Query 020177
Match_columns 330
No_of_seqs 277 out of 1729
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 12:57:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g33_B CCND3 protein; Ser/Thr 100.0 4.5E-50 1.5E-54 377.6 23.7 255 6-275 12-270 (306)
2 2w96_A G1/S-specific cyclin-D1 100.0 1.2E-47 4E-52 355.5 24.1 250 11-275 4-260 (271)
3 2f2c_A Cyclin homolog, V-cycli 100.0 9.8E-47 3.3E-51 346.1 25.1 228 40-273 20-249 (254)
4 1g3n_C V-cyclin; cyclin-depend 100.0 2E-46 7E-51 344.6 23.4 232 40-277 19-253 (257)
5 1f5q_B Gamma herpesvirus cycli 100.0 6.1E-47 2.1E-51 346.8 15.4 223 39-272 20-242 (252)
6 2cch_B Cyclin A2, cyclin-A; co 100.0 2.6E-45 8.9E-50 337.8 23.5 227 37-275 4-231 (260)
7 2b9r_A Human cyclin B1; cell c 100.0 7.5E-44 2.6E-48 329.6 20.1 221 39-273 6-226 (269)
8 1w98_B Cyclin E, G1/S-specific 100.0 2.4E-43 8.1E-48 328.5 23.2 218 39-272 17-242 (283)
9 2i53_A Cyclin K; cell cycle, t 100.0 5.3E-36 1.8E-40 275.0 19.8 203 68-274 35-253 (258)
10 2ivx_A Cyclin-T2; transcriptio 100.0 2.8E-34 9.4E-39 263.6 23.4 194 70-273 27-241 (257)
11 3rgf_B Cyclin-C; protein kinas 100.0 7.5E-34 2.6E-38 264.6 21.2 190 71-272 40-242 (285)
12 1zp2_A RNA polymerase II holoe 100.0 1.8E-33 6.3E-38 255.0 18.7 188 74-273 28-221 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 2.3E-33 7.9E-38 268.9 15.7 197 69-274 33-249 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 6.6E-31 2.3E-35 248.7 18.9 244 71-328 54-321 (323)
15 1c9b_A General transcription f 99.9 5.6E-26 1.9E-30 201.8 19.8 186 72-271 3-188 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 1.3E-21 4.3E-26 172.7 20.4 186 72-271 7-194 (200)
17 3k7a_M Transcription initiatio 99.7 3.3E-18 1.1E-22 163.0 8.0 183 74-270 126-320 (345)
18 4bbr_M Transcription initiatio 99.4 1.1E-12 3.8E-17 124.7 9.3 182 75-270 127-320 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.4 2.2E-06 7.4E-11 78.7 11.4 107 77-188 77-184 (293)
20 1ais_B TFB TFIIB, protein (tra 96.1 0.029 1E-06 48.2 9.8 89 79-174 110-198 (200)
21 1c9b_A General transcription f 95.0 0.19 6.6E-06 43.2 10.8 87 178-271 8-94 (207)
22 4bbr_M Transcription initiatio 90.6 0.86 2.9E-05 42.6 8.7 89 176-271 127-215 (345)
23 3k7a_M Transcription initiatio 89.2 0.28 9.6E-06 45.9 4.1 87 178-271 129-215 (345)
24 1zp2_A RNA polymerase II holoe 86.9 3.5 0.00012 35.9 9.5 87 178-271 31-126 (235)
25 2i53_A Cyclin K; cell cycle, t 85.0 2.7 9.1E-05 37.1 7.9 87 79-170 153-250 (258)
26 3h4c_A Transcription factor TF 83.9 20 0.00069 30.9 14.1 147 77-234 15-169 (260)
27 3rgf_B Cyclin-C; protein kinas 81.8 2.7 9.2E-05 38.0 6.6 82 79-169 159-240 (285)
28 2ivx_A Cyclin-T2; transcriptio 81.6 5.9 0.0002 34.8 8.8 86 79-169 148-238 (257)
29 2pk2_A Cyclin-T1, protein TAT; 79.0 4.9 0.00017 37.6 7.6 86 80-169 156-245 (358)
30 2f2c_A Cyclin homolog, V-cycli 72.5 15 0.00052 32.1 8.7 85 79-169 154-246 (254)
31 1jkw_A Cyclin H; cell cycle, c 71.5 29 0.00098 31.7 10.6 84 180-270 62-154 (323)
32 1g3n_C V-cyclin; cyclin-depend 71.3 18 0.0006 31.8 8.8 86 78-169 152-246 (257)
33 2w96_A G1/S-specific cyclin-D1 68.9 18 0.00063 31.9 8.5 67 203-271 81-149 (271)
34 2b9r_A Human cyclin B1; cell c 68.5 19 0.00067 31.8 8.5 86 180-271 43-130 (269)
35 3g33_B CCND3 protein; Ser/Thr 66.3 27 0.00091 31.6 9.2 67 203-271 95-163 (306)
36 2cch_B Cyclin A2, cyclin-A; co 61.7 16 0.00056 32.0 6.6 84 79-169 141-226 (260)
37 1w98_B Cyclin E, G1/S-specific 48.0 61 0.0021 28.8 8.1 66 203-270 74-142 (283)
38 1f5q_B Gamma herpesvirus cycli 40.2 1E+02 0.0035 26.9 8.2 66 203-270 73-140 (252)
39 1q1s_A Large T antigen; import 25.8 27 0.00092 19.5 1.1 13 304-316 11-23 (26)
40 2wh0_Q Pkcev3, protein kinase 25.4 53 0.0018 18.5 2.3 18 155-172 12-29 (31)
41 3m03_A ORC6, origin recognitio 21.1 1.5E+02 0.005 22.1 4.8 45 225-272 49-93 (95)
No 1
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-50 Score=377.56 Aligned_cols=255 Identities=23% Similarity=0.348 Sum_probs=206.8
Q ss_pred cCcccccccccccc--cccCCCCCCCCCCCCCCCCChHHHHHHHHHHHhccCCCCCccccccCCCCCHHHHHHHHHHHHH
Q 020177 6 SGSFPDLLCGEDSG--IFAGESSPACSSSDLESSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILK 83 (330)
Q Consensus 6 ~~~~~~l~c~ed~~--~~~~~~~~~~~~~~~~~~~~~~e~l~~ll~~E~~~~p~~~yl~~~q~~~i~~~~R~~lvdWi~~ 83 (330)
|..| +|+|+|+.. ...+.+ |.-. +++|++.+|+++|.++.|+++|+... ++++++.+|..+|+||++
T Consensus 12 ~~~~-~l~~~e~~~~~~~a~~d-p~l~--------~~~~i~~~l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~e 80 (306)
T 3g33_B 12 GGSM-ELLCCEGTRHAPRAGPD-PRLL--------GDQRVLQSLLRLEERYVPRASYFQCV-QREIKPHMRKMLAYWMLE 80 (306)
T ss_dssp -----------------------------------CHHHHHHHHHHHGGGGSCSSCCTTTS-TTTCCHHHHHHHHHHHHH
T ss_pred CCCc-ceeeecccccccccCCC-Cccc--------chHHHHHHHHHHHHHhCCCcHHHhhc-CccCCHHHHHHHHHHHHH
Confidence 3445 699999443 555666 4322 78899999999999999999999865 467999999999999999
Q ss_pred HHHHhCCchhHHHHHHHHHHHHhcCCCcCCCCCCchhHHHHHHhhhhhhhccccCCchhhhhHhcccccccHHHHHHHHH
Q 020177 84 VQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMEL 163 (330)
Q Consensus 84 v~~~~~l~~~t~~lAv~~~DRfls~~~i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~~~~~~~~~~~I~~mE~ 163 (330)
|+.+|+++++|+++||+|||||+++..+.+. ++||+|+||||||+|+||..+|.+.++... +++.|++++|++||+
T Consensus 81 v~~~~~l~~~t~~lAv~~lDRfls~~~v~~~---~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~-~~~~~~~~~i~~mE~ 156 (306)
T 3g33_B 81 VCEEQRCEEEVFPLAMNYLDRYLSCVPTRKA---QLQLLGAVCMLLASKLRETTPLTIEKLCIY-TDHAVSPRQLRDWEV 156 (306)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHHCCCCGG---GHHHHHHHHHHHHHHHHCSSCCCTTHHHHH-TTTSSCHHHHHHHHH
T ss_pred HHHHhCCcHhHHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHHHHHhccCCCCCHHHHHHH-hccCccHHHHHHHHH
Confidence 9999999999999999999999999998776 899999999999999999999999999655 778999999999999
Q ss_pred HHHHHcCccccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhchhcccCccHHHHHHHHHHHHHhhCCCCCCCC
Q 020177 164 LVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEIPNLSLVN 243 (330)
Q Consensus 164 ~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~a~~ll~~~l~d~~~l~~~PS~iAaAai~~A~~~~~~~~~~~ 243 (330)
.||++|+|+++.|||++||.+|++.++........+...++++++.++.++.|++|+||.||||||++|+..++..+.|.
T Consensus 157 ~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~ 236 (306)
T 3g33_B 157 LVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSG 236 (306)
T ss_dssp HHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCH
T ss_pred HHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999999988877666666777899999999999999999999999999999999887543331
Q ss_pred --ccccchhccCCCHHHHHHHHHHHHHHHhhcCC
Q 020177 244 --PEHAESWCDGLSKEKIISCYRLMQRLVLNDSR 275 (330)
Q Consensus 244 --~~~~l~~~~~~~~e~l~~c~~~l~~l~~~~~~ 275 (330)
....+..++||++++|.+|++.|.+++.+..+
T Consensus 237 ~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~l~ 270 (306)
T 3g33_B 237 DELTELLAGITGTEVDCLRACQEQIEAALRESLR 270 (306)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC--
T ss_pred hhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 12345667899999999999999999987443
No 2
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=1.2e-47 Score=355.46 Aligned_cols=250 Identities=23% Similarity=0.337 Sum_probs=209.2
Q ss_pred ccccccccccc-cCCCCCCCCCCCCCCCCChHHHHHHHHHHHhccCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhC
Q 020177 11 DLLCGEDSGIF-AGESSPACSSSDLESSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYN 89 (330)
Q Consensus 11 ~l~c~ed~~~~-~~~~~~~~~~~~~~~~~~~~e~l~~ll~~E~~~~p~~~yl~~~q~~~i~~~~R~~lvdWi~~v~~~~~ 89 (330)
+|+|+|+..+. .+++ |.. .++|++.+|+++|.++.|+++|+...| +++++.+|..+++||++++.+|+
T Consensus 4 ~l~c~e~~~~~~~~~d-p~~---------~~~~i~~~l~~~E~~~~p~~~y~~~~q-~~i~~~~R~~lv~wl~~v~~~~~ 72 (271)
T 2w96_A 4 QLLCCEVETIRRAYPD-ANL---------LNDRVLRAMLKAEETCAPSVSYFKCVQ-KEVLPSMRKIVATWMLEVCEEQK 72 (271)
T ss_dssp --CCCSSSCC---------------------CHHHHHHHHHHHHTCCCTTHHHHTC-SSCCHHHHHHHHHHHHHHHHHTT
T ss_pred ceeeCCCCccccCCCC-Ccc---------cHHHHHHHHHHHHHHhCCCchHHHhcC-CcCCHHHHHHHHHHHHHHHHHHC
Confidence 59999976643 3344 422 256999999999999999999987654 68999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHhcCCCcCCCCCCchhHHHHHHhhhhhhhccccCCchhhhhHhcccccccHHHHHHHHHHHHHHc
Q 020177 90 FLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVL 169 (330)
Q Consensus 90 l~~~t~~lAv~~~DRfls~~~i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~~~~~~~~~~~I~~mE~~IL~~L 169 (330)
+.++|+++||+|||||+++..+++. ++||+|+||||||+|+||..||.+.++... +++.|++++|.+||+.||++|
T Consensus 73 l~~~tl~lAv~~lDRfls~~~v~~~---~lqlv~~acL~iAsK~EE~~p~~~~~~~~~-~~~~~~~~eI~~mE~~IL~~L 148 (271)
T 2w96_A 73 CEEEVFPLAMNYLDRFLSLEPVKKS---RLQLLGATCMFVASKMKETIPLTAEKLCIY-TDNSIRPEELLQMELLLVNKL 148 (271)
T ss_dssp CCTTHHHHHHHHHHHHHTTSCCCTT---THHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TTTSSCHHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHhCCcCCcCHH---HHHHHHHHHHHHHHHHhhcCCCCHHHHHHH-hcCCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999887 799999999999999999999999999654 678899999999999999999
Q ss_pred CccccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhchhcccCccHHHHHHHHHHHHHhhCC----CCCCCCc-
Q 020177 170 DWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEIP----NLSLVNP- 244 (330)
Q Consensus 170 ~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~a~~ll~~~l~d~~~l~~~PS~iAaAai~~A~~~~~----~~~~~~~- 244 (330)
+|++++|||++|+.+|++.++........+...|+++++.++.|+.|++|+||.||||||++|+..++ ..+.|..
T Consensus 149 ~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~ 228 (271)
T 2w96_A 149 KWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYR 228 (271)
T ss_dssp TTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTT
T ss_pred CCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHH
Confidence 99999999999999999988776544444556789999999999999999999999999999987653 1122211
Q ss_pred -cccchhccCCCHHHHHHHHHHHHHHHhhcCC
Q 020177 245 -EHAESWCDGLSKEKIISCYRLMQRLVLNDSR 275 (330)
Q Consensus 245 -~~~l~~~~~~~~e~l~~c~~~l~~l~~~~~~ 275 (330)
...+..++|+++++|.+|++.|.+++..+.+
T Consensus 229 ~~~~l~~~~~v~~~~l~~c~~~i~~l~~~~~~ 260 (271)
T 2w96_A 229 LTRFLSRVIKCDPDCLRACQEQIEALLESSLR 260 (271)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 2346667999999999999999999976443
No 3
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=9.8e-47 Score=346.14 Aligned_cols=228 Identities=14% Similarity=0.149 Sum_probs=200.6
Q ss_pred hHHHHHHHHHHHhccCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCCcCCCCCCch
Q 020177 40 IEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPW 119 (330)
Q Consensus 40 ~~e~l~~ll~~E~~~~p~~~yl~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~i~~~~~~~l 119 (330)
++|++. |+++|.++.|+++|+... ++++++.+|..+|+||++|+.+|++.++|+|+||+|+|||+++..+++. ++
T Consensus 20 ~~~i~~-l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~---~l 94 (254)
T 2f2c_A 20 DPRVLN-NLKLRELLLPKFTSLWEI-QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKK---TL 94 (254)
T ss_dssp CHHHHH-HHHHHHTTSCCCSSTTTT-CSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTT---TH
T ss_pred HHHHHH-HHHHHHhhCCCchhhhhc-CccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHH---Hc
Confidence 388999 999999999999999743 5789999999999999999999999999999999999999999999887 79
Q ss_pred hHHHHHHhhhhhhhccccCCchhhhhHhcccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHhcCCCCChHHHH
Q 020177 120 QLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFL 199 (330)
Q Consensus 120 qLla~aCL~LAsK~eE~~~p~l~~l~~~~~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~ 199 (330)
||+|+||||||+|+||..+|.+.++.. .+++.|++++|.+||+.||++|+|+++.|||++|+.+|++.++.+......+
T Consensus 95 qLv~~acl~iA~K~eE~~~p~~~d~~~-~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~ 173 (254)
T 2f2c_A 95 QKIGAACVLIGSKIRTVKPMTVSKLTY-LSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQL 173 (254)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHST-TC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHH-HhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHH
Confidence 999999999999999999999999964 4778899999999999999999999999999999999999888766555556
Q ss_pred HHHHHHHHHHhhchhcccCccHHHHHHHHHHHHHhhCCCCCC-CCc-cccchhccCCCHHHHHHHHHHHHHHHhhc
Q 020177 200 ISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEIPNLSL-VNP-EHAESWCDGLSKEKIISCYRLMQRLVLND 273 (330)
Q Consensus 200 ~~~a~~ll~~~l~d~~~l~~~PS~iAaAai~~A~~~~~~~~~-~~~-~~~l~~~~~~~~e~l~~c~~~l~~l~~~~ 273 (330)
...|.++++.++.|+.|++|+||.|||||+++|++..+.-+. |.. ...+..++||++++|.+|++.|.+++.+.
T Consensus 174 ~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~~~ 249 (254)
T 2f2c_A 174 YEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFSLY 249 (254)
T ss_dssp HHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhC
Confidence 778999999999999999999999999999999987532111 110 34567789999999999999999998653
No 4
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2e-46 Score=344.57 Aligned_cols=232 Identities=19% Similarity=0.178 Sum_probs=204.7
Q ss_pred hHHHHHHHHHHHhccCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCCcCCCCCCch
Q 020177 40 IEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPW 119 (330)
Q Consensus 40 ~~e~l~~ll~~E~~~~p~~~yl~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~i~~~~~~~l 119 (330)
++|++ +|+++|.++.|+++|+... ++++++++|..+|+||++|+.+|++.++|+++||+|||||+++..+++. ++
T Consensus 19 ~~~i~-~l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~---~l 93 (257)
T 1g3n_C 19 DRIFY-NILEIEPRFLTSDSVFGTF-QQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKE---HF 93 (257)
T ss_dssp HHHHH-HHHHHGGGGCCCGGGHHHH-TSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHH---HH
T ss_pred HHHHH-HHHHHHHHhCCChhHHHhc-CccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHH---HH
Confidence 47888 9999999999999998643 5689999999999999999999999999999999999999999999887 79
Q ss_pred hHHHHHHhhhhhhhccccCCchhhhhHhcccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHhcCCCCChHHHH
Q 020177 120 QLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFL 199 (330)
Q Consensus 120 qLla~aCL~LAsK~eE~~~p~l~~l~~~~~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~ 199 (330)
||+|+||||||+|+||..+|.+.++... +++.|++++|.+||+.||++|+|+++.|||++|+.+|++.++.+......+
T Consensus 94 qLv~~acl~iA~K~eE~~~p~~~d~~~~-~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~ 172 (257)
T 1g3n_C 94 QKTGSACLLVASKLRSLTPISTSSLCYA-AADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFW 172 (257)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHH-TTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHH
T ss_pred HHHHHHHHHHHHHHccccCCCHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHH
Confidence 9999999999999999999999999654 677899999999999999999999999999999999999888766555566
Q ss_pred HHHHHHHHHHhhchhcccCccHHHHHHHHHHHHHhhCCCCCC---CCccccchhccCCCHHHHHHHHHHHHHHHhhcCCC
Q 020177 200 ISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEIPNLSL---VNPEHAESWCDGLSKEKIISCYRLMQRLVLNDSRR 276 (330)
Q Consensus 200 ~~~a~~ll~~~l~d~~~l~~~PS~iAaAai~~A~~~~~~~~~---~~~~~~l~~~~~~~~e~l~~c~~~l~~l~~~~~~~ 276 (330)
...|+++++.++.|+.|++|+||.|||||+++|+..++..+. ..+...+..++|+++++|.+|++.|.+++.+...+
T Consensus 173 ~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~~~~~~~ 252 (257)
T 1g3n_C 173 HHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSVSDFDLR 252 (257)
T ss_dssp HHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCHH
Confidence 777999999999999999999999999999999987652110 11233466678999999999999999999775544
Q ss_pred C
Q 020177 277 K 277 (330)
Q Consensus 277 ~ 277 (330)
.
T Consensus 253 ~ 253 (257)
T 1g3n_C 253 I 253 (257)
T ss_dssp C
T ss_pred h
Confidence 3
No 5
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=6.1e-47 Score=346.75 Aligned_cols=223 Identities=14% Similarity=0.137 Sum_probs=193.4
Q ss_pred ChHHHHHHHHHHHhccCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCCcCCCCCCc
Q 020177 39 SIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWP 118 (330)
Q Consensus 39 ~~~e~l~~ll~~E~~~~p~~~yl~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~i~~~~~~~ 118 (330)
-.|+++.+|+++|.++.| .. . ++++++.+|..+||||++|+.+|++.++|+|+||+|+||||++..+++. +
T Consensus 20 ~~d~i~~~l~~~E~~~~p----~~-~-q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~---~ 90 (252)
T 1f5q_B 20 CRQMIYRSEREHDARMVG----VN-V-DQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRE---N 90 (252)
T ss_dssp HHHHHHHHHHHHHHHHSS----SS-H-HHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGG---G
T ss_pred hHHHHHHHHHHHHHHhCc----Cc-c-CCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHH---H
Confidence 356999999999999988 11 2 4568899999999999999999999999999999999999999999887 8
Q ss_pred hhHHHHHHhhhhhhhccccCCchhhhhHhcccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHhcCCCCChHHH
Q 020177 119 WQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGF 198 (330)
Q Consensus 119 lqLla~aCL~LAsK~eE~~~p~l~~l~~~~~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~ 198 (330)
+||+|+|||+||+|+||..||.+.++... +++.|++++|++||+.||++|+|+++.|||++|+++|++.++........
T Consensus 91 lqLvg~tcl~iAsK~eE~~p~~~~~l~~~-~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~ 169 (252)
T 1f5q_B 91 YQSTAAVALHIAGKVRAYMPIKATQLAYL-CGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLN 169 (252)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHHHH-HCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHH-hCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHH
Confidence 99999999999999999999999999654 77899999999999999999999999999999999999988766544455
Q ss_pred HHHHHHHHHHHhhchhcccCccHHHHHHHHHHHHHhhCCCCCCCCccccchhccCCCHHHHHHHHHHHHHHHhh
Q 020177 199 LISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEIPNLSLVNPEHAESWCDGLSKEKIISCYRLMQRLVLN 272 (330)
Q Consensus 199 ~~~~a~~ll~~~l~d~~~l~~~PS~iAaAai~~A~~~~~~~~~~~~~~~l~~~~~~~~e~l~~c~~~l~~l~~~ 272 (330)
+...|.++++.++.|+.|+.|+||+|||||+.++......|.. .....+..++||++++|.+|++.|.+++.+
T Consensus 170 ~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~~~~~~~~-~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~ 242 (252)
T 1f5q_B 170 IYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQKYDYYE-NRIDGVCKSLYITKEELHQCCDLVDIAIVS 242 (252)
T ss_dssp HHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTTTCHHHH-HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhccCCCchh-hHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999997777643322100 002245667999999999999999999865
No 6
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=2.6e-45 Score=337.76 Aligned_cols=227 Identities=26% Similarity=0.325 Sum_probs=205.0
Q ss_pred CCChHHHHHHHHHHHhccCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCCcCCCCC
Q 020177 37 SASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNG 116 (330)
Q Consensus 37 ~~~~~e~l~~ll~~E~~~~p~~~yl~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~i~~~~~ 116 (330)
....+|++..|++.|.++.|+++|+.+ ++++++.+|..+|+||.+|+.+|+++++|+++||+|||||++...+++.
T Consensus 4 ~eY~~di~~~l~~~E~~~~p~~~y~~~--q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~-- 79 (260)
T 2cch_B 4 PDYHEDIHTYLREMEVKCKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRG-- 79 (260)
T ss_dssp CTTHHHHHHHHHHHHHHTCCCTTGGGG--CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHH--
T ss_pred HhHHHHHHHHHHHHHhhcCCCchhhhc--CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHH--
Confidence 457889999999999999999999997 7899999999999999999999999999999999999999999999887
Q ss_pred CchhHHHHHHhhhhhhhccccCCchhhhhHhcccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHhcCCCCChH
Q 020177 117 WPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFM 196 (330)
Q Consensus 117 ~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~~~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~ 196 (330)
++|++|+||||||+|+||..+|.+.++... +++.|++++|.+||+.||++|+|+++.|||++|+.+|+..++.+.
T Consensus 80 -~lqlv~~acl~iA~K~ee~~~~~~~d~~~i-~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~--- 154 (260)
T 2cch_B 80 -KLQLVGTAAMLLASKFEEIYPPEVAEFVYI-TDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPAN--- 154 (260)
T ss_dssp -HHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCC---
T ss_pred -HHhHHHHHHHHHHHHhcccCCCCHHHHHHH-HcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCCh---
Confidence 799999999999999999999999999754 677899999999999999999999999999999999998877554
Q ss_pred HHHHHHHHHHHHHhhchhc-ccCccHHHHHHHHHHHHHhhCCCCCCCCccccchhccCCCHHHHHHHHHHHHHHHhhcCC
Q 020177 197 GFLISRATKIILSNIQEAS-FLEYRPSSIAAAAILCAANEIPNLSLVNPEHAESWCDGLSKEKIISCYRLMQRLVLNDSR 275 (330)
Q Consensus 197 ~~~~~~a~~ll~~~l~d~~-~l~~~PS~iAaAai~~A~~~~~~~~~~~~~~~l~~~~~~~~e~l~~c~~~l~~l~~~~~~ 275 (330)
..+...|+++++.++.++. |++|+||.|||||+++|+..++. +.| ...+..++|+++++|.+|++.|.+++.+...
T Consensus 155 ~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w--~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~ 231 (260)
T 2cch_B 155 CKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSW--PESLIRKTGYTLESLKPCLMDLHQTYLKAPQ 231 (260)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCS--CHHHHHHHCCCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-Ccc--hHHHHHHhCcCHHHHHHHHHHHHHHHHhcCC
Confidence 2456679999999999999 99999999999999999986643 233 2357778999999999999999999876544
No 7
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=7.5e-44 Score=329.61 Aligned_cols=221 Identities=20% Similarity=0.281 Sum_probs=199.4
Q ss_pred ChHHHHHHHHHHHhccCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCCcCCCCCCc
Q 020177 39 SIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWP 118 (330)
Q Consensus 39 ~~~e~l~~ll~~E~~~~p~~~yl~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~i~~~~~~~ 118 (330)
..+|++..|++.|.++.|+++|++. + ++++++|..+++||.+++.+|+++++|+++||+|||||++...+++. +
T Consensus 6 Y~~di~~~l~~~E~~~~~~~~y~~~--q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~---~ 79 (269)
T 2b9r_A 6 YVKDIYAYLRQLEAAQAVRPKYLLG--R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKK---M 79 (269)
T ss_dssp -CCTTTTTHHHHHHTTCCCTTTTSS--S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGG---G
T ss_pred HHHHHHHHHHHHHHhhCCCcccccC--C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHH---H
Confidence 4568889999999999999999986 5 89999999999999999999999999999999999999999999887 7
Q ss_pred hhHHHHHHhhhhhhhccccCCchhhhhHhcccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHhcCCCCChHHH
Q 020177 119 WQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGF 198 (330)
Q Consensus 119 lqLla~aCL~LAsK~eE~~~p~l~~l~~~~~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~ 198 (330)
+|++|+||||||+|+||..+|.+.++... +++.|++++|.+||+.||++|+|+++.|||++|+.+|+..++.+ ..
T Consensus 80 lqlv~~acL~iA~K~eE~~~p~~~d~~~~-~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~----~~ 154 (269)
T 2b9r_A 80 LQLVGVTAMFIASKYEEMYPPEIGDFAFV-TDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVD----VE 154 (269)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCC----HH
T ss_pred hhHHHHHHHHHHHhcccccCccHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCC----HH
Confidence 99999999999999999999999999754 67789999999999999999999999999999999998776543 34
Q ss_pred HHHHHHHHHHHhhchhcccCccHHHHHHHHHHHHHhhCCCCCCCCccccchhccCCCHHHHHHHHHHHHHHHhhc
Q 020177 199 LISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEIPNLSLVNPEHAESWCDGLSKEKIISCYRLMQRLVLND 273 (330)
Q Consensus 199 ~~~~a~~ll~~~l~d~~~l~~~PS~iAaAai~~A~~~~~~~~~~~~~~~l~~~~~~~~e~l~~c~~~l~~l~~~~ 273 (330)
+...|+++++.++.++.|++|+||.||||||++|+..++.. .| ...+..++||++++|.+|++.|.+++...
T Consensus 155 ~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~-~w--~~~l~~~tg~~~~~l~~~~~~l~~~~~~~ 226 (269)
T 2b9r_A 155 QHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG-EW--TPTLQHYLSYTEESLLPVMQHLAKNVVMV 226 (269)
T ss_dssp HHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC-CS--CTTHHHHSCCCSSTTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC-CC--CHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 55679999999999999999999999999999999877542 23 23577889999999999999999988754
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.4e-43 Score=328.51 Aligned_cols=218 Identities=20% Similarity=0.334 Sum_probs=193.0
Q ss_pred ChHHHHHHHHHHHhccCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcC-CCcCCCCCC
Q 020177 39 SIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYS-RRLPDNNGW 117 (330)
Q Consensus 39 ~~~e~l~~ll~~E~~~~p~~~yl~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~~t~~lAv~~~DRfls~-~~i~~~~~~ 117 (330)
+.+|++.+|+++|.++.|+++|+.. ++++++++|..+++||++++.+|++.++|+++||+|||||++. ..+++.
T Consensus 17 y~~~i~~~l~~~E~~~~~~~~y~~~--q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~--- 91 (283)
T 1w98_B 17 NREEVWKIMLNKEKTYLRDQHFLEQ--HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKT--- 91 (283)
T ss_dssp CHHHHHHHHHHHTTTSCCCTTGGGG--CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGG---
T ss_pred CHHHHHHHHHHHHHHhCCCchhhcc--CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHH---
Confidence 5789999999999999999999987 7899999999999999999999999999999999999999998 467655
Q ss_pred chhHHHHHHhhhhhhhccccCCchhhhhHhcccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHhcCCCCC---
Q 020177 118 PWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGT--- 194 (330)
Q Consensus 118 ~lqLla~aCL~LAsK~eE~~~p~l~~l~~~~~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~--- 194 (330)
++||+|+||||||+|+||..+|.+.++... +++.|++++|.+||+.||++|+|++++|||++|+.+|+..++..+.
T Consensus 92 ~lqlv~~acL~iA~K~eE~~~p~l~~~~~i-~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~ 170 (283)
T 1w98_B 92 LLQLIGISSLFIAAKLEEIYPPKLHQFAYV-TDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEV 170 (283)
T ss_dssp GHHHHHHHHHHHHHHHHCSSCCCHHHHHHT-TTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCS
T ss_pred HHHHHHHHHHHHHHHhcccCCCcHHHHHHH-HcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhH
Confidence 899999999999999999999999999654 6778999999999999999999999999999999999987654321
Q ss_pred ----hHHHHHHHHHHHHHHhhchhcccCccHHHHHHHHHHHHHhhCCCCCCCCccccchhccCCCHHHHHHHHHHHHHHH
Q 020177 195 ----FMGFLISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEIPNLSLVNPEHAESWCDGLSKEKIISCYRLMQRLV 270 (330)
Q Consensus 195 ----~~~~~~~~a~~ll~~~l~d~~~l~~~PS~iAaAai~~A~~~~~~~~~~~~~~~l~~~~~~~~e~l~~c~~~l~~l~ 270 (330)
........+.++++.++.|+.|++|+||.||||||++|+. ...+..++||++++|.+|++.|.+++
T Consensus 171 ~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~----------~~~l~~~tg~~~~~i~~c~~~l~~~~ 240 (283)
T 1w98_B 171 LLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS----------SELMQKVSGYQWCDIENCVKWMVPFA 240 (283)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC----------HHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC----------hHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 1122334577899999999999999999999999999852 23467789999999999999999877
Q ss_pred hh
Q 020177 271 LN 272 (330)
Q Consensus 271 ~~ 272 (330)
..
T Consensus 241 ~~ 242 (283)
T 1w98_B 241 MV 242 (283)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=5.3e-36 Score=274.99 Aligned_cols=203 Identities=18% Similarity=0.250 Sum_probs=171.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCCcCCCCCCchhHHHHHHhhhhhhhccccCCchhhhhHh
Q 020177 68 SLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVE 147 (330)
Q Consensus 68 ~i~~~~R~~lvdWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~ 147 (330)
+....+|..+++||.+++.+|+++++|+++|++|||||+++..+.+. ++|++|+||||||||+||. ++++.++...
T Consensus 35 ~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~---~~qlv~~acL~lA~K~eE~-~~~l~d~~~~ 110 (258)
T 2i53_A 35 ATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQF---PRYVTGACCLFLAGKVEET-PKKCKDIIKT 110 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhc---CHHHHHHHHHHHHHccccc-cccHHHHHHH
Confidence 45678999999999999999999999999999999999999999887 7999999999999999995 8889998632
Q ss_pred ----cccccc------cHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhchhccc
Q 020177 148 ----GAKYIF------ETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFL 217 (330)
Q Consensus 148 ----~~~~~~------~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~a~~ll~~~l~d~~~l 217 (330)
..++.| ++++|++||+.||++|+|+++++||+.|+.+|++.++.+......+...|+++++.++.++.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l 190 (258)
T 2i53_A 111 ARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSL 190 (258)
T ss_dssp HHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGG
T ss_pred HHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchh
Confidence 122334 4899999999999999999999999999999999887765444578888999999999999999
Q ss_pred CccHHHHHHHHHHHHHhhCCC-CCCCCcc-ccchhc----cCCCHHHHHHHHHHHHHHHhhcC
Q 020177 218 EYRPSSIAAAAILCAANEIPN-LSLVNPE-HAESWC----DGLSKEKIISCYRLMQRLVLNDS 274 (330)
Q Consensus 218 ~~~PS~iAaAai~~A~~~~~~-~~~~~~~-~~l~~~----~~~~~e~l~~c~~~l~~l~~~~~ 274 (330)
+|+||.||+|||++|.+.++. .+.|... ....|+ +|+++++|.+|++.|.++|.+..
T Consensus 191 ~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~~~ 253 (258)
T 2i53_A 191 QWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGK 253 (258)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSSSC
T ss_pred ccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhccc
Confidence 999999999999999986642 1222110 111232 49999999999999999986543
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=2.8e-34 Score=263.58 Aligned_cols=194 Identities=18% Similarity=0.210 Sum_probs=163.2
Q ss_pred CHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCCcCCCCCCchhHHHHHHhhhhhhhccccCCchhhhhHhc-
Q 020177 70 DASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEG- 148 (330)
Q Consensus 70 ~~~~R~~lvdWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~~- 148 (330)
...+|..+++||.+++.+|+++++|+++|++|||||++.+.+.+. ++|++|+||||||||+||. ++++.++....
T Consensus 27 e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~---~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~ 102 (257)
T 2ivx_A 27 ELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKF---NKNIISSTALFLAAKVEEQ-ARKLEHVIKVAH 102 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhh---CHHHHHHHHHHHHhccccC-CcCHHHHHHHHH
Confidence 358999999999999999999999999999999999999999887 7999999999999999999 88999985321
Q ss_pred ------------cccccc--HHHHHHHHHHHHHHcCccccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhc-h
Q 020177 149 ------------AKYIFE--TKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQ-E 213 (330)
Q Consensus 149 ------------~~~~~~--~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~a~~ll~~~l~-d 213 (330)
.+..|+ +++|++||+.||++|+|+++++||+.|+.+|++.++.+ ..+...|+++++.++. +
T Consensus 103 ~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~----~~~~~~A~~~~~~sl~~~ 178 (257)
T 2ivx_A 103 ACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRAS----KDLAQTSYFMATNSLHLT 178 (257)
T ss_dssp HHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHHHC
T ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCC----cHHHHHHHHHHHhhhhcc
Confidence 223455 99999999999999999999999999999999888754 3466779999998885 4
Q ss_pred hcccCccHHHHHHHHHHHHHhhCCCC-CCCCccccchh----ccCCCHHHHHHHHHHHHHHHhhc
Q 020177 214 ASFLEYRPSSIAAAAILCAANEIPNL-SLVNPEHAESW----CDGLSKEKIISCYRLMQRLVLND 273 (330)
Q Consensus 214 ~~~l~~~PS~iAaAai~~A~~~~~~~-~~~~~~~~l~~----~~~~~~e~l~~c~~~l~~l~~~~ 273 (330)
..+++|+||.||+|||++|...++.. +.. .+...| ..++++++|.+|++.|.+++...
T Consensus 179 ~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~--~~~~~W~~~~~~~~~~~~l~~~~~~i~~~~~~~ 241 (257)
T 2ivx_A 179 TFCLQYKPTVIACVCIHLACKWSNWEIPVS--TDGKHWWEYVDPTVTLELLDELTHEFLQILEKT 241 (257)
T ss_dssp CGGGTSCHHHHHHHHHHHHHHHHTCCCCCC--TTCCCGGGGTCSSCCHHHHHHHHHHHHHHHHTS
T ss_pred cHHHcCCHHHHHHHHHHHHHHHhCCCCCCC--CCCchHHHHhCCCCCHHHHHHHHHHHHHHHHhC
Confidence 45899999999999999999876521 111 111122 24799999999999999999653
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.5e-34 Score=264.62 Aligned_cols=190 Identities=19% Similarity=0.165 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCCcCCCCCCchhHHHHHHhhhhhhhccccCCchhhhhHh---
Q 020177 71 ASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVE--- 147 (330)
Q Consensus 71 ~~~R~~lvdWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~--- 147 (330)
.++|..+++||.+++..|+++++|+++|++|||||++.+.+.+. ++|++|+||||||||+||+.+|.+.+++..
T Consensus 40 ~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~---~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~ 116 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSI---DPVLMAPTCVFLASKVEEFGVVSNTRLIAAATS 116 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTS---CHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhc---CHHHHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999887 799999999999999999988888887532
Q ss_pred ----------cccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhchhccc
Q 020177 148 ----------GAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFL 217 (330)
Q Consensus 148 ----------~~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~a~~ll~~~l~d~~~l 217 (330)
...+.+++++|++||+.||++|+|++.++||+.||.+|++.++.. ..+...|+++++.++.+..++
T Consensus 117 ~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~----~~~~~~A~~~l~~sl~t~~~l 192 (285)
T 3rgf_B 117 VLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE----DMLLPLAWRIVNDTYRTDLCL 192 (285)
T ss_dssp HHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCH----HHHHHHHHHHHHHHTTSSHHH
T ss_pred HHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHccChhh
Confidence 123457899999999999999999999999999999999988753 457788999999999999999
Q ss_pred CccHHHHHHHHHHHHHhhCCCCCCCCccccchhccCCCHHHHHHHHHHHHHHHhh
Q 020177 218 EYRPSSIAAAAILCAANEIPNLSLVNPEHAESWCDGLSKEKIISCYRLMQRLVLN 272 (330)
Q Consensus 218 ~~~PS~iAaAai~~A~~~~~~~~~~~~~~~l~~~~~~~~e~l~~c~~~l~~l~~~ 272 (330)
+|+||.||+|||++|.+..+.- ...+....++++++|.+|++.|.++|..
T Consensus 193 ~~~Ps~IAaAaiylA~~~~~~~-----~~~W~~~~~~~~~~l~~~~~~il~ly~~ 242 (285)
T 3rgf_B 193 LYPPFMIALACLHVACVVQQKD-----ARQWFAELSVDMEKILEIIRVILKLYEQ 242 (285)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCC-----CHHHHHTSCSCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHcCCC-----hhhHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999877531 1123334799999999999999999875
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-33 Score=254.95 Aligned_cols=188 Identities=16% Similarity=0.137 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCCcCC-CCCCchhHHHHHHhhhhhhhccccCCchhhhhHhcc---
Q 020177 74 REESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPD-NNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGA--- 149 (330)
Q Consensus 74 R~~lvdWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~i~~-~~~~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~~~--- 149 (330)
|..+++||.+++..++++++|+++|++|||||++...+.+ . .+|++|+||||||||+||. ++++.++.....
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~---~~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~ 103 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGF---SLEALVATCIYLSCKVEEC-PVHIRTICNEANDLW 103 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCC---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccccccc---CHHHHHHHHHHHHhccccC-cccHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999988 6 7999999999999999995 778999864321
Q ss_pred --cccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhchhcccCccHHHHHHH
Q 020177 150 --KYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAA 227 (330)
Q Consensus 150 --~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~a~~ll~~~l~d~~~l~~~PS~iAaA 227 (330)
.+.+++++|.+||+.||++|+|++.++||+.||.+|++.++.+ ..+...|+++++.++.+..+++|+||.||||
T Consensus 104 ~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~----~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaA 179 (235)
T 1zp2_A 104 SLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIIN----QKQLEFAWSIVNDSYASSLCLMAHPHQLAYA 179 (235)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSC----HHHHHHHHHHHHHHTTTTGGGTSCHHHHHHH
T ss_pred cchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHcCCchhccCHHHHHHH
Confidence 2358999999999999999999999999999999999876543 3467789999999999999999999999999
Q ss_pred HHHHHHhhCCCCCCCCccccchhccCCCHHHHHHHHHHHHHHHhhc
Q 020177 228 AILCAANEIPNLSLVNPEHAESWCDGLSKEKIISCYRLMQRLVLND 273 (330)
Q Consensus 228 ai~~A~~~~~~~~~~~~~~~l~~~~~~~~e~l~~c~~~l~~l~~~~ 273 (330)
||++|....+... + ....|+.|+++++|.+|++.|.++|...
T Consensus 180 ai~lA~~~~~~~~---~-~~~~~~~~~~~~~i~~~~~~i~~ly~~~ 221 (235)
T 1zp2_A 180 ALLISCCNDENTI---P-KLLDLIKSTDAFKVILCVQRIISIYYFE 221 (235)
T ss_dssp HHHHHHTSCTTHH---H-HHHHHCCHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhcCCCC---C-CCcchhhcCCHHHHHHHHHHHHHHHhhC
Confidence 9999998765210 0 0123445999999999999999999754
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=2.3e-33 Score=268.85 Aligned_cols=197 Identities=17% Similarity=0.188 Sum_probs=163.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCCcCCCCCCchhHHHHHHhhhhhhhccccCCchhhhhHhc
Q 020177 69 LDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEG 148 (330)
Q Consensus 69 i~~~~R~~lvdWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~~ 148 (330)
....+|..+++||.+|+..|+|+++|+++|++|||||++.+.+.+. ++|++|+||||||+|+||. ++.+.+++...
T Consensus 33 ~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~---~~qlva~acLfLA~K~EE~-p~~l~d~v~v~ 108 (358)
T 2pk2_A 33 KELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRF---PGNSVAPAALFLAAKVEEQ-PKKLEHVIKVA 108 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccc---cHHHHHHHHHHHHHhhccC-CCCHHHHHHHH
Confidence 3468999999999999999999999999999999999999999887 7999999999999999999 88899986221
Q ss_pred -------------cccccc--HHHHHHHHHHHHHHcCccccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhch
Q 020177 149 -------------AKYIFE--TKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQE 213 (330)
Q Consensus 149 -------------~~~~~~--~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~a~~ll~~~l~d 213 (330)
.+..|+ +++|++||+.||++|+|++.++||+.||.+|++.++.. ..+...|+++++.++..
T Consensus 109 ~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~----~~l~~~A~~ll~~sl~~ 184 (358)
T 2pk2_A 109 HTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRAS----KDLAQTSYFMATNSLHL 184 (358)
T ss_dssp HHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCC----HHHHHHHHHHHHHHTTT
T ss_pred HHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhc
Confidence 122344 89999999999999999999999999999999887654 34677899999998854
Q ss_pred -hcccCccHHHHHHHHHHHHHhhCCCCCCCCccccchhc----cCCCHHHHHHHHHHHHHHHhhcC
Q 020177 214 -ASFLEYRPSSIAAAAILCAANEIPNLSLVNPEHAESWC----DGLSKEKIISCYRLMQRLVLNDS 274 (330)
Q Consensus 214 -~~~l~~~PS~iAaAai~~A~~~~~~~~~~~~~~~l~~~----~~~~~e~l~~c~~~l~~l~~~~~ 274 (330)
..++.|+||.||||||++|+..++..-... .....|+ .++++++|.+|++.|.+++...+
T Consensus 185 t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~-~~~~~W~~~~~~~vt~~~l~~i~~~il~~y~~~~ 249 (358)
T 2pk2_A 185 TTFSLQYTPPVVACVCIHLACKWSNWEIPVS-TDGKHWWEYVDATVTLELLDELTHEFLQILEKTP 249 (358)
T ss_dssp SCGGGTSCHHHHTTTTTTTHHHHTTCCCCCC-SSSCCTTTTSCSSCCHHHHHHHHHHHHHHTTTCT
T ss_pred CcchhccCHHHHHHHHHHHHHHHhCCCCCCC-ccccchHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 448999999999999999998775211100 1111222 47899999999999999986543
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.97 E-value=6.6e-31 Score=248.72 Aligned_cols=244 Identities=16% Similarity=0.166 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHhcCCCcCCCCCCchhHHHHHHhhhhhhhccccCCchhhhhHhc
Q 020177 71 ASAREESVAWILKVQAYYN--FLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEG 148 (330)
Q Consensus 71 ~~~R~~lvdWi~~v~~~~~--l~~~t~~lAv~~~DRfls~~~i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~~ 148 (330)
..+|...++||.+++..|+ ++++|+++|++|||||++.+.+.+. ++|++|+||||||||+||. ++++.++....
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~---~~~lva~acLfLA~K~EE~-~~~l~d~v~~~ 129 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEY---HPRIIMLTCAFLACKVDEF-NVSSPQFVGNL 129 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhc---CHHHHHHHHHHHHHhhhcC-CCCHHHHHHHh
Confidence 3568999999999999999 9999999999999999999999877 7999999999999999998 57899986432
Q ss_pred cc----ccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHhcC----CCCChHHHHHHHHHHHHHHhhchhcccCcc
Q 020177 149 AK----YIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLD----PTGTFMGFLISRATKIILSNIQEASFLEYR 220 (330)
Q Consensus 149 ~~----~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~----~~~~~~~~~~~~a~~ll~~~l~d~~~l~~~ 220 (330)
.. ..|++++|++||+.||++|+|++.++||+.||..|+..+. ..+ ....+...|+++++.++.+..++.|+
T Consensus 130 ~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~-~~~~l~~~A~~~l~~sl~t~~~l~~~ 208 (323)
T 1jkw_A 130 RESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILE-NPEILRKTADDFLNRIALTDAYLLYT 208 (323)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCC-CHHHHHHHHHHHHHHHTTSTHHHHSC
T ss_pred ccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhccHHHcCC
Confidence 21 1367899999999999999999999999999999986552 112 23457788999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCC-CCCCCccccchh--ccCCCHHHHHHHHHHHHHHHhhcCCCCCCCccCcc-h-hhhh----h
Q 020177 221 PSSIAAAAILCAANEIPN-LSLVNPEHAESW--CDGLSKEKIISCYRLMQRLVLNDSRRKQPKVIPQL-R-VTIR----A 291 (330)
Q Consensus 221 PS~iAaAai~~A~~~~~~-~~~~~~~~~l~~--~~~~~~e~l~~c~~~l~~l~~~~~~~~~~~~~p~~-~-~~~~----~ 291 (330)
||.||||||++|....+. .+.|.. .+.. ..+++.++|.+|++.|..++..... |.. . .++. .
T Consensus 209 Ps~IAaAai~lA~~~~~~~~~~w~~--~l~~~~~~~~~~~~l~~~~~~i~~l~~~~~~-------~~~~~~k~i~~KL~~ 279 (323)
T 1jkw_A 209 PSQIALTAILSSASRAGITMESYLS--ESLMLKENRTCLSQLLDIMKSMRNLVKKYEP-------PRSEEVAVLKQKLDR 279 (323)
T ss_dssp HHHHHHHHHHHHHHHHSCCCTTHHH--HHTTSCSSSCCTHHHHHHHHHHHHHHHTCCC-------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHH--HHhccccccccHHHHHHHHHHHHHHHHccCC-------CCHHHHHHHHHHHHH
Confidence 999999999999976652 222211 1212 2577899999999999999965311 111 1 1121 1
Q ss_pred hccc--cCCC---CCCCCCCCCChhhhcccCCCcccccCCCC
Q 020177 292 RMRS--SCDS---SSSSSSSSSPTYKRRKLNNYLWVGDDKGG 328 (330)
Q Consensus 292 ~~~~--s~~~---~~~~~~~~~~~~kr~~~~~~~~~~~~~~~ 328 (330)
|... .+.+ -.-........+||+|+..--|.|+|-.+
T Consensus 280 c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (323)
T 1jkw_A 280 CHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEWTDDDLVE 321 (323)
T ss_dssp HHHSCSCC----------------------------------
T ss_pred HhChhcCCcHHHHHHhhhcccchhhhhhhhhhhhhhhhhhhc
Confidence 2211 1111 00000112455688999888899987654
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.94 E-value=5.6e-26 Score=201.77 Aligned_cols=186 Identities=19% Similarity=0.181 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCCcCCCCCCchhHHHHHHhhhhhhhccccCCchhhhhHhcccc
Q 020177 72 SAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKY 151 (330)
Q Consensus 72 ~~R~~lvdWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~~~~~ 151 (330)
+......++|.+++..+++++.|+.+|++||+||+....+... ..+++|+||||||||+||. |+++.++... .+
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~---~~~~v~aaclylAcK~ee~-p~~l~di~~~-~~- 76 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGR---ANDAIASACLYIACRQEGV-PRTFKEICAV-SR- 76 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHT-SS-
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCC---CHHHHHHHHHHHHHHhcCC-CCCHHHHHHH-HC-
Confidence 3467889999999999999999999999999999999988776 6999999999999999998 7899998644 33
Q ss_pred cccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhchhcccCccHHHHHHHHHHH
Q 020177 152 IFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAAAILC 231 (330)
Q Consensus 152 ~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~a~~ll~~~l~d~~~l~~~PS~iAaAai~~ 231 (330)
++..+|.++|+.||++|+|++..++|+.|+.+|...++.++ .+...|+++++.++.+.-+++++|+.|||||||+
T Consensus 77 -~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~----~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiyl 151 (207)
T 1c9b_A 77 -ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPK----QVQMAATHIARKAVELDLVPGRSPISVAAAAIYM 151 (207)
T ss_dssp -SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHH
Confidence 78999999999999999999999999999999999988753 4666799999999888888999999999999999
Q ss_pred HHhhCCCCCCCCccccchhccCCCHHHHHHHHHHHHHHHh
Q 020177 232 AANEIPNLSLVNPEHAESWCDGLSKEKIISCYRLMQRLVL 271 (330)
Q Consensus 232 A~~~~~~~~~~~~~~~l~~~~~~~~e~l~~c~~~l~~l~~ 271 (330)
|.+..+. + .+...+...+++++..|.+|++.|.+...
T Consensus 152 A~~~~~~-~--~~~~~i~~~~~v~~~tI~~~~~~l~~~l~ 188 (207)
T 1c9b_A 152 ASQASAE-K--RTQKEIGDIAGVADVTIRQSYRLIYPRAP 188 (207)
T ss_dssp HHHTSSS-C--CCHHHHHHHHTCCHHHHHHHHHHHGGGHH
T ss_pred HHHHHCC-C--CCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 9987752 1 12335677799999999999999987553
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.89 E-value=1.3e-21 Score=172.67 Aligned_cols=186 Identities=13% Similarity=0.119 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCCcCCCCCCchhHHHHHHhhhhhhhccccCCchhhhhHhcccc
Q 020177 72 SAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKY 151 (330)
Q Consensus 72 ~~R~~lvdWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~~~~~ 151 (330)
+......++|.+++..+++++.+...|..|++||+....+... ..+.++++|+|+|||.|+. |.++.|+... .+
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr---~~~~vaaAclylAcr~~~~-p~~l~di~~~-~~- 80 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGR---SIESVMAACVYAACRLLKV-PRTLDEIADI-AR- 80 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTC---CHHHHHHHHHHHHHHHHTC-CCCHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCC---CHHHHHHHHHHHHHHHcCC-CCCHHHHHHH-HC-
Confidence 4457899999999999999999999999999999999877665 6999999999999999995 7899998654 33
Q ss_pred cccHHHHHHHHHHHHHHcCccccC--CChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhchhcccCccHHHHHHHHH
Q 020177 152 IFETKTIRRMELLVLSVLDWRLRS--VTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAAAI 229 (330)
Q Consensus 152 ~~~~~~I~~mE~~IL~~L~w~l~~--~Tp~~Fl~~fl~~l~~~~~~~~~~~~~a~~ll~~~l~d~~~l~~~PS~iAaAai 229 (330)
++..+|.++++.|++.|+|++.+ ++|+.|+.+|...++.++ .+.+.|+++++.+..+.-+.+++|+.||||||
T Consensus 81 -v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~----~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAal 155 (200)
T 1ais_B 81 -VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE----KVRRRAIEILDEAYKRGLTSGKSPAGLVAAAL 155 (200)
T ss_dssp -SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH----HHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHH
Confidence 78999999999999999999999 999999999999998753 46677999999999888889999999999999
Q ss_pred HHHHhhCCCCCCCCccccchhccCCCHHHHHHHHHHHHHHHh
Q 020177 230 LCAANEIPNLSLVNPEHAESWCDGLSKEKIISCYRLMQRLVL 271 (330)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~l~~~~~~~~e~l~~c~~~l~~l~~ 271 (330)
|+|.+..+.. .+.+.+...+|+++..|..|++.|.+.+.
T Consensus 156 y~A~~~~~~~---~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 156 YIASLLEGEK---RTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHTTCC---CCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCC---CCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 9999877531 12345777899999999999999988763
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.3e-18 Score=163.03 Aligned_cols=183 Identities=11% Similarity=0.068 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCCcCCCCCCchhHHHHHHhhhhhhhccccCCchhhhhHhcccccc
Q 020177 74 REESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIF 153 (330)
Q Consensus 74 R~~lvdWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~~~~~~~ 153 (330)
...+...|..++..++++..+.-.|..||.|++....+... ..+.++++|||||+|.|+. |.++.++... .+ +
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr---~~~~vaaAclyiAcR~e~~-prtl~ei~~~-~~--v 198 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGK---SMESIMAASILIGCRRAEV-ARTFKEIQSL-IH--V 198 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCC---CSHHHHTTTTTTTSBTTBS-SCCHHHHHHS-SS--C
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCC---cHHHHHHHHHHHHHHHcCC-CccHHHHHHH-HC--C
Confidence 35788999999999999999999999999999999888766 6999999999999998887 7899998643 33 7
Q ss_pred cHHHHHHHHHHHHHHcC------------ccccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhchhcccCccH
Q 020177 154 ETKTIRRMELLVLSVLD------------WRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRP 221 (330)
Q Consensus 154 ~~~~I~~mE~~IL~~L~------------w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~a~~ll~~~l~d~~~l~~~P 221 (330)
++++|.++++.|++.|+ +.+.+++|..|+.+|...++... .+...|+++++.+..+.-+.+++|
T Consensus 199 ~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~----~v~~~A~~i~~~~~~~~l~~Gr~P 274 (345)
T 3k7a_M 199 KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM----QVTTSAEYTAKKCKEIKEIAGKSP 274 (345)
T ss_dssp CSHHHHHHHHHHHHHHTCC-------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhchhcCCCH
Confidence 89999999999999999 99999999999999999887753 456678999999988887889999
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCccccchhccCCCHHHHHHHHHHHHHHH
Q 020177 222 SSIAAAAILCAANEIPNLSLVNPEHAESWCDGLSKEKIISCYRLMQRLV 270 (330)
Q Consensus 222 S~iAaAai~~A~~~~~~~~~~~~~~~l~~~~~~~~e~l~~c~~~l~~l~ 270 (330)
+.|||||||+|....+.. . +...+....++++..|..+++.|.+..
T Consensus 275 ~~IAaAaIylAa~~~~~~-~--t~~eIa~~~~Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 275 ITIAVVSIYLNILLFQIP-I--TAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHCCC-C--CHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999776531 1 234567779999999999999998765
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.37 E-value=1.1e-12 Score=124.68 Aligned_cols=182 Identities=11% Similarity=0.068 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCCcCCCCCCchhHHHHHHhhhhhhhccccCCchhhhhHhccccccc
Q 020177 75 EESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFE 154 (330)
Q Consensus 75 ~~lvdWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~~~~~~~~ 154 (330)
..+...|.+++..++++..+.-.|..+|.+++....+... ....++++|||+|+|.++. |.++.++... .+ .+
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGr---s~e~vaAAclYiACR~~~~-prtl~eI~~~-~~--v~ 199 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGK---SMESIMAASILIGCRRAEV-ARTFKEIQSL-IH--VK 199 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTC---CHHHHHHHHHHHHHHHTCC-BCCHHHHHHH-HT--CC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCC---CHHHHHHHHHHHHHHhcCC-CccHHHHHHH-hC--CC
Confidence 5677889999999999999999999999999998777655 5899999999999998876 7788888643 22 57
Q ss_pred HHHHHHHHHHHHHHcCcc------------ccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhchhcccCccHH
Q 020177 155 TKTIRRMELLVLSVLDWR------------LRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPS 222 (330)
Q Consensus 155 ~~~I~~mE~~IL~~L~w~------------l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~a~~ll~~~l~d~~~l~~~PS 222 (330)
+.+|.+..+.|.+.|+.. +...+|..|+.+|...++... .+...|..++..+..+.-..+.+|+
T Consensus 200 ~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~----~v~~~A~~i~~~~~~~~i~~GR~P~ 275 (345)
T 4bbr_M 200 TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM----QVTTSAEYTAKKCKEIKEIAGKSPI 275 (345)
T ss_dssp TTHHHHHHHHHHHCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcH----HHHHHHHHHHHHHHhcccccCCChH
Confidence 899999999999999974 777899999999999888754 3455678888777765556789999
Q ss_pred HHHHHHHHHHHhhCCCCCCCCccccchhccCCCHHHHHHHHHHHHHHH
Q 020177 223 SIAAAAILCAANEIPNLSLVNPEHAESWCDGLSKEKIISCYRLMQRLV 270 (330)
Q Consensus 223 ~iAaAai~~A~~~~~~~~~~~~~~~l~~~~~~~~e~l~~c~~~l~~l~ 270 (330)
.|||||||+|....+.. .....+....++++.-|...++.|.+..
T Consensus 276 ~IAAAaIylAa~l~g~~---~t~~eIa~v~~Vse~TIr~rykel~~~~ 320 (345)
T 4bbr_M 276 TIAVVSIYLNILLFQIP---ITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999999766531 1234567778999999998888887544
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.38 E-value=2.2e-06 Score=78.73 Aligned_cols=107 Identities=8% Similarity=0.034 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCC-cCCCCCCchhHHHHHHhhhhhhhccccCCchhhhhHhcccccccH
Q 020177 77 SVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRR-LPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFET 155 (330)
Q Consensus 77 lvdWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~-i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~~~~~~~~~ 155 (330)
+-+|+.++..+-+++..++..|+.|+||+..... +.. +++...-+-++||.+|+|+-+.....-..+... ..++.
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l-~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV---gGisl 152 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTL-NSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV---GGVRC 152 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCC-STTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH---HTSCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCcc-CCchHHHHHHHHHHHHHHhccccccChhHhhhc---cCcCH
Confidence 5678999999999999999999999999988543 322 234578889999999999977666677777644 24799
Q ss_pred HHHHHHHHHHHHHcCccccCCChHHHHHHHHHh
Q 020177 156 KTIRRMELLVLSVLDWRLRSVTPFSFIYFFACK 188 (330)
Q Consensus 156 ~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~ 188 (330)
+++.+||+..|..|+|++.+. +..|..+++..
T Consensus 153 ~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 153 HELNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 999999999999999999765 44566555543
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.14 E-value=0.029 Score=48.17 Aligned_cols=89 Identities=12% Similarity=0.074 Sum_probs=71.7
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHhcCCCcCCCCCCchhHHHHHHhhhhhhhccccCCchhhhhHhcccccccHHHH
Q 020177 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTI 158 (330)
Q Consensus 79 dWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~~~~~~~~~~~I 158 (330)
++|.+.+..++++.++.-.|..++.+.....-+... ....+|++|+++|++.... +.+..++... ++ .+..+|
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr---~P~~iAaAaly~A~~~~~~-~~t~~ei~~~-~~--vs~~ti 182 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGK---SPAGLVAAALYIASLLEGE-KRTQREVAEV-AR--VTEVTV 182 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHH-HT--CCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCC---CHHHHHHHHHHHHHHHhCC-CCCHHHHHHH-hC--CCHHHH
Confidence 567778889999999999999999999876555443 6899999999999998764 4467777543 32 588999
Q ss_pred HHHHHHHHHHcCcccc
Q 020177 159 RRMELLVLSVLDWRLR 174 (330)
Q Consensus 159 ~~mE~~IL~~L~w~l~ 174 (330)
.+.=+.+.+.|+-.+.
T Consensus 183 ~~~~~~l~~~l~~~~~ 198 (200)
T 1ais_B 183 RNRYKELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999986553
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=95.01 E-value=0.19 Score=43.22 Aligned_cols=87 Identities=16% Similarity=0.217 Sum_probs=64.9
Q ss_pred hHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhchhcccCccHHHHHHHHHHHHHhhCCCCCCCCccccchhccCCCHH
Q 020177 178 PFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEIPNLSLVNPEHAESWCDGLSKE 257 (330)
Q Consensus 178 p~~Fl~~fl~~l~~~~~~~~~~~~~a~~ll~~~l~d~~~l~~~PS~iAaAai~~A~~~~~~~~~~~~~~~l~~~~~~~~e 257 (330)
...+|..+...++.++ .+...|..+....+....+.+++|-.||+||+|+|.+.-+. + .....+...+++++.
T Consensus 8 a~~~I~~~~~~L~L~~----~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p--~~l~di~~~~~~~~~ 80 (207)
T 1c9b_A 8 AFKEITTMADRINLPR----NIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-P--RTFKEICAVSRISKK 80 (207)
T ss_dssp HHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-C--CCHHHHHHTSSSCHH
T ss_pred HHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-C--CCHHHHHHHHCCCHH
Confidence 5677888888887763 45566777777777666678899999999999999986542 2 122345566889999
Q ss_pred HHHHHHHHHHHHHh
Q 020177 258 KIISCYRLMQRLVL 271 (330)
Q Consensus 258 ~l~~c~~~l~~l~~ 271 (330)
+|..+++.|.+.+.
T Consensus 81 ~i~~~~~~ll~~L~ 94 (207)
T 1c9b_A 81 EIGRCFKLILKALE 94 (207)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHC
Confidence 99999988877653
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=90.64 E-value=0.86 Score=42.64 Aligned_cols=89 Identities=12% Similarity=0.049 Sum_probs=64.2
Q ss_pred CChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhchhcccCccHHHHHHHHHHHHHhhCCCCCCCCccccchhccCCC
Q 020177 176 VTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEIPNLSLVNPEHAESWCDGLS 255 (330)
Q Consensus 176 ~Tp~~Fl~~fl~~l~~~~~~~~~~~~~a~~ll~~~l~d~~~l~~~PS~iAaAai~~A~~~~~~~~~~~~~~~l~~~~~~~ 255 (330)
...+..|..+...++.++ .+.+.|..+...+...-.+-+.+...|||||||+|.+..+. + ..-..+...++++
T Consensus 127 ~~a~~~I~~~~~~L~Lp~----~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~-p--rtl~eI~~~~~v~ 199 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPK----IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-A--RTFKEIQSLIHVK 199 (345)
T ss_dssp THHHHHHHHHHHHTTCCH----HHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCC-B--CCHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-C--ccHHHHHHHhCCC
Confidence 456777788878887764 46667888877766544455688999999999999986642 1 1223355668999
Q ss_pred HHHHHHHHHHHHHHHh
Q 020177 256 KEKIISCYRLMQRLVL 271 (330)
Q Consensus 256 ~e~l~~c~~~l~~l~~ 271 (330)
+.+|-.+++.|.+.+.
T Consensus 200 ~keigr~~k~l~~~L~ 215 (345)
T 4bbr_M 200 TKEFGKTLNIMKNILR 215 (345)
T ss_dssp TTHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999976443
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=89.22 E-value=0.28 Score=45.93 Aligned_cols=87 Identities=13% Similarity=0.054 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhchhcccCccHHHHHHHHHHHHHhhCCCCCCCCccccchhccCCCHH
Q 020177 178 PFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEIPNLSLVNPEHAESWCDGLSKE 257 (330)
Q Consensus 178 p~~Fl~~fl~~l~~~~~~~~~~~~~a~~ll~~~l~d~~~l~~~PS~iAaAai~~A~~~~~~~~~~~~~~~l~~~~~~~~e 257 (330)
.+.+|..+...++.++ .+.+.|..+...++....+-+.+...|||||||+|.+..+. + ..-..+...+++++.
T Consensus 129 a~~~I~~~~~~L~Lp~----~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-p--rtl~ei~~~~~v~~k 201 (345)
T 3k7a_M 129 AFAKITMLCDAAELPK----IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-A--RTFKEIQSLIHVKTK 201 (345)
T ss_dssp HHHHHHHHHHHTTCCH----HHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-S--CCHHHHHHSSSCCSH
T ss_pred HHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-C--ccHHHHHHHHCCCHH
Confidence 5577777777777663 46666777777776555566788999999999999875442 1 122345667889999
Q ss_pred HHHHHHHHHHHHHh
Q 020177 258 KIISCYRLMQRLVL 271 (330)
Q Consensus 258 ~l~~c~~~l~~l~~ 271 (330)
+|..+++.|.+.+.
T Consensus 202 eIgr~~~~l~~~L~ 215 (345)
T 3k7a_M 202 EFGKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988765
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=86.87 E-value=3.5 Score=35.93 Aligned_cols=87 Identities=9% Similarity=0.043 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhchhcccC-ccHHHHHHHHHHHHHhhCCCCCCCCccccchhc-----
Q 020177 178 PFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLE-YRPSSIAAAAILCAANEIPNLSLVNPEHAESWC----- 251 (330)
Q Consensus 178 p~~Fl~~fl~~l~~~~~~~~~~~~~a~~ll~~~l~d~~~l~-~~PS~iAaAai~~A~~~~~~~~~~~~~~~l~~~----- 251 (330)
..++|.....+++... .....|..++...+....+.+ +.|-.||+||+++|.+.-+. +. .-. .+...
T Consensus 31 ~~~~i~~v~~~l~L~~----~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~-~~-~l~-d~~~~~~~~~ 103 (235)
T 1zp2_A 31 QWKVVQTFGDRLRLRQ----RVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEEC-PV-HIR-TICNEANDLW 103 (235)
T ss_dssp HHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTC-CC-CHH-HHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccC-cc-cHH-HHHHHHHHHc
Confidence 3466666666666653 345556677777776677888 99999999999999986542 11 111 12111
Q ss_pred ---cCCCHHHHHHHHHHHHHHHh
Q 020177 252 ---DGLSKEKIISCYRLMQRLVL 271 (330)
Q Consensus 252 ---~~~~~e~l~~c~~~l~~l~~ 271 (330)
..+++++|..+-..|.+-+.
T Consensus 104 ~~~~~~~~~~I~~~E~~iL~~L~ 126 (235)
T 1zp2_A 104 SLKVKLSRSNISEIEFEIISVLD 126 (235)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTT
T ss_pred cchhhccHHHHHHHHHHHHHHCC
Confidence 25789999999888877653
No 25
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=85.04 E-value=2.7 Score=37.10 Aligned_cols=87 Identities=9% Similarity=0.049 Sum_probs=59.1
Q ss_pred HHHHHHHHHhCCch----hHHHHHHHHHHHHhcCCCcCCCCCCchhHHHHHHhhhhhhhccccCCchh------hh-hHh
Q 020177 79 AWILKVQAYYNFLP----LTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLL------DL-QVE 147 (330)
Q Consensus 79 dWi~~v~~~~~l~~----~t~~lAv~~~DRfls~~~i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~------~l-~~~ 147 (330)
+++......++.+. +...+|..+++.-+.....-.. ....+|++|+++|+++-....|... .. ...
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~---~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~ 229 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQW---EPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF 229 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTS---CHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhcc---ChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh
Confidence 46666667777766 5778888888887766555444 5889999999999998654322211 11 010
Q ss_pred cccccccHHHHHHHHHHHHHHcC
Q 020177 148 GAKYIFETKTIRRMELLVLSVLD 170 (330)
Q Consensus 148 ~~~~~~~~~~I~~mE~~IL~~L~ 170 (330)
.+ .++.++|...-..|++...
T Consensus 230 ~~--~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 230 VQ--DVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp SS--SCCHHHHHHHHHHHHTTTS
T ss_pred cc--CCCHHHHHHHHHHHHHHHh
Confidence 11 4789999998888887654
No 26
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=83.91 E-value=20 Score=30.86 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCC---cCCCCCCchhHHHHHHhhhhhhhccccCCchhhhhHhcccccc
Q 020177 77 SVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRR---LPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIF 153 (330)
Q Consensus 77 lvdWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~---i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~~~~~~~ 153 (330)
+.+-|+.++.+-+++..++--||.+--.|.-... .... +-|=+|++|+.||+- +-..|.++.++...... .
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE---~q~dVAAAc~miAae-~~~~PiplaE~r~lD~s--L 88 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVE---RQPDVAAACLMIAAE-EAQQPLPLAEVRCLDSS--L 88 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCC---CHHHHHHHHHHHHHH-HTTCCCCHHHHHHHCTT--C
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhccccc---ccHHHHHHHHHHHHH-HcCCCccHHHHHHHhhh--h
Confidence 4556688999999999999999999988876432 2333 578899999999997 34556777777544332 2
Q ss_pred cHHHHHHHHHHHHHHcCc-----cccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhchhcccCccHHHHHHHH
Q 020177 154 ETKTIRRMELLVLSVLDW-----RLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAAA 228 (330)
Q Consensus 154 ~~~~I~~mE~~IL~~L~w-----~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~a~~ll~~~l~d~~~l~~~PS~iAaAa 228 (330)
..-++.+. .|+..|+- +|...-.-..|.+|+.+++..- ....-.|..++...-.--.+..+---.--.-|
T Consensus 89 ~Dvelrr~--Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~---s~Y~p~C~rL~~ai~~ve~LA~~~~~drii~A 163 (260)
T 3h4c_A 89 GDVELRRA--DIVRELHLEDSERRLRDTFADNLLVKYILKLGLQV---SLYLPHCKRLLTALGRVEALAGLTVADRVTTA 163 (260)
T ss_dssp CCHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCH---HHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHH
T ss_pred hHHHHHHH--HHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccch---hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 32333333 45566654 2222233445566667776642 12223355554443333334555555555566
Q ss_pred HHHHHh
Q 020177 229 ILCAAN 234 (330)
Q Consensus 229 i~~A~~ 234 (330)
+++|+.
T Consensus 164 lLLArT 169 (260)
T 3h4c_A 164 LLLART 169 (260)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 778875
No 27
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=81.75 E-value=2.7 Score=37.96 Aligned_cols=82 Identities=11% Similarity=0.092 Sum_probs=56.0
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHhcCCCcCCCCCCchhHHHHHHhhhhhhhccccCCchhhhhHhcccccccHHHH
Q 020177 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTI 158 (330)
Q Consensus 79 dWi~~v~~~~~l~~~t~~lAv~~~DRfls~~~i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~~~~~~~~~~~I 158 (330)
++|.+....++.+..+..+|..++..-+....+-.. ....+|++|+++|+++..... ... .. ...++.++|
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~---~Ps~IAaAaiylA~~~~~~~~---~~W-~~--~~~~~~~~l 229 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLY---PPFMIALACLHVACVVQQKDA---RQW-FA--ELSVDMEKI 229 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHS---CHHHHHHHHHHHHHHHTTCCC---HHH-HH--TSCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhcc---CHHHHHHHHHHHHHHHcCCCh---hhH-HH--HHCCCHHHH
Confidence 456666677788888899999999887654433333 578899999999999865422 122 11 134677888
Q ss_pred HHHHHHHHHHc
Q 020177 159 RRMELLVLSVL 169 (330)
Q Consensus 159 ~~mE~~IL~~L 169 (330)
...-..|++..
T Consensus 230 ~~~~~~il~ly 240 (285)
T 3rgf_B 230 LEIIRVILKLY 240 (285)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87777776653
No 28
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=81.64 E-value=5.9 Score=34.84 Aligned_cols=86 Identities=13% Similarity=0.060 Sum_probs=56.0
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHhc-CCCcCCCCCCchhHHHHHHhhhhhhhccccCCchhh---hh-Hhcccccc
Q 020177 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLY-SRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLD---LQ-VEGAKYIF 153 (330)
Q Consensus 79 dWi~~v~~~~~l~~~t~~lAv~~~DRfls-~~~i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~~---l~-~~~~~~~~ 153 (330)
+++......++.+.+...+|..++..-+. ..-.-.. ....+|++|+++|+++-....|...+ .. .... .+
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~---~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~--~~ 222 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQY---KPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDP--TV 222 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTS---CHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCS--SC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcC---CHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCC--CC
Confidence 35555666778888888888888855442 2222233 57899999999999996544332111 11 1111 36
Q ss_pred cHHHHHHHHHHHHHHc
Q 020177 154 ETKTIRRMELLVLSVL 169 (330)
Q Consensus 154 ~~~~I~~mE~~IL~~L 169 (330)
+.++|...-..|+..+
T Consensus 223 ~~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 223 TLELLDELTHEFLQIL 238 (257)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8899999888888764
No 29
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=79.00 E-value=4.9 Score=37.61 Aligned_cols=86 Identities=13% Similarity=0.054 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHhcCCC-cCCCCCCchhHHHHHHhhhhhhhccccCCchh---hhhHhcccccccH
Q 020177 80 WILKVQAYYNFLPLTSYLSVNYMDRFLYSRR-LPDNNGWPWQLLSVACLSLAAKMEETVVPSLL---DLQVEGAKYIFET 155 (330)
Q Consensus 80 Wi~~v~~~~~l~~~t~~lAv~~~DRfls~~~-i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~---~l~~~~~~~~~~~ 155 (330)
||......++.+.++..+|.+++..-+.... .-.. ....+|++|+++|+++-....|... ... ..-.-.++.
T Consensus 156 fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y---~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~-~~~~~~vt~ 231 (358)
T 2pk2_A 156 HVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQY---TPPVVACVCIHLACKWSNWEIPVSTDGKHWW-EYVDATVTL 231 (358)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTS---CHHHHTTTTTTTHHHHTTCCCCCCSSSCCTT-TTSCSSCCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhcc---CHHHHHHHHHHHHHHHhCCCCCCCccccchH-HHHhccCCH
Confidence 5555566777888888889888866553222 2233 5789999999999999664433211 110 001113688
Q ss_pred HHHHHHHHHHHHHc
Q 020177 156 KTIRRMELLVLSVL 169 (330)
Q Consensus 156 ~~I~~mE~~IL~~L 169 (330)
++|...-..|+..+
T Consensus 232 ~~l~~i~~~il~~y 245 (358)
T 2pk2_A 232 ELLDELTHEFLQIL 245 (358)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988888765
No 30
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=72.52 E-value=15 Score=32.13 Aligned_cols=85 Identities=14% Similarity=0.070 Sum_probs=52.3
Q ss_pred HHHHHHHHHhCCchhHH----HHHHHHHHHHhcCCCcCCCCCCchhHHHHHHhhhhhhhccccCCc----hhhhhHhccc
Q 020177 79 AWILKVQAYYNFLPLTS----YLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPS----LLDLQVEGAK 150 (330)
Q Consensus 79 dWi~~v~~~~~l~~~t~----~lAv~~~DRfls~~~i~~~~~~~lqLla~aCL~LAsK~eE~~~p~----l~~l~~~~~~ 150 (330)
+|+......++.+.++. ..|..+++.-+....+-.. ..-.+|++|+++|.+.....+.. ...+... +
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~---~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~-t- 228 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALL---SPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSI-L- 228 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTS---CHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHH-H-
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhcc---CHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH-H-
Confidence 34444455566666552 3566777766655555444 57899999999999985222212 3444322 3
Q ss_pred ccccHHHHHHHHHHHHHHc
Q 020177 151 YIFETKTIRRMELLVLSVL 169 (330)
Q Consensus 151 ~~~~~~~I~~mE~~IL~~L 169 (330)
.++.++|...=..|.+.+
T Consensus 229 -g~~~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 229 -NFSTNTVRTVKDQVSEAF 246 (254)
T ss_dssp -TCCHHHHHHHHHHHHHHH
T ss_pred -CcCHHHHHHHHHHHHHHH
Confidence 367888888777776654
No 31
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=71.51 E-value=29 Score=31.71 Aligned_cols=84 Identities=13% Similarity=0.040 Sum_probs=51.7
Q ss_pred HHHHHHHHhcC--CCCChHHHHHHHHHHHHHHhhchhcccCccHHHHHHHHHHHHHhhCCCCCCCCccccchhccC----
Q 020177 180 SFIYFFACKLD--PTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEIPNLSLVNPEHAESWCDG---- 253 (330)
Q Consensus 180 ~Fl~~fl~~l~--~~~~~~~~~~~~a~~ll~~~l~d~~~l~~~PS~iAaAai~~A~~~~~~~~~~~~~~~l~~~~~---- 253 (330)
.+|..+..+++ .. +.....|..++...+....+..+.|-.||+||+++|.+.-+... ...+ +.....
T Consensus 62 ~~I~ev~~~l~~~Lp----~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~--~l~d-~v~~~~~~p~ 134 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMP----RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV--SSPQ-FVGNLRESPL 134 (323)
T ss_dssp HHHHHHHHHCTTTCC----HHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCC--CHHH-HGGGSSSCHH
T ss_pred HHHHHHHHHHcCCCC----HHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCC--CHHH-HHHHhccChh
Confidence 34444545555 33 34555677777777777778899999999999999998654311 1111 211222
Q ss_pred ---CCHHHHHHHHHHHHHHH
Q 020177 254 ---LSKEKIISCYRLMQRLV 270 (330)
Q Consensus 254 ---~~~e~l~~c~~~l~~l~ 270 (330)
+.+++|..+-..|.+-+
T Consensus 135 ~~~~~~~~Il~~E~~iL~~L 154 (323)
T 1jkw_A 135 GQEKALEQILEYELLLIQQL 154 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHC
Confidence 22567777776666544
No 32
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=71.33 E-value=18 Score=31.80 Aligned_cols=86 Identities=8% Similarity=-0.099 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhCCchhH----HHHHHHHHHHHhcCCCcCCCCCCchhHHHHHHhhhhhhhccccC----C-chhhhhHhc
Q 020177 78 VAWILKVQAYYNFLPLT----SYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVV----P-SLLDLQVEG 148 (330)
Q Consensus 78 vdWi~~v~~~~~l~~~t----~~lAv~~~DRfls~~~i~~~~~~~lqLla~aCL~LAsK~eE~~~----p-~l~~l~~~~ 148 (330)
.+|+......++.+.++ ..+|..+++.-+....+-.. ..-.+|++|+++|.+.-...+ + -...+...
T Consensus 152 ~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~---~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~- 227 (257)
T 1g3n_C 152 TDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSL---PASIISAAGCALLVPANVIPQDTHSGGVVPQLASI- 227 (257)
T ss_dssp HHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGS---CHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHH-
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCc---CHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHH-
Confidence 34555566666766655 24567777766655554444 578899999999999865321 1 22333221
Q ss_pred ccccccHHHHHHHHHHHHHHc
Q 020177 149 AKYIFETKTIRRMELLVLSVL 169 (330)
Q Consensus 149 ~~~~~~~~~I~~mE~~IL~~L 169 (330)
+ .++.++|...=..|.+.+
T Consensus 228 t--~~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 228 L--GCDVSVLQAAVEQILTSV 246 (257)
T ss_dssp H--TCCHHHHHHHHHHHHHHH
T ss_pred H--CcCHHHHHHHHHHHHHHH
Confidence 2 367888887766666543
No 33
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=68.92 E-value=18 Score=31.92 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=43.0
Q ss_pred HHHHHHHhhchhcccCccHHHHHHHHHHHHHhhCCCCCCCCccccchhcc--CCCHHHHHHHHHHHHHHHh
Q 020177 203 ATKIILSNIQEASFLEYRPSSIAAAAILCAANEIPNLSLVNPEHAESWCD--GLSKEKIISCYRLMQRLVL 271 (330)
Q Consensus 203 a~~ll~~~l~d~~~l~~~PS~iAaAai~~A~~~~~~~~~~~~~~~l~~~~--~~~~e~l~~c~~~l~~l~~ 271 (330)
|..+++..+....+....+-.+|+||+++|.+.-+.++. . .+.+...+ .|++++|.++-..|.+-+.
T Consensus 81 Av~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~-~-~~~~~~~~~~~~~~~eI~~mE~~IL~~L~ 149 (271)
T 2w96_A 81 AMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPL-T-AEKLCIYTDNSIRPEELLQMELLLVNKLK 149 (271)
T ss_dssp HHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCC-C-HHHHHHHTTTSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCC-C-HHHHHHHhcCCCCHHHHHHHHHHHHHHCC
Confidence 444444444444455678899999999999986554321 1 11223333 4899999999888877654
No 34
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=68.47 E-value=19 Score=31.79 Aligned_cols=86 Identities=12% Similarity=0.008 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhchhcccCccHHHHHHHHHHHHHhhCCCCCCCCccccchhcc--CCCHH
Q 020177 180 SFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEIPNLSLVNPEHAESWCD--GLSKE 257 (330)
Q Consensus 180 ~Fl~~fl~~l~~~~~~~~~~~~~a~~ll~~~l~d~~~l~~~PS~iAaAai~~A~~~~~~~~~~~~~~~l~~~~--~~~~e 257 (330)
+|+......++.. ......|..+++..+....+-...+-.+|+||+++|.+.-+..+. . .+.+...+ .|+++
T Consensus 43 ~wl~~v~~~~~l~----~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p-~-~~d~~~~~~~~~~~~ 116 (269)
T 2b9r_A 43 DWLVQVQMKFRLL----QETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPP-E-IGDFAFVTDNTYTKH 116 (269)
T ss_dssp HHHHHHHHHTTCC----HHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCC-C-HHHHHHHTCSSSCHH
T ss_pred HHHHHHHHHhCCC----HHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCc-c-HHHHHHHhcCCCCHH
Confidence 4444444444443 233334566666666555666788999999999999986543221 1 12233333 48999
Q ss_pred HHHHHHHHHHHHHh
Q 020177 258 KIISCYRLMQRLVL 271 (330)
Q Consensus 258 ~l~~c~~~l~~l~~ 271 (330)
+|.++-..|.+.+.
T Consensus 117 eI~~mE~~IL~~L~ 130 (269)
T 2b9r_A 117 QIRQMEMKILRALN 130 (269)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 99999888877653
No 35
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=66.34 E-value=27 Score=31.65 Aligned_cols=67 Identities=10% Similarity=-0.001 Sum_probs=41.6
Q ss_pred HHHHHHHhhchhcccCccHHHHHHHHHHHHHhhCCCCCCCCccccchhcc--CCCHHHHHHHHHHHHHHHh
Q 020177 203 ATKIILSNIQEASFLEYRPSSIAAAAILCAANEIPNLSLVNPEHAESWCD--GLSKEKIISCYRLMQRLVL 271 (330)
Q Consensus 203 a~~ll~~~l~d~~~l~~~PS~iAaAai~~A~~~~~~~~~~~~~~~l~~~~--~~~~e~l~~c~~~l~~l~~ 271 (330)
|..+++..+....+....+-.+|++|+++|.+.-+..+. . .+.+...+ .|++++|.++-..|.+-+.
T Consensus 95 Av~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~-~-~~~l~~~~~~~~~~~~i~~mE~~IL~~L~ 163 (306)
T 3g33_B 95 AMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPL-T-IEKLCIYTDHAVSPRQLRDWEVLVLGKLK 163 (306)
T ss_dssp HHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCC-C-TTHHHHHTTTSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCC-C-HHHHHHHhccCccHHHHHHHHHHHHHHcC
Confidence 334444444444456678899999999999985443321 1 11233333 4788999888877766553
No 36
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=61.74 E-value=16 Score=32.05 Aligned_cols=84 Identities=7% Similarity=-0.076 Sum_probs=52.1
Q ss_pred HHHHHHHHHhCCch-hHHHHHHHHHHHHhcCCC-cCCCCCCchhHHHHHHhhhhhhhccccCCchhhhhHhcccccccHH
Q 020177 79 AWILKVQAYYNFLP-LTSYLSVNYMDRFLYSRR-LPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETK 156 (330)
Q Consensus 79 dWi~~v~~~~~l~~-~t~~lAv~~~DRfls~~~-i~~~~~~~lqLla~aCL~LAsK~eE~~~p~l~~l~~~~~~~~~~~~ 156 (330)
+|+......++.+. .+..+|-.+++.-+.... +-.. ....+|++|+++|.+.-.. ++-...+... + .++.+
T Consensus 141 ~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~---~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~-~--g~~~~ 213 (260)
T 2cch_B 141 QFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKY---LPSVIAGAAFHLALYTVTG-QSWPESLIRK-T--GYTLE 213 (260)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTS---CHHHHHHHHHHHHHHHHHS-CCSCHHHHHH-H--CCCHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCC---CHHHHHHHHHHHHHHHhCC-CcchHHHHHH-h--CcCHH
Confidence 45555556666654 566677777776554333 3333 4788999999999997554 2223334322 2 36788
Q ss_pred HHHHHHHHHHHHc
Q 020177 157 TIRRMELLVLSVL 169 (330)
Q Consensus 157 ~I~~mE~~IL~~L 169 (330)
+|...=..|.+.+
T Consensus 214 ~i~~~~~~l~~~~ 226 (260)
T 2cch_B 214 SLKPCLMDLHQTY 226 (260)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888766666644
No 37
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=47.99 E-value=61 Score=28.76 Aligned_cols=66 Identities=11% Similarity=0.108 Sum_probs=41.2
Q ss_pred HHHHHHHhhch-hcccCccHHHHHHHHHHHHHhhCCCCCCCCccccchhcc--CCCHHHHHHHHHHHHHHH
Q 020177 203 ATKIILSNIQE-ASFLEYRPSSIAAAAILCAANEIPNLSLVNPEHAESWCD--GLSKEKIISCYRLMQRLV 270 (330)
Q Consensus 203 a~~ll~~~l~d-~~~l~~~PS~iAaAai~~A~~~~~~~~~~~~~~~l~~~~--~~~~e~l~~c~~~l~~l~ 270 (330)
|..+++..+.- ........-.+|+||+++|.+.-+..+. . -+.+...+ .|++++|.++-..|.+.+
T Consensus 74 Av~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p-~-l~~~~~i~~~~~~~~ei~~mE~~IL~~L 142 (283)
T 1w98_B 74 AQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPP-K-LHQFAYVTDGACSGDEILTMELMIMKAL 142 (283)
T ss_dssp HHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCC-C-HHHHHHTTTTSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCC-c-HHHHHHHHcCCCCHHHHHHHHHHHHHHc
Confidence 33444443332 2345677889999999999986543221 1 12233333 488999999988887655
No 38
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=40.17 E-value=1e+02 Score=26.90 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=39.5
Q ss_pred HHHHHHHhhchhcccCccHHHHHHHHHHHHHhhCCCCCCCCccccchhc--cCCCHHHHHHHHHHHHHHH
Q 020177 203 ATKIILSNIQEASFLEYRPSSIAAAAILCAANEIPNLSLVNPEHAESWC--DGLSKEKIISCYRLMQRLV 270 (330)
Q Consensus 203 a~~ll~~~l~d~~~l~~~PS~iAaAai~~A~~~~~~~~~~~~~~~l~~~--~~~~~e~l~~c~~~l~~l~ 270 (330)
|..+++.-+.....-....-.+|++|+++|.+.-+..+. . .+.+... -.|+.++|.+.=..|.+.+
T Consensus 73 Av~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~-~-~~~l~~~~~~~yt~~~i~~mE~~IL~~L 140 (252)
T 1f5q_B 73 AVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPI-K-ATQLAYLCGGATTADKLLTLEVKSLDTL 140 (252)
T ss_dssp HHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCC-C-HHHHHHHHCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCC-C-HHHHHHHhCCCCCHHHHHHHHHHHHHHC
Confidence 334444444333444567788999999999985543321 1 1122222 3578888888777776654
No 39
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=25.85 E-value=27 Score=19.55 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=8.2
Q ss_pred CCCCCChhhhccc
Q 020177 304 SSSSSPTYKRRKL 316 (330)
Q Consensus 304 ~~~~~~~~kr~~~ 316 (330)
+.++.|+.|+||.
T Consensus 11 s~~sTPPKkKrk~ 23 (26)
T 1q1s_A 11 AQHAAPPKKKRKV 23 (26)
T ss_pred ccccCCCcccccc
Confidence 4455677677774
No 40
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=25.38 E-value=53 Score=18.52 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHcCcc
Q 020177 155 TKTIRRMELLVLSVLDWR 172 (330)
Q Consensus 155 ~~~I~~mE~~IL~~L~w~ 172 (330)
.++|..+|..|-+.|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 589999999999999886
No 41
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=21.14 E-value=1.5e+02 Score=22.10 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCCCCCCccccchhccCCCHHHHHHHHHHHHHHHhh
Q 020177 225 AAAAILCAANEIPNLSLVNPEHAESWCDGLSKEKIISCYRLMQRLVLN 272 (330)
Q Consensus 225 AaAai~~A~~~~~~~~~~~~~~~l~~~~~~~~e~l~~c~~~l~~l~~~ 272 (330)
++||+|.|.+....... ..-+...+|+++.+....+..+.++...
T Consensus 49 ~aaA~~~acr~~K~kVd---K~KL~~~s~lk~~~f~~l~~~~e~~~~~ 93 (95)
T 3m03_A 49 TSAALLSACKILKLKVD---KNKMVATSGVKKAIFDRLCKQLEKIGQQ 93 (95)
T ss_dssp HHHHHHHHHHHTTCCCC---HHHHHHTTCBCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCCC---HHHHHHHHCCCHHHHHHHHHHHHHHHHh
Done!