Consensus 368 ~~-~~----~~~i~vSAktg----------~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 368 DG-TG----TEVIGISALNG----------DGIDTLKQHMGDLVK 397 (476)
T ss_dssp HH-HT----SCEEECBTTTT----------BSHHHHHHHHTHHHH
T ss_pred hc-CC----CceEEEEECCC----------CCHHHHHHHHHHHHh
Confidence 21 22 57999999997 468888888887665
No 146
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.80 E-value=6.8e-19 Score=148.47 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=104.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|++.......... .+... .....++.....+.||||||+++|.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t--------------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 90 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPT--------------VFENY-TASFEIDTQRIELSLWDTSGSPYYD 90 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCC--------------SEEEE-EEEEESSSSEEEEEEEEECCSGGGT
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCc--------------cceeE-EEEEEECCEEEEEEEEeCCCcHhhh
Confidence 45689999999999999999999853111000000 01111 1122233344678999999999987
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhh--HHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHH---------HHHHHH
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVCFLNKVDLVEDEELLELV---------EMELRE 209 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~--~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~---------~~~~~~ 209 (330)
.....++..+|++++|+|+++...... ..++..+... ++| +++|+||+|+.........+ .++..+
T Consensus 91 ~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 169 (205)
T 1gwn_A 91 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 169 (205)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEechhhccchhhhhhhcccccCCCCHHHHHH
Confidence 777778889999999999987433222 2333444432 566 88999999998532211111 224555
Q ss_pred HHHhcCCCCCCccEEEeecc-ccccCCccccchhhHHHHHHHHhhh
Q 020176 210 LLSFYKFPGDEIPIIRGSAT-SALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 210 ~~~~~~~~~~~~pv~~~Sa~-~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+.+.++. ++++++||+ ++ .++.++++.+.+.
T Consensus 170 ~~~~~~~----~~~~e~SAk~~~----------~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 170 MAKQIGA----ATYIECSALQSE----------NSVRDIFHVATLA 201 (205)
T ss_dssp HHHHHTC----SEEEECCTTTCH----------HHHHHHHHHHHHH
T ss_pred HHHHcCC----CEEEEeeeccCC----------cCHHHHHHHHHHH
Confidence 6666553 689999998 44 4688888877653
No 147
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=148.76 Aligned_cols=162 Identities=19% Similarity=0.124 Sum_probs=102.1
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
....++|+++|.+|+|||||+++|++. ..... . ....+.........++.....+.+|||||++++
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~------~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~ 85 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGL------QGDSA-H-------EPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA 85 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCE------ECCGG-G-------TTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhc------cCCcc-C-------CCCcccceEEEEEEECCEEEEEEEEecCCCccc
Confidence 345689999999999999999999621 10000 0 000111222222333333456789999999876
Q ss_pred HH-HHHHhhhccCeEEEEEeCCCCCc-hhhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 142 VK-NMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 142 ~~-~~~~~~~~~d~~l~vvda~~~~~-~~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
.. ....+++.+|++++|+|+++... .....++..+.. .++| +++|+||+|+...... ..++..++.+.++
T Consensus 86 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~~~~a~~~~ 161 (195)
T 3cbq_A 86 GGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREV---SLEEGRHLAGTLS 161 (195)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCTTTCCS---CHHHHHHHHHHTT
T ss_pred hhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeechhccccCCc---CHHHHHHHHHHhC
Confidence 54 44556778999999999987332 223334444443 2677 8899999999753211 1123444555544
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++++||+++ .++.++++.+.+.+.
T Consensus 162 -----~~~~e~Sa~~~----------~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 162 -----CKHIETSAALH----------HNTRELFEGAVRQIR 187 (195)
T ss_dssp -----CEEEEEBTTTT----------BSHHHHHHHHHHHHH
T ss_pred -----CEEEEEcCCCC----------CCHHHHHHHHHHHHH
Confidence 57999999997 458888888876554
No 148
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=3.9e-19 Score=148.57 Aligned_cols=158 Identities=16% Similarity=0.100 Sum_probs=100.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
.+.++|+++|.+|+|||||+++|++...... .. ...+... .....++.....+.||||||+.+ .
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~---------~~-----~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~ 89 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWE---------YD-----PTLESTY-RHQATIDDEVVSMEILDTAGQED-T 89 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSC---------CC-----TTCCEEE-EEEEEETTEEEEEEEEECCCCCC-C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcc---------cC-----CCCCceE-EEEEEECCEEEEEEEEECCCCCc-c
Confidence 4568999999999999999999985311000 00 0001111 11223333346789999999987 5
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCch-hhHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~-~~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
..+..+++.+|++++|+|+++.... ....++..+.. .++| +++|+||+|+....+. ..++..++.+.++
T Consensus 90 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v---~~~~~~~~~~~~~-- 163 (196)
T 2atv_A 90 IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQV---STEEGEKLATELA-- 163 (196)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCCS---CHHHHHHHHHHHT--
T ss_pred cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECccccccccc---CHHHHHHHHHHhC--
Confidence 5566778899999999999873222 22333333332 3677 8899999999763211 1123344455544
Q ss_pred CCCccEEEeeccccccCCccccchh-hHHHHHHHHhhhC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKK-AILKLMDAVDEYI 255 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~-~i~~ll~~l~~~~ 255 (330)
++++++||+++ . ++.++++++.+.+
T Consensus 164 ---~~~~~~Sa~~g----------~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 164 ---CAFYECSACTG----------EGNITEIFYELCREV 189 (196)
T ss_dssp ---SEEEECCTTTC----------TTCHHHHHHHHHHHH
T ss_pred ---CeEEEECCCcC----------CcCHHHHHHHHHHHH
Confidence 68999999986 3 4777777766543
No 149
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.79 E-value=1.3e-18 Score=153.30 Aligned_cols=167 Identities=16% Similarity=0.209 Sum_probs=96.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC--eeEEEEeCCCchh-
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD- 140 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~- 140 (330)
..++|+++|.+|+|||||+|+|++ ........ .........++++......+...+ ..++||||||+.+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~------~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFL------TDLYSPEY--PGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSS------SCC-----------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhC------CCccccCC--CCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 468999999999999999999973 22211100 000001122333333333343333 4899999999732
Q ss_pred ------hHHHH-------HHhhh-------------ccCeEEEEEeCCC-CCchhhHHHHHHHHHcCCCeEEEEEeeccC
Q 020176 141 ------YVKNM-------ITGAA-------------QMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (330)
Q Consensus 141 ------~~~~~-------~~~~~-------------~~d~~l~vvda~~-~~~~~~~~~l~~~~~~~~p~iivviNK~D~ 193 (330)
+.... ..++. .+|+++++++... +......+.+..+.. ++| +|+|+||+|+
T Consensus 79 ~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~p-vi~V~nK~D~ 156 (274)
T 3t5d_A 79 VDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKADT 156 (274)
T ss_dssp SCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSC-EEEEESSGGG
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCC-EEEEEeccCC
Confidence 11111 22222 2678999997665 777778777777766 788 8899999999
Q ss_pred cChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 194 VEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
....+. +...+++.+.++..+ ++++++||+++ +++.++++++...+|
T Consensus 157 ~~~~e~-~~~~~~i~~~l~~~~-----i~v~~~sa~~~----------~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 157 LTPEEC-QQFKKQIMKEIQEHK-----IKIYEFPETDD----------EEENKLVKKIKDRLP 203 (274)
T ss_dssp SCHHHH-HHHHHHHHHHHHHTT-----CCCCCC---------------------CHHHHHTCS
T ss_pred CCHHHH-HHHHHHHHHHHHHcC-----CeEEcCCCCCC----------hhHHHHHHHHhcCCC
Confidence 875543 334446666666654 56888998876 457888888888765
No 150
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.79 E-value=5.9e-19 Score=154.34 Aligned_cols=167 Identities=13% Similarity=0.136 Sum_probs=105.6
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
....++|+|+|++|+|||||+|+|++ ...+.... ...++|.......+...+..+.||||||+.++
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~------~~~~~~~~--------~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~ 84 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILR------KQAFESKL--------GSQTLTKTCSKSQGSWGNREIVIIDTPDMFSW 84 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHT------SCCSCCCT--------TSCCCCCSCEEEEEEETTEEEEEEECCGGGGS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhC------CCCcccCC--------CCCceeeeeEEEEEEeCCCEEEEEECcCCCCC
Confidence 34568999999999999999999983 22111100 01114444444445567789999999997664
Q ss_pred -----------HHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHc-----CCCeEEEEEe-eccCcChHHHHHHHH
Q 020176 142 -----------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-----GVPSLVCFLN-KVDLVEDEELLELVE 204 (330)
Q Consensus 142 -----------~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~-----~~p~iivviN-K~D~~~~~~~~~~~~ 204 (330)
...+..+++.+|++++|+|+.. +..+....+..+... +.| .++|+| |+|+... ...+.+.
T Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~-~i~vv~nK~Dl~~~-~~~~~i~ 161 (260)
T 2xtp_A 85 KDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGH-TIVLFTHKEDLNGG-SLMDYMH 161 (260)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGG-EEEEEECGGGGTTC-CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhcc-EEEEEEcccccCCc-cHHHHHH
Confidence 2333446778999999999985 666666666666654 567 445666 9999853 2222121
Q ss_pred ----HHHHHHHHhcCCCCC-CccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 205 ----MELRELLSFYKFPGD-EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 205 ----~~~~~~~~~~~~~~~-~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+++.++++.++.... ..+ +++||+++ .++.++++.+...++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~~----------~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 162 DSDNKALSKLVAACGGRICAFNN-RAEGSNQD----------DQVKELMDCIEDLLM 207 (260)
T ss_dssp HCCCHHHHHHHHHTTTCEEECCT-TCCHHHHH----------HHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHhCCeEEEecC-cccccccH----------HHHHHHHHHHHHHHH
Confidence 234455665542100 112 78899886 567888877776554
No 151
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.79 E-value=3e-19 Score=168.50 Aligned_cols=156 Identities=21% Similarity=0.204 Sum_probs=109.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC-----
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG----- 137 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG----- 137 (330)
+..++|+|+|.+|+|||||+|+|++ ...... ....|+|.+......+..+..+.+|||||
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~------~~~~~v---------~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~ 85 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAG------ERISIV---------EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 85 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEE------EEEC--------------------CEEEECTTCSSCCEEECCCC-----
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC------CCCccc---------CCCCCcceeEEEEEEEECCceEEEEECCCCCCcc
Confidence 4457999999999999999999983 222111 12347777777777777788999999999
Q ss_pred ---chhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 138 ---HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 138 ---~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
++++...+..++..+|++|+|+|+..+......+.+..+...++| +++|+||+|+....+ ...++. .+
T Consensus 86 ~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~p-vilV~NK~D~~~~~~-------~~~e~~-~l 156 (456)
T 4dcu_A 86 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDNTEMRA-------NIYDFY-SL 156 (456)
T ss_dssp -CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSC-EEEEEECC----------------CCSG-GG
T ss_pred hHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCC-EEEEEECccchhhhh-------hHHHHH-Hc
Confidence 777888888889999999999999999988888888888888889 889999999875321 111111 22
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++ -+++++||+++ .++.+|++.+...++
T Consensus 157 g~----~~~~~iSA~~g----------~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 157 GF----GEPYPISGTHG----------LGLGDLLDAVAEHFK 184 (456)
T ss_dssp SS----SSEEECCTTTC----------TTHHHHHHHHHTTGG
T ss_pred CC----CceEEeecccc----------cchHHHHHHHHhhcc
Confidence 33 34679999987 468899999887765
No 152
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.79 E-value=6.8e-19 Score=159.06 Aligned_cols=159 Identities=19% Similarity=0.155 Sum_probs=103.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
+..++|+|+|.+|+|||||+++|++. . .... ..|+......++..+..+.||||||+++|.
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~------~-~~~~------------~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 223 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLG------E-IVTT------------IPTIGFNVETVEYKNISFTVWDVGGQDKIR 223 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSS------C-CEEE------------EEETTEEEEEEEETTEEEEEEECC-----C
T ss_pred cCcceEEEECCCCccHHHHHHHHhCC------C-CCCc------------ccccceEEEEEecCcEEEEEEECCCCHhHH
Confidence 35579999999999999999999732 1 1000 012223334456677899999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHH-HHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLA-RQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~-~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
..+..++..+|++|+|+|+++..... ..+.+..+ ... ++| +++|+||+|+.+.... + ++...+......
T Consensus 224 ~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~-~----~i~~~~~~~~~~ 297 (329)
T 3o47_A 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSLR 297 (329)
T ss_dssp CSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCH-H----HHHHHHTCTTCC
T ss_pred HHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe-EEEEEECccCCcccCH-H----HHHHHhchhhhh
Confidence 88888899999999999998743322 22233222 222 566 8899999999864321 1 222223222223
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
...++++++||+++ .++.++++.|.+.+.
T Consensus 298 ~~~~~~~~vSAk~g----------~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 298 HRNWYIQATCATSG----------DGLYEGLDWLSNQLR 326 (329)
T ss_dssp SSCEEEEECBTTTT----------BTHHHHHHHHHHHHT
T ss_pred cCCCEEEEEECCCC----------cCHHHHHHHHHHHHH
Confidence 35679999999997 468899988877654
No 153
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.78 E-value=8.1e-19 Score=152.29 Aligned_cols=167 Identities=16% Similarity=0.106 Sum_probs=107.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc----
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH---- 138 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~---- 138 (330)
...++|+++|.+|+|||||+|+|++ ...+.... ...++|.......+...+..++||||||+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~------~~~~~~~~--------~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~ 84 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILG------QRRFFSRL--------GATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQ 84 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHT------SCCC-----------------CCSCEEEEEEETTEEEEEEECCSCSSTT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhC------CCCccccC--------CCCCccccEEEEEEEECCcEEEEEECCCCCCCC
Confidence 4568999999999999999999984 22221100 01134544445556677889999999996
Q ss_pred ----hhhHHHHHHhh----hccCeEEEEEeCCCCCchhhHHHHHHHHHc------CCCeEEEEEeeccCcChHHHHHHHH
Q 020176 139 ----ADYVKNMITGA----AQMDGGILVVSAPDGPMPQTKEHILLARQV------GVPSLVCFLNKVDLVEDEELLELVE 204 (330)
Q Consensus 139 ----~~~~~~~~~~~----~~~d~~l~vvda~~~~~~~~~~~l~~~~~~------~~p~iivviNK~D~~~~~~~~~~~~ 204 (330)
.++...+..++ ..+|++|+|+|+.. ........+..+... +.| +|++.||+|+... +..+.+.
T Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~-iilv~nK~Dl~~~-~~~~~l~ 161 (247)
T 3lxw_A 85 VSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWM-VIVFTRKEDLAGG-SLHDYVS 161 (247)
T ss_dssp HHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGE-EEEEECGGGGTTC-CHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccE-EEEEEchHhcCCC-CHHHHHh
Confidence 55555555554 88999999999974 556666666666553 567 8899999999763 2222222
Q ss_pred ----HHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 205 ----MELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 205 ----~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+.++.+++.++. +++..++...- .....++.+|++.+...++
T Consensus 162 ~~~~~~l~~l~~~~g~-----~~~~~~~~~~~-----~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 162 NTENRALRELVAECGG-----RVCAFDNRATG-----REQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp HCCCHHHHHHHHHTTT-----CEEECCTTCCH-----HHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHcCC-----eEEEEeCCCCc-----cccHHHHHHHHHHHHHHHH
Confidence 356777887763 34444443210 0012467888888877665
No 154
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.65 E-value=1.3e-20 Score=158.66 Aligned_cols=162 Identities=15% Similarity=0.101 Sum_probs=103.6
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
....++|+++|.+|+|||||+++|++........... +... .....++.....+.||||||+++|
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~ 91 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDNY-SANVMVDGKPVNLGLWDTAGQEDY 91 (204)
Confidence 3566899999999999999999998532211100000 0000 111122333456779999999999
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchhhH--HHHHHHHHc--CCCeEEEEEeeccCcChHHHHHH---------HHHHHH
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLEL---------VEMELR 208 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~~~--~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~---------~~~~~~ 208 (330)
...+..+++.+|++++|+|+++....... .++..+... ++| +++|+||+|+.+.....+. ..++..
T Consensus 92 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 170 (204)
T 3th5_A 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 170 (204)
Confidence 88888888999999999999875433332 334444433 677 8899999999864321111 112233
Q ss_pred HHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 209 ~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
++.+.++. .+++++||+++ .++.++++++.+
T Consensus 171 ~~~~~~~~----~~~~~vSA~~g----------~gi~~l~~~l~~ 201 (204)
T 3th5_A 171 AMAKEIGA----VKYLECSALTQ----------RGLKTVFDEAIR 201 (204)
Confidence 33444332 48999999997 457778777654
No 155
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.78 E-value=1.2e-20 Score=158.38 Aligned_cols=161 Identities=16% Similarity=0.137 Sum_probs=100.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|++. ... .......+.+.......++.....+.||||||++++.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 96 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADD------TYT--------ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 96 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCC------CCC--------CHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC------CCC--------CCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHH
Confidence 45689999999999999999998731 100 0111122333333333333333679999999999987
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHHc---CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~~---~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
..+..+++.+|++++|+|+++...... ..++..+... ++| +++|+||+|+.+.... ..++..++.+.++
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~v---~~~~~~~~~~~~~--- 169 (199)
T 3l0i_B 97 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVV---DYTTAKEFADSLG--- 169 (199)
T ss_dssp CCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC--CCC---CSCC-CHHHHTTT---
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCC-EEEEEECccCCccccC---CHHHHHHHHHHcC---
Confidence 777778889999999999987543322 3333444333 566 8899999999753211 0112344455544
Q ss_pred CCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 219 ~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++++++||+++ .++.++++++.+.+.
T Consensus 170 --~~~~~vSA~~g----------~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 170 --IPFLETSAKNA----------TNVEQSFMTMAAEIK 195 (199)
T ss_dssp --CCBCCCCC-------------HHHHHHHHHHTTTTT
T ss_pred --CeEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 67999999997 679999999987664
No 156
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.77 E-value=5e-18 Score=140.65 Aligned_cols=154 Identities=21% Similarity=0.313 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCC--------
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG-------- 137 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG-------- 137 (330)
++|+++|.+|+|||||+++|++..... ...++++.......+. .+.+|||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~ 61 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRR----------------GKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLP 61 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSS----------------SSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCcc----------------CCCCCccceeEEEecC----CEEEEECCCccccccCC
Confidence 589999999999999999998421110 0112344333333332 689999999
Q ss_pred ---chhhHHHHHHhhhc----cCeEEEEEeCCCC-----------CchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHH
Q 020176 138 ---HADYVKNMITGAAQ----MDGGILVVSAPDG-----------PMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEEL 199 (330)
Q Consensus 138 ---~~~~~~~~~~~~~~----~d~~l~vvda~~~-----------~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~ 199 (330)
++.+...+..+++. ++++++|+|+... ...+..+.+..+...++| +++|+||+|+....
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-- 138 (190)
T 2cxx_A 62 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-TIVAVNKLDKIKNV-- 138 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-EEEEEECGGGCSCH--
T ss_pred HHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc-eEEEeehHhccCcH--
Confidence 56666555555443 5566777776431 111223344455566888 88999999998753
Q ss_pred HHHHHHHHHHHHHhcCCCCC--CccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 200 LELVEMELRELLSFYKFPGD--EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~--~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
.++..++.+.++..-. ..+++++||+++ .++.++++++.+.+.
T Consensus 139 ----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~----------~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 139 ----QEVINFLAEKFEVPLSEIDKVFIPISAKFG----------DNIERLKNRIFEVIR 183 (190)
T ss_dssp ----HHHHHHHHHHHTCCGGGHHHHEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhhhhhhccCCcEEEEecCCC----------CCHHHHHHHHHHhcc
Confidence 2234455555554210 247899999997 458888888776543
No 157
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.77 E-value=1.4e-18 Score=143.84 Aligned_cols=169 Identities=16% Similarity=0.155 Sum_probs=98.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEe---eeCCeeEEEEeCCCchhh
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY---ETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~---~~~~~~i~iiDtPG~~~~ 141 (330)
.++|+++|.+|+|||||+++|++... .... ......|.........+ ......+.+|||||+++|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~-----~~~~-------~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 69 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKK-----SDLG-------MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEF 69 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------------------CSEEEEEEEC---------CEEEEEEECSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-----ccCC-------CcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHH
Confidence 36899999999999999999984210 0000 00000122211111111 123567899999999988
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCC-c-hhhHHHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGP-M-PQTKEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~-~-~~~~~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
......+++.+|++++|+|.+++. . .....++..+... +.| +++|.||+|+.......+...+...++.+.+++.
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T 2zej_A 70 YSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTHLDVSDEKQRKACMSKITKELLNKRGFP 148 (184)
T ss_dssp HTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCE-EEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSC
T ss_pred HHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCc-EEEEEECCCcccchhhHHHHHHHHHHHHHhcCCc
Confidence 776677778899999999998752 1 2233344444332 566 8889999999874332222222233333333321
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
...+++++||+++. +++.+|++.+.+.++
T Consensus 149 -~~~~~~~~Sa~~~~---------~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 149 -AIRDYHFVNATEES---------DALAKLRKTIINESL 177 (184)
T ss_dssp -EEEEEEECCTTSCC---------HHHHHHHHHHHHHHH
T ss_pred -chhheEEEecccCc---------hhHHHHHHHHHHHHh
Confidence 11238999999862 257888888776554
No 158
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.77 E-value=1.6e-18 Score=142.23 Aligned_cols=155 Identities=14% Similarity=0.073 Sum_probs=94.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
.+.++|+++|.+|+|||||+++|++..... . . . ..+... .....++.....+.||||||+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~------~---~-~-----t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-- 66 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV------L---E-K-----TESEQY-KKEMLVDGQTHLVLIREEAGAPD-- 66 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC------C---S-S-----CSSSEE-EEEEEETTEEEEEEEEECSSSCC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC------c---C-C-----CcceeE-EEEEEECCEEEEEEEEECCCCch--
Confidence 456899999999999999999998531110 0 0 0 011111 12222333335689999999887
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhhHHH-HHHHHH------cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEH-ILLARQ------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~~~~-l~~~~~------~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
..+++.+|++++|+|+++......... +..+.. .++| +++|+||+|+...... ....++..++.+..+
T Consensus 67 ---~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~v~~~~~~~~~~~~~ 141 (178)
T 2iwr_A 67 ---AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA-LALVGTQDRISASSPR-VVGDARARALXADMK 141 (178)
T ss_dssp ---HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCE-EEEEEECTTCBTTBCC-CSCHHHHHHHHHHHS
T ss_pred ---hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccC-cCCHHHHHHHHHhhc
Confidence 345677999999999987433333322 222322 2566 8899999998421000 001123444444442
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.++++++||+++ .++.++++.+.+.
T Consensus 142 ----~~~~~~~Sa~~~----------~~i~~lf~~l~~~ 166 (178)
T 2iwr_A 142 ----RCSYYETXATYG----------LNVDRVFQEVAQK 166 (178)
T ss_dssp ----SEEEEEEBTTTT----------BTHHHHHHHHHHH
T ss_pred ----CCeEEEEecccc----------CCHHHHHHHHHHH
Confidence 278999999986 3577777766553
No 159
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.77 E-value=1.3e-18 Score=164.23 Aligned_cols=152 Identities=18% Similarity=0.188 Sum_probs=105.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch-hhH-
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA-DYV- 142 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~-~~~- 142 (330)
.++|+++|.+|+|||||+|+|++.. ..... ...++|.+.....+...+..+.||||||+. ++.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~------~a~vs---------~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~ 307 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNED------RAIVT---------DIPGTTRDVISEEIVIRGILFRIVDTAGVRSETND 307 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHT------BCCCC---------CSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCT
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCC------CCccC---------CCCCeeeeeEEEEEecCCeEEEEEECCCccccchh
Confidence 3799999999999999999999541 11111 123566655555566678899999999987 542
Q ss_pred -------HHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 143 -------KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 143 -------~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
..+..++..+|++|+|+|++++...+..+.+..+ .++| +++|+||+|+...... +++.+++ +
T Consensus 308 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~p-iivV~NK~DL~~~~~~-----~~~~~~~---~ 376 (482)
T 1xzp_A 308 LVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKR-YLVVINKVDVVEKINE-----EEIKNKL---G 376 (482)
T ss_dssp TCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSS-EEEEEEECSSCCCCCH-----HHHHHHH---T
T ss_pred hHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCC-EEEEEECcccccccCH-----HHHHHHh---c
Confidence 3456678899999999999887766666665544 3677 8899999999753111 1223322 1
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
...|++++||+++ .++++|++++.+.+
T Consensus 377 ---~~~~~i~iSAktg----------~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 377 ---TDRHMVKISALKG----------EGLEKLEESIYRET 403 (482)
T ss_dssp ---CSTTEEEEEGGGT----------CCHHHHHHHHHHHT
T ss_pred ---CCCcEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 2368999999996 35777777666543
No 160
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.76 E-value=4.1e-18 Score=162.63 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=109.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
+..++|+++|.+|+|||||+++|++.. ... ...|+......++..+..+.||||||+++|.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~-------~~~------------~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 380 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQ-------SVT------------TIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 380 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSS-------CCC------------CCCCSSEEEEEEESSSCEEEEEEECCCGGGS
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCC-------CCC------------cCCccceeEEEEEeCCEEEEEEECCCcHHHH
Confidence 456899999999999999999998531 100 0113333344456677899999999999998
Q ss_pred HHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCC
Q 020176 143 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (330)
Q Consensus 143 ~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (330)
..+..++..+|++|+|+|+++....+. ...+..+.. .++| +|+|+||+|+.+.... + ++.+.+......
T Consensus 381 ~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~-~----~~~~~~~~~~~~ 454 (497)
T 3lvq_E 381 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKP-H----EIQEKLGLTRIR 454 (497)
T ss_dssp GGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSSSSCCCH-H----HHHHHTTCTTCC
T ss_pred HHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCCCcCCCH-H----HHHHHhchhhhh
Confidence 888889999999999999987533222 223333322 3677 8899999999763211 1 222222221122
Q ss_pred CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 218 ~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
...++++++||+++ .|+.+++++|.+.+.
T Consensus 455 ~~~~~~~~~SA~~g----------~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 455 DRNWYVQPSCATSG----------DGLYEGLTWLTSNYK 483 (497)
T ss_dssp SSCEEEEECBTTTT----------BTHHHHHHHHHHHCC
T ss_pred cCCeEEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 34578999999997 568999999888764
No 161
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=4.1e-18 Score=144.21 Aligned_cols=161 Identities=17% Similarity=0.125 Sum_probs=97.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh-h
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD-Y 141 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~-~ 141 (330)
...++|+++|.+|+|||||+++|++ ....... .. ...|.+.......++.....+.+|||+|... +
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~------~~~~~~~----~~---~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~ 101 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAG------VHDSMDS----DC---EVLGEDTYERTLMVDGESATIILLDMWENKGEN 101 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC------CCCTTCC----C------CCTTEEEEEEEETTEEEEEEEECCTTTTHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh------CCCCCCC----cC---CccceeeEEEEEEECCeeeEEEEeecCCCcchh
Confidence 4568999999999999999999983 1110000 00 0012222222333333334678999999877 3
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchh-hHHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~-~~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
......+++.+|++++|+|.++....+ ...++..+.. .++| +++|.||+|+....+.. .++...+...++
T Consensus 102 ~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~r~v~---~~e~~~~a~~~~- 176 (211)
T 2g3y_A 102 EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRCREVS---VSEGRACAVVFD- 176 (211)
T ss_dssp HHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT-
T ss_pred hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHHhcCceEe---HHHHHHHHHHcC-
Confidence 333345567899999999998732222 2233333332 2677 88999999997532111 112233334443
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++.+.+.+
T Consensus 177 ----~~~~e~SAk~g----------~~v~elf~~l~~~i 201 (211)
T 2g3y_A 177 ----CKFIETSAAVQ----------HNVKELFEGIVRQV 201 (211)
T ss_dssp ----CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 67999999997 35777777776644
No 162
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.76 E-value=6.6e-18 Score=152.53 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=108.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC--eeEEEEeCCCchh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (330)
...++|+++|.+|+|||||+++|++...... ..+++.......+...+ ..+.||||||+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------YIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCS-----------------CCCCSEEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcc-----------------cCCcccceeEEEEEECCEEEEEEEEeCCCchh
Confidence 3458999999999999999999985311100 01122222222233333 4566999999999
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchhhH--HHHHHHHHc--CCCeEEEEEeeccCcChHHHHHHH---------HHHH
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLELV---------EMEL 207 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~~~--~~l~~~~~~--~~p~iivviNK~D~~~~~~~~~~~---------~~~~ 207 (330)
|......++..+|++++|+|+++....... .++..+... ++| +++|+||+|+.......+.+ .++.
T Consensus 216 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred hhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCc-EEEEEEchhcccccchhhhccccccccccHHHH
Confidence 988888888999999999999875433332 233444444 678 88999999997643222221 2244
Q ss_pred HHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 208 RELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 208 ~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
.++.+..+. .+++++||+++ .++.++++.+.+.+.
T Consensus 295 ~~~~~~~~~----~~~~~~Sa~~~----------~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 295 LAMAKEIGA----VKYLECSALTQ----------RGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred HHHHHHcCC----cEEEEecCCCC----------cCHHHHHHHHHHHHh
Confidence 556666553 58999999997 468888888876543
No 163
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.74 E-value=3e-18 Score=160.91 Aligned_cols=154 Identities=22% Similarity=0.249 Sum_probs=98.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (330)
..++|+++|++|+|||||+|+|++... ..... ..++|.+.....+...+..+.||||||+.++..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~------a~v~~---------~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~ 287 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDR------AIVTD---------LPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD 287 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHB------SCCSC---------CTTCCHHHHHHEEEETTEEEEECC---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCc------ccccC---------CCCeeEEEEEEEEEECCEEEEEEECCccccchh
Confidence 457899999999999999999986421 11111 123444333333445678899999999876533
Q ss_pred H--------HHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcC
Q 020176 144 N--------MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 144 ~--------~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
. ....+..+|++++|+|++++...+..+++..+. ..| +++|+||+|+.+..... .++.+.
T Consensus 288 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~p-iivV~NK~Dl~~~~~~~---------~~~~~~ 355 (462)
T 3geh_A 288 QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRP-LILVMNKIDLVEKQLIT---------SLEYPE 355 (462)
T ss_dssp -----------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSC-EEEEEECTTSSCGGGST---------TCCCCT
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCc-EEEEEECCCCCcchhhH---------HHHHhc
Confidence 2 334567899999999999987777766665553 356 88999999998753210 111111
Q ss_pred CCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCC
Q 020176 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (330)
Q Consensus 216 ~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~ 257 (330)
...+++++||+++ .|+++|++.+.+.+..
T Consensus 356 ---~~~~~i~iSAktg----------~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 356 ---NITQIVHTAAAQK----------QGIDSLETAILEIVQT 384 (462)
T ss_dssp ---TCCCEEEEBTTTT----------BSHHHHHHHHHHHHTT
T ss_pred ---cCCcEEEEECCCC----------CCHHHHHHHHHHHHhc
Confidence 3468999999997 4688888888776643
No 164
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=144.11 Aligned_cols=168 Identities=11% Similarity=0.131 Sum_probs=99.1
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch--
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA-- 139 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~-- 139 (330)
....++|+++|.+|+|||||+|+|++. ..... .....++|.......+...+..+.||||||+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~------~~~~~--------~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~ 91 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGR------KVFHS--------GTAAKSITKKCEKRSSSWKETELVVVDTPGIFDT 91 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTS------CCSCC---------------CCSCEEEEEEETTEEEEEEECCSCC--
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCC------CcCcc--------CCCCCceeeeEEEEEEEeCCceEEEEECCCccCC
Confidence 356789999999999999999999942 11100 01111344444455566678899999999943
Q ss_pred ---------hhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHH-----HcCCCeEEEEEeeccCcChHHHHHHHH-
Q 020176 140 ---------DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR-----QVGVPSLVCFLNKVDLVEDEELLELVE- 204 (330)
Q Consensus 140 ---------~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~-----~~~~p~iivviNK~D~~~~~~~~~~~~- 204 (330)
.+...+......+|++|+|+|++. ......+.+..+. ....| +++|+||+|+....+..+.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~i~~ 169 (239)
T 3lxx_A 92 EVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSF-MILIFTRKDDLGDTNLHDYLRE 169 (239)
T ss_dssp ---CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGG-EEEEEECGGGC-----------
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccce-EEEEEeCCccCCcccHHHHHHh
Confidence 445555556667899999999974 3334444444432 23346 889999999987543332222
Q ss_pred --HHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 205 --MELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 205 --~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
+.++++++.++. .++++++...- .....++.+|++.+...+
T Consensus 170 ~~~~l~~l~~~~~~-----~~~~~~~~~~~-----~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 170 APEDIQDLMDIFGD-----RYCALNNKATG-----AEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp -CHHHHHHHHHHSS-----SEEECCTTCCH-----HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCC-----EEEEEECCCCc-----cccHHHHHHHHHHHHHHH
Confidence 356777777763 35555544210 011245777777776654
No 165
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.72 E-value=2.7e-18 Score=155.27 Aligned_cols=154 Identities=18% Similarity=0.203 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC-eeEEEEeCCCchh----
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHAD---- 140 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~---- 140 (330)
.+|+++|.+|+|||||+++|+... ... . ....+|.......+...+ ..++||||||+.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~------~~i-~---------~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~ 222 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAK------PKI-A---------DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ 222 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEEC------CEE-S---------STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCC------Ccc-c---------cCCccccCceEEEEEeCCCceEEEecCCCCcccccc
Confidence 368999999999999999997321 110 0 011233333333344443 6899999999654
Q ss_pred ---hHHHHHHhhhccCeEEEEEeCCC---CC-chhhHHHHHHHHHc-----CCCeEEEEEeeccCcChHHHHHHHHHHHH
Q 020176 141 ---YVKNMITGAAQMDGGILVVSAPD---GP-MPQTKEHILLARQV-----GVPSLVCFLNKVDLVEDEELLELVEMELR 208 (330)
Q Consensus 141 ---~~~~~~~~~~~~d~~l~vvda~~---~~-~~~~~~~l~~~~~~-----~~p~iivviNK~D~~~~~~~~~~~~~~~~ 208 (330)
+.......+..+|++|+|+|+++ .. ......++..+..+ ++| +++|+||+|+....+ .+.
T Consensus 223 ~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p-~ilV~NK~Dl~~~~e-------~~~ 294 (342)
T 1lnz_A 223 GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP-QIIVANKMDMPEAAE-------NLE 294 (342)
T ss_dssp TTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC-BCBEEECTTSTTHHH-------HHH
T ss_pred cchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCC-EEEEEECccCCCCHH-------HHH
Confidence 34455556667999999999976 22 22333444555543 577 778999999987432 233
Q ss_pred HHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 209 ~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++.+.+.. ..+++++||+++ .++.+|++++.+.+.
T Consensus 295 ~l~~~l~~---~~~v~~iSA~tg----------~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 295 AFKEKLTD---DYPVFPISAVTR----------EGLRELLFEVANQLE 329 (342)
T ss_dssp HHHHHCCS---CCCBCCCSSCCS----------STTHHHHHHHHHHHT
T ss_pred HHHHHhhc---CCCEEEEECCCC----------cCHHHHHHHHHHHHh
Confidence 33444432 167999999986 457778877777664
No 166
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.72 E-value=2.1e-17 Score=137.78 Aligned_cols=161 Identities=18% Similarity=0.127 Sum_probs=93.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh-
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY- 141 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~- 141 (330)
...++|+++|.+|+|||||+++|++... .... . ....|.+.......++.....+.+|||+|....
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~-----~~~~-----~---~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~ 70 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHD-----SMDS-----D---XEVLGEDTYERTLMVDGESATIILLDMWENKGEN 70 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSC-----CC------------GGGCTTEEEEEEEETTEEEEEEEECCCCC----
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcC-----CcCc-----c---ccccceeEEEEEEEECCeEEEEEEEEeccCcchh
Confidence 3457999999999999999999984310 0000 0 000122322223333333346789999997652
Q ss_pred HHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 142 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 142 ~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
......+++.+|++++|+|.++...... .+++..+.. .++| +++|.||+|+...... ..++...+....+
T Consensus 71 ~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~r~v---~~~~~~~~a~~~~- 145 (192)
T 2cjw_A 71 EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRXREV---SVSEGRAXAVVFD- 145 (192)
T ss_dssp CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT-
T ss_pred hhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCe-EEEEEechhhhccccc---cHHHHHHHHHHhC-
Confidence 1122344567999999999987432222 233333333 2577 8899999999753211 1112223333333
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++++||+++ .++.++++.+.+.+
T Consensus 146 ----~~~~e~SA~~g----------~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 146 ----XKFIETSAAVQ----------HNVKELFEGIVRQV 170 (192)
T ss_dssp ----CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ----CceEEeccccC----------CCHHHHHHHHHHHH
Confidence 57999999996 34777777665543
No 167
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=2e-17 Score=140.46 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=87.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|++|+|||||+++|++..... .... ...++. .......+.+|||||+.++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~----~~~~-----------~~~~~~-----~~~~~~~~~l~Dt~G~~~~~ 69 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVS-----------QEPLSA-----ADYDGSGVTLVDFPGHVKLR 69 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCC-----------SSCEEE-----TTGGGSSCEEEECCCCGGGT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----eeee-----------cCceEE-----EEeeCceEEEEECCCcHHHH
Confidence 456799999999999999999998532110 0000 001110 11144678999999999988
Q ss_pred HHHHHhhhc----cCeEEEEEeCC-CC-CchhhHHHHHHHHH-------cCCCeEEEEEeeccCcCh---HHHHHHHHHH
Q 020176 143 KNMITGAAQ----MDGGILVVSAP-DG-PMPQTKEHILLARQ-------VGVPSLVCFLNKVDLVED---EELLELVEME 206 (330)
Q Consensus 143 ~~~~~~~~~----~d~~l~vvda~-~~-~~~~~~~~l~~~~~-------~~~p~iivviNK~D~~~~---~~~~~~~~~~ 206 (330)
..+..+++. +|++++|+|++ .. .......++..+.. .++| +++|+||+|+... .+..+.+.++
T Consensus 70 ~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~l~~~ 148 (218)
T 1nrj_B 70 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFTARPPSKIKDALESE 148 (218)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCC-EEEEEEchHhcccCCHHHHHHHHHHH
Confidence 777777766 89999999998 32 22223333333222 3677 8899999999864 2333334445
Q ss_pred HHHHHHhcCCCCCCccEEEeeccccc
Q 020176 207 LRELLSFYKFPGDEIPIIRGSATSAL 232 (330)
Q Consensus 207 ~~~~~~~~~~~~~~~pv~~~Sa~~~~ 232 (330)
+..+....+ .+++++||+++.
T Consensus 149 ~~~~~~~~~-----~~~~~~Sa~~~~ 169 (218)
T 1nrj_B 149 IQKVIERRK-----KSLNEVERKINE 169 (218)
T ss_dssp HHHHHHHHH-----HHHHC-------
T ss_pred HHHHHHHHh-----cccccccccccc
Confidence 555554433 578999999863
No 168
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.71 E-value=1.8e-16 Score=144.88 Aligned_cols=156 Identities=19% Similarity=0.186 Sum_probs=99.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh-
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY- 141 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~- 141 (330)
....+|+++|.+|+|||||+|+|++. ..... ...+.|.......+...+..+.+|||||+.++
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~------~~~~~----------~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 228 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA------KPEIA----------SYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRP 228 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS------CCEEE----------CCTTCSSCEEEEEEEETTEEEEEEECTTTSSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC------CCccC----------CCCCeeeceeEEEEEecCceEEEEeCCCccccc
Confidence 45679999999999999999999842 11100 01133333333444555778999999997442
Q ss_pred -------H-HHHHHhhhccCeEEEEEeCCCCC--chh-hHHHHHHHHH-c-CCCeEEEEEeeccCcChHHHHHHHHHHHH
Q 020176 142 -------V-KNMITGAAQMDGGILVVSAPDGP--MPQ-TKEHILLARQ-V-GVPSLVCFLNKVDLVEDEELLELVEMELR 208 (330)
Q Consensus 142 -------~-~~~~~~~~~~d~~l~vvda~~~~--~~~-~~~~l~~~~~-~-~~p~iivviNK~D~~~~~~~~~~~~~~~~ 208 (330)
. .........+|.+++|+|++... ... ..+++..+.. . ++| +++|+||+|+....+. ++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~Dl~~~~~~-----~~~~ 302 (357)
T 2e87_A 229 ISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP-FLVVINKIDVADEENI-----KRLE 302 (357)
T ss_dssp STTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTTTCCHHHH-----HHHH
T ss_pred hhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC-EEEEEECcccCChHHH-----HHHH
Confidence 1 22223334699999999987643 222 2344444443 2 678 8899999999875432 1333
Q ss_pred HHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 209 ~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
++++..+ +|++++||+++ +|++++++++.+.+
T Consensus 303 ~~~~~~~-----~~~~~iSA~~g----------~gi~~l~~~i~~~l 334 (357)
T 2e87_A 303 KFVKEKG-----LNPIKISALKG----------TGIDLVKEEIIKTL 334 (357)
T ss_dssp HHHHHTT-----CCCEECBTTTT----------BTHHHHHHHHHHHH
T ss_pred HHHHhcC-----CCeEEEeCCCC----------cCHHHHHHHHHHHH
Confidence 4444433 68999999986 35677776665543
No 169
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.70 E-value=1.8e-16 Score=144.62 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCc-------
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH------- 138 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~------- 138 (330)
..|+++|++|+|||||+|+|++.... .+...+.|.+.....+...+..+.++||||+
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~----------------~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~ 243 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQK----------------VDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQ 243 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEETTEEEEEEECCCBCSSCCGG
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCcc----------------ccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHH
Confidence 35999999999999999999843110 0111244544444445556688999999996
Q ss_pred --hhhHHHHHHhhhccCeEEEEEeCCCCC--ch-hhHHHHHHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHH
Q 020176 139 --ADYVKNMITGAAQMDGGILVVSAPDGP--MP-QTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELREL 210 (330)
Q Consensus 139 --~~~~~~~~~~~~~~d~~l~vvda~~~~--~~-~~~~~l~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~ 210 (330)
+.| ..+...+..+|++++|+|+++.. .. +.......+.. .++| +++|.||+|+.+... ....+.+..+
T Consensus 244 lve~f-~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~Dl~~~~~--~~~~~~~~~l 319 (364)
T 2qtf_A 244 IVDAF-FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKP-ILVTLNKIDKINGDL--YKKLDLVEKL 319 (364)
T ss_dssp GHHHH-HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCC-EEEEEECGGGCCSCH--HHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCC-EEEEEECCCCCCchH--HHHHHHHHHH
Confidence 223 33455678899999999998753 11 22222333444 3567 889999999986431 1111223333
Q ss_pred HHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 211 ~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
...+.. ...+++++||+++ .++.+|++.+.+.+.
T Consensus 320 ~~~l~~--~~~~~~~~SA~~g----------~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 320 SKELYS--PIFDVIPISALKR----------TNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHCS--CEEEEEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred HHHhcC--CCCcEEEEECCCC----------cCHHHHHHHHHHHhc
Confidence 343311 2357899999986 457778877776554
No 170
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.70 E-value=1e-17 Score=161.17 Aligned_cols=160 Identities=14% Similarity=0.164 Sum_probs=101.3
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeE------EEEe--eeCCeeEEEE
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATA------HVEY--ETAKRHYAHV 133 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~------~~~~--~~~~~~i~ii 133 (330)
....++|+++|.+|+|||||+++|++......... ..|.++... ...+ +.....+.+|
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~--------------t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 103 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQ--------------THGLNVVTKQAPNIKGLENDDELKECLFHFW 103 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--------------ccceEEEEeccccccceeecCCCceEEEEEE
Confidence 45678999999999999999999985432111100 012222111 0011 1235789999
Q ss_pred eCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcC--CCeEEEEEeeccCcChHHHHHHHHHHHHHHH
Q 020176 134 DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG--VPSLVCFLNKVDLVEDEELLELVEMELRELL 211 (330)
Q Consensus 134 DtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~--~p~iivviNK~D~~~~~~~~~~~~~~~~~~~ 211 (330)
||||++.|.......++.+|++|+|+|++.. .....++..+...+ .| +++|+||+|+....+. ..+++++.+
T Consensus 104 Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~~~~~v---~~~~~~~~~ 177 (535)
T 3dpu_A 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSP-VIVVMNKIDENPSYNI---EQKKINERF 177 (535)
T ss_dssp CCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCC-EEEEECCTTTCTTCCC---CHHHHHHHC
T ss_pred ECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCC-EEEEEECCCccccccc---CHHHHHHHH
Confidence 9999988877777778889999999999764 44455666666654 78 8899999999764321 122445555
Q ss_pred HhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 212 ~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
...+ .+++++||+++ .|+.+|++.+...+.
T Consensus 178 ~~~~-----~~~~~vSA~~g----------~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 178 PAIE-----NRFHRISCKNG----------DGVESIAKSLKSAVL 207 (535)
T ss_dssp GGGT-----TCEEECCC---------------CTTHHHHHHHHHT
T ss_pred HhcC-----CceEEEecCcc----------cCHHHHHHHHHHHHh
Confidence 5554 57999999996 345666666655443
No 171
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.69 E-value=1.2e-16 Score=142.28 Aligned_cols=146 Identities=13% Similarity=0.132 Sum_probs=89.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHH---
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK--- 143 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~--- 143 (330)
||+++|..|+|||||++++.+...... ....+.|+......++ ....+.||||||+++|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~---------------~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l 64 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLD---------------TLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSY 64 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGG---------------GTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCc---------------cceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhh
Confidence 588999999999999988763211000 0001223322222222 346799999999999953
Q ss_pred HHHHhhhccCeEEEEEeCCCCCchhhHHHHHH----HHH--cCCCeEEEEEeeccCcChHHHH---HHHHHHHHHHHHhc
Q 020176 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILL----ARQ--VGVPSLVCFLNKVDLVEDEELL---ELVEMELRELLSFY 214 (330)
Q Consensus 144 ~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~----~~~--~~~p~iivviNK~D~~~~~~~~---~~~~~~~~~~~~~~ 214 (330)
.+..+++.++++|+|+|+++. .......|.. +.. .++| +++++||+|+.++++.. ..+..+..+.+...
T Consensus 65 ~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ip-illvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~ 142 (331)
T 3r7w_B 65 DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSIN-IEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLEL 142 (331)
T ss_dssp HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCE-EEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCc-EEEEEECcccCchhhhhhHHHHhhHHHHHHHHhh
Confidence 456778999999999999886 3344444322 222 2567 88999999998754321 22222222222222
Q ss_pred CCCCCCccEEEeeccc
Q 020176 215 KFPGDEIPIIRGSATS 230 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~ 230 (330)
++....++++++||+.
T Consensus 143 ~~~~~~i~f~eTSAkd 158 (331)
T 3r7w_B 143 GLDGVQVSFYLTSIFD 158 (331)
T ss_dssp SCSCCCEEEECCCSSS
T ss_pred cccccCceEEEeccCC
Confidence 2222358999999986
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.69 E-value=8.1e-16 Score=129.60 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=100.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh---
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--- 140 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--- 140 (330)
+..+|+++|++|+|||||+++|++... ... .....|.+.......+. + .+.++||||+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~-----~~~---------~~~~~G~~~~~~~~~~~--~-~~~l~Dt~G~~~~~~ 87 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKS-----LAR---------TSKTPGRTQLINLFEVA--D-GKRLVDLPGYGYAEV 87 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC---------------------------CCEEEEEEE--T-TEEEEECCCCC----
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-----ccc---------ccCCCccceeeEEEEec--C-CEEEEECcCCccccc
Confidence 346899999999999999999984210 000 00112444332222222 2 678999999742
Q ss_pred -------hHHHHHHh---hhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHH
Q 020176 141 -------YVKNMITG---AAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELREL 210 (330)
Q Consensus 141 -------~~~~~~~~---~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~ 210 (330)
+......+ ...+|++++++|+..+......+....+...++| ++++.||+|+.+..+. +...+.++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~nK~D~~s~~~~-~~~~~~~~~~ 165 (210)
T 1pui_A 88 PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIA-VLVLLTKADKLASGAR-KAQLNMVREA 165 (210)
T ss_dssp --CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCHHHH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEecccCCCchhH-HHHHHHHHHH
Confidence 32222222 2468999999999887665555556666778889 7788999999875332 2212355556
Q ss_pred HHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 211 ~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+...+ ..++++|+||+++ .++.++++.+.+..+
T Consensus 166 ~~~~~---~~~~~~~~Sal~~----------~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 166 VLAFN---GDVQVETFSSLKK----------QGVDKLRQKLDTWFS 198 (210)
T ss_dssp HGGGC---SCEEEEECBTTTT----------BSHHHHHHHHHHHHC
T ss_pred HHhcC---CCCceEEEeecCC----------CCHHHHHHHHHHHHh
Confidence 65543 2368899999986 357778887776554
No 173
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.69 E-value=9.7e-17 Score=134.37 Aligned_cols=144 Identities=18% Similarity=0.160 Sum_probs=90.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (330)
.++|+++|++|+|||||+++|++....... ....|.......+.++.....+.+|||||++++...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--------------~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~ 70 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES--------------KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI 70 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----------------CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC--------------CCccceeEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 579999999999999999999853111000 000122222223333333346789999999988666
Q ss_pred HHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCC
Q 020176 145 MITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (330)
Q Consensus 145 ~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
....+..+|++++|+|..+...... ..++..+.. .+.| +++|+||+|+....+. ..++.+.+....+
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~---~~~~a~~l~~~~~----- 141 (199)
T 2f9l_A 71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAV---PTDEARAFAEKNN----- 141 (199)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT-----
T ss_pred hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCc---CHHHHHHHHHHcC-----
Confidence 6666778999999999987433222 233333333 2455 8899999999753211 1123445555543
Q ss_pred ccEEEeecccc
Q 020176 221 IPIIRGSATSA 231 (330)
Q Consensus 221 ~pv~~~Sa~~~ 231 (330)
++++.+||+++
T Consensus 142 ~~~~d~Sal~~ 152 (199)
T 2f9l_A 142 LSFIETSALDS 152 (199)
T ss_dssp CEEEECCTTTC
T ss_pred CeEEEEeCCCC
Confidence 67899999885
No 174
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.69 E-value=9.7e-17 Score=158.21 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=53.1
Q ss_pred eeEEEEeCCCchh---hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHH-HHHHcCCCeEEEEEeeccCcCh
Q 020176 128 RHYAHVDCPGHAD---YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHIL-LARQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 128 ~~i~iiDtPG~~~---~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~-~~~~~~~p~iivviNK~D~~~~ 196 (330)
..++||||||+.+ ....+..++..+|++|+|+|++.+......+.|. .+...+.| +++|+||+|+...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECcccccc
Confidence 4699999999766 3455667788999999999999887776666664 44445778 8899999999754
No 175
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.68 E-value=2.9e-15 Score=131.63 Aligned_cols=180 Identities=12% Similarity=0.050 Sum_probs=104.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+|+|++. ...... ...+.|.......+...+..++||||||+.++.
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~------~~~~~~---------~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE------RVVSIS---------PFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS------CCSCCC---------SSSCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC------Cccccc---------CCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence 45789999999999999999999842 211110 112344444445566678899999999986542
Q ss_pred -------HHHHHh--hhccCeEEEEEeCCC-CCchhhHHHHHHHHHc-C----CCeEEEEEeeccCcChH-----HHHHH
Q 020176 143 -------KNMITG--AAQMDGGILVVSAPD-GPMPQTKEHILLARQV-G----VPSLVCFLNKVDLVEDE-----ELLEL 202 (330)
Q Consensus 143 -------~~~~~~--~~~~d~~l~vvda~~-~~~~~~~~~l~~~~~~-~----~p~iivviNK~D~~~~~-----~~~~~ 202 (330)
..+..+ ...+|++++|+|++. .......+++..+... + .| +++|+||+|+.+++ +..+.
T Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~-iivV~nK~Dl~~~~~~~~~~~~~~ 180 (270)
T 1h65_A 102 YINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK-AIVALTHAQFSPPDGLPYDEFFSK 180 (270)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGG-EEEEEECCSCCCGGGCCHHHHHHH
T ss_pred cchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccC-EEEEEECcccCCcCCCCHHHHHHH
Confidence 222222 236899999998865 3444455666655433 4 35 88999999997643 22222
Q ss_pred HHHHHHHHHHh-cCCC----CCCccEEEeecccc----ccCCc-cccchhhHHHHHHHHhhhCCCC
Q 020176 203 VEMELRELLSF-YKFP----GDEIPIIRGSATSA----LQGKN-EEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 203 ~~~~~~~~~~~-~~~~----~~~~pv~~~Sa~~~----~~g~~-~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
..+.+.+.++. .++. ...+|+..+..... ..++. ......+...|++.|...+...
T Consensus 181 ~~~~l~~~~~~~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~ 246 (270)
T 1h65_A 181 RSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNK 246 (270)
T ss_dssp HHHHHHHHHHHHTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhhhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcC
Confidence 23334443332 1111 01257766654321 11111 1122234668888888766543
No 176
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.68 E-value=1.5e-16 Score=141.80 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=63.7
Q ss_pred CeeEEEEeCCCch-------------hhHHHHHHhhhccCeEE-EEEeCCCCCchhhH-HHHHHHHHcCCCeEEEEEeec
Q 020176 127 KRHYAHVDCPGHA-------------DYVKNMITGAAQMDGGI-LVVSAPDGPMPQTK-EHILLARQVGVPSLVCFLNKV 191 (330)
Q Consensus 127 ~~~i~iiDtPG~~-------------~~~~~~~~~~~~~d~~l-~vvda~~~~~~~~~-~~l~~~~~~~~p~iivviNK~ 191 (330)
...++||||||+. .+...+..++..++.++ +|+|++.+...+.. .++..+...+.| +++|+||+
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~-~i~V~NK~ 202 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQR-TIGVITKL 202 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSS-EEEEEECG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCe-EEEEEEcc
Confidence 3689999999963 34555667777888666 79999887666653 355555556778 88999999
Q ss_pred cCcChHHHHHHHHHHHHHHHHh--cCCCCCCccEEEeecccc
Q 020176 192 DLVEDEELLELVEMELRELLSF--YKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 192 D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~pv~~~Sa~~~ 231 (330)
|+.+.... .. +.++. ..+.....+++++||+++
T Consensus 203 Dl~~~~~~---~~----~~~~~~~~~~~~~~~~v~~~SA~~~ 237 (299)
T 2aka_B 203 DLMDEGTD---AR----DVLENKLLPLRRGYIGVVNRSQKDI 237 (299)
T ss_dssp GGSCTTCC---CH----HHHTTCSSCCTTCEEECCCCCCBCT
T ss_pred ccCCCCch---HH----HHHhCCcCcCCCCcEEEECCChhhc
Confidence 99864320 11 11221 111112357899999985
No 177
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.67 E-value=5.1e-16 Score=135.81 Aligned_cols=118 Identities=12% Similarity=0.076 Sum_probs=79.3
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (330)
.+..++|+++|++|+|||||+|+|++ ...... ....+.|.......+...+..++||||||+.++
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~------~~~~~~---------~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~ 97 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIG------EQVVRV---------SPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHT------SCCSCC---------CSSCC-CCCCEEEEEEETTEEEEEEECCCSEET
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhC------CCCccc---------CCCCCcceeeEEEEEEECCeeEEEEECCCCCCc
Confidence 35678999999999999999999994 221111 111244555555566677889999999998765
Q ss_pred -------HHHHHHhh--hccCeEEEEEeCCC-CCchhhHHHHHHHHHc-C----CCeEEEEEeeccCcC
Q 020176 142 -------VKNMITGA--AQMDGGILVVSAPD-GPMPQTKEHILLARQV-G----VPSLVCFLNKVDLVE 195 (330)
Q Consensus 142 -------~~~~~~~~--~~~d~~l~vvda~~-~~~~~~~~~l~~~~~~-~----~p~iivviNK~D~~~ 195 (330)
.......+ ..+|++++|++.+. ........++..+... + .| +++|+||+|+.+
T Consensus 98 ~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~nK~Dl~~ 165 (262)
T 3def_A 98 GYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCK-TLLVLTHAQFSP 165 (262)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGG-EEEEEECTTCCC
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcC-EEEEEeCcccCC
Confidence 22222222 26899999988865 3444445566555543 2 25 889999999963
No 178
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.66 E-value=8.6e-17 Score=144.45 Aligned_cols=118 Identities=15% Similarity=0.077 Sum_probs=73.9
Q ss_pred CCeeEEEEeCCCchh-------------hHHHHHHhhhccCeEEEEEeC-CCCCchhh-HHHHHHHHHcCCCeEEEEEee
Q 020176 126 AKRHYAHVDCPGHAD-------------YVKNMITGAAQMDGGILVVSA-PDGPMPQT-KEHILLARQVGVPSLVCFLNK 190 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~-------------~~~~~~~~~~~~d~~l~vvda-~~~~~~~~-~~~l~~~~~~~~p~iivviNK 190 (330)
....++||||||+.+ +...+..++..+|++++|+|+ +.+..... ...+..+...+.| +++|+||
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~-~i~v~NK 207 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKR-TIGVITK 207 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSS-EEEEEEC
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCc-EEEEEcC
Confidence 346899999999753 556677788899999999997 44544344 3556666666788 8899999
Q ss_pred ccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 191 VDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 191 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+|+....+. +.+.++.. +.....+++++|+.++.+... ..++.++++.+..+++
T Consensus 208 ~Dl~~~~~~-------~~~~~~~~-~~~~~~~~~~v~~~sa~~~~~----~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 208 LDLMDKGTD-------AMEVLTGR-VIPLTLGFIGVINRSQEDIIA----KKSIRESLKSEILYFK 261 (315)
T ss_dssp TTSSCSSCC-------CHHHHTTS-SSCCTTCEEECCCCCHHHHSS----SCCHHHHHHHHHHHHH
T ss_pred cccCCcchH-------HHHHHhCC-CccCCCCeEEEecCChhhhcc----CCCHHHHHHHHHHHHh
Confidence 999864320 11112211 001125678888887654110 1246666666665554
No 179
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.65 E-value=1.6e-16 Score=144.99 Aligned_cols=175 Identities=20% Similarity=0.158 Sum_probs=103.0
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh-----------hh---hhcCceEEeE-E------
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-----------EE---KKRGITIATA-H------ 120 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~-----------~e---~~~g~t~~~~-~------ 120 (330)
....++|+++|.+|+|||||+++|.......|........++.... .. ...+..+... .
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 3456789999999999999999999877666655443321110000 00 0011111100 0
Q ss_pred ---------EEeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeec
Q 020176 121 ---------VEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKV 191 (330)
Q Consensus 121 ---------~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~ 191 (330)
..++..+..++||||||...-. ...+..+|++++|+|+..+...+... .....+| +++|+||+
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p-~ivVlNK~ 227 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQLQGIK----KGVLELA-DIVVVNKA 227 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGC-SEEEEECC
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcC-CEEEEECC
Confidence 0012356789999999955422 23347899999999987654322211 0113457 66899999
Q ss_pred cCcChHHHHHHHHHHHHHHHHhcCCC--CCCccEEEeeccccccCCccccchhhHHHHHHHHhhhC
Q 020176 192 DLVEDEELLELVEMELRELLSFYKFP--GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (330)
Q Consensus 192 D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~ 255 (330)
|+....+. +...+++.+.+..+... ....|++++||+++ .|+.+|++++..++
T Consensus 228 Dl~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g----------~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 228 DGEHHKEA-RLAARELSAAIRLIYPREALWRPPVLTMSAVEG----------RGLAELWDTVERHR 282 (355)
T ss_dssp CGGGHHHH-HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGT----------BSHHHHHHHHHHHH
T ss_pred CCcChhHH-HHHHHHHHHHHhhccccccCCCCceEEEEcCCC----------CCHHHHHHHHHHHH
Confidence 99864332 33444555555544321 12478999999986 35666666666544
No 180
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=143.21 Aligned_cols=174 Identities=18% Similarity=0.169 Sum_probs=87.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC--eeEEEEeCCCchh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (330)
...++|+|+|++|+|||||+++|++. ..+.... .........+++++......+...+ ..+++|||||+.+
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~------~~~~~~~-~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLT------DLYPERV-IPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTC------CC----------------CEEEEEEEEC----CEEEEEEEEC------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCC------CCCCCCc-ccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccc
Confidence 34579999999999999999998732 1111000 0000111112233332222233233 3689999999843
Q ss_pred hHH-------HHH-------Hhhhc-------------cCeEEEEEeC-CCCCchhhHHHHHHHHHcCCCeEEEEEeecc
Q 020176 141 YVK-------NMI-------TGAAQ-------------MDGGILVVSA-PDGPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (330)
Q Consensus 141 ~~~-------~~~-------~~~~~-------------~d~~l~vvda-~~~~~~~~~~~l~~~~~~~~p~iivviNK~D 192 (330)
+.. ... .+++. +|+++|+|++ ..+......+++..+. .++| +|+|+||+|
T Consensus 108 ~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~p-iIlV~NK~D 185 (361)
T 2qag_A 108 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVN-IVPVIAKAD 185 (361)
T ss_dssp --------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SC-EEEEEECCS
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCC-EEEEEECCC
Confidence 211 111 22222 2568888886 4455555555555442 4677 889999999
Q ss_pred CcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 193 LVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
+....+. ....+++.++++.++ ++++++||+++.+ .+.+..+++.+...+|.+
T Consensus 186 l~~~~ev-~~~k~~i~~~~~~~~-----i~~~~~Sa~~~~~-------~e~~~~l~~~i~~~ip~~ 238 (361)
T 2qag_A 186 TLTLKER-ERLKKRILDEIEEHN-----IKIYHLPDAESDE-------DEDFKEQTRLLKASIPFS 238 (361)
T ss_dssp SSCHHHH-HHHHHHHHHHTTCC------CCSCCCC----------------CHHHHHHHHHTCSCE
T ss_pred CCCHHHH-HHHHHHHHHHHHHCC-----CCEEeCCCcCCCc-------chhHHHHHHHHHhcCCCC
Confidence 9985443 233345555555543 6899999998642 133567777787777644
No 181
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.64 E-value=4.7e-16 Score=135.47 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=55.5
Q ss_pred ccCeEEEEEeCCCC--Cc-hhhHHHHHHHH----HcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccE
Q 020176 151 QMDGGILVVSAPDG--PM-PQTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPI 223 (330)
Q Consensus 151 ~~d~~l~vvda~~~--~~-~~~~~~l~~~~----~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 223 (330)
.+|++|+|+|+++. .. .....++..+. ..++| +++|+||+|+...... ++..++.+.. ..+++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~v-----~~~~~~~~~~----~~~~~ 231 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGVERYI-----RDAHTFALSK----KNLQV 231 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCC-EEEEEECGGGBCHHHH-----HHHHHHHHTS----SSCCE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCC-EEEEEEcccccccHHH-----HHHHHHHHhc----CCCeE
Confidence 68999999999875 33 22333444333 24678 8899999999764322 2445555442 13689
Q ss_pred EEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 224 IRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 224 ~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+++||+++ .++.++++++.+.
T Consensus 232 ~e~SAk~g----------~gv~elf~~l~~~ 252 (255)
T 3c5h_A 232 VETSARSN----------VNVDLAFSTLVQL 252 (255)
T ss_dssp EECBTTTT----------BSHHHHHHHHHHH
T ss_pred EEEECCCC----------CCHHHHHHHHHHH
Confidence 99999997 4588888877654
No 182
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.64 E-value=5.9e-16 Score=128.83 Aligned_cols=157 Identities=17% Similarity=0.099 Sum_probs=98.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC--eeEEEEeCCCchh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (330)
...++|+++|++|+|||||+++|++....... ...++.+.....+...+ ..+.+|||||+.+
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~----------------~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES----------------KSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSC----------------CCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 34579999999999999999999853211000 01122222222233333 3556799999988
Q ss_pred hHHHHHHhhhccCeEEEEEeCCCCCchhh-HHHHHHHHH---cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCC
Q 020176 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 141 ~~~~~~~~~~~~d~~l~vvda~~~~~~~~-~~~l~~~~~---~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
+...+...+..++++++|+|..+....+. ..++..+.. .+.| +++++||+|+....+. ..++.+.+....+
T Consensus 91 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~---~~~~a~~l~~~~~- 165 (191)
T 1oix_A 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAV---PTDEARAFAEKNG- 165 (191)
T ss_dssp SSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHHTT-
T ss_pred hhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcC-
Confidence 76666666778899999999876432222 223333333 2455 8899999998753211 1123445555543
Q ss_pred CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 217 ~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
++++.+||+++ .++.++++.+.+.
T Consensus 166 ----~~~ld~Sald~----------~~v~~l~~~l~~~ 189 (191)
T 1oix_A 166 ----LSFIETSALDS----------TNVEAAFQTILTE 189 (191)
T ss_dssp ----CEEEECCTTTC----------TTHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 67899999986 4578888877653
No 183
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.63 E-value=2.7e-15 Score=136.09 Aligned_cols=173 Identities=17% Similarity=0.137 Sum_probs=97.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh-----------hhh----hcCceEEeEE-------
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-----------EEK----KRGITIATAH------- 120 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~-----------~e~----~~g~t~~~~~------- 120 (330)
.....|+++|++|+|||||++.|++.....|........+..... .+. ..+.-.....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 445689999999999999999999876655544333222111100 000 0000000000
Q ss_pred --------EEeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeecc
Q 020176 121 --------VEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (330)
Q Consensus 121 --------~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D 192 (330)
..+...+..++||||||+.++.... ...+|++++|+|+..+...+.... ...++| .++|+||+|
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p-~ivv~NK~D 205 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDDLQGIKK----GLMEVA-DLIVINKDD 205 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC------CCCCH----HHHHHC-SEEEECCCC
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHHHHHHHH----hhhccc-CEEEEECCC
Confidence 0011346789999999987765443 578999999999976432221111 113457 568999999
Q ss_pred CcChHHHHHHHHHHHHHHHHhcCCC--CCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 193 LVEDEELLELVEMELRELLSFYKFP--GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+....+. ....+++++.+..+... ....+++++||+++ .++.+|++.+...
T Consensus 206 l~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g----------~gi~~L~~~l~~~ 258 (341)
T 2p67_A 206 GDNHTNV-AIARHMYESALHILRRKYDEWQPRVLTCSALEK----------RGIDEIWHAIIDF 258 (341)
T ss_dssp TTCHHHH-HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGT----------BSHHHHHHHHHHH
T ss_pred CCChHHH-HHHHHHHHHHHHhccccccCCCCcEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 9874332 22223455545444321 11368999999986 3466666666553
No 184
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.5e-15 Score=126.10 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=69.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhhH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (330)
...++|+++|.+|+|||||+++|++..... ... ....+++ .+.....+.+|||||+.++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~----~~~---------~~~~~~~-------~~~~~~~~~l~Dt~G~~~~~ 105 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVV---------SQEPLSA-------ADYDGSGVTLVDFPGHVKLR 105 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CCCCTTCSEEEETTCCBSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc----ccc---------cCCCcee-------eeecCCeEEEEECCCCchHH
Confidence 456799999999999999999998531100 000 0000111 11245678999999988775
Q ss_pred HHHHHhhh----ccCeEEEEEeCC-CCCc-hhhHHHHHHHHH-------cCCCeEEEEEeeccCcCh
Q 020176 143 KNMITGAA----QMDGGILVVSAP-DGPM-PQTKEHILLARQ-------VGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 143 ~~~~~~~~----~~d~~l~vvda~-~~~~-~~~~~~l~~~~~-------~~~p~iivviNK~D~~~~ 196 (330)
..+..++. .+|++++|+|++ .... .....++..+.. .++| +++|+||+|+...
T Consensus 106 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFTA 171 (193)
T ss_dssp CCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTTC
T ss_pred HHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCC-EEEEEEchHhcCC
Confidence 44444444 489999999998 3111 122222322221 2677 8899999999864
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.59 E-value=2.8e-15 Score=138.27 Aligned_cols=83 Identities=22% Similarity=0.129 Sum_probs=45.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEE--ee-------------------
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVE--YE------------------- 124 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~--~~------------------- 124 (330)
++|+++|.+|+|||||+|+|++...... ..+++|+...... +.
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~----------------~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~ 64 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIA----------------NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEY 64 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCccc----------------CCCCcccCCceEEEeeccCCchHHhhhhcccccccc
Confidence 3799999999999999999995321110 0112222211110 00
Q ss_pred eC---CeeEEEEeCCCchhh-------HHHHHHhhhccCeEEEEEeCCCC
Q 020176 125 TA---KRHYAHVDCPGHADY-------VKNMITGAAQMDGGILVVSAPDG 164 (330)
Q Consensus 125 ~~---~~~i~iiDtPG~~~~-------~~~~~~~~~~~d~~l~vvda~~~ 164 (330)
.. ...+.||||||+.+. .......++.+|++++|+|+.++
T Consensus 65 ~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 65 RNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred cCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 01 246899999997542 12223456889999999999875
No 186
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=131.18 Aligned_cols=172 Identities=20% Similarity=0.180 Sum_probs=90.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChh--------h------hhc--------------Cce
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPE--------E------KKR--------------GIT 115 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~--------e------~~~--------------g~t 115 (330)
....|+|+|++|+|||||+|+|++.....+....+....+..... + ... |++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 367899999999999999999998665554333322211110000 0 000 000
Q ss_pred EEeE--EEEeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccC
Q 020176 116 IATA--HVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (330)
Q Consensus 116 ~~~~--~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~ 193 (330)
.... ...++..+..+.|+||||..... ......+|++++|+|+..+...+. +.. .....| .++|+||+|+
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~---i~~-~il~~~-~ivVlNK~Dl 224 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQG---IKR-GIIEMA-DLVAVTKSDG 224 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSC-SEEEECCCSG
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHH---hHH-HHHhcC-CEEEEeeecC
Confidence 0000 00012356789999999964221 223567999999999986532221 111 124667 5678999999
Q ss_pred cChHHHHHHHHHHHHHHHHhcCC--CCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 194 VEDEELLELVEMELRELLSFYKF--PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.+.... .....++...++.... .....|++++||+++ .++.+|+++|...
T Consensus 225 ~~~~~~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g----------~Gi~~L~~~I~~~ 276 (349)
T 2www_A 225 DLIVPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSG----------EGISEMWDKMKDF 276 (349)
T ss_dssp GGHHHH-HHHHHHHHHHHTTCC-----CCCEEEECCTTTC----------TTHHHHHHHHHHH
T ss_pred CCchhH-HHHHHHHHHHHHhcCccccCCCceEEEEecCCC----------CCHHHHHHHHHHH
Confidence 864322 1122233333332211 012368999999986 3466666555543
No 187
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.56 E-value=2.1e-14 Score=137.86 Aligned_cols=72 Identities=25% Similarity=0.238 Sum_probs=58.6
Q ss_pred eeEEEEeCCCchh-----------hHHHHHHhhhccCeEEEEEeCCC-CCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 128 RHYAHVDCPGHAD-----------YVKNMITGAAQMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 128 ~~i~iiDtPG~~~-----------~~~~~~~~~~~~d~~l~vvda~~-~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
..++||||||+.+ |...+..++..+|++|+|+|+++ +...+..+++..+...+.| +++|+||+|+.+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p-vilVlNK~Dl~~ 232 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK-IRVVLNKADMVE 232 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG-EEEEEECGGGSC
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC-EEEEEECCCccC
Confidence 3689999999875 66677778889999999999987 5677777777777766778 889999999998
Q ss_pred hHHHH
Q 020176 196 DEELL 200 (330)
Q Consensus 196 ~~~~~ 200 (330)
.+++.
T Consensus 233 ~~el~ 237 (550)
T 2qpt_A 233 TQQLM 237 (550)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 188
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.54 E-value=5.1e-15 Score=125.82 Aligned_cols=168 Identities=16% Similarity=0.153 Sum_probs=95.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCC--hhh-hhcCceEEe-EE---EEe----------ee
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA--PEE-KKRGITIAT-AH---VEY----------ET 125 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~--~~e-~~~g~t~~~-~~---~~~----------~~ 125 (330)
...++|+++|++|+|||||+++|+.......+ ........... ... ...+.+... .. ..+ ..
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~-~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVK-IGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSC-EEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCe-EEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 34578999999999999999999976533211 12111111100 000 111222111 00 001 22
Q ss_pred CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChH-HHHHHHH
Q 020176 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE-ELLELVE 204 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~-~~~~~~~ 204 (330)
.+..+.+|||||+..... ......+.+++|+|+..+... .+......+.| +++|+||+|+.+.. ...+
T Consensus 107 ~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~--- 175 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV----VEKHPEIFRVA-DLIVINKVALAEAVGADVE--- 175 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTC-SEEEEECGGGHHHHTCCHH---
T ss_pred CCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh----hhhhhhhhhcC-CEEEEecccCCcchhhHHH---
Confidence 456799999999521100 011246889999999876422 22223345678 66899999986531 0112
Q ss_pred HHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 205 MELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 205 ~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
++.+.++.++ ...+++++||+++ .++.++++++...+.
T Consensus 176 -~~~~~~~~~~---~~~~i~~~Sa~~g----------~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 176 -KMKADAKLIN---PRAKIIEMDLKTG----------KGFEEWIDFLRGILN 213 (221)
T ss_dssp -HHHHHHHHHC---TTSEEEECBTTTT----------BTHHHHHHHHHHHHC
T ss_pred -HHHHHHHHhC---CCCeEEEeecCCC----------CCHHHHHHHHHHHHH
Confidence 2333333332 2378999999997 468888888876553
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.54 E-value=6.4e-15 Score=134.34 Aligned_cols=97 Identities=14% Similarity=0.122 Sum_probs=59.2
Q ss_pred CeeEEEEeCCCch-------------hhHHHHHHhhhcc-CeEEEEEeCCCCCchhhH-HHHHHHHHcCCCeEEEEEeec
Q 020176 127 KRHYAHVDCPGHA-------------DYVKNMITGAAQM-DGGILVVSAPDGPMPQTK-EHILLARQVGVPSLVCFLNKV 191 (330)
Q Consensus 127 ~~~i~iiDtPG~~-------------~~~~~~~~~~~~~-d~~l~vvda~~~~~~~~~-~~l~~~~~~~~p~iivviNK~ 191 (330)
...++||||||.. .+...+..++..+ +++++|+|++.+...+.. +.+..+...+.| +++|+||+
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~-~i~V~NK~ 207 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQR-TIGVITKL 207 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTT-EEEEEECG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCc-eEEEeccc
Confidence 4689999999953 3344455566555 556667788766655544 255555556788 88999999
Q ss_pred cCcChHHHHHHHHHHHHHHHHh--cCCCCCCccEEEeecccc
Q 020176 192 DLVEDEELLELVEMELRELLSF--YKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 192 D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~pv~~~Sa~~~ 231 (330)
|+.+.... . .++++. +.+.....+++++||+++
T Consensus 208 Dl~~~~~~---~----~~~~~~~~~~l~~~~~~v~~~SA~~~ 242 (353)
T 2x2e_A 208 DLMDEGTD---A----RDVLENKLLPLRRGYIGVVNRSQKDI 242 (353)
T ss_dssp GGSCTTCC---C----HHHHTTCSSCCTTCEEECCCCCHHHH
T ss_pred cccCcchh---H----HHHHhCCcccccCCceEEEeCCcccc
Confidence 99864320 0 111211 111112257889999886
No 190
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.51 E-value=1e-13 Score=120.91 Aligned_cols=176 Identities=19% Similarity=0.176 Sum_probs=99.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCC--------------hhhh--hcCceEEeEEE-----
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA--------------PEEK--KRGITIATAHV----- 121 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~--------------~~e~--~~g~t~~~~~~----- 121 (330)
+....+++.|..|+|||||++.|..... .|+.......+.... ..+. ..+........
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDR 90 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHH
Confidence 4456789999999999999999997766 665444332111100 0000 00000000000
Q ss_pred -------------EeeeCCeeEEEEeCCCchhhHHH------HHHhhhccCeEEEEEeCCCCCchhhHH-H----HHHHH
Q 020176 122 -------------EYETAKRHYAHVDCPGHADYVKN------MITGAAQMDGGILVVSAPDGPMPQTKE-H----ILLAR 177 (330)
Q Consensus 122 -------------~~~~~~~~i~iiDtPG~~~~~~~------~~~~~~~~d~~l~vvda~~~~~~~~~~-~----l~~~~ 177 (330)
.+ .....++||||||..++... +...+.. +++++++|+.......... . +....
T Consensus 91 ~~~~~~~l~~~l~~~-~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 168 (262)
T 1yrb_A 91 LMEKFNEYLNKILRL-EKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL 168 (262)
T ss_dssp HHTTHHHHHHHHHHH-HHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHH-hhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc
Confidence 00 11247999999998775422 2234455 8889999987654433322 1 12233
Q ss_pred HcCCCeEEEEEeeccCcChHHHHHHHHHHH---HH---------------------HHHhcCCCCCCccEEEeecccccc
Q 020176 178 QVGVPSLVCFLNKVDLVEDEELLELVEMEL---RE---------------------LLSFYKFPGDEIPIIRGSATSALQ 233 (330)
Q Consensus 178 ~~~~p~iivviNK~D~~~~~~~~~~~~~~~---~~---------------------~~~~~~~~~~~~pv~~~Sa~~~~~ 233 (330)
..++| +++|+||+|+....+. +.+.+.+ .. +++.++. ..+++++||+++
T Consensus 169 ~~~~p-~~iv~NK~D~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~SA~~~-- 241 (262)
T 1yrb_A 169 RLGAT-TIPALNKVDLLSEEEK-ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP---PVRVLYLSAKTR-- 241 (262)
T ss_dssp HHTSC-EEEEECCGGGCCHHHH-HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC---CCCCEECCTTTC--
T ss_pred ccCCC-eEEEEecccccccccH-HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC---cccceEEEecCc--
Confidence 45788 7789999999875322 1122111 11 1233332 257999999986
Q ss_pred CCccccchhhHHHHHHHHhhhCC
Q 020176 234 GKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 234 g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
.++.+|++++.+.++
T Consensus 242 --------~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 242 --------EGFEDLETLAYEHYC 256 (262)
T ss_dssp --------TTHHHHHHHHHHHHH
T ss_pred --------ccHHHHHHHHHHHhc
Confidence 468888888776543
No 191
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.49 E-value=1.7e-13 Score=126.72 Aligned_cols=153 Identities=24% Similarity=0.302 Sum_probs=91.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC-eeEEEEeCCCchh-----
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHAD----- 140 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~----- 140 (330)
.|+|+|++|+|||||+++|++. ..... + ...+|.......+...+ ..++++||||+.+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~------~~~i~----~------~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~ 222 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRA------HPKIA----P------YPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG 222 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSS------CCEEC----C------CTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS
T ss_pred EEEEECCCCCcHHHHHHHHHcC------Ccccc----C------cccceecceeeEEEecCcceEEEEeccccccchhhh
Confidence 5899999999999999999842 11110 0 01122222222233333 6799999999743
Q ss_pred --hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHH-----cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHh
Q 020176 141 --YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (330)
Q Consensus 141 --~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~-----~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~ 213 (330)
+.......+..+|.+++++|++.....+.......+.. ...| .++|+||+|+... +.. +++.+.++.
T Consensus 223 ~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P-~ILVlNKlDl~~~-~~~----~~l~~~l~~ 296 (416)
T 1udx_A 223 KGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRP-SLVALNKVDLLEE-EAV----KALADALAR 296 (416)
T ss_dssp CCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSC-EEEEEECCTTSCH-HHH----HHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCC-EEEEEECCChhhH-HHH----HHHHHHHHh
Confidence 11223344567999999999972111122222222221 3578 6678899999874 322 234444444
Q ss_pred cCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 214 ~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
.+ .+++++||+++ +++.+|++.+.+.+.
T Consensus 297 ~g-----~~vi~iSA~~g----------~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 297 EG-----LAVLPVSALTG----------AGLPALKEALHALVR 324 (416)
T ss_dssp TT-----SCEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred cC-----CeEEEEECCCc----------cCHHHHHHHHHHHHH
Confidence 33 67999999986 457777777766553
No 192
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.48 E-value=2.9e-14 Score=130.35 Aligned_cols=96 Identities=17% Similarity=0.119 Sum_probs=61.5
Q ss_pred CeeEEEEeCCCchhh-------------HHHHHHhhhccCeEEEEEeCCCCC-c-hhhHHHHHHHHHcCCCeEEEEEeec
Q 020176 127 KRHYAHVDCPGHADY-------------VKNMITGAAQMDGGILVVSAPDGP-M-PQTKEHILLARQVGVPSLVCFLNKV 191 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~-------------~~~~~~~~~~~d~~l~vvda~~~~-~-~~~~~~l~~~~~~~~p~iivviNK~ 191 (330)
...++||||||+.++ ...+..++..+|++|+|+|+.... . ......+..+...+.| +++|+||+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~-~i~V~nK~ 213 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDR-TFGVLTKI 213 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTT-EEEEEECG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCC-EEEEEeCC
Confidence 457999999997765 556677788999999999875422 2 2223333333445677 88999999
Q ss_pred cCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeecccc
Q 020176 192 DLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 192 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~ 231 (330)
|+.+.... ..+.++.... ....+++++|++++
T Consensus 214 Dl~~~~~~-------~~~~~~~~~~-~~~~~~~~v~~~s~ 245 (360)
T 3t34_A 214 DLMDKGTD-------AVEILEGRSF-KLKYPWVGVVNRSQ 245 (360)
T ss_dssp GGCCTTCC-------SHHHHTTSSS-CCSSCCEEECCCCH
T ss_pred ccCCCccc-------HHHHHcCccc-cccCCeEEEEECCh
Confidence 99864321 1122222211 13367888998875
No 193
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.47 E-value=4.8e-14 Score=138.40 Aligned_cols=163 Identities=12% Similarity=0.118 Sum_probs=93.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHH-hcCccceee--------------ccccC---C---C----h------hhh-
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLA-EEGKAKAIA--------------FDEID---K---A----P------EEK- 110 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~-~~g~~~~~~--------------~~~~~---~---~----~------~e~- 110 (330)
-..++|+|+|.+++|||||+|+|++... ..|...... ..... . . . ...
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3456999999999999999999996422 222111000 00000 0 0 0 000
Q ss_pred ---hcCceEEeEEEEeee-CCeeEEEEeCCCchh-------------hHHHHHHhh-hccCeEEEEEeCCCCCchhhH-H
Q 020176 111 ---KRGITIATAHVEYET-AKRHYAHVDCPGHAD-------------YVKNMITGA-AQMDGGILVVSAPDGPMPQTK-E 171 (330)
Q Consensus 111 ---~~g~t~~~~~~~~~~-~~~~i~iiDtPG~~~-------------~~~~~~~~~-~~~d~~l~vvda~~~~~~~~~-~ 171 (330)
..+++.......+.. ....++|+||||... +...+..++ ..+|++++|+|++.+...+.. .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 122332222233322 335799999999432 233334444 368999999999988776665 5
Q ss_pred HHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeecccc
Q 020176 172 HILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 172 ~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~ 231 (330)
.+..+...+.| +|+|+||+|+.+...... .+.. .+.+.+.....+++++||+++
T Consensus 209 ll~~L~~~g~p-vIlVlNKiDlv~~~~~~~----~il~-~~~~~l~lg~~~VV~iSA~~G 262 (772)
T 3zvr_A 209 IAKEVDPQGQR-TIGVITKLDLMDEGTDAR----DVLE-NKLLPLRRGYIGVVNRSQKDI 262 (772)
T ss_dssp HHHHHCTTCSS-EEEEEECTTSSCTTCCSH----HHHT-TCSSCCSSCEEECCCCCCEES
T ss_pred HHHHHHhcCCC-EEEEEeCcccCCcchhhH----HHHH-HHhhhhhccCCceEEeccccc
Confidence 66777777888 889999999987432111 1111 011111112367888999885
No 194
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.45 E-value=5.6e-13 Score=123.33 Aligned_cols=152 Identities=16% Similarity=0.195 Sum_probs=81.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHh-cCccceeeccccCCChhhhhcCceEEeEEEEee--eCCeeEEEEeCCCch
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAE-EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE--TAKRHYAHVDCPGHA 139 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~--~~~~~i~iiDtPG~~ 139 (330)
.-.++|+|+|++|+|||||++.|++.... .+... ... ..............+. .....+++|||||+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~------~~~---~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~ 99 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPG------PSH---RIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 99 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCS------CC--------CCEEEEEECC------CEEEEEEECC---
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCC------ccc---CCccceeeeeEEEEEecCCcccceeeeechhhh
Confidence 34468999999999999999999853221 11000 000 0000111111111111 112468999999987
Q ss_pred hhHH------HH--------HH-----------hhhc--cCeEEEEEeCC-CCCchhhHHHHHHHHHcCCCeEEEEEeec
Q 020176 140 DYVK------NM--------IT-----------GAAQ--MDGGILVVSAP-DGPMPQTKEHILLARQVGVPSLVCFLNKV 191 (330)
Q Consensus 140 ~~~~------~~--------~~-----------~~~~--~d~~l~vvda~-~~~~~~~~~~l~~~~~~~~p~iivviNK~ 191 (330)
.+.. .+ .. .+.. +|+++|+++++ .++.....+++..+.. +++ +|+|+||+
T Consensus 100 ~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~-iIlVinK~ 177 (418)
T 2qag_C 100 DAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKA 177 (418)
T ss_dssp --------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSE-EEEEEEST
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCc-EEEEEEcc
Confidence 6421 11 01 1122 34567777765 5777776667666653 667 88999999
Q ss_pred cCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeecccc
Q 020176 192 DLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 192 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~ 231 (330)
|+....++ ....+++.+.++..+ ++++.+|++++
T Consensus 178 Dll~~~ev-~~~k~~i~~~~~~~~-----i~~~~~sa~~~ 211 (418)
T 2qag_C 178 DTLTPEEC-QQFKKQIMKEIQEHK-----IKIYEFPETDD 211 (418)
T ss_dssp TSSCHHHH-HHHHHHHHHHHHHHT-----CCCCCCC----
T ss_pred cCccHHHH-HHHHHHHHHHHHHcC-----CeEEeCCCCCC
Confidence 99885543 444557777777765 56888898775
No 195
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.42 E-value=1e-12 Score=118.81 Aligned_cols=160 Identities=18% Similarity=0.116 Sum_probs=83.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh-------hhhhcCc-----eEEeEE-----------
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-------EEKKRGI-----TIATAH----------- 120 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~-------~e~~~g~-----t~~~~~----------- 120 (330)
+...++|+|++|+|||||++.|.+.....+.............. ....-+. ......
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 34579999999999999999999876554433322221110000 0000000 000000
Q ss_pred -------EEeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccC
Q 020176 121 -------VEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (330)
Q Consensus 121 -------~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~ 193 (330)
..++..+..+.|+||||..+-.. .....+|++++|+|+..+...+ .+.. ....++ .++++||+|+
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~---~i~~-~i~~~~-~ivvlNK~Dl 205 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQ---GIKK-GIFELA-DMIAVNKADD 205 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC---------CCT-THHHHC-SEEEEECCST
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHH---HHHH-HHhccc-cEEEEEchhc
Confidence 00223577899999999654221 2235799999999986432111 0000 001235 3467899997
Q ss_pred cChHHHHHHHHHHHHHHHHhcCCC--CCCccEEEeecccc
Q 020176 194 VEDEELLELVEMELRELLSFYKFP--GDEIPIIRGSATSA 231 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~pv~~~Sa~~~ 231 (330)
....+......+++...+..+... ....|++++||+++
T Consensus 206 ~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g 245 (337)
T 2qm8_A 206 GDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHG 245 (337)
T ss_dssp TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTT
T ss_pred cCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCC
Confidence 653332222233444333322210 01367999999985
No 196
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.42 E-value=1.2e-12 Score=116.42 Aligned_cols=151 Identities=19% Similarity=0.184 Sum_probs=76.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHH-HHh-cCccceeeccccCCChhhhhcCceEEeEEEEe--eeCCeeEEEEeCCCc-
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKV-LAE-EGKAKAIAFDEIDKAPEEKKRGITIATAHVEY--ETAKRHYAHVDCPGH- 138 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~-~~~-~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~--~~~~~~i~iiDtPG~- 138 (330)
-.++|+++|++|+|||||+++|.+. ... .| ........ . .+.........+ ......+++|||||+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g--i~~~g~~~--~-----~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERV--ISGAAEKI--E-----RTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC---------------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCC--cccCCccc--C-----CcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 4578999999999999999998753 211 11 00000000 0 001111111111 122357899999998
Q ss_pred ------hhhHHHHH-------Hhhh-------------ccCeEEEEEeCCC-CCchhhHHHHHHHHHcCCCeEEEEEeec
Q 020176 139 ------ADYVKNMI-------TGAA-------------QMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCFLNKV 191 (330)
Q Consensus 139 ------~~~~~~~~-------~~~~-------------~~d~~l~vvda~~-~~~~~~~~~l~~~~~~~~p~iivviNK~ 191 (330)
+.+..... .++. .+++++++++++. ++.....+.+..+. .+++ +++|+||.
T Consensus 88 ~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~-iilV~~K~ 165 (301)
T 2qnr_A 88 DAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVN-IVPVIAKA 165 (301)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSC-EEEEECCG
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCC-EEEEEEeC
Confidence 32211111 2221 1344666676554 46666555444442 2456 88999999
Q ss_pred cCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeecccc
Q 020176 192 DLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 192 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~ 231 (330)
|+....++ ....+++.++++.++ ++++++||+++
T Consensus 166 Dl~~~~e~-~~~~~~~~~~~~~~~-----~~~~e~Sa~~~ 199 (301)
T 2qnr_A 166 DTLTLKER-ERLKKRILDEIEEHN-----IKIYHLPDAES 199 (301)
T ss_dssp GGSCHHHH-HHHHHHHHHHHHHTT-----CCCCCCC----
T ss_pred CCCCHHHH-HHHHHHHHHHHHHcC-----CeEEecCCccc
Confidence 99875443 334456777777765 57999999885
No 197
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.41 E-value=8.4e-13 Score=119.72 Aligned_cols=129 Identities=20% Similarity=0.181 Sum_probs=82.6
Q ss_pred eEEeEEEEeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCC-----------chhhHHHHHHHHH----c
Q 020176 115 TIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-----------MPQTKEHILLARQ----V 179 (330)
Q Consensus 115 t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~-----------~~~~~~~l~~~~~----~ 179 (330)
|+......+...+..+.+|||+|++.+...+..++..++++|+|+|.++.. ......++..+.. .
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~ 259 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT 259 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence 333334445566788999999999999999999999999999999998721 1222333333332 2
Q ss_pred CCCeEEEEEeeccCcChHH----------------HHHHHHHHHHHHHHhcCC--CCCCccEEEeeccccccCCccccch
Q 020176 180 GVPSLVCFLNKVDLVEDEE----------------LLELVEMELRELLSFYKF--PGDEIPIIRGSATSALQGKNEEIGK 241 (330)
Q Consensus 180 ~~p~iivviNK~D~~~~~~----------------~~~~~~~~~~~~~~~~~~--~~~~~pv~~~Sa~~~~~g~~~~~~~ 241 (330)
++| +|+|+||+|+....- ..+...+.+...+..+.. ....++++++||+++
T Consensus 260 ~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~---------- 328 (353)
T 1cip_A 260 DTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT---------- 328 (353)
T ss_dssp TSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH----------
T ss_pred CCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc----------
Confidence 566 999999999853210 012222222222223321 124578999999997
Q ss_pred hhHHHHHHHHhhh
Q 020176 242 KAILKLMDAVDEY 254 (330)
Q Consensus 242 ~~i~~ll~~l~~~ 254 (330)
.++.++++++...
T Consensus 329 ~nV~~vF~~v~~~ 341 (353)
T 1cip_A 329 KNVQFVFDAVTDV 341 (353)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 4677777776554
No 198
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1e-12 Score=119.63 Aligned_cols=114 Identities=18% Similarity=0.101 Sum_probs=79.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh--
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD-- 140 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~-- 140 (330)
....+|+|+|.||+|||||+|+|++ ..... ...+++|++.....+...+.++.|+||||..+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~------~~~~v----------~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a 133 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTG------TESEA----------AEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGA 133 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHS------BCCCG----------GGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhC------CCCcc----------cCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCc
Confidence 3446899999999999999999993 22111 12346777777777888899999999999532
Q ss_pred -----hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHc-----CCCeEEEEEeeccCc
Q 020176 141 -----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-----GVPSLVCFLNKVDLV 194 (330)
Q Consensus 141 -----~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~-----~~p~iivviNK~D~~ 194 (330)
.....+..++.+|++++|+|++++... .......+... ..| .++++||+|.-
T Consensus 134 ~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~-~~i~~nK~d~~ 195 (376)
T 4a9a_A 134 KDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTP-PDILIKKKEKG 195 (376)
T ss_dssp ----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCC-CCEEEEECSSS
T ss_pred hhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCC-hhhhhhHhhhh
Confidence 345567778899999999999864221 11122223332 345 55789999973
No 199
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.35 E-value=4e-12 Score=115.64 Aligned_cols=123 Identities=18% Similarity=0.182 Sum_probs=71.2
Q ss_pred EEeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCC-----------chhhHHHHHHHHH----cCCCeEE
Q 020176 121 VEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-----------MPQTKEHILLARQ----VGVPSLV 185 (330)
Q Consensus 121 ~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~-----------~~~~~~~l~~~~~----~~~p~ii 185 (330)
..+...+..+.+|||+|++.+...+..++..++++|+|+|.++-. ......++..+.. .++| +|
T Consensus 194 ~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p-iI 272 (362)
T 1zcb_A 194 YDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS-II 272 (362)
T ss_dssp EEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE-EE
T ss_pred EEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC-EE
Confidence 345556788999999999999999999999999999999998721 1222333333322 2466 89
Q ss_pred EEEeeccCcChH-----------------HHHHHHHHHHHHHHHhcCCC--CCCccEEEeeccccccCCccccchhhHHH
Q 020176 186 CFLNKVDLVEDE-----------------ELLELVEMELRELLSFYKFP--GDEIPIIRGSATSALQGKNEEIGKKAILK 246 (330)
Q Consensus 186 vviNK~D~~~~~-----------------~~~~~~~~~~~~~~~~~~~~--~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ 246 (330)
+++||+|+.... ...+...+.+...+..+.-. ...++++++||+++ .++.+
T Consensus 273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~----------~nV~~ 342 (362)
T 1zcb_A 273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT----------ENIRL 342 (362)
T ss_dssp EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH----------HHHHH
T ss_pred EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc----------hhHHH
Confidence 999999986321 00122222222222222111 23578899999996 45777
Q ss_pred HHHHHhhh
Q 020176 247 LMDAVDEY 254 (330)
Q Consensus 247 ll~~l~~~ 254 (330)
+++++...
T Consensus 343 vF~~v~~~ 350 (362)
T 1zcb_A 343 VFRDVKDT 350 (362)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666543
No 200
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.33 E-value=3.8e-12 Score=115.22 Aligned_cols=82 Identities=22% Similarity=0.170 Sum_probs=52.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC-----------------Ce
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-----------------KR 128 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-----------------~~ 128 (330)
.+|+++|.+|+|||||+|+|++........ +++|+......+... ..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~----------------p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANY----------------PFCTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC----------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCC----------------CCceECceEEEEecCCcccceeeeeecccceeee
Confidence 589999999999999999999632111110 112222111111111 24
Q ss_pred eEEEEeCCCchhhHH-------HHHHhhhccCeEEEEEeCCC
Q 020176 129 HYAHVDCPGHADYVK-------NMITGAAQMDGGILVVSAPD 163 (330)
Q Consensus 129 ~i~iiDtPG~~~~~~-------~~~~~~~~~d~~l~vvda~~ 163 (330)
.+.||||||+.++.. .....++.+|++++|+|+++
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 799999999876532 23455788999999999986
No 201
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.30 E-value=3.4e-11 Score=107.64 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=81.3
Q ss_pred eEEeEEEEeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCC-------CCC-c---hhhHHHHHHHHH----c
Q 020176 115 TIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAP-------DGP-M---PQTKEHILLARQ----V 179 (330)
Q Consensus 115 t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~-------~~~-~---~~~~~~l~~~~~----~ 179 (330)
|+......+...+..+.+|||+|++.+...+..+++.++++|+|+|.+ +.. . ......+..+.. .
T Consensus 154 TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~ 233 (327)
T 3ohm_A 154 TTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 233 (327)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC
Confidence 333444556667889999999999999999999999999999999875 211 1 122333333322 2
Q ss_pred CCCeEEEEEeeccCcChH-----------------HHHHHHHHHHHHHHHhcCC-CCCCccEEEeeccccccCCccccch
Q 020176 180 GVPSLVCFLNKVDLVEDE-----------------ELLELVEMELRELLSFYKF-PGDEIPIIRGSATSALQGKNEEIGK 241 (330)
Q Consensus 180 ~~p~iivviNK~D~~~~~-----------------~~~~~~~~~~~~~~~~~~~-~~~~~pv~~~Sa~~~~~g~~~~~~~ 241 (330)
++| +++++||+|+.... .-.+...+-+...+..... ....+.++.+||+..
T Consensus 234 ~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~---------- 302 (327)
T 3ohm_A 234 NSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT---------- 302 (327)
T ss_dssp TCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH----------
T ss_pred Cce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC----------
Confidence 466 88999999986421 0112222223333332221 124577889999986
Q ss_pred hhHHHHHHHHhhh
Q 020176 242 KAILKLMDAVDEY 254 (330)
Q Consensus 242 ~~i~~ll~~l~~~ 254 (330)
.++..+++.+...
T Consensus 303 ~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 303 ENIRFVFAAVKDT 315 (327)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4577777666553
No 202
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.28 E-value=5.5e-11 Score=106.69 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=58.3
Q ss_pred eEEeEEEEeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCC---------C--CchhhHHHHHHHHH----c
Q 020176 115 TIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD---------G--PMPQTKEHILLARQ----V 179 (330)
Q Consensus 115 t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~---------~--~~~~~~~~l~~~~~----~ 179 (330)
|+......+...+..+.+|||+|++.|...+..+++.++++|+|+|.++ . -.......+..+.. .
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~ 227 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK 227 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT
T ss_pred eeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC
Confidence 3334445566677899999999999999999999999999999999972 1 11222333333332 2
Q ss_pred CCCeEEEEEeeccCcC
Q 020176 180 GVPSLVCFLNKVDLVE 195 (330)
Q Consensus 180 ~~p~iivviNK~D~~~ 195 (330)
++| +++++||+|+..
T Consensus 228 ~~p-iiLv~NK~DL~~ 242 (340)
T 4fid_A 228 GAV-KLIFLNKMDLFE 242 (340)
T ss_dssp TSE-EEEEEECHHHHH
T ss_pred CCe-EEEEEECchhhh
Confidence 566 889999999865
No 203
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.27 E-value=2e-11 Score=115.28 Aligned_cols=131 Identities=17% Similarity=0.163 Sum_probs=78.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChh-------hhhcCceEEeEEE-------------E
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPE-------EKKRGITIATAHV-------------E 122 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~-------e~~~g~t~~~~~~-------------~ 122 (330)
.+..+|+++|++|+||||+++.|.......|........+...... ....++.+..... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999998777767655544332211111 1122333222100 0
Q ss_pred eeeCCeeEEEEeCCCch----hhHHHHHHh--hhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh
Q 020176 123 YETAKRHYAHVDCPGHA----DYVKNMITG--AAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 123 ~~~~~~~i~iiDtPG~~----~~~~~~~~~--~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~ 196 (330)
+...+..++||||||.. .+..+.... +..+|.+++|+|+..+.. .......+... +|-.++|+||+|....
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHAK 255 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCCC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCccccc
Confidence 11256789999999965 333333222 227899999999988643 23333333322 4522578999998753
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.26 E-value=1.7e-11 Score=111.55 Aligned_cols=84 Identities=21% Similarity=0.242 Sum_probs=53.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee-------------------eC
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-------------------TA 126 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-------------------~~ 126 (330)
++|+++|.+|+|||||+|+|++.........+. ..+. .... ..+. ..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~--------Ti~p--n~g~----~~v~~~~l~~~~~~~~~~~~~~~~~ 67 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFA--------TIDK--NVGV----VPLEDERLYALQRTFAKGERVPPVV 67 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGG--------GGST--TEEE----EECCCHHHHHHHHHHCBTTBCCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCc--------eecc--ceee----EecChHHHHHHHHHhcccccccccC
Confidence 468999999999999999999753211111100 0000 0100 0110 12
Q ss_pred CeeEEEEeCCCchhh-------HHHHHHhhhccCeEEEEEeCCC
Q 020176 127 KRHYAHVDCPGHADY-------VKNMITGAAQMDGGILVVSAPD 163 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~-------~~~~~~~~~~~d~~l~vvda~~ 163 (330)
...+.||||||+.++ .......++.+|++++|+|+.+
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 357999999997653 3455667889999999999986
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.23 E-value=3.2e-11 Score=102.48 Aligned_cols=167 Identities=14% Similarity=0.136 Sum_probs=87.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCC-hh--hhhcCceEEeEE----EE------------e
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA-PE--EKKRGITIATAH----VE------------Y 123 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~-~~--e~~~g~t~~~~~----~~------------~ 123 (330)
...++|+++|.+|+|||||+++|+.......+......+ .... .. ....+....... .. +
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD-VIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEE-TTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECC-CCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHH
Confidence 346799999999999999999999765443222221111 1100 00 000011100000 00 0
Q ss_pred eeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHH
Q 020176 124 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELV 203 (330)
Q Consensus 124 ~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~ 203 (330)
...+..+.++|++|..... ...-...+..+.++|+..+..... ......+.| .++|+||+|+.+..+ ..
T Consensus 115 ~~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~-~iiv~NK~Dl~~~~~---~~ 183 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE----KHPGIMKTA-DLIVINKIDLADAVG---AD 183 (226)
T ss_dssp CGGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT----TCHHHHTTC-SEEEEECGGGHHHHT---CC
T ss_pred hcCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh----hhhhHhhcC-CEEEEeccccCchhH---HH
Confidence 0112378899999942110 011123566778888644322111 011224678 668999999875311 01
Q ss_pred HHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 204 EMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
.+++.+.++.++ ...+++++||+++ .++.++++.+...
T Consensus 184 ~~~~~~~~~~~~---~~~~~~~~Sa~~g----------~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 184 IKKMENDAKRIN---PDAEVVLLSLKTM----------EGFDKVLEFIEKS 221 (226)
T ss_dssp HHHHHHHHHHHC---TTSEEEECCTTTC----------TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCeEEEEEecCC----------CCHHHHHHHHHHH
Confidence 123344444432 2378999999997 4688888777654
No 206
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.19 E-value=1.3e-10 Score=105.22 Aligned_cols=69 Identities=22% Similarity=0.260 Sum_probs=49.3
Q ss_pred CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCC-------CC----chhhHHHHHHHHH----cCCCeEEEEEee
Q 020176 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD-------GP----MPQTKEHILLARQ----VGVPSLVCFLNK 190 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~-------~~----~~~~~~~l~~~~~----~~~p~iivviNK 190 (330)
....+.+|||+|+++|...+..+++.++++|+|+|.++ .. ......++..+.. .++| +++|+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE-EEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe-EEEEEEC
Confidence 34679999999999999999999999999999999871 11 1222333333332 2466 8999999
Q ss_pred ccCcC
Q 020176 191 VDLVE 195 (330)
Q Consensus 191 ~D~~~ 195 (330)
+|+..
T Consensus 260 ~DL~~ 264 (354)
T 2xtz_A 260 FDIFE 264 (354)
T ss_dssp HHHHH
T ss_pred cchhh
Confidence 99853
No 207
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=99.18 E-value=2.1e-11 Score=102.03 Aligned_cols=64 Identities=25% Similarity=0.358 Sum_probs=56.0
Q ss_pred CCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 261 QLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 261 ~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
+.++||+|+|+++|+ +.|+|+.|+|.+|.|++||+|.+.|.+. .++|++|++|++++++|.||+
T Consensus 2 ~~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~----~~~V~~I~~~~~~~~~A~aGd 65 (204)
T 3e1y_E 2 PLGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKH----NVEVLGILSDDVETDTVAPGE 65 (204)
T ss_dssp -----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTE----EEEEEEECSSSSCBSEECTTS
T ss_pred CCCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCC----EEEEEEEEECCEEeEEECCCC
Confidence 357899999999998 7999999999999999999999998764 799999999999999999996
No 208
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.15 E-value=2.4e-10 Score=105.35 Aligned_cols=136 Identities=13% Similarity=0.194 Sum_probs=75.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCC--eeEEEEeCCCchhh-
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHADY- 141 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~~- 141 (330)
.++++|+|++|+|||||+|.|++.... |... .....+.+.....+.+.... ..++++|+||....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~-g~~~-----------~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~ 109 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFE-GEPA-----------THTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQI 109 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-C
T ss_pred eeEEEEECCCCCCHHHHHHHHhCcccc-CCcC-----------CCCCccceEeeEEEEeecCccccccchhhhhhhhhcc
Confidence 357999999999999999999853110 0000 00011222222222222211 36899999995431
Q ss_pred ------------HH-HH----HHh--hh-------c--cCe-EEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeecc
Q 020176 142 ------------VK-NM----ITG--AA-------Q--MDG-GILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (330)
Q Consensus 142 ------------~~-~~----~~~--~~-------~--~d~-~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D 192 (330)
+. .+ ... +. . .|+ +++++|+..++...+.+.+..+. .++| +|+|+||+|
T Consensus 110 ~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~-vI~Vi~KtD 187 (427)
T 2qag_B 110 NKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVN-IIPIIAKAD 187 (427)
T ss_dssp CHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSE-EEEEESCGG
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCC-EEEEEcchh
Confidence 11 11 111 11 1 233 56677887788777777777665 5566 999999999
Q ss_pred CcChHHHHHHHHHHHHHHHHhcC
Q 020176 193 LVEDEELLELVEMELRELLSFYK 215 (330)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~ 215 (330)
...+.+. ..+.+.+++.++..|
T Consensus 188 ~Lt~~E~-~~l~~~I~~~L~~~g 209 (427)
T 2qag_B 188 AISKSEL-TKFKIKITSELVSNG 209 (427)
T ss_dssp GSCHHHH-HHHHHHHHHHHBTTB
T ss_pred ccchHHH-HHHHHHHHHHHHHcC
Confidence 9986554 444445665454444
No 209
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.14 E-value=3.7e-10 Score=98.71 Aligned_cols=143 Identities=19% Similarity=0.251 Sum_probs=82.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhc-CccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh---
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEE-GKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--- 140 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~-g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--- 140 (330)
.++++++|++|+|||||+|.|++..... |...... .... .....+++.... ....-...++++|+||...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g-~~i~--~~~~~~~i~~v~---q~~~~~~~ltv~d~~~~g~~~~ 75 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNRE-EKIP--KTVEIKAIGHVI---EEGGVKMKLTVIDTPGFGDQIN 75 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC-------------CC--CCCSCCEEEESC---C----CCEEEEECCCC--CCSB
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCC-cccC--cceeeeeeEEEe---ecCCCcCCceEEechhhhhhcc
Confidence 3689999999999999999999754322 2111100 0000 000000111000 0011123689999999432
Q ss_pred ----------hHH-----HHHHh----------hhccCeEEEEEeCC-CCCchhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 141 ----------YVK-----NMITG----------AAQMDGGILVVSAP-DGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 141 ----------~~~-----~~~~~----------~~~~d~~l~vvda~-~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
+.. ..... +..++++++++|.. .+..+.+.+.+..+... ++ +|+|+||+|..
T Consensus 76 ~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~-vI~Vi~K~D~l 153 (270)
T 3sop_A 76 NENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VN-IIPVIAKADTM 153 (270)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SE-EEEEETTGGGS
T ss_pred cHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-Cc-EEEEEeccccC
Confidence 111 11111 12358889999965 68888888888887766 66 88999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCC
Q 020176 195 EDEELLELVEMELRELLSFYKF 216 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~ 216 (330)
..++. +...+.+++.++..++
T Consensus 154 t~~e~-~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 154 TLEEK-SEFKQRVRKELEVNGI 174 (270)
T ss_dssp CHHHH-HHHHHHHHHHHHHTTC
T ss_pred CHHHH-HHHHHHHHHHHHHcCc
Confidence 86554 4455677777777764
No 210
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.04 E-value=7.7e-09 Score=95.32 Aligned_cols=167 Identities=20% Similarity=0.116 Sum_probs=92.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHh-cCccceeeccccCCChhhhhcCceEEeEEEEeeeC-CeeEEEEeCCCchh--
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAE-EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHAD-- 140 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~-- 140 (330)
...++|+|++|+|||||+|.|++.... .|... .+..+.. ..+. .+... ...++++|+||...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~------~~g~~~t-~~~~-------v~q~~~~~~ltv~D~~g~~~~~ 134 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAK------TGVVEVT-MERH-------PYKHPNIPNVVFWDLPGIGSTN 134 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCC------CCC-----CCCE-------EEECSSCTTEEEEECCCGGGSS
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEE------ECCeecc-eeEE-------eccccccCCeeehHhhcccchH
Confidence 348999999999999999999953221 12111 0111100 0111 11111 23689999999542
Q ss_pred -hHHHHHH--hhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHH--------HHHHHHHHHHH
Q 020176 141 -YVKNMIT--GAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEE--------LLELVEMELRE 209 (330)
Q Consensus 141 -~~~~~~~--~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~--------~~~~~~~~~~~ 209 (330)
....... .+...+..++ ++... .+.+.......+...+.| +++|+||.|+.--+| ..+.+.+.+++
T Consensus 135 ~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p-~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~ 211 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKE-FYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRL 211 (413)
T ss_dssp CCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCE-EEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCC-eEEEEecCcccccCcccccCCHHHHHHHHHHHHH
Confidence 1222222 2333455544 77643 456666666777777888 889999999751000 01223333344
Q ss_pred HH----HhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCCCC
Q 020176 210 LL----SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (330)
Q Consensus 210 ~~----~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~~~ 258 (330)
+. +..|. ....+|++|+..- ++ .++++|.+.+...+|..
T Consensus 212 l~~~~l~~~g~--~~~~iiliSsh~l-~~-------~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 212 NCVNTFRENGI--AEPPIFLLSNKNV-CH-------YDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHTTC--SSCCEEECCTTCT-TS-------TTHHHHHHHHHHHSCGG
T ss_pred HHHHHHHhcCC--CCCcEEEEecCcC-Cc-------cCHHHHHHHHHHhCccc
Confidence 32 33332 2246899998431 11 35888888888888743
No 211
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.99 E-value=2.1e-11 Score=111.49 Aligned_cols=117 Identities=14% Similarity=0.146 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh----
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY---- 141 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~---- 141 (330)
.+|+++|.+|+|||||+|+|++....... .... ...+|+|.......+. ..+.++||||..+.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~-~~~~---------~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~ 229 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGN-VITT---------SYFPGTTLDMIEIPLE---SGATLYDTPGIINHHQMA 229 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTC-CCEE---------EECTTSSCEEEEEECS---TTCEEEECCSCCCCSSGG
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCcc-ceee---------cCCCCeEEeeEEEEeC---CCeEEEeCCCcCcHHHHH
Confidence 57999999999999999999975322111 1111 1223666665554443 24899999994321
Q ss_pred ---HHHHHHhh---hccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh
Q 020176 142 ---VKNMITGA---AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 142 ---~~~~~~~~---~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~ 196 (330)
.......+ ...|.+++++++.+.........+..+...+.| +++++||+|....
T Consensus 230 ~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~-~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 230 HFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRS-FVCYMANELTVHR 289 (369)
T ss_dssp GGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTTSCEEE
T ss_pred HHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCce-EEEEecCCccccc
Confidence 11112222 568999999999542111111112233334567 8899999999864
No 212
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.97 E-value=7.5e-11 Score=107.74 Aligned_cols=119 Identities=12% Similarity=0.156 Sum_probs=68.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchhh----
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY---- 141 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~---- 141 (330)
.+|+++|.+|+|||||+|+|++.......... .....+|+|.......+.. .+.++||||..+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~---------~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~ 228 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVI---------TTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMA 228 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCC---------EEECCC----CEEEEESSS---SCEEEECCCBCCTTSGG
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccce---------ecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHH
Confidence 57999999999999999999965321100011 1112235666555444332 3899999995321
Q ss_pred ---HHHHHHh---hhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChH
Q 020176 142 ---VKNMITG---AAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE 197 (330)
Q Consensus 142 ---~~~~~~~---~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~ 197 (330)
..+.... ....+.+++++++...........+..+...+.| +++++||+|.....
T Consensus 229 ~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~-~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 229 HYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRA-FTCHFSNRLTIHRT 289 (368)
T ss_dssp GGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTTSCEEEE
T ss_pred HHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCce-EEEEecCccccccc
Confidence 1122222 3467889999998532111111112223334667 88999999998754
No 213
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.95 E-value=2.7e-08 Score=92.12 Aligned_cols=150 Identities=15% Similarity=0.132 Sum_probs=86.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh-------hhhhcCceEEeEEE-------------Ee
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-------EEKKRGITIATAHV-------------EY 123 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~-------~e~~~g~t~~~~~~-------------~~ 123 (330)
+...|+++|.+|+||||++..|.......|........+..... .....+..+..... .+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999887777765544332222111 11122332221100 01
Q ss_pred eeCCeeEEEEeCCCch----hhHHHHH--HhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChH
Q 020176 124 ETAKRHYAHVDCPGHA----DYVKNMI--TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE 197 (330)
Q Consensus 124 ~~~~~~i~iiDtPG~~----~~~~~~~--~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~ 197 (330)
...+..++||||||.. ....+.. .....+|.+++|+|+..+. ........+.. ..+...+|+||+|.....
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~-~~~i~gVIlTKlD~~~~g 255 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKE-ATPIGSIIVTKLDGSAKG 255 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHH-SCTTEEEEEECCSSCSSH
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHh-hCCCeEEEEECCCCcccc
Confidence 1234789999999932 2333332 2233589999999998742 22223333332 233345789999998643
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccEEEeec
Q 020176 198 ELLELVEMELRELLSFYKFPGDEIPIIRGSA 228 (330)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa 228 (330)
.. +..+....+ .|+.+++.
T Consensus 256 G~-------~ls~~~~~g-----~PI~fig~ 274 (443)
T 3dm5_A 256 GG-------ALSAVAATG-----APIKFIGT 274 (443)
T ss_dssp HH-------HHHHHHTTC-----CCEEEEEC
T ss_pred cH-------HHHHHHHHC-----CCEEEEEc
Confidence 21 122233333 68887775
No 214
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.91 E-value=1.6e-09 Score=99.07 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=48.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeC----------------
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA---------------- 126 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~---------------- 126 (330)
....+|+++|.+|+|||||+|+|++....... .+++|+......+...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~----------------~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~ 83 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAEN----------------FPFCTIDPNESRVPVPDERFDFLCQYHKPASK 83 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHHCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccC----------------CCccccCceeEEEEECCccceeeccccCcccc
Confidence 34468999999999999999999954221110 1122222211111111
Q ss_pred -CeeEEEEeCCCchhhHH-------HHHHhhhccCeEEEEEeCCC
Q 020176 127 -KRHYAHVDCPGHADYVK-------NMITGAAQMDGGILVVSAPD 163 (330)
Q Consensus 127 -~~~i~iiDtPG~~~~~~-------~~~~~~~~~d~~l~vvda~~ 163 (330)
...+.||||||+.++.. .....++.+|++++|+|+.+
T Consensus 84 ~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 84 IPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 34589999999877543 45677889999999999874
No 215
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.84 E-value=6.9e-08 Score=89.41 Aligned_cols=130 Identities=17% Similarity=0.165 Sum_probs=75.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh-------hhhhcCceEEeEEE-------------Ee
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-------EEKKRGITIATAHV-------------EY 123 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~-------~e~~~g~t~~~~~~-------------~~ 123 (330)
+...|+++|++|+||||++..|.......|........+..... .....|........ ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35678999999999999999999877777665444322211111 01111332211100 01
Q ss_pred eeCCeeEEEEeCCCchh------hHHHHHHhh--hccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 124 ETAKRHYAHVDCPGHAD------YVKNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 124 ~~~~~~i~iiDtPG~~~------~~~~~~~~~--~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
...+..+.|+||||... +..++.... ..+|.+++|+|+..+. ........+...-.+ ..+|+||+|...
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq--~a~~~a~~f~~~~~~-~gVIlTKlD~~a 252 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ--KAYDLASRFHQASPI-GSVIITKMDGTA 252 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GGHHHHHHHHHHCSS-EEEEEECGGGCS
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch--HHHHHHHHHhcccCC-cEEEEecccccc
Confidence 12357899999999533 344433322 2569999999998752 223333333322233 457899999875
Q ss_pred h
Q 020176 196 D 196 (330)
Q Consensus 196 ~ 196 (330)
.
T Consensus 253 ~ 253 (433)
T 3kl4_A 253 K 253 (433)
T ss_dssp C
T ss_pred c
Confidence 3
No 216
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.84 E-value=4.7e-09 Score=93.24 Aligned_cols=92 Identities=24% Similarity=0.246 Sum_probs=67.1
Q ss_pred eEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCC-c-hhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHH
Q 020176 129 HYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-M-PQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEME 206 (330)
Q Consensus 129 ~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~-~-~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~ 206 (330)
.+.+||| +++|...+..+++.+|++|+|+|+++.. . .....++..+...++| +++|+||+|+.+..+. ++
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~p-iilv~NK~DL~~~~~v-----~~ 135 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELE-TVMVINKMDLYDEDDL-----RK 135 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHHHH-----HH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEeHHHcCCchhH-----HH
Confidence 7899999 8887777778889999999999998754 2 2334455555666788 7899999999875321 23
Q ss_pred HHHHHHhcCCCCCCccEEEeecccc
Q 020176 207 LRELLSFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 207 ~~~~~~~~~~~~~~~pv~~~Sa~~~ 231 (330)
..++++.+.. . .+++++||+++
T Consensus 136 ~~~~~~~~~~--~-~~~~~~SAktg 157 (301)
T 1u0l_A 136 VRELEEIYSG--L-YPIVKTSAKTG 157 (301)
T ss_dssp HHHHHHHHTT--T-SCEEECCTTTC
T ss_pred HHHHHHHHhh--h-CcEEEEECCCC
Confidence 4445555432 1 67999999997
No 217
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.81 E-value=3e-08 Score=92.17 Aligned_cols=129 Identities=18% Similarity=0.171 Sum_probs=72.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCC------Chh-hhhcCceEEeEE--------E---Ee-ee
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDK------APE-EKKRGITIATAH--------V---EY-ET 125 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~------~~~-e~~~g~t~~~~~--------~---~~-~~ 125 (330)
...|+++|.+|+||||+++.|.......|........+... ... ....+..+.... . .+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998776666544333211100 000 001111111100 0 00 01
Q ss_pred CCeeEEEEeCCCchh----hHHHHHHh--hhccCeEEEEEeCCCCCchhhHHHHHHHHHcCC-CeEEEEEeeccCcCh
Q 020176 126 AKRHYAHVDCPGHAD----YVKNMITG--AAQMDGGILVVSAPDGPMPQTKEHILLARQVGV-PSLVCFLNKVDLVED 196 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~----~~~~~~~~--~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~-p~iivviNK~D~~~~ 196 (330)
.+..++||||||... +...+... +..+|.+++|+|+..+. ......... ...+ +...+|+||+|....
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~-~~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAF-KEAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHH-HTTSCSCEEEEEECSSSCST
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHH-hhcccCCeEEEEeCCCCccc
Confidence 456899999999544 33333222 22689999999997753 222222222 2235 546688999998753
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.78 E-value=1.1e-07 Score=83.96 Aligned_cols=148 Identities=14% Similarity=0.099 Sum_probs=84.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChh-------hhhcCceEEeEEE-------------Eee
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPE-------EKKRGITIATAHV-------------EYE 124 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~-------e~~~g~t~~~~~~-------------~~~ 124 (330)
...|+++|.+|+||||++..|.......|........+...... ....++.+..... .+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999998777666544333222111110 1112332211100 011
Q ss_pred eCCeeEEEEeCCCchh--hHHHHH------HhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh
Q 020176 125 TAKRHYAHVDCPGHAD--YVKNMI------TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 125 ~~~~~i~iiDtPG~~~--~~~~~~------~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~ 196 (330)
..+..++||||||... ...... ..+..+|.+++|+|+..+ ....+.+..+.. .++...+|+||+|....
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~~ 254 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTAK 254 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCTT
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCcc
Confidence 1467899999999655 221111 234478999999999754 233333333332 45545578999998753
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccEEEee
Q 020176 197 EELLELVEMELRELLSFYKFPGDEIPIIRGS 227 (330)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~S 227 (330)
.. .+..+...++ .|+.+++
T Consensus 255 ~g-------~~~~~~~~~~-----~pi~~i~ 273 (297)
T 1j8m_F 255 GG-------GALSAVAATG-----ATIKFIG 273 (297)
T ss_dssp HH-------HHHHHHHTTT-----CCEEEEE
T ss_pred hH-------HHHHHHHHHC-----cCEEEEe
Confidence 21 1223444444 6787766
No 219
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.72 E-value=6.7e-08 Score=88.63 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=55.7
Q ss_pred EEEeeeCCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCC----------CCc-hhhHHHHHHHHH----cCCCeE
Q 020176 120 HVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD----------GPM-PQTKEHILLARQ----VGVPSL 184 (330)
Q Consensus 120 ~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~----------~~~-~~~~~~l~~~~~----~~~p~i 184 (330)
...+...+..+.||||+|++.|...+..+++.++++|+|+|.++ .-. .....++..+.. .++| +
T Consensus 209 ~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~p-i 287 (402)
T 1azs_C 209 ETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS-V 287 (402)
T ss_dssp EEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCC-E
T ss_pred EEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCe-E
Confidence 33455567889999999999999999999999999999999986 111 222333433332 2467 8
Q ss_pred EEEEeeccCcC
Q 020176 185 VCFLNKVDLVE 195 (330)
Q Consensus 185 ivviNK~D~~~ 195 (330)
++|+||+|+..
T Consensus 288 iLvgNK~DL~~ 298 (402)
T 1azs_C 288 ILFLNKQDLLA 298 (402)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEEChhhhh
Confidence 89999999854
No 220
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.62 E-value=4.6e-08 Score=89.53 Aligned_cols=85 Identities=21% Similarity=0.223 Sum_probs=54.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHH-hcCccceeeccccCCChhhhhcCceEEeEEEEeeeC---------------
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLA-EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA--------------- 126 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~--------------- 126 (330)
....+|+++|++|+|||||+|+|++... .... .+++|+......+...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~----------------~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~ 81 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPAN----------------YPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTC----------------CSSCCCCTTEEEEEECCHHHHHHHHHHCCSE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccC----------------CCceeecceeeeeeeCCcchhhhhhhccccc
Confidence 3456899999999999999999995321 1110 1122222222212222
Q ss_pred --CeeEEEEeCCCchh-------hHHHHHHhhhccCeEEEEEeCCC
Q 020176 127 --KRHYAHVDCPGHAD-------YVKNMITGAAQMDGGILVVSAPD 163 (330)
Q Consensus 127 --~~~i~iiDtPG~~~-------~~~~~~~~~~~~d~~l~vvda~~ 163 (330)
+..+.++|+||... +.......++.+|.+++|+|+.+
T Consensus 82 ~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 82 RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 24689999999432 34456667789999999999865
No 221
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.58 E-value=2.6e-07 Score=85.82 Aligned_cols=128 Identities=18% Similarity=0.148 Sum_probs=73.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhc-CccceeeccccCCCh-h------hhhcCceEEeEE-------------EE
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEE-GKAKAIAFDEIDKAP-E------EKKRGITIATAH-------------VE 122 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~-g~~~~~~~~~~~~~~-~------e~~~g~t~~~~~-------------~~ 122 (330)
+...|+++|..|+||||++..|....... |+.......+..... . ....+..+.... ..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45688999999999999999999887776 665544322221111 0 111232221110 00
Q ss_pred eeeCCeeEEEEeCCCchhh----HHHHH--HhhhccCeEEEEEeCCCCCchhhHHHHHHHH-HcCCCeEEEEEeeccCcC
Q 020176 123 YETAKRHYAHVDCPGHADY----VKNMI--TGAAQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 123 ~~~~~~~i~iiDtPG~~~~----~~~~~--~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~-~~~~p~iivviNK~D~~~ 195 (330)
+...+..++||||||...+ ...+. ..+..+|.+++|+|+..+. ........+. ..++. -+|+||+|...
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~~~l~i~--gvVlnK~D~~~ 254 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFNEALPLT--GVVLTKVDGDA 254 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHHHHSCCC--CEEEECTTSSS
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHhccCCCe--EEEEecCCCCc
Confidence 1124678999999995443 22211 2234689999999998652 2222222222 23333 35799999864
No 222
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=98.52 E-value=1.1e-06 Score=64.88 Aligned_cols=62 Identities=23% Similarity=0.187 Sum_probs=52.4
Q ss_pred CCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 262 LDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 262 ~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
...|..+.|..++..=+ |+++.|+|.+|+|++|+.| |.+. ...+|+|||++++++++|.+|+
T Consensus 31 ~~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~---~vg~VkSIE~~~e~v~eA~~Gd 92 (116)
T 1xe1_A 31 KKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPS---GIGGIVRIERNREKVEFAIAGD 92 (116)
T ss_dssp SSCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSS---CEEEEEEEEETTEEESEEETTC
T ss_pred ecCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCc---eEEEEEEEEECCcCcCCcCCCC
Confidence 45788888888555555 8999999999999999999 5441 3699999999999999999995
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.52 E-value=3.5e-07 Score=80.30 Aligned_cols=87 Identities=15% Similarity=0.068 Sum_probs=56.3
Q ss_pred EEeCCCch-hhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHH
Q 020176 132 HVDCPGHA-DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELREL 210 (330)
Q Consensus 132 iiDtPG~~-~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~ 210 (330)
|-+.|||. +..+++...+..+|+++.|+|+..+........-..+ .++| .++|+||+|+.+.+. . +...++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp-~ilVlNK~DL~~~~~----~-~~~~~~ 74 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKP-RIMLLNKADKADAAV----T-QQWKEH 74 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSC-EEEEEECGGGSCHHH----H-HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCC-EEEEEECcccCCHHH----H-HHHHHH
Confidence 44679987 5677888899999999999999986655432222222 4567 778999999997432 1 233444
Q ss_pred HHhcCCCCCCccEEEeecccc
Q 020176 211 LSFYKFPGDEIPIIRGSATSA 231 (330)
Q Consensus 211 ~~~~~~~~~~~pv~~~Sa~~~ 231 (330)
++..+ ++++++||+++
T Consensus 75 ~~~~g-----~~~i~iSA~~~ 90 (282)
T 1puj_A 75 FENQG-----IRSLSINSVNG 90 (282)
T ss_dssp HHTTT-----CCEEECCTTTC
T ss_pred HHhcC-----CcEEEEECCCc
Confidence 44433 57999999874
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.45 E-value=1.1e-07 Score=91.33 Aligned_cols=102 Identities=18% Similarity=0.117 Sum_probs=56.7
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEE--Ee-eeCCeeEEEEeCCCc
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHV--EY-ETAKRHYAHVDCPGH 138 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~--~~-~~~~~~i~iiDtPG~ 138 (330)
..+..+|+|+|.+|+|||||+|+|++ ..... .... .. ++.|.....+ .+ ...+..+.|+||||.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g------~~~~~--~~~~-tt----~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi 101 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAG------KKKGF--SLGS-TV----QSHTKGIWMWCVPHPKKPGHILVLLDTEGL 101 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTT------CSSCS--CCCC-SS----SCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcC------CCCcc--ccCC-CC----CCceeEEEEeecccccCCCceEEEecCCCc
Confidence 45667899999999999999999984 22111 0000 00 1122211111 11 124578999999995
Q ss_pred hhhHH------HHHHhhhccCeEEEEEeCCCCCchhhHHHHHHH
Q 020176 139 ADYVK------NMITGAAQMDGGILVVSAPDGPMPQTKEHILLA 176 (330)
Q Consensus 139 ~~~~~------~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~ 176 (330)
.+... ....++...-..++|+|+..++..+....+..+
T Consensus 102 ~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v 145 (592)
T 1f5n_A 102 GDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYV 145 (592)
T ss_dssp CCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHH
T ss_pred CcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHH
Confidence 43211 111112221122678888888877776665543
No 225
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.44 E-value=3.9e-07 Score=83.14 Aligned_cols=108 Identities=15% Similarity=0.073 Sum_probs=65.1
Q ss_pred EEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHH
Q 020176 130 YAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRE 209 (330)
Q Consensus 130 i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~ 209 (330)
+.-+++| +++|.+........++++++|+|+.+.......+....+ .+.| +++|+||+|+.+.+...+.+.+.+.+
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~p-iilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNP-ILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSC-EEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCC-EEEEEEChhcCCCccCHHHHHHHHHH
Confidence 3444554 678888777777889999999999875432222222221 2567 88899999998753222334445556
Q ss_pred HHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 210 LLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 210 ~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
.++..|+. ..+++++||+++ .++.+|++.+.+
T Consensus 127 ~~~~~g~~--~~~v~~iSA~~g----------~gi~~L~~~I~~ 158 (369)
T 3ec1_A 127 MAEELGLC--PVDVCLVSAAKG----------IGMAKVMEAINR 158 (369)
T ss_dssp HHHTTTCC--CSEEEECBTTTT----------BTHHHHHHHHHH
T ss_pred HHHHcCCC--cccEEEEECCCC----------CCHHHHHHHHHh
Confidence 66766652 236899999986 345555555544
No 226
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.42 E-value=5.2e-06 Score=74.25 Aligned_cols=148 Identities=18% Similarity=0.146 Sum_probs=81.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCC-Chh------hhhcCceEEeEEEEe-------------
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDK-APE------EKKRGITIATAHVEY------------- 123 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~-~~~------e~~~g~t~~~~~~~~------------- 123 (330)
+.-.|+++|++|+|||||++.|.+.....+........+... ... -...|+.........
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 345789999999999999999998766655433332222111 111 112233221110000
Q ss_pred eeCCeeEEEEeCCCchh----hHHHHHHh--hhccCeEEEEEeCCCCCchhhHHHHHHHH-HcCCCeEEEEEeeccCcCh
Q 020176 124 ETAKRHYAHVDCPGHAD----YVKNMITG--AAQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 124 ~~~~~~i~iiDtPG~~~----~~~~~~~~--~~~~d~~l~vvda~~~~~~~~~~~l~~~~-~~~~p~iivviNK~D~~~~ 196 (330)
...+..+.++||+|... +..+.... .-.+|-.++++|+..+. +..+.+..+. ..++. . +++||+|....
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it-~-iilTKlD~~a~ 283 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKID-G-IILTKLDADAR 283 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCC-E-EEEECGGGCSC
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCC-E-EEEeCcCCccc
Confidence 01245678899999532 33333221 22578999999987652 3333333333 45665 4 67999997543
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccEEEee
Q 020176 197 EELLELVEMELRELLSFYKFPGDEIPIIRGS 227 (330)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~S 227 (330)
-. .+-.+....+ .|+.+++
T Consensus 284 ~G-------~~l~~~~~~~-----~pi~~i~ 302 (328)
T 3e70_C 284 GG-------AALSISYVID-----APILFVG 302 (328)
T ss_dssp CH-------HHHHHHHHHT-----CCEEEEE
T ss_pred hh-------HHHHHHHHHC-----CCEEEEe
Confidence 21 1122334444 6788777
No 227
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.40 E-value=1.3e-06 Score=77.54 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=54.0
Q ss_pred HhhhccCeEEEEEeCCCCC-chh-hHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEE
Q 020176 147 TGAAQMDGGILVVSAPDGP-MPQ-TKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPII 224 (330)
Q Consensus 147 ~~~~~~d~~l~vvda~~~~-~~~-~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 224 (330)
.+++++|.+++|+|++++. ... ..+++..+...++| +++|+||+|+.++.+. +. .+++.++++..+ ++++
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~~~v-~~-~~~~~~~~~~~g-----~~~~ 146 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVE-PVIVFNKIDLLNEEEK-KE-LERWISIYRDAG-----YDVL 146 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHHHH-HH-HHHHHHHHHHTT-----CEEE
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCC-EEEEEEcccCCCcccc-HH-HHHHHHHHHHCC-----CeEE
Confidence 4688999999999998753 333 34556666677888 7789999999875321 11 224455555554 5799
Q ss_pred Eeecccc
Q 020176 225 RGSATSA 231 (330)
Q Consensus 225 ~~Sa~~~ 231 (330)
++||+++
T Consensus 147 ~~SA~~g 153 (302)
T 2yv5_A 147 KVSAKTG 153 (302)
T ss_dssp ECCTTTC
T ss_pred EEECCCC
Confidence 9999986
No 228
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.40 E-value=1.3e-06 Score=81.69 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=69.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCC------h-hhhhcCceEEeEEEE-------------ee
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA------P-EEKKRGITIATAHVE-------------YE 124 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~------~-~e~~~g~t~~~~~~~-------------~~ 124 (330)
.-.|+|+|..|+|||||++.|.+.....+............. . .....++.+-..... ..
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK 372 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHH
Confidence 347899999999999999999987665443332221111111 0 001223332211100 01
Q ss_pred eCCeeEEEEeCCCchh----hHHHH---HHhhh-----ccCeEEEEEeCCCCCchhhHHHHHHHH-HcCCCeEEEEEeec
Q 020176 125 TAKRHYAHVDCPGHAD----YVKNM---ITGAA-----QMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKV 191 (330)
Q Consensus 125 ~~~~~i~iiDtPG~~~----~~~~~---~~~~~-----~~d~~l~vvda~~~~~~~~~~~l~~~~-~~~~p~iivviNK~ 191 (330)
..+..+.|+||+|... ++.+. ...++ ..+-++||+|+..+. .....+..+. ..++. . +++||+
T Consensus 373 ~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~~it-g-vIlTKL 448 (503)
T 2yhs_A 373 ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAVGLT-G-ITLTKL 448 (503)
T ss_dssp HTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHTCCS-E-EEEECG
T ss_pred hcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhcCCC-E-EEEEcC
Confidence 2456789999999532 22221 11111 256789999997652 2222333333 45666 4 579999
Q ss_pred cCcC
Q 020176 192 DLVE 195 (330)
Q Consensus 192 D~~~ 195 (330)
|-..
T Consensus 449 D~ta 452 (503)
T 2yhs_A 449 DGTA 452 (503)
T ss_dssp GGCS
T ss_pred CCcc
Confidence 9754
No 229
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.38 E-value=2.7e-07 Score=80.99 Aligned_cols=59 Identities=27% Similarity=0.345 Sum_probs=35.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCch
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (330)
...++|+++|.+|+|||||+|+|++ .....+ ...+|+|.......+ +..+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~------~~~~~~---------~~~~g~T~~~~~~~~---~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAK------KNIAKT---------GDRPGITTSQQWVKV---GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT------SCCC---------------------CCEEE---TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhc------Cceeec---------CCCCCeeeeeEEEEe---CCCEEEEECcCcC
Confidence 4567999999999999999999983 222211 112355554433222 3478999999953
No 230
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.35 E-value=7.5e-07 Score=81.20 Aligned_cols=100 Identities=15% Similarity=0.051 Sum_probs=64.5
Q ss_pred CchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHH--cCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ--VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~--~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
..++|.+......+.+|++++|+|+.+.. ..+...+.. .++| +++|+||+|+.+.....+.+.+.+...++..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~----~~~~~~l~~~~~~~p-~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN----GSWLPGLHRFVGNNK-VLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH----HHCCTTHHHHSSSSC-EEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc----ccHHHHHHHHhCCCc-EEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 35778887777778889999999998631 111112222 2667 8899999999864322233444555566666
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhh
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~ 253 (330)
|+. ..+++++||+++ .++.+|++.+.+
T Consensus 130 g~~--~~~v~~iSA~~g----------~gi~~L~~~l~~ 156 (368)
T 3h2y_A 130 GLK--PEDVFLISAAKG----------QGIAELADAIEY 156 (368)
T ss_dssp TCC--CSEEEECCTTTC----------TTHHHHHHHHHH
T ss_pred CCC--cccEEEEeCCCC----------cCHHHHHhhhhh
Confidence 652 236999999986 346666666544
No 231
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.35 E-value=4.2e-06 Score=69.40 Aligned_cols=125 Identities=14% Similarity=0.059 Sum_probs=76.8
Q ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEee-----------eCCeeEEEEe
Q 020176 67 NVGTI-GHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-----------TAKRHYAHVD 134 (330)
Q Consensus 67 ~I~v~-G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-----------~~~~~i~iiD 134 (330)
.|+|. +..|+||||+.-.|.......|+.......+.......-.............. ...+.++|+|
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD 82 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVD 82 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEE
Confidence 46676 67889999999999888777776544332111111100000000001111110 1347899999
Q ss_pred CCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcC-----CCeEEEEEeeccCcC
Q 020176 135 CPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG-----VPSLVCFLNKVDLVE 195 (330)
Q Consensus 135 tPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~-----~p~iivviNK~D~~~ 195 (330)
||+... ......+..+|.+++++..+... ......+..+...+ ++ +.+|+|++|...
T Consensus 83 ~~~~~~--~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~~~~ 144 (206)
T 4dzz_A 83 GAGSLS--VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVE-ARFLITRKIEMA 144 (206)
T ss_dssp CCSSSS--HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCE-EEEEECSBCTTE
T ss_pred CCCCCC--HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCc-EEEEEeccCCCc
Confidence 998653 34455667799999999998766 67777777776553 45 578999999543
No 232
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.35 E-value=3.2e-06 Score=74.90 Aligned_cols=148 Identities=20% Similarity=0.196 Sum_probs=78.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh-------hhhhcCceEEeEE-------E------Eee
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-------EEKKRGITIATAH-------V------EYE 124 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~-------~e~~~g~t~~~~~-------~------~~~ 124 (330)
...|+++|++|+||||++..|.......|........+..... .-...+....... . ...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~ 183 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHAL 183 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHH
Confidence 3578999999999999999999877665543332221111100 0011232221100 0 001
Q ss_pred eCCeeEEEEeCCCchhhHH-------HHHHhh-----hccCeEEEEEeCCCCCchhhHHHHHH-HHHcCCCeEEEEEeec
Q 020176 125 TAKRHYAHVDCPGHADYVK-------NMITGA-----AQMDGGILVVSAPDGPMPQTKEHILL-ARQVGVPSLVCFLNKV 191 (330)
Q Consensus 125 ~~~~~i~iiDtPG~~~~~~-------~~~~~~-----~~~d~~l~vvda~~~~~~~~~~~l~~-~~~~~~p~iivviNK~ 191 (330)
..+..+.|+||||...... .....+ ..+|.+++|+|+..+ ......... ....++. - +|+||+
T Consensus 184 ~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i~-g-vVlTk~ 259 (306)
T 1vma_A 184 ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVT-G-IILTKL 259 (306)
T ss_dssp HTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCC-E-EEEECG
T ss_pred hcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCCC-E-EEEeCC
Confidence 2356799999999532211 112222 137889999999743 112222222 2234555 3 578999
Q ss_pred cCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeec
Q 020176 192 DLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSA 228 (330)
Q Consensus 192 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa 228 (330)
|....-. .+..+....+ .|+.+++.
T Consensus 260 D~~~~gG-------~~l~~~~~~~-----~Pi~~i~~ 284 (306)
T 1vma_A 260 DGTAKGG-------ITLAIARELG-----IPIKFIGV 284 (306)
T ss_dssp GGCSCTT-------HHHHHHHHHC-----CCEEEEEC
T ss_pred CCccchH-------HHHHHHHHHC-----CCEEEEeC
Confidence 9765321 1233344444 57777653
No 233
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.33 E-value=1.6e-06 Score=77.48 Aligned_cols=126 Identities=19% Similarity=0.177 Sum_probs=69.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh-----hhh-----hcCceEE-eEEE----------Ee
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-----EEK-----KRGITIA-TAHV----------EY 123 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~-----~e~-----~~g~t~~-~~~~----------~~ 123 (330)
...|+++|++|+||||++..|.......|........+..... ..- ..++.+- .... .+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~l 184 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAI 184 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHHH
Confidence 4578999999999999999998877666544333221111111 000 1222221 0000 00
Q ss_pred ---eeCCeeEEEEeCCCchhhH----HHHH---Hhh-----hccCeEEEEEeCCCCCchhhHHHHHHHHHcC--CCeEEE
Q 020176 124 ---ETAKRHYAHVDCPGHADYV----KNMI---TGA-----AQMDGGILVVSAPDGPMPQTKEHILLARQVG--VPSLVC 186 (330)
Q Consensus 124 ---~~~~~~i~iiDtPG~~~~~----~~~~---~~~-----~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~--~p~iiv 186 (330)
...++.++||||||..... .... ..+ ..+|.+++|+++..+ .. .+..+..++ .+..=+
T Consensus 185 ~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~---~l~~~~~~~~~~~i~Gv 259 (320)
T 1zu4_A 185 KKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QN---GVIQAEEFSKVADVSGI 259 (320)
T ss_dssp HHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HH---HHHHHHHHTTTSCCCEE
T ss_pred HHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HH---HHHHHHHHhhcCCCcEE
Confidence 1246789999999954432 1111 111 237899999999753 22 222233322 232236
Q ss_pred EEeeccCcC
Q 020176 187 FLNKVDLVE 195 (330)
Q Consensus 187 viNK~D~~~ 195 (330)
|+||+|...
T Consensus 260 Vltk~d~~~ 268 (320)
T 1zu4_A 260 ILTKMDSTS 268 (320)
T ss_dssp EEECGGGCS
T ss_pred EEeCCCCCC
Confidence 799999764
No 234
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.32 E-value=1.3e-06 Score=72.13 Aligned_cols=111 Identities=13% Similarity=0.049 Sum_probs=63.4
Q ss_pred eEEEEeCC------CchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHH----HHH----cCCCeEEEEEeec-cC
Q 020176 129 HYAHVDCP------GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILL----ARQ----VGVPSLVCFLNKV-DL 193 (330)
Q Consensus 129 ~i~iiDtP------G~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~----~~~----~~~p~iivviNK~-D~ 193 (330)
++....+| |+..+...|..++..+|++|||||+++......++.+.. +.. .++| ++|+.||. |+
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gap-LLVlANKqqDl 175 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGD 175 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSC-EEEEEEESSTT
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCe-EEEEeCCCcCc
Confidence 34455666 677888888999999999999999987533334444322 211 3678 88888995 67
Q ss_pred cChHHHHHHHHHHHHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 194 VEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
...-.. . ++.+.+....+. ..+.|.++||++| +|+.+-++||.+.+.
T Consensus 176 p~Ams~-~----EI~e~L~L~~l~-R~W~Iq~csA~TG----------eGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 176 VKRMPC-F----YLAHELHLNLLN-HPWLVQDTEAETL----------TGFLNGIEWILEEVE 222 (227)
T ss_dssp SCBCCH-H----HHHHHTTGGGGC-SCEEEEEEETTTC----------TTHHHHHHHHTTTTT
T ss_pred cCCCCH-H----HHHHHcCCcCCC-CCEEEEEeECCCC----------cCHHHHHHHHHHHHH
Confidence 542111 1 222222211122 4688999999997 678888999887654
No 235
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.18 E-value=1.8e-06 Score=74.82 Aligned_cols=93 Identities=13% Similarity=0.089 Sum_probs=59.6
Q ss_pred CCchhh-HHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhc
Q 020176 136 PGHADY-VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (330)
Q Consensus 136 PG~~~~-~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
|||... .+++...+..+|+++.|+|+..+........ .++ ++| .++|+||+|+++.+. . +...++++..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll---~k~-~iivlNK~DL~~~~~----~-~~~~~~~~~~ 74 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS---RKE-TIILLNKVDIADEKT----T-KKWVEFFKKQ 74 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT---TSE-EEEEEECGGGSCHHH----H-HHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc---CCC-cEEEEECccCCCHHH----H-HHHHHHHHHc
Confidence 887754 4577788889999999999987655432111 112 777 778999999998532 1 2334445544
Q ss_pred CCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhh
Q 020176 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (330)
Q Consensus 215 ~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~ 254 (330)
+ .|+ ++||+++ .++.+|++.+...
T Consensus 75 g-----~~v-~iSa~~~----------~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 75 G-----KRV-ITTHKGE----------PRKVLLKKLSFDR 98 (262)
T ss_dssp T-----CCE-EECCTTS----------CHHHHHHHHCCCT
T ss_pred C-----CeE-EEECCCC----------cCHHHHHHHHHHh
Confidence 4 467 8999886 4577777776654
No 236
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.16 E-value=8.9e-06 Score=75.14 Aligned_cols=127 Identities=20% Similarity=0.203 Sum_probs=70.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCC-hhh------hhcCceEEeEEE-----E--------ee
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA-PEE------KKRGITIATAHV-----E--------YE 124 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~-~~e------~~~g~t~~~~~~-----~--------~~ 124 (330)
...|+++|..|+||||++..|.......|........+.... ..+ ...++.+-.... . +.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~ 177 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999987776655433322111111 011 112332211100 0 01
Q ss_pred eCCeeEEEEeCCCchh----hHHHHH--HhhhccCeEEEEEeCCCCCchhhHHHHHHHH-HcCCCeEEEEEeeccCcC
Q 020176 125 TAKRHYAHVDCPGHAD----YVKNMI--TGAAQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 125 ~~~~~i~iiDtPG~~~----~~~~~~--~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~-~~~~p~iivviNK~D~~~ 195 (330)
..++.++||||||... ...+.. .....+|.+++|+|+..+ ......+.... ..++. -+|+||+|...
T Consensus 178 ~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~~l~i~--GVIlTKlD~~~ 251 (425)
T 2ffh_A 178 LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVT--GLVLTKLDGDA 251 (425)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHTCCC--EEEEESGGGCS
T ss_pred HCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHhcCCce--EEEEeCcCCcc
Confidence 2456899999999532 233221 122358999999999754 22222222222 23333 46899999764
No 237
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.15 E-value=1.1e-05 Score=71.40 Aligned_cols=127 Identities=19% Similarity=0.168 Sum_probs=68.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh-hh------hhcCceEEeEEEE----------e---e
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-EE------KKRGITIATAHVE----------Y---E 124 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~-~e------~~~g~t~~~~~~~----------~---~ 124 (330)
.-.|+++|++|+|||||++.|.+.....+........+..... .+ ...++..-..... + .
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~ 181 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK 181 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999999876654433222211111110 00 1122222111000 0 0
Q ss_pred eCCeeEEEEeCCCchh----hHHHH---HHh-----hhccCeEEEEEeCCCCCchhhHHHHHHH-HHcCCCeEEEEEeec
Q 020176 125 TAKRHYAHVDCPGHAD----YVKNM---ITG-----AAQMDGGILVVSAPDGPMPQTKEHILLA-RQVGVPSLVCFLNKV 191 (330)
Q Consensus 125 ~~~~~i~iiDtPG~~~----~~~~~---~~~-----~~~~d~~l~vvda~~~~~~~~~~~l~~~-~~~~~p~iivviNK~ 191 (330)
..+..+.++||+|... +..+. ... ...++.+++++|+..+.. ..+.+..+ ...++. + +++||.
T Consensus 182 ~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~t-~-iivTh~ 257 (304)
T 1rj9_A 182 ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGLT-G-VIVTKL 257 (304)
T ss_dssp HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCCS-E-EEEECT
T ss_pred hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCCc-E-EEEECC
Confidence 1234578999999432 22211 111 124678899999876532 33333333 345776 5 679999
Q ss_pred cCcC
Q 020176 192 DLVE 195 (330)
Q Consensus 192 D~~~ 195 (330)
|...
T Consensus 258 d~~a 261 (304)
T 1rj9_A 258 DGTA 261 (304)
T ss_dssp TSSC
T ss_pred cccc
Confidence 9764
No 238
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.14 E-value=2.1e-06 Score=75.80 Aligned_cols=129 Identities=16% Similarity=0.099 Sum_probs=67.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHh-cCccceeeccccCCC-hhh------hhcCceEEeEE----E--Ee-eeCCee
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAE-EGKAKAIAFDEIDKA-PEE------KKRGITIATAH----V--EY-ETAKRH 129 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~~~~-~~e------~~~g~t~~~~~----~--~~-~~~~~~ 129 (330)
...|+++|++|+||||++..|...... .|+.......+.... ..+ ...|....... . .+ ...+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 347899999999999999999987764 564333222111111 000 01121110000 0 00 113568
Q ss_pred EEEEeCCCchhh----HHHHHHhhh--ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh
Q 020176 130 YAHVDCPGHADY----VKNMITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (330)
Q Consensus 130 i~iiDtPG~~~~----~~~~~~~~~--~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~ 196 (330)
+.|+||||.... +.+....+. ..|.+++|+|++.+. ....+....+...++. -+|+||+|....
T Consensus 185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~--giVltk~D~~~~ 254 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVN--QYIFTKIDETTS 254 (296)
T ss_dssp EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCC--EEEEECTTTCSC
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCC--EEEEeCCCcccc
Confidence 999999995432 222223332 367789999987542 1111112222222333 356899998753
No 239
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.12 E-value=7.4e-06 Score=79.53 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
..|+|+|+.|||||||++.|++..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 359999999999999999999754
No 240
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.09 E-value=1.4e-06 Score=75.49 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (330)
.+++++|.+|+|||||+|+|.+. ..... ....|+|........ +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~------~~~~~---------~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK------RASSV---------GAQPGITKGIQWFSL---ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT------CC-------------------CCSCEEEC---TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcc------ccccc---------CCCCCCccceEEEEe---CCCEEEEECCCccc
Confidence 58999999999999999999842 11111 111244443322222 34689999999654
No 241
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.06 E-value=5.4e-05 Score=66.71 Aligned_cols=127 Identities=19% Similarity=0.183 Sum_probs=68.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChh-------hhhcCceEEeEEE-------------Eee
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPE-------EKKRGITIATAHV-------------EYE 124 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~-------e~~~g~t~~~~~~-------------~~~ 124 (330)
...|+++|+.|+||||++..|.......|........+...... ....+........ ...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34788999999999999999988776655433322111111100 0112222211000 001
Q ss_pred eCCeeEEEEeCCCchh----hHHHHHHh--hhccCeEEEEEeCCCCCchhhHHHHHHHH-HcCCCeEEEEEeeccCcC
Q 020176 125 TAKRHYAHVDCPGHAD----YVKNMITG--AAQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 125 ~~~~~i~iiDtPG~~~----~~~~~~~~--~~~~d~~l~vvda~~~~~~~~~~~l~~~~-~~~~p~iivviNK~D~~~ 195 (330)
..+..+.|+||||... ........ ...+|.+++|+|+..+ ....+...... ..++. -+|+||+|...
T Consensus 178 ~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~~~~i~--givlnk~d~~~ 251 (295)
T 1ls1_A 178 LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVT--GLVLTKLDGDA 251 (295)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCCC--EEEEECGGGCS
T ss_pred hCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhhcCCCC--EEEEECCCCCc
Confidence 1457899999998432 22222221 1258889999998743 22222222222 23333 36799999765
No 242
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.99 E-value=6.6e-06 Score=70.36 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=48.0
Q ss_pred CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeecc
Q 020176 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D 192 (330)
..+.++|||||+.... .....+..+|.+++++.++..........+..+...+++.+.+|+||.+
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 4578999999885443 3344567899999999986544444555666677788877889999998
No 243
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.95 E-value=1.8e-05 Score=68.56 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=66.8
Q ss_pred CCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHH----HHHH---H-cCCCeEEEEEee-ccCcChHHHHHHHHHH
Q 020176 136 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHI----LLAR---Q-VGVPSLVCFLNK-VDLVEDEELLELVEME 206 (330)
Q Consensus 136 PG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l----~~~~---~-~~~p~iivviNK-~D~~~~~~~~~~~~~~ 206 (330)
.|+..+...+..++..+|++|||||+++......++.+ .++. . .++| ++|+.|| -|+...-.. . +
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Ams~-~----E 268 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRMPC-F----Y 268 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBCCH-H----H
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCCCH-H----H
Confidence 46788888899999999999999999875332233322 2221 1 4788 8888897 577653211 1 2
Q ss_pred HHHHHHhcCCCCCCccEEEeeccccccCCccccchhhHHHHHHHHhhhCC
Q 020176 207 LRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (330)
Q Consensus 207 ~~~~~~~~~~~~~~~pv~~~Sa~~~~~g~~~~~~~~~i~~ll~~l~~~~~ 256 (330)
+.+.+..-.+. ..+.|.++||++| +|+.+-+++|.+.+.
T Consensus 269 I~e~L~L~~l~-r~W~Iq~csA~tG----------eGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 269 LAHELHLNLLN-HPWLVQDTEAETL----------TGFLNGIEWILEEVE 307 (312)
T ss_dssp HHHHTTGGGGC-SCEEEEEEETTTC----------TTHHHHHHHHHHHSC
T ss_pred HHHHcCCccCC-CcEEEEecccCCC----------cCHHHHHHHHHHHHH
Confidence 22222211122 4578999999997 578888888887664
No 244
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.94 E-value=6.5e-05 Score=62.66 Aligned_cols=123 Identities=12% Similarity=0.043 Sum_probs=73.4
Q ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh-hhhh---cCceEEeEEE-Ee--eeCCeeEEEEeCCCc
Q 020176 67 NVGTI-GHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-EEKK---RGITIATAHV-EY--ETAKRHYAHVDCPGH 138 (330)
Q Consensus 67 ~I~v~-G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~-~e~~---~g~t~~~~~~-~~--~~~~~~i~iiDtPG~ 138 (330)
.|+|+ +..|+||||+.-.|.......| ..... +.|... ...- .......... .+ -...+.++++|||+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli--D~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~ 78 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI--DGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQAR 78 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE--EECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE--ECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCC
Confidence 35554 7789999999999988877777 33322 112111 0000 0000000000 00 013467999999986
Q ss_pred -hhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHc-CCCeEEEEEeeccCcC
Q 020176 139 -ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GVPSLVCFLNKVDLVE 195 (330)
Q Consensus 139 -~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~-~~p~iivviNK~D~~~ 195 (330)
... .....+..+|.+|+++.++..........+..+... +.+ +.+|+|++|...
T Consensus 79 ~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~ 134 (209)
T 3cwq_A 79 PEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYP 134 (209)
T ss_dssp CSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTT
T ss_pred cCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCcc
Confidence 432 233456689999999998764445555666666664 566 778999999764
No 245
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.91 E-value=0.00022 Score=61.58 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=47.1
Q ss_pred CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccC
Q 020176 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~ 193 (330)
..+.++|||||+...........+..+|.+|+|+.+...........+..+...+++.+-+|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 45679999999854322112222336899999998877666666677777777788844388999874
No 246
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.88 E-value=9.3e-05 Score=65.36 Aligned_cols=126 Identities=18% Similarity=0.166 Sum_probs=68.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh------hh-hhcCceEEeEEEE-e-------------e
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP------EE-KKRGITIATAHVE-Y-------------E 124 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~------~e-~~~g~t~~~~~~~-~-------------~ 124 (330)
-.++++|+.|+|||||++.|.+.....+........+..... .. ...++..-..... . .
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~ 180 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 180 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHH
Confidence 478999999999999999999876654432222211111110 00 1123333221111 0 0
Q ss_pred eCCeeEEEEeCCCchhh----HHHH---HHhh-----hccCeEEEEEeCCCCCchhhHHHHHHHH-HcCCCeEEEEEeec
Q 020176 125 TAKRHYAHVDCPGHADY----VKNM---ITGA-----AQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKV 191 (330)
Q Consensus 125 ~~~~~i~iiDtPG~~~~----~~~~---~~~~-----~~~d~~l~vvda~~~~~~~~~~~l~~~~-~~~~p~iivviNK~ 191 (330)
..+....++||.|...+ ..+. ...+ ..++-+++|+|++.+..... .+..+. ..++. + +++||+
T Consensus 181 ~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~g~t-~-iiiThl 256 (302)
T 3b9q_A 181 EEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVGIT-G-LILTKL 256 (302)
T ss_dssp HTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTCCC-E-EEEECC
T ss_pred HcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhcCCC-E-EEEeCC
Confidence 12345689999995332 1111 1111 23667799999776644332 233333 45776 5 679999
Q ss_pred cCcC
Q 020176 192 DLVE 195 (330)
Q Consensus 192 D~~~ 195 (330)
|...
T Consensus 257 D~~~ 260 (302)
T 3b9q_A 257 DGSA 260 (302)
T ss_dssp SSCS
T ss_pred CCCC
Confidence 9764
No 247
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.88 E-value=4e-05 Score=71.14 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.5
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHH
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
..+...|+|+|.+++|||||+|.|++..
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~ 91 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYM 91 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhc
Confidence 4566789999999999999999999764
No 248
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.79 E-value=0.00012 Score=66.19 Aligned_cols=127 Identities=18% Similarity=0.166 Sum_probs=68.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCCh------h-hhhcCceEEeEEEE-e-------------
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP------E-EKKRGITIATAHVE-Y------------- 123 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~------~-e~~~g~t~~~~~~~-~------------- 123 (330)
.-.|+++|+.|+|||||++.|.+.....+........+..... . ....++.+-..... .
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~ 236 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 236 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHH
Confidence 3478999999999999999999876654433222211111110 0 01123332211110 0
Q ss_pred eeCCeeEEEEeCCCchhh----HHH---HHHh-----hhccCeEEEEEeCCCCCchhhHHHHHHH-HHcCCCeEEEEEee
Q 020176 124 ETAKRHYAHVDCPGHADY----VKN---MITG-----AAQMDGGILVVSAPDGPMPQTKEHILLA-RQVGVPSLVCFLNK 190 (330)
Q Consensus 124 ~~~~~~i~iiDtPG~~~~----~~~---~~~~-----~~~~d~~l~vvda~~~~~~~~~~~l~~~-~~~~~p~iivviNK 190 (330)
...+....++||.|...+ ..+ .... ...++-+++|+|++.+..... .+..+ ...++. + +++||
T Consensus 237 ~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~g~t-~-iiiTh 312 (359)
T 2og2_A 237 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVGIT-G-LILTK 312 (359)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTCCC-E-EEEES
T ss_pred HhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhcCCe-E-EEEec
Confidence 011345689999995332 111 1111 124667799999776544332 22333 345776 4 67999
Q ss_pred ccCcC
Q 020176 191 VDLVE 195 (330)
Q Consensus 191 ~D~~~ 195 (330)
.|...
T Consensus 313 lD~~~ 317 (359)
T 2og2_A 313 LDGSA 317 (359)
T ss_dssp CTTCS
T ss_pred Ccccc
Confidence 99765
No 249
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.77 E-value=5.6e-05 Score=66.25 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=51.4
Q ss_pred eeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
+.++|||||....... .......+|.+|+|+.+.........+.+..+...+.+.+-+|+||+|...
T Consensus 202 yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 5689999998654322 233355799999999998776677777888888888876778999999654
No 250
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.77 E-value=0.00014 Score=62.63 Aligned_cols=67 Identities=15% Similarity=0.260 Sum_probs=48.7
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
.+.++|||||+... ......+..+|.+|+|+.+...........+..+...+.+.+-+|+|++|...
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 176 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLG 176 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCccc
Confidence 46799999997544 33455567899999999886544445556666666667776778999999754
No 251
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.72 E-value=3.5e-05 Score=68.10 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=51.2
Q ss_pred hhhccCeEEEEEeCCCCCchhh--HHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEE
Q 020176 148 GAAQMDGGILVVSAPDGPMPQT--KEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIR 225 (330)
Q Consensus 148 ~~~~~d~~l~vvda~~~~~~~~--~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~ 225 (330)
.+.++|.+++|+|+..+..... .+++..+...++| .++|+||+|+.++.+..+ ..+++.+.++..| .++++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~-~vivlnK~DL~~~~~~~~-~~~~~~~~y~~~g-----~~v~~ 155 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQ-PIICITKMDLIEDQDTED-TIQAYAEDYRNIG-----YDVYL 155 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCE-EEEEEECGGGCCCHHHHH-HHHHHHHHHHHHT-----CCEEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEECCccCchhhhHH-HHHHHHHHHHhCC-----CeEEE
Confidence 5778999999999986544332 3334444457888 568999999998543101 1224445555555 47999
Q ss_pred eeccccc
Q 020176 226 GSATSAL 232 (330)
Q Consensus 226 ~Sa~~~~ 232 (330)
+||.++.
T Consensus 156 ~sa~~~~ 162 (307)
T 1t9h_A 156 TSSKDQD 162 (307)
T ss_dssp CCHHHHT
T ss_pred EecCCCC
Confidence 9988753
No 252
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.69 E-value=8.5e-05 Score=64.60 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=48.0
Q ss_pred eeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
..++|||||+...... .......+|.+++|+.+...........+..+...+.+.+-+|+|++|...
T Consensus 192 yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp CSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred CCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 5789999998644321 222335689999999998776677777777787778874448899999643
No 253
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.69 E-value=0.00012 Score=64.58 Aligned_cols=67 Identities=16% Similarity=0.045 Sum_probs=49.8
Q ss_pred eeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
..++|||||+...... .......+|.+|+|+.+.........+.+..+...+.+.+-+|+|++|...
T Consensus 214 yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRA 280 (299)
T ss_dssp CSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCCC
T ss_pred CCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccCC
Confidence 5789999998654322 222345799999999998877777788888888888774557899998653
No 254
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.65 E-value=0.00085 Score=58.86 Aligned_cols=67 Identities=10% Similarity=0.022 Sum_probs=44.6
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHc------CCCeEEEEEeeccCcC
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV------GVPSLVCFLNKVDLVE 195 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~------~~p~iivviNK~D~~~ 195 (330)
.+.++|||||+..... ....+..+|.+|+++.+...........+..+... +++.+-+|+|+.|...
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 3679999999865432 23344569999999998765554455555544432 5553447899999755
No 255
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.61 E-value=0.00028 Score=59.64 Aligned_cols=67 Identities=16% Similarity=0.286 Sum_probs=48.9
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
.+.++|+|||+... ......+..+|.+++|+.+...........+..+...+.+.+-+|+||.|...
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 36799999988544 33455677899999999886544445556666777777776778999999654
No 256
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.48 E-value=0.00019 Score=63.38 Aligned_cols=66 Identities=12% Similarity=0.088 Sum_probs=41.8
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHH----cCCCeEEEEEeeccC
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ----VGVPSLVCFLNKVDL 193 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~----~~~p~iivviNK~D~ 193 (330)
.+.++|||||+..... .+...+..+|.+++|+.+...........+..+.. .+++.+-+|+|+++.
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 4689999998853311 12344677999999998865333444445555554 234423378999984
No 257
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.40 E-value=0.00076 Score=58.14 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=44.1
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcC--CCeEEEEEeeccC
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG--VPSLVCFLNKVDL 193 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~--~p~iivviNK~D~ 193 (330)
.+.++|||||+.... .....+..+|.+++++.+...........+..+...+ .+ +.+|+|+++.
T Consensus 144 ~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~-~~vv~N~~~~ 209 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLP-IFLIITRFKK 209 (267)
T ss_dssp TCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCC-EEEEEEEECT
T ss_pred CCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCC-EEEEEecccC
Confidence 467999999985432 2445566799999999986544444455556666554 45 6689999953
No 258
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.39 E-value=0.00066 Score=58.11 Aligned_cols=65 Identities=8% Similarity=0.077 Sum_probs=43.7
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcC--------CCeEEEEEeeccC
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG--------VPSLVCFLNKVDL 193 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~--------~p~iivviNK~D~ 193 (330)
.+.++|+|||+.... .....+..+|.+++|+.+...........+..+...+ ...+-+|+|+.|.
T Consensus 113 ~yD~viiD~p~~~~~--~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSSH--HHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCCH--HHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 578999999985442 4455667899999999986533344444455544333 1346789999984
No 259
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.36 E-value=0.00024 Score=52.67 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=56.6
Q ss_pred EEEEEEEEeeCCCce---EEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 267 LMPIEDVFSIQGRGT---VATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 267 ~~~i~~~~~~~~~G~---v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
...|.++|.++..|+ |+..+|..|.|+.+..+++..++.. -+..++.|+.+++.+++++..||
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~v-I~eG~i~SLkrfKdDVkEV~~G~ 77 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQV-IWKGSLTSLKHHKDDISVIKTGM 77 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEE-EEEECCSEEESSSSCCSEECTTC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEE-EEEeEehhhcccccccceecCCC
Confidence 567889999998888 9999999999999999999987654 56789999999999999999986
No 260
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.36 E-value=0.0012 Score=59.45 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=46.0
Q ss_pred hhhccCeEEEEEeCCCCCc--hhhHHHHHHHHHcCCCeEEEEEeeccCcChHHHHHHHHHHHHHHHHhcCCCCCCccEEE
Q 020176 148 GAAQMDGGILVVSAPDGPM--PQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIR 225 (330)
Q Consensus 148 ~~~~~d~~l~vvda~~~~~--~~~~~~l~~~~~~~~p~iivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~ 225 (330)
.+.++|.+++|.+ ..+.. ....+++..+...++| .++|+||+|+.++++ .+.+. ++...++..| +++++
T Consensus 127 i~anvD~v~iv~a-~~P~~~~~~i~r~L~~a~~~~~~-~iivlNK~DL~~~~~-~~~~~-~~~~~y~~~G-----~~v~~ 197 (358)
T 2rcn_A 127 IAANIDQIVIVSA-ILPELSLNIIDRYLVGCETLQVE-PLIVLNKIDLLDDEG-MDFVN-EQMDIYRNIG-----YRVLM 197 (358)
T ss_dssp EEECCCEEEEEEE-STTTCCHHHHHHHHHHHHHHTCE-EEEEEECGGGCCHHH-HHHHH-HHHHHHHTTT-----CCEEE
T ss_pred HHhcCCEEEEEEe-CCCCCCHHHHHHHHHHHHhcCCC-EEEEEECccCCCchh-HHHHH-HHHHHHHhCC-----CcEEE
Confidence 3568899987654 44322 1223344445567888 568999999998542 11122 3334455555 46999
Q ss_pred eecccc
Q 020176 226 GSATSA 231 (330)
Q Consensus 226 ~Sa~~~ 231 (330)
+||.++
T Consensus 198 ~Sa~~~ 203 (358)
T 2rcn_A 198 VSSHTQ 203 (358)
T ss_dssp CBTTTT
T ss_pred EecCCC
Confidence 999886
No 261
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.35 E-value=7.3e-05 Score=53.55 Aligned_cols=63 Identities=14% Similarity=0.229 Sum_probs=56.5
Q ss_pred EEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 267 LMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 267 ~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
...|.++|.++..|+|+..+|..|.|+.+..+++..++.. -+..++.|+.+++.+++++..||
T Consensus 8 ~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~v-I~eG~i~SLkr~KddV~EV~~G~ 70 (99)
T 1d1n_A 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIV-VYEGEIDSLKRYKDDVREVAQGY 70 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSE-EEEEECSEEECSSSCCSCCBTTC
T ss_pred EEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEE-EEEeEEhhhcccccccceECCCc
Confidence 4567889999999999999999999999999999987654 56789999999999999999986
No 262
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=97.32 E-value=0.0087 Score=53.80 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=43.5
Q ss_pred cCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcCh-----HHHHHHHHHHHHHHHHhcC
Q 020176 152 MDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED-----EELLELVEMELRELLSFYK 215 (330)
Q Consensus 152 ~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~~-----~~~~~~~~~~~~~~~~~~~ 215 (330)
.+.+++|..+..-......+.+..+...++|..-+|+|++..... ....+.....++++.+.++
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 305 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFG 305 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHST
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcC
Confidence 367888888876666778888899999999977789999986521 1111222344555666654
No 263
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=97.29 E-value=0.00059 Score=59.67 Aligned_cols=67 Identities=12% Similarity=-0.091 Sum_probs=38.6
Q ss_pred CeeEEEEeCCCchhhHHH-HHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHH----cCCCeEEEEEeeccC
Q 020176 127 KRHYAHVDCPGHADYVKN-MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ----VGVPSLVCFLNKVDL 193 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~-~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~----~~~p~iivviNK~D~ 193 (330)
.+.++||||||....... .......+|.+++++.+...........+..+.. .+.+.+-+|+|+.+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 568999999984321000 0111246999999998754322323333444433 255545578999874
No 264
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=97.27 E-value=0.00037 Score=60.15 Aligned_cols=68 Identities=13% Similarity=-0.012 Sum_probs=39.7
Q ss_pred CeeEEEEeCCCchhhHHH-HHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHc----CCCeEEEEEeeccCc
Q 020176 127 KRHYAHVDCPGHADYVKN-MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV----GVPSLVCFLNKVDLV 194 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~-~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~----~~p~iivviNK~D~~ 194 (330)
.+.++||||||....... .......+|.+++++.+...........+..+... +.+.+-+|+|+.+..
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~ 187 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA 187 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc
Confidence 468999999984321000 01112469999999988643333333444444432 455456789999753
No 265
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.26 E-value=0.0017 Score=55.59 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=42.2
Q ss_pred CCeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHH------cCCCeEEEEEeeccCcC
Q 020176 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ------VGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~------~~~p~iivviNK~D~~~ 195 (330)
..+.++|||||+..... ....+..+|.+++++.+...........+..+.. .+++.+-+|+|+.|...
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCc
Confidence 45689999999854432 2344567999999999865333333333333332 14452237899998654
No 266
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=97.26 E-value=0.00035 Score=59.31 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=47.5
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcC--CCeEEEEEeeccCcC
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG--VPSLVCFLNKVDLVE 195 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~--~p~iivviNK~D~~~ 195 (330)
.+.++|+|||+.... .....+..+|.+++++.+...........+..+...+ .+.+-+|+|++|...
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 467999999985432 3344577899999999986544455566666776666 444778999998654
No 267
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.20 E-value=0.015 Score=51.72 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=34.2
Q ss_pred CeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 153 DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 153 d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
+.+++|..+..-...+....+..+...++|..-+|+|++...
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 478888888666667778888999999999777899999765
No 268
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=97.13 E-value=0.0018 Score=56.51 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=26.6
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCC
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD 163 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~ 163 (330)
.+.++|||||+... ......+..+|.+|+++.+..
T Consensus 103 ~yD~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 103 ECDFILIDTPGGDS--AITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HCSEEEEECCSSCC--HHHHHHHHTCSEEEEEEESSH
T ss_pred cCCEEEEcCCCCcc--HHHHHHHHHCCEEEEEEcCCc
Confidence 35799999998642 345566778999999998863
No 269
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.06 E-value=0.0019 Score=60.82 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=63.6
Q ss_pred HHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeec
Q 020176 245 LKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILD 324 (330)
Q Consensus 245 ~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~ 324 (330)
+++-+++...++ |.....---...|.++|+.+..|.|+..+|..|.|+.|..+++...+.. -+..+|.||++++++++
T Consensus 389 ~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~-i~~g~i~sl~~~k~~v~ 466 (501)
T 1zo1_I 389 DEVKAAMSGMLS-PELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVV-IYEGELESLRRFKDDVN 466 (501)
T ss_dssp HHTHHHHTTTSS-TTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCC-CEEEEBCCEEETTEEES
T ss_pred HHHHHHHHhhcC-ceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeE-EEEEEEehhcccCcccc
Confidence 444444544444 3332333334557789999888999999999999999999998765542 46789999999999999
Q ss_pred EEecCC
Q 020176 325 RGEVSW 330 (330)
Q Consensus 325 ~a~~g~ 330 (330)
++..||
T Consensus 467 e~~~g~ 472 (501)
T 1zo1_I 467 EVRNGM 472 (501)
T ss_dssp EEETTC
T ss_pred EECCCC
Confidence 999986
No 270
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.03 E-value=0.00038 Score=65.43 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=57.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccceeeccccCCChhhhhcCceEEeEEEEeeeCCeeEEEEeCCCchh--h
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--Y 141 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--~ 141 (330)
....|+++|.+|+||||+.+.|.......+....... .+... +...|. .....++|+.|... +
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~--~d~~r-~~~~g~------------~~~~~ifd~~g~~~~r~ 102 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN--VGQYR-RDMVKT------------YKSFEFFLPDNEEGLKI 102 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE--HHHHH-HHHHCS------------CCCGGGGCTTCHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe--cchhh-hhhccC------------CCcccccCCCCHHHHHH
Confidence 3468999999999999999999865443221111000 00000 000010 11235778888632 2
Q ss_pred HHHH--------HHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCC
Q 020176 142 VKNM--------ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVP 182 (330)
Q Consensus 142 ~~~~--------~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p 182 (330)
...+ ..++...++.++|+|++......-..++..+...+.+
T Consensus 103 re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~ 151 (469)
T 1bif_A 103 RKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYK 151 (469)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCc
Confidence 2222 3344456788999999876443444444566666766
No 271
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.83 E-value=0.0002 Score=63.26 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..++++|++|+|||||+|.|.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47899999999999999999853
No 272
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.82 E-value=0.011 Score=56.98 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=33.4
Q ss_pred CeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 153 DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 153 d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
+.+++|+.+.......+...+..+...+++..-+|+|+++-..
T Consensus 199 t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~~ 241 (589)
T 1ihu_A 199 TRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKT 241 (589)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCGG
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCcc
Confidence 3688888887655667777888888889887778899998543
No 273
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.78 E-value=0.00085 Score=54.32 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
+++++|++|+|||||++.|.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 274
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.66 E-value=0.00082 Score=55.34 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
..++|+|++|+|||||++.|.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999998754
No 275
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=96.64 E-value=0.032 Score=50.19 Aligned_cols=42 Identities=10% Similarity=-0.059 Sum_probs=34.5
Q ss_pred ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeecc
Q 020176 151 QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (330)
Q Consensus 151 ~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D 192 (330)
.+|.+++|..+.......+...+..+...+++..-+|+|++.
T Consensus 234 ~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 578899999886655567778888888899997778999998
No 276
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.63 E-value=0.001 Score=53.74 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
.++|+|++|||||||++.|.+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999998653
No 277
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.61 E-value=0.0071 Score=55.90 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.0
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHHH
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
..+...|+|+|..++|||+|+|.|++..
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~ 91 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYM 91 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHh
Confidence 4567788999999999999999887644
No 278
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=96.55 E-value=0.26 Score=43.62 Aligned_cols=41 Identities=12% Similarity=-0.019 Sum_probs=32.7
Q ss_pred CeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccC
Q 020176 153 DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (330)
Q Consensus 153 d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~ 193 (330)
+.+++|..+......++...+..+...+++..-+|+|++..
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~ 262 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLL 262 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 46888888766556677888888999999977789999983
No 279
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=96.52 E-value=0.05 Score=48.75 Aligned_cols=42 Identities=12% Similarity=-0.059 Sum_probs=33.6
Q ss_pred CeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 153 DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 153 d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
+.+++|..+..-....+...+..+...+++..-+|+|++...
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~ 273 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFA 273 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 467888887665567778888899999999777899998764
No 280
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.52 E-value=0.002 Score=53.27 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=24.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhc
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEE 92 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~ 92 (330)
+...|+|+|++|+|||||++.|.+.....
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 34579999999999999999998876543
No 281
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=96.52 E-value=0.032 Score=46.28 Aligned_cols=68 Identities=16% Similarity=0.035 Sum_probs=40.6
Q ss_pred CeeEEEEeCCCchhh--H--HHHHHhhhcc-CeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 127 KRHYAHVDCPGHADY--V--KNMITGAAQM-DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~--~--~~~~~~~~~~-d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
.+.++||||||.... . .......... +.+++|+.+......+....++.+...+.+..-+|+|++|..
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 568999999974321 0 0011111112 347888887554445555666666667777454789999864
No 282
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.51 E-value=0.37 Score=42.75 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=32.6
Q ss_pred CeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccC
Q 020176 153 DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (330)
Q Consensus 153 d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~ 193 (330)
..+++|..+..-....+.+.+..+...|++..-+|+|++..
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~ 263 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLF 263 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcC
Confidence 36777777765555777888899999999987889999874
No 283
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.46 E-value=0.011 Score=49.46 Aligned_cols=32 Identities=16% Similarity=-0.139 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCccce
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKA 97 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~ 97 (330)
.-+.+.|++|+||||++-.+.......|....
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVl 44 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYL 44 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 35678999999999998888776666665443
No 284
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.45 E-value=0.0016 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
.++|+|++|||||||++.|.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999998754
No 285
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.43 E-value=0.0016 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLA 90 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~ 90 (330)
.++|+|++|||||||++.|.+...
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999997643
No 286
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.42 E-value=0.0017 Score=53.32 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.|+|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 6899999999999999999865
No 287
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.40 E-value=0.035 Score=53.53 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=34.3
Q ss_pred ccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 151 QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 151 ~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
.+|.+++|+.+.......+...+..+...+++..-+|+|+++-.
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~ 532 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSI 532 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTT
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCC
Confidence 45788888887655556677778888888988777889999864
No 288
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.39 E-value=0.023 Score=50.94 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEG 93 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g 93 (330)
.+.|.|++|+|||||+..+.......|
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g 89 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAG 89 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 678999999999999999886554443
No 289
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.35 E-value=0.0019 Score=53.94 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999765
No 290
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.32 E-value=0.0023 Score=50.65 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
-.++++|+.|+|||||++.|.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999999999999865
No 291
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.29 E-value=0.0074 Score=57.36 Aligned_cols=85 Identities=18% Similarity=0.136 Sum_probs=67.9
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCeEEEEEEEEeeCC---CceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCc
Q 020176 244 ILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQG---RGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK 320 (330)
Q Consensus 244 i~~ll~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~---~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~ 320 (330)
++++-+++...++ |.....-.-.+.|.++|.++. .|+|+..+|..|.|+.|..+++...+.. -+..++.||++++
T Consensus 427 ~~~~~~~~~~~l~-~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~-i~~g~i~slk~~k 504 (537)
T 3izy_P 427 IEDLQEELSSRLP-CIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHV-IWKGSLISLKHHK 504 (537)
T ss_dssp HHHHHHHHSSSSS-CSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSE-EEEEECCCCCCSS
T ss_pred HHHHHHHHHhccC-CceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEE-EEEEEEehhcccC
Confidence 4566666666565 443444456788999999874 6799999999999999999999975542 3678999999999
Q ss_pred eeecEEecCC
Q 020176 321 KILDRGEVSW 330 (330)
Q Consensus 321 ~~~~~a~~g~ 330 (330)
++++++..||
T Consensus 505 ~~v~ev~~g~ 514 (537)
T 3izy_P 505 DDTSVVKTGM 514 (537)
T ss_dssp CCCSEEETTC
T ss_pred cccceEcCCC
Confidence 9999999996
No 292
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.28 E-value=0.0022 Score=53.65 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
..++|+|++|||||||++.|.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 368999999999999999998764
No 293
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.28 E-value=0.0029 Score=51.99 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|+|+|++|+|||||++.|.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999865
No 294
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.27 E-value=0.0043 Score=49.92 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g 93 (330)
..++++|++|+|||||++.|++.....|
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g 34 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG 34 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC
Confidence 3689999999999999999997655444
No 295
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.26 E-value=0.025 Score=50.79 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhc
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEE 92 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~ 92 (330)
..+.|.|++|+|||||+..+.......
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~ 88 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKM 88 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 467899999999999999998655443
No 296
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.24 E-value=0.032 Score=50.39 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCc
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGK 94 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~ 94 (330)
.+.|.|++|+|||||+-.+.......|.
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~ 103 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGG 103 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCC
Confidence 5778999999999999998865554443
No 297
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.20 E-value=0.0031 Score=52.14 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
..|+|+|++|||||||++.|.+..
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998753
No 298
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.18 E-value=0.0028 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|+++|++|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999853
No 299
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.18 E-value=0.027 Score=54.24 Aligned_cols=63 Identities=17% Similarity=0.066 Sum_probs=53.6
Q ss_pred CCCeEEEEE--EEEeeCCCceEEEEEEEeeeeecCCEEEEecCCCCCCceEEEEEEEeCceeecEEecCC
Q 020176 263 DKPFLMPIE--DVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEVSW 330 (330)
Q Consensus 263 ~~~~~~~i~--~~~~~~~~G~v~~g~v~~G~l~~g~~v~~~~~~~~~~~~~~v~si~~~~~~~~~a~~g~ 330 (330)
-.|..+.|. .+|+.+. |.|+..+|..|.|+.|..+.+ +.+ .+..+|.||+++++++++|..||
T Consensus 461 ~~~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~~---~~~g~i~sl~~~k~~v~~~~~g~ 525 (594)
T 1g7s_A 461 IKPASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DDG---ETVGTVESMQDKGENLKSASRGQ 525 (594)
T ss_dssp CCCEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-TTS---CEEEEEEEEEETTEEESEEETTC
T ss_pred eeeEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-cCC---cEEEEEehhcccCccccccCCCC
Confidence 345666665 6898877 899999999999999999987 544 26899999999999999999996
No 300
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.14 E-value=0.0027 Score=50.83 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAIT 86 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~ 86 (330)
.++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 57999999999999999754
No 301
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.13 E-value=0.0055 Score=48.96 Aligned_cols=29 Identities=28% Similarity=0.228 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCc
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGK 94 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g~ 94 (330)
..|+++|.+|+|||||+..|.......|.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~ 33 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGW 33 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCC
Confidence 36899999999999999999987665554
No 302
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.11 E-value=0.0038 Score=50.98 Aligned_cols=27 Identities=37% Similarity=0.399 Sum_probs=23.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEG 93 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g 93 (330)
.++++|++|+|||||++.|.+.....|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 589999999999999999998765444
No 303
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.10 E-value=0.0025 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|||||||++.|.+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999853
No 304
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.09 E-value=0.0039 Score=51.69 Aligned_cols=28 Identities=25% Similarity=0.175 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCc
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGK 94 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~ 94 (330)
.++++|+.|+|||||++.|.+.....|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl~p~~G~ 51 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQALQSKQ 51 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcCCe
Confidence 6899999999999999999977333344
No 305
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.07 E-value=0.0037 Score=51.70 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|+|+|++|+|||||++.|.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 36899999999999999999865
No 306
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.06 E-value=0.0058 Score=50.13 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=24.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcCc
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGK 94 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~ 94 (330)
...|+|+|++|+|||||.+.|.+.....|.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~ 54 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGK 54 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 347899999999999999999876654443
No 307
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.05 E-value=0.004 Score=51.12 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
..|+|+|++|||||||++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999998653
No 308
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.04 E-value=0.0023 Score=51.32 Aligned_cols=27 Identities=37% Similarity=0.597 Sum_probs=23.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEG 93 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g 93 (330)
.|+|+|++|+|||||++.|.+.....|
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g 30 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERG 30 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 689999999999999999997765543
No 309
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.02 E-value=0.0047 Score=53.16 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHh
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAE 91 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~ 91 (330)
-.++|+|++|+|||||++.|.+....
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCC
Confidence 47899999999999999999986554
No 310
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=96.02 E-value=0.088 Score=44.54 Aligned_cols=68 Identities=13% Similarity=0.018 Sum_probs=43.6
Q ss_pred CeeEEEEeCCCchh--h--HHHHHHhhhc-cCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCcC
Q 020176 127 KRHYAHVDCPGHAD--Y--VKNMITGAAQ-MDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (330)
Q Consensus 127 ~~~i~iiDtPG~~~--~--~~~~~~~~~~-~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~~ 195 (330)
...+.+||.+|..- . .......++. ..-+|+|+++..+....+...++.+...+++ .=+|+|+++-..
T Consensus 131 ~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~~ 203 (242)
T 3qxc_A 131 TYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNNT 203 (242)
T ss_dssp TCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTCC
T ss_pred cCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCcc
Confidence 46799999987211 0 0001111122 2337889999877666666667777778899 888999998543
No 311
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.00 E-value=0.0029 Score=53.14 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999853
No 312
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.99 E-value=0.0036 Score=53.20 Aligned_cols=22 Identities=18% Similarity=0.290 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++++|+.|+|||||++.|.+.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999854
No 313
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.99 E-value=0.0036 Score=56.30 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~ 87 (330)
.++++|++|+|||||+|.|++
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 689999999999999999994
No 314
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.97 E-value=0.0046 Score=54.41 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
-.++|+|++|+|||||++.|.+..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 378999999999999999999876
No 315
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.95 E-value=0.048 Score=49.00 Aligned_cols=28 Identities=36% Similarity=0.379 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g 93 (330)
..+.|.|++|+|||||+-.|.......|
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g 91 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREG 91 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 3678999999999999999886554443
No 316
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.93 E-value=0.0059 Score=48.73 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|+++|++|+||||+.+.|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 47899999999999999999754
No 317
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.92 E-value=0.0044 Score=49.30 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.|+|+|++|+|||||.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 318
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.92 E-value=0.0044 Score=50.25 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~ 87 (330)
.++++|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999974
No 319
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.91 E-value=0.0054 Score=50.31 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
..|+|+|++|+|||||++.|.+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 478999999999999999998654
No 320
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.89 E-value=0.0035 Score=53.11 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~ 87 (330)
.++|+|+.|+|||||++.|.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 321
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.84 E-value=0.0035 Score=52.26 Aligned_cols=22 Identities=36% Similarity=0.314 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999853
No 322
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.84 E-value=0.058 Score=44.04 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLA 90 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~ 90 (330)
.+.+.|++|+|||+|+..+.....
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999986543
No 323
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.84 E-value=0.087 Score=46.37 Aligned_cols=26 Identities=8% Similarity=0.006 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEE 92 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~ 92 (330)
.+.|.|++|+|||||+-.++......
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~ 55 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ 55 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999988887655443
No 324
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.84 E-value=0.0053 Score=49.94 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHH
Q 020176 68 VGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 68 I~v~G~~~~GKSTLi~~L~~~ 88 (330)
|+|+|++|+|||||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999854
No 325
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.84 E-value=0.0038 Score=52.60 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999853
No 326
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.83 E-value=0.0038 Score=53.11 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 327
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.83 E-value=0.0038 Score=54.18 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|||||||++.|.+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999854
No 328
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.83 E-value=0.0048 Score=54.32 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAIT 86 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~ 86 (330)
..++++|++|+|||||+|.|.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 329
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.83 E-value=0.0038 Score=53.57 Aligned_cols=22 Identities=36% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999854
No 330
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.83 E-value=0.0047 Score=52.80 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999953
No 331
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.83 E-value=0.0053 Score=50.52 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
..|+|+|++|||||||++.|....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999999999998653
No 332
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.82 E-value=0.0039 Score=53.20 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999854
No 333
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.82 E-value=0.0037 Score=53.94 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999854
No 334
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.81 E-value=0.069 Score=42.44 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHh
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAE 91 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~ 91 (330)
...+.+.|++|+|||+|+..+......
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999865443
No 335
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.81 E-value=0.0062 Score=48.26 Aligned_cols=22 Identities=23% Similarity=0.028 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.|+|+|.+||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 336
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.81 E-value=0.0039 Score=53.69 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999854
No 337
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.81 E-value=0.0095 Score=48.09 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=24.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g 93 (330)
+...|+++|.+|+||||+.+.|.......|
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~ 41 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEG 41 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 446799999999999999999987655444
No 338
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.77 E-value=0.0063 Score=53.80 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=24.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHh
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAE 91 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~ 91 (330)
.+...|+|+|++|||||||++.|.+....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34567999999999999999999876543
No 339
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.77 E-value=0.0053 Score=48.65 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAI 85 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L 85 (330)
+.|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 340
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.76 E-value=0.0051 Score=53.14 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999953
No 341
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.75 E-value=0.0043 Score=52.66 Aligned_cols=22 Identities=41% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999854
No 342
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.74 E-value=0.0043 Score=53.45 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 6899999999999999999854
No 343
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.73 E-value=0.0044 Score=53.28 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
.++|+|+.|+|||||++.|.+..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999998643
No 344
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.72 E-value=0.064 Score=47.78 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=24.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccce
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKA 97 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~ 97 (330)
-+.|.|.+|+|||||+-.+.......|....
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl 78 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVA 78 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4679999999999999998876555554433
No 345
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.71 E-value=0.0058 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~ 87 (330)
..|+|+|++|||||||++.|..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 346
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.70 E-value=0.0046 Score=53.06 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999854
No 347
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.70 E-value=0.0046 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
.++|+|+.|+|||||++.|.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999998643
No 348
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.69 E-value=0.0081 Score=48.44 Aligned_cols=26 Identities=23% Similarity=0.101 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHh
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAE 91 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~ 91 (330)
..|+|.|.+||||||+.+.|......
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999875543
No 349
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.68 E-value=0.0063 Score=49.92 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~ 87 (330)
+|+|+|.+||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999975
No 350
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.67 E-value=0.0074 Score=50.33 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.+|+|+|++|+||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 351
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.66 E-value=0.0071 Score=47.25 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHh
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAE 91 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~ 91 (330)
..++++|++|+|||||++.+.+....
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999876543
No 352
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.66 E-value=0.01 Score=53.41 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEE 92 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~ 92 (330)
.|+|+|++|+|||||++.|++.....
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCC
Confidence 79999999999999999999876654
No 353
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.65 E-value=0.0098 Score=48.80 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=23.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhc
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEE 92 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~ 92 (330)
...|+|+|.+|+|||||++.|.+.....
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~ 49 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQ 49 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4579999999999999999998765443
No 354
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.65 E-value=0.0049 Score=53.60 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999854
No 355
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.65 E-value=0.0049 Score=53.33 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999854
No 356
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.64 E-value=0.0094 Score=48.11 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAE 91 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~ 91 (330)
.|+|.|.+|+||||+.+.|......
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999876543
No 357
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.61 E-value=0.008 Score=51.04 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
..|+|+|+.|||||||++.|.+..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998653
No 358
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.61 E-value=0.0079 Score=48.30 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLA 90 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~ 90 (330)
...++++|++|+|||||+.++.+...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999987654
No 359
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.59 E-value=0.0045 Score=52.04 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=15.1
Q ss_pred EEEEEcCCCCCHHHHHHHHH-HHH
Q 020176 67 NVGTIGHVDHGKTTLTAAIT-KVL 89 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~-~~~ 89 (330)
.|+|+|++|||||||++.|. +..
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 68999999999999999998 653
No 360
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.59 E-value=0.0053 Score=52.96 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999854
No 361
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.59 E-value=0.0083 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~ 87 (330)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999985
No 362
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.59 E-value=0.023 Score=52.30 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~ 87 (330)
..-|+++|.+||||||+.+.|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999874
No 363
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.58 E-value=0.0053 Score=52.56 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++++|+.|+|||||++.|.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999853
No 364
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.56 E-value=0.0082 Score=49.17 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|+|+|.+||||||+.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999764
No 365
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.56 E-value=0.026 Score=49.90 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=27.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccce
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKA 97 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~ 97 (330)
..+.|||.|..|+||||..-.|.-.+...|+...
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVl 80 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVL 80 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEE
Confidence 4457899999999999999999877777776544
No 366
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.55 E-value=0.011 Score=47.58 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|+++|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999753
No 367
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.54 E-value=0.0089 Score=48.77 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.|+|.|.+||||||+.+.|.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999864
No 368
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.52 E-value=0.009 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
+|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999643
No 369
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.52 E-value=0.01 Score=48.00 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
...|+++|.+||||||+...|...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998753
No 370
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.52 E-value=0.01 Score=48.69 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHh
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAE 91 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~ 91 (330)
...|+|.|.+||||||+.+.|......
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 357999999999999999999865443
No 371
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.52 E-value=0.011 Score=49.84 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|++|+|||||++.|+..
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
No 372
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.51 E-value=0.0096 Score=48.74 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|+++|++|+||||+...|.+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999999754
No 373
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.50 E-value=0.0083 Score=49.30 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~ 87 (330)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 374
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.49 E-value=0.01 Score=51.85 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=24.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhc
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEE 92 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~ 92 (330)
.+...|+|+|++|+|||||++.|.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 445689999999999999999998766543
No 375
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.49 E-value=0.013 Score=51.88 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=23.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLA 90 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~ 90 (330)
...+.|+|+|++|||||||++.|.+...
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456899999999999999999876543
No 376
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.48 E-value=0.0073 Score=53.09 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~ 87 (330)
.++++|++|+|||||+|.|.+
T Consensus 171 iv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHST
T ss_pred eEEEECCCCCcHHHHHHHhcc
Confidence 689999999999999999984
No 377
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.47 E-value=0.063 Score=46.81 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=24.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHHHHhc
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEE 92 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~~~~~ 92 (330)
.....+.+.|++|+|||+|+.++.+.....
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 445579999999999999999988765543
No 378
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.46 E-value=0.0099 Score=47.45 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|.++|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999754
No 379
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.46 E-value=0.011 Score=47.72 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|+++|.+|+||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999754
No 380
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.44 E-value=0.0095 Score=54.04 Aligned_cols=34 Identities=24% Similarity=0.076 Sum_probs=26.0
Q ss_pred cceeEEEEEc-CCCCCHHHHHHHHHHHHHhcCccc
Q 020176 63 KLHVNVGTIG-HVDHGKTTLTAAITKVLAEEGKAK 96 (330)
Q Consensus 63 ~~~~~I~v~G-~~~~GKSTLi~~L~~~~~~~g~~~ 96 (330)
.+...|+|++ ..|+||||+.-.|.......|...
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rV 175 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKV 175 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCE
Confidence 3446778885 889999999999987776666543
No 381
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.43 E-value=0.0065 Score=52.30 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
.++|+|+.|+|||||++.|.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998654
No 382
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.43 E-value=0.043 Score=45.82 Aligned_cols=33 Identities=15% Similarity=-0.030 Sum_probs=27.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcCccc
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAK 96 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~ 96 (330)
...+|.+.|.+|+||||++-.+.......|...
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V 37 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRV 37 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCE
Confidence 357899999999999999988888777777654
No 383
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.43 E-value=0.0081 Score=50.05 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|++|+|||||++.|++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
No 384
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.41 E-value=0.011 Score=48.58 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
...|+|+|.+|+|||||++.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999853
No 385
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.40 E-value=0.0042 Score=54.75 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|++|+|||||++.|.+.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 7899999999999999999854
No 386
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=95.39 E-value=0.47 Score=40.24 Aligned_cols=127 Identities=18% Similarity=0.155 Sum_probs=71.3
Q ss_pred eEEEEEcC-CCCCHHHHHHHHHHHHHhcCccceeec-----c---ccCCChhhhhcCceEEeEEEEe-------------
Q 020176 66 VNVGTIGH-VDHGKTTLTAAITKVLAEEGKAKAIAF-----D---EIDKAPEEKKRGITIATAHVEY------------- 123 (330)
Q Consensus 66 ~~I~v~G~-~~~GKSTLi~~L~~~~~~~g~~~~~~~-----~---~~~~~~~e~~~g~t~~~~~~~~------------- 123 (330)
..|.|.|. +++|||++.-.|+....+.|....... . ..|........+.......+.+
T Consensus 27 ~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~g~~~~~~~~~~~~p~sP~~aa~~~ 106 (251)
T 3fgn_A 27 TILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLAGVTQLAGLARYPQPMAPAAAAEHA 106 (251)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHHHHHHHHHCCCEEEEEEECSSSSCHHHHHHHT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHHHHHHHHcCCCCCCCCeeECCCCChHHHHHHc
Confidence 46778886 499999999999988877775432211 0 0111111111222211111111
Q ss_pred --------------e--eCCeeEEEEeCCCch-----hh-HHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCC
Q 020176 124 --------------E--TAKRHYAHVDCPGHA-----DY-VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGV 181 (330)
Q Consensus 124 --------------~--~~~~~i~iiDtPG~~-----~~-~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~ 181 (330)
. ....++.+||.||-. +. .....-......-+|+|+|+..+....+...+..+...++
T Consensus 107 ~~~~~~~~~i~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~ 186 (251)
T 3fgn_A 107 GMALPARDQIVRLIADLDRPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQV 186 (251)
T ss_dssp TCCCCCHHHHHHHHHTTCCTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCC
Confidence 0 124679999998721 11 0111111112345889999987666666666677777788
Q ss_pred CeEEEEEeecc
Q 020176 182 PSLVCFLNKVD 192 (330)
Q Consensus 182 p~iivviNK~D 192 (330)
+-.=+|+||+.
T Consensus 187 ~i~GvIlN~v~ 197 (251)
T 3fgn_A 187 SCAGLVIGSWP 197 (251)
T ss_dssp CEEEEEEEEEC
T ss_pred CEEEEEEECCC
Confidence 85567899985
No 387
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.37 E-value=0.01 Score=49.14 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~ 87 (330)
+|+|+|.+||||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 388
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.34 E-value=0.013 Score=48.17 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=23.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~g 93 (330)
...|+|+|.+||||||+.+.|.......+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35799999999999999999987654433
No 389
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.33 E-value=0.016 Score=52.58 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=24.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHhc
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAEE 92 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~~ 92 (330)
.-.|+|+|++|+|||||++.|.+.....
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 3479999999999999999999876554
No 390
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.32 E-value=0.008 Score=54.17 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|++|||||||++.|.+.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 5899999999999999999854
No 391
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.30 E-value=0.012 Score=47.28 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.+|+++|.+|+||||+...|...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 392
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.29 E-value=0.0075 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999853
No 393
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.26 E-value=0.015 Score=47.85 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHh
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLAE 91 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~~ 91 (330)
...|+|.|.+||||||+.+.|......
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 357999999999999999999865443
No 394
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.25 E-value=0.0085 Score=53.92 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++++|++|+|||||++.|.+.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5799999999999999999864
No 395
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.24 E-value=0.0083 Score=54.22 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
..+++|+|++|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998653
No 396
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.23 E-value=0.0086 Score=54.09 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
-.++|+|++|+|||||++.|.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 379999999999999999998643
No 397
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.21 E-value=0.012 Score=51.83 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=22.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLA 90 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~ 90 (330)
+...|+|+|++|||||||++.|.+...
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345799999999999999999987543
No 398
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.21 E-value=0.016 Score=46.79 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEG 93 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g 93 (330)
.|++.|.+||||||+.+.|.......|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKG 28 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 589999999999999999986544333
No 399
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.21 E-value=0.018 Score=46.08 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g 93 (330)
..|+++|.+|+||||+.+.|.+.....|
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g 33 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHG 33 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 4789999999999999999987554333
No 400
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.21 E-value=0.013 Score=47.27 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.+|+++|.+|+||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999753
No 401
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.20 E-value=0.015 Score=47.18 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEG 93 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g 93 (330)
.|++.|.+||||||+++.|.......|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999999999987654434
No 402
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.18 E-value=0.014 Score=47.59 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~ 87 (330)
...|+|+|.+||||||+.+.|..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 403
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.16 E-value=0.0097 Score=53.50 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++++|++|+|||||++.|.+.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999854
No 404
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.16 E-value=0.016 Score=49.20 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=21.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
+..+|+|+|.+||||||+...|...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
No 405
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.11 E-value=0.017 Score=47.25 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
....|+|+|.+|+||||+.+.|...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999754
No 406
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.11 E-value=0.012 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~ 87 (330)
..|+|+|++||||||+++.|..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999973
No 407
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.10 E-value=0.01 Score=53.44 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++++|++|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5799999999999999999864
No 408
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.10 E-value=0.01 Score=53.82 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++++|++|+|||||++.|.+.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 5799999999999999999864
No 409
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.09 E-value=0.026 Score=49.86 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEG 93 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g 93 (330)
-+.|.|.+|+|||||+..+.......|
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g 96 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDND 96 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 577999999999999999886555444
No 410
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.09 E-value=0.015 Score=47.10 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|+++|.+||||||+.+.|...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 411
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.07 E-value=0.015 Score=48.26 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|+++|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999753
No 412
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.07 E-value=0.014 Score=47.61 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|+|+|.+||||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999854
No 413
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.06 E-value=0.0084 Score=53.44 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
.++|+|++|+|||||++.|.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998653
No 414
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.06 E-value=0.013 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.247 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..++|+|..|||||||++.|.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 46789999999999999999865
No 415
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.05 E-value=0.011 Score=53.37 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++++|++|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5799999999999999999864
No 416
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.04 E-value=0.014 Score=53.80 Aligned_cols=26 Identities=27% Similarity=0.160 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLA 90 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~ 90 (330)
.-.|+|+|++|+|||||+++|++...
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 34689999999999999999997643
No 417
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.02 E-value=0.1 Score=48.33 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=24.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccce
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKA 97 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~ 97 (330)
-+.|.|.+|+|||||+-.+.......|....
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl 229 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVN 229 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCEEE
Confidence 5789999999999999998866555554333
No 418
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.01 E-value=0.014 Score=46.73 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|+++|.+|+||||+...|...
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999754
No 419
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.01 E-value=0.017 Score=45.51 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
+|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 420
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.00 E-value=0.0058 Score=50.41 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEE 92 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~ 92 (330)
.|+|.|.+||||||+++.|.......
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999998765433
No 421
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.00 E-value=0.011 Score=53.44 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++++|++|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 5799999999999999999854
No 422
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.98 E-value=0.02 Score=46.78 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|+|+|.+||||||+.+.|...
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999743
No 423
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.98 E-value=0.016 Score=47.91 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
+|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 424
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=94.97 E-value=0.073 Score=44.59 Aligned_cols=67 Identities=16% Similarity=0.026 Sum_probs=43.1
Q ss_pred CCeeEEEEeCCCch-----h--hHHHHHHhhhccCeEEEEEeCCCCCchhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 126 AKRHYAHVDCPGHA-----D--YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 126 ~~~~i~iiDtPG~~-----~--~~~~~~~~~~~~d~~l~vvda~~~~~~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
....+.+||+||.- + ....... ....-+|+|+++..+....+...+..+...+++-.=+|+|+++-.
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~--~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~ 182 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIK--ALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN 182 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHH--HHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred ccCCEEEEECCCccccccccchhHHHHHH--HcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence 35679999998721 1 1111111 112348889999876666666666777788888555789999753
No 425
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.97 E-value=0.012 Score=53.33 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++++|++|+|||||++.|.+.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5799999999999999999864
No 426
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.96 E-value=0.015 Score=46.40 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
+|+|+|.+|+||||+...|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 427
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.95 E-value=0.059 Score=47.04 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=22.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLA 90 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~ 90 (330)
+...+.+.|++|+|||+|+..|.+...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 345799999999999999999987543
No 428
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.95 E-value=0.018 Score=47.87 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEG 93 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g 93 (330)
.++|+|++|+|||||+..|.......+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~ 51 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDG 51 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 578999999999999999986654433
No 429
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.81 E-value=0.011 Score=56.04 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
+++|+|++|||||||+++|++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999853
No 430
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.80 E-value=0.021 Score=49.75 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
....|+++|++||||||+...|...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999754
No 431
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.79 E-value=0.017 Score=46.91 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|+++|.+|+||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 432
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.76 E-value=0.026 Score=48.32 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~~g 93 (330)
..|+++|.+||||||+.+.|.......|
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g 32 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNN 32 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 4789999999999999999987654444
No 433
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.75 E-value=0.021 Score=47.14 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
+|+++|+|||||+|....|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999743
No 434
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.75 E-value=0.019 Score=47.51 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~ 87 (330)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 435
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.72 E-value=0.11 Score=42.97 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLA 90 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~ 90 (330)
.+.|.|++|+|||||+..+.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999986544
No 436
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.71 E-value=0.051 Score=47.95 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.+.|.|++|+|||+|..++...
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4689999999999999998754
No 437
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.71 E-value=0.019 Score=47.90 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~ 87 (330)
..|+|+|.+||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 438
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.68 E-value=0.015 Score=52.98 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
.++|+|++|+|||||++.|.+..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999998643
No 439
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.66 E-value=0.0098 Score=53.34 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++++|++|+|||||++.|.+.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5899999999999999999854
No 440
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.66 E-value=0.024 Score=48.37 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.|+|+|++|+|||||...|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5789999999999999999754
No 441
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.65 E-value=0.022 Score=46.49 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=22.7
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHHH
Q 020176 62 TKLHVNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 62 ~~~~~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
...+..|+++|.+||||||+.+.|...
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHh
Confidence 345689999999999999999998643
No 442
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.63 E-value=0.018 Score=46.15 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
..+|+|+.|+|||||+.+|....
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999997543
No 443
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=94.63 E-value=0.32 Score=44.16 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=25.6
Q ss_pred CeeEEEEeCCCchhhHHHHHHhhhccCeEEEEEeCCC
Q 020176 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD 163 (330)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~l~vvda~~ 163 (330)
.+.++|||||...... ....+..+|.+|+++.+..
T Consensus 244 ~yD~ViiD~pp~~~~~--~~~~l~~aD~vliv~~p~~ 278 (398)
T 3ez2_A 244 DYDFILVDSGPHLDAF--LKNALASANILFTPLPPAT 278 (398)
T ss_dssp TCSEEEEEECSCCSHH--HHHHHHHCSEEEEEECCSH
T ss_pred cCCEEEEeCCCCccHH--HHHHHHHCCEEEEEecCch
Confidence 4689999998755432 3445668999999998753
No 444
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=94.61 E-value=0.15 Score=46.01 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccce
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKA 97 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~ 97 (330)
.+.+.|..|+||||+.-.|.......|+...
T Consensus 4 i~~~~gkGG~GKTt~a~~la~~la~~g~~vl 34 (374)
T 3igf_A 4 ILTFLGKSGVARTKIAIAAAKLLASQGKRVL 34 (374)
T ss_dssp EEEEECSBHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCeE
Confidence 4567899999999999999877776666443
No 445
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.56 E-value=0.024 Score=47.70 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
...|+|.|++|+||||+.+.|.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999743
No 446
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.56 E-value=0.031 Score=44.93 Aligned_cols=23 Identities=30% Similarity=0.218 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|+++|.+||||||+.+.|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 447
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.55 E-value=0.025 Score=47.19 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 448
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.50 E-value=0.021 Score=47.52 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|+|+|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999754
No 449
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.49 E-value=0.023 Score=49.17 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
-++++|++|+|||||+++|.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999854
No 450
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.49 E-value=0.028 Score=44.35 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
+|+|.|.+||||||+...|...
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 451
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.018 Score=53.70 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLA 90 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~ 90 (330)
-.++|+|+.|+|||||++.|.+...
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CEEEEECCCCCCHHHHHHHHhCccc
Confidence 4789999999999999999987543
No 452
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.42 E-value=0.028 Score=49.01 Aligned_cols=26 Identities=12% Similarity=0.046 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEE 92 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~ 92 (330)
-++|+|++|+|||||+..|.......
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999998776554
No 453
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.42 E-value=0.024 Score=48.21 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.+.|+|.|.+||||||+.+.|...
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 454
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.41 E-value=0.021 Score=48.61 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHHH
Q 020176 63 KLHVNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 63 ~~~~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.....|+++|.+||||||+...|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 33467999999999999999999754
No 455
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.40 E-value=0.038 Score=45.99 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
...|.|+|+|||||+|....|...
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 345788999999999999999743
No 456
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.40 E-value=0.028 Score=46.61 Aligned_cols=23 Identities=35% Similarity=0.261 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.+|+|+|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 457
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.40 E-value=0.0097 Score=53.52 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++++|++|+|||||++.|.+.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999854
No 458
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.39 E-value=0.037 Score=45.56 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKVLA 90 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~~~ 90 (330)
...|+++|.+|+||||+.+.|.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35789999999999999999987654
No 459
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.37 E-value=0.016 Score=46.38 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=16.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|++.|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999998743
No 460
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.36 E-value=0.16 Score=40.83 Aligned_cols=28 Identities=21% Similarity=0.128 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCc
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGK 94 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~ 94 (330)
-+.+.|++|+||||++-.+.......|.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~ 32 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKK 32 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 4679999999999998777665554454
No 461
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.33 E-value=0.029 Score=44.36 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.|+|+|.+||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 462
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.32 E-value=0.026 Score=47.98 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++++|++|+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999854
No 463
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.32 E-value=0.024 Score=50.76 Aligned_cols=22 Identities=27% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
+++|+|+.|+|||||++.|.+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999864
No 464
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.31 E-value=0.019 Score=48.15 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
...|+|.|..|||||||++.|.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 357899999999999999998754
No 465
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.29 E-value=0.035 Score=46.60 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=23.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHh
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAE 91 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~ 91 (330)
....|++.|.+|+||||+++.|......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3457899999999999999999876544
No 466
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.21 E-value=0.032 Score=44.74 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.|+|+|.+||||||+...|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 467
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.20 E-value=0.18 Score=47.39 Aligned_cols=25 Identities=4% Similarity=-0.145 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAE 91 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~ 91 (330)
-+.|.|.+|+|||||+-.+......
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred EEEEeecCCCCchHHHHHHHHHHHH
Confidence 4679999999999999988765544
No 468
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.17 E-value=0.15 Score=44.98 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
+...|.+.|++|+|||+|+.++.+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3457999999999999999999854
No 469
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.15 E-value=0.024 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
.++++|+.|+|||||++.|.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998643
No 470
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.14 E-value=0.029 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~ 87 (330)
.+|+|+|.+|+||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 471
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.11 E-value=0.036 Score=46.47 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.+|+|+|.+|+||||+...|...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 472
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.08 E-value=0.028 Score=43.80 Aligned_cols=22 Identities=36% Similarity=0.329 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHH
Q 020176 68 VGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 68 I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
.+|+|+.|+||||++.+|.-..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999987543
No 473
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.07 E-value=0.3 Score=43.08 Aligned_cols=25 Identities=28% Similarity=0.178 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
....|.+.|++|+|||+|+.++.+.
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3456899999999999999999643
No 474
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.05 E-value=0.03 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
.++|+|+.|+|||||++.|.+..
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999998754
No 475
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.01 E-value=0.044 Score=44.66 Aligned_cols=26 Identities=38% Similarity=0.342 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHh
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLAE 91 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~~ 91 (330)
..+.+.|++|+|||+|+.++......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999866543
No 476
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.01 E-value=0.26 Score=44.04 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=22.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLA 90 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~ 90 (330)
....+.|.|++|+|||||+..+.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999986543
No 477
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.00 E-value=0.034 Score=48.23 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAIT 86 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~ 86 (330)
...|+|+|.+||||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999987
No 478
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.90 E-value=0.036 Score=49.36 Aligned_cols=24 Identities=38% Similarity=0.303 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
..++++|++|+|||||++.+.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 358999999999999999998754
No 479
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.88 E-value=0.035 Score=47.91 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++++|++|+|||||+++|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999999864
No 480
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.80 E-value=0.03 Score=53.90 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVL 89 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~ 89 (330)
.++++|++|+|||||++.|.+..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998643
No 481
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.76 E-value=0.036 Score=51.35 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
+++|+|++|+|||||++.|.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7899999999999999999864
No 482
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.75 E-value=0.025 Score=53.84 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
-.++++|+.|+|||||++.|.+.
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 36899999999999999999864
No 483
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.66 E-value=0.058 Score=44.83 Aligned_cols=30 Identities=23% Similarity=0.095 Sum_probs=24.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~~~g 93 (330)
....+.+.|++|+|||||+..+.......+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~ 80 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELE 80 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 345799999999999999999987665443
No 484
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.66 E-value=0.028 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++++|++|+|||||++.|.+.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 7899999999999999999864
No 485
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.65 E-value=0.049 Score=43.23 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=22.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKVLA 90 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~~~ 90 (330)
....+.+.|++|+|||+|+..+.....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999986543
No 486
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.64 E-value=0.034 Score=53.65 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++|+|+.|+|||||++.|.+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999864
No 487
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.62 E-value=0.059 Score=51.06 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKVLA 90 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~~~ 90 (330)
..|+++|.+|+||||+...|.....
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999986543
No 488
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.56 E-value=0.052 Score=45.51 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHHH
Q 020176 64 LHVNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 64 ~~~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.+.+++++|.+||||||+...|...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998753
No 489
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.55 E-value=0.39 Score=38.91 Aligned_cols=31 Identities=10% Similarity=-0.040 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCccce
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKA 97 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~~g~~~~ 97 (330)
-..+.|+.|+||||.+-.+.......|....
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~ 40 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQ 40 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 5678999999999998888776655555443
No 490
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.54 E-value=0.041 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~ 87 (330)
.++++|++|+|||||+..|..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 491
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.53 E-value=1.4 Score=40.63 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Q 020176 67 NVGTIGHVDHGKTTLTAAITKVLAE 91 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~~~~ 91 (330)
-++|.|++|+|||||+..+......
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999876554
No 492
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.50 E-value=0.045 Score=49.56 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
...++++|++|+|||||++.|.+.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347899999999999999999864
No 493
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.50 E-value=0.039 Score=49.84 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Q 020176 68 VGTIGHVDHGKTTLTAAITKVLA 90 (330)
Q Consensus 68 I~v~G~~~~GKSTLi~~L~~~~~ 90 (330)
.+|+|+.|+|||||+++++-...
T Consensus 26 ~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 56999999999999999985543
No 494
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.47 E-value=0.061 Score=47.20 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|+|+|++|+|||||...|...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 46889999999999999999854
No 495
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.44 E-value=0.057 Score=44.02 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.|+|.|.+|+||||+.+.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999753
No 496
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.44 E-value=0.056 Score=45.90 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 020176 66 VNVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 66 ~~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
..|.+.|++|+|||||+.++.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999854
No 497
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.40 E-value=0.043 Score=45.93 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~ 87 (330)
.++|+|++|+|||||+..|+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 688999999999999999985
No 498
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.37 E-value=0.059 Score=45.23 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHH
Q 020176 65 HVNVGTIGHVDHGKTTLTAAITK 87 (330)
Q Consensus 65 ~~~I~v~G~~~~GKSTLi~~L~~ 87 (330)
...|+|+|.+|+||||+.+.|.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 499
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.32 E-value=0.18 Score=47.71 Aligned_cols=126 Identities=9% Similarity=0.083 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHH--HHHHHHhcCccceeeccccCCChhhhhcCceEE---------eEEEEeeeCCeeEEEEeCC
Q 020176 68 VGTIGHVDHGKTTLTAA--ITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIA---------TAHVEYETAKRHYAHVDCP 136 (330)
Q Consensus 68 I~v~G~~~~GKSTLi~~--L~~~~~~~g~~~~~~~~~~~~~~~e~~~g~t~~---------~~~~~~~~~~~~i~iiDtP 136 (330)
++|+|++|+|||||++. +.+.....................+..+.+... ..............+++.-
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~ 121 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGF 121 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSCCSSH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhhhccc
Q ss_pred CchhhHHHHHHhhhccCeEEEEEeCCCCCc----------hhhHHHHHHHHHcCCCeEEEEEeeccCc
Q 020176 137 GHADYVKNMITGAAQMDGGILVVSAPDGPM----------PQTKEHILLARQVGVPSLVCFLNKVDLV 194 (330)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~l~vvda~~~~~----------~~~~~~l~~~~~~~~p~iivviNK~D~~ 194 (330)
|..++.......+...+.=++++|.-.... .+..+.+..+...|+. +|++-...+..
T Consensus 122 ~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~t-vl~itH~~~~~ 188 (525)
T 1tf7_A 122 DLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGAT-TVMTTERIEEY 188 (525)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCE-EEEEEECSSSS
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCE-EEEEecCCCCc
No 500
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.31 E-value=0.028 Score=54.27 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 020176 67 NVGTIGHVDHGKTTLTAAITKV 88 (330)
Q Consensus 67 ~I~v~G~~~~GKSTLi~~L~~~ 88 (330)
.++++|++|+|||||++.|.+.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999854
Done!