BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020180
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 135/295 (45%), Gaps = 27/295 (9%)
Query: 4 DFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDV 63
D +P ID+ + + +D K+ E+ +++L KA + G ++ HGIP L+ V
Sbjct: 42 DGPQVPTIDLKNI--ESDDEKIREN-----CIEELKKASLDWGVMHLINHGIPADLMERV 94
Query: 64 KNITQKFFDLPYEEKIKIKLTPATG-YRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYG 122
K ++FF L EEK K ATG +GY G + E D + +
Sbjct: 95 KKAGEEFFSLSVEEKEKYANDQATGKIQGY---GSKLANNASGQLEWEDYF------FHL 145
Query: 123 ALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAG-- 180
A + + WP P ++ EY L+ K+ + +++ LG P E G
Sbjct: 146 AYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLE 205
Query: 181 DAFWVLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVRNMSGEWI 240
+ ++I YP +PE +G AHTD LT + + + L++ G+W+
Sbjct: 206 ELLLQMKINYYPKCP------QPELALGVEAHTDVSALTFILHNM-VPGLQLF-YEGKWV 257
Query: 241 SAPPIPGTFVCNIGDMLKIYSNGLYESTLHRVVNSSPKYRVCVAYFYETNFDAAV 295
+A +P + V +IGD L+I SNG Y+S LHR + + K R+ A F E D V
Sbjct: 258 TAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 312
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 135/295 (45%), Gaps = 27/295 (9%)
Query: 4 DFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDV 63
D +P ID+ + + +D K+ E+ +++L KA + G ++ HGIP L+ V
Sbjct: 43 DGPQVPTIDLKNI--ESDDEKIREN-----CIEELKKASLDWGVMHLINHGIPADLMERV 95
Query: 64 KNITQKFFDLPYEEKIKIKLTPATG-YRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYG 122
K ++FF L EEK K ATG +GY G + E D + +
Sbjct: 96 KKAGEEFFSLSVEEKEKYANDQATGKIQGY---GSKLANNASGQLEWEDYF------FHL 146
Query: 123 ALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAG-- 180
A + + WP P ++ EY L+ K+ + +++ LG P E G
Sbjct: 147 AYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLE 206
Query: 181 DAFWVLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVRNMSGEWI 240
+ ++I YP +PE +G AHTD LT + + + L++ G+W+
Sbjct: 207 ELLLQMKINYYPKCP------QPELALGVEAHTDVSALTFILHNM-VPGLQLF-YEGKWV 258
Query: 241 SAPPIPGTFVCNIGDMLKIYSNGLYESTLHRVVNSSPKYRVCVAYFYETNFDAAV 295
+A +P + V +IGD L+I SNG Y+S LHR + + K R+ A F E D V
Sbjct: 259 TAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 313
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 27/295 (9%)
Query: 4 DFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDV 63
D +P ID+ + + +D K+ E+ +++L KA + G ++ HGIP L V
Sbjct: 43 DGPQVPTIDLKNI--ESDDEKIREN-----CIEELKKASLDWGVXHLINHGIPADLXERV 95
Query: 64 KNITQKFFDLPYEEKIKIKLTPATG-YRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYG 122
K ++FF L EEK K ATG +GY G + E D + +
Sbjct: 96 KKAGEEFFSLSVEEKEKYANDQATGKIQGY---GSKLANNASGQLEWEDYF------FHL 146
Query: 123 ALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAGDA 182
A + + WP P ++ EY L+ K+ + +++ LG P E G
Sbjct: 147 AYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLE 206
Query: 183 FWVL--RIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVRNMSGEWI 240
+L +I YP +PE +G AHTD LT + + + L++ G+W+
Sbjct: 207 ELLLQXKINYYPKCP------QPELALGVEAHTDVSALTFILHNX-VPGLQLF-YEGKWV 258
Query: 241 SAPPIPGTFVCNIGDMLKIYSNGLYESTLHRVVNSSPKYRVCVAYFYETNFDAAV 295
+A +P + V +IGD L+I SNG Y+S LHR + + K R+ A F E D V
Sbjct: 259 TAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 313
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 117/274 (42%), Gaps = 14/274 (5%)
Query: 32 SQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPATGYRG 91
++ ++L + + GF + + + ++ I+ + + FF LP E K + G RG
Sbjct: 20 TRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKG-GARG 78
Query: 92 YQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNL 151
Y G KG D ++ + + ++ G + N WP P F+ + N
Sbjct: 79 YIPFGVETAKGA-DHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNS 137
Query: 152 CTDLSRKIMRGIALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAKDQKKPENNIGCGA 211
K++ IA L +F D VLR++ YP + K + GA
Sbjct: 138 LDGXGGKVLEAIATYLKLE-RDFFKPTVQDGNSVLRLLHYPPIP------KDATGVRAGA 190
Query: 212 HTDYGLLTLVNQDDDITALEVRNMSGEWISAPPIPGTFVCNIGDMLKIYSNGLYESTLHR 271
H D +TL+ ++ LEV + G+W+ P PG V NIGD L+ +N + ST+HR
Sbjct: 191 HGDINTITLLLGAEE-GGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR 249
Query: 272 VVNSSPKY----RVCVAYFYETNFDAAVEPLDIC 301
VVN P+ R +F D ++ L C
Sbjct: 250 VVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNC 283
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 121/287 (42%), Gaps = 55/287 (19%)
Query: 41 ACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPATGYRGYQRIG---- 96
AC+ GFF + HGIP + + V+ T+ + E++ K +L + G Q
Sbjct: 27 ACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFK-ELVASKALEGVQAEVTDXD 85
Query: 97 ------------ENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRAL 144
NI++ +PD+ E Y+E+ L K L
Sbjct: 86 WESTFFLKHLPISNISE-VPDLDEE---YREVXRDFAKRLEK-----------------L 124
Query: 145 MEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAKDQKKPE 204
EE ++L + + L G F G + + + ++ YP KP+
Sbjct: 125 AEELLDL-------LCENLGLEKGYLKNAFYGSKGPN--FGTKVSNYPPCP------KPD 169
Query: 205 NNIGCGAHTDYGLLTLVNQDDDITALEVRNMSGEWISAPPIPGTFVCNIGDMLKIYSNGL 264
G AHTD G + L+ QDD ++ L++ G+WI PP + V N+GD L++ +NG
Sbjct: 170 LIKGLRAHTDAGGIILLFQDDKVSGLQLLK-DGQWIDVPPXRHSIVVNLGDQLEVITNGK 228
Query: 265 YESTLHRVVNSSPKYRVCVAYFYETNFDAAVEPL-DICKQRTGETKQ 310
Y+S HRV+ R +A FY DA + P + ++ E KQ
Sbjct: 229 YKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQ 275
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 135/323 (41%), Gaps = 62/323 (19%)
Query: 7 SIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNI 66
++P IDVSPL + KM +V +Q+D A ++ GFFY HGI +V+ +
Sbjct: 8 NVPKIDVSPLFGDDQAAKM-------RVAQQIDAASRDTGFFYAVNHGI------NVQRL 54
Query: 67 TQKFFDLPYEEKIKIKLTPATGY----RGYQRIGENITKGIPDMHEAIDCYKEIQEGMY- 121
+QK ++ + +TP + R Y + ++ + + +I K ++ Y
Sbjct: 55 SQK------TKEFHMSITPEEKWDLAIRAYNKEHQDQVRA--GYYLSIPGKKAVESFCYL 106
Query: 122 -----------GALGKTMEGCNQWP--LNPPNFRALMEEYVNLCTDLSRKIMRGIALALG 168
A T E N WP P F+ E+Y LS +++G ALALG
Sbjct: 107 NPNFTPDHPRIQAKTPTHE-VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALG 165
Query: 169 GSP-FEFEGVRAGDAFWVLRIIGYPGLSGAKDQKKPENNIGCGA---------HTDYGLL 218
F + D + +I YP L PE I A H D L+
Sbjct: 166 KEENFFARHFKPDDTLASVVLIRYPYLD-----PYPEAAIKTAADGTKLSFEWHEDVSLI 220
Query: 219 TLVNQDDDITALEVRNMSGEWISAPPIPGTFVCNIGDMLKIYSNGLYESTLHRV--VNSS 276
T++ Q ++ L+V +G G ++ N G + +N Y++ +HRV VN+
Sbjct: 221 TVLYQ-SNVQNLQVETAAGYQDIEADDTG-YLINCGSYMAHLTNNYYKAPIHRVKWVNAE 278
Query: 277 PKYRVCVAYFYETNFDAAVEPLD 299
R + +F +D+ ++P D
Sbjct: 279 ---RQSLPFFVNLGYDSVIDPFD 298
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 135/323 (41%), Gaps = 62/323 (19%)
Query: 7 SIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNI 66
++P IDVSPL + KM +V +Q+D A ++ GFFY HGI +V+ +
Sbjct: 8 NVPKIDVSPLFGDDQAAKM-------RVAQQIDAASRDTGFFYAVNHGI------NVQRL 54
Query: 67 TQKFFDLPYEEKIKIKLTPATGY----RGYQRIGENITKGIPDMHEAIDCYKEIQEGMY- 121
+QK ++ + +TP + R Y + ++ + + +I K ++ Y
Sbjct: 55 SQK------TKEFHMSITPEEKWDLAIRAYNKEHQDQVRA--GYYLSIPGKKAVESFCYL 106
Query: 122 -----------GALGKTMEGCNQWP--LNPPNFRALMEEYVNLCTDLSRKIMRGIALALG 168
A T E N WP P F+ E+Y LS +++G ALALG
Sbjct: 107 NPNFTPDHPRIQAKTPTHE-VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALG 165
Query: 169 GSP-FEFEGVRAGDAFWVLRIIGYPGLSGAKDQKKPENNIGCGA---------HTDYGLL 218
F + D + +I YP L PE I A H D L+
Sbjct: 166 KEENFFARHFKPDDTLASVVLIRYPYLD-----PYPEAAIKTAADGTKLSFEWHEDVSLI 220
Query: 219 TLVNQDDDITALEVRNMSGEWISAPPIPGTFVCNIGDMLKIYSNGLYESTLHRV--VNSS 276
T++ Q ++ L+V +G G ++ N G + +N Y++ +HRV VN+
Sbjct: 221 TVLYQ-SNVQNLQVETAAGYQDIEADDTG-YLINCGSYMAHLTNNYYKAPIHRVKWVNAE 278
Query: 277 PKYRVCVAYFYETNFDAAVEPLD 299
R + +F +D+ ++P D
Sbjct: 279 ---RQSLPFFVNLGYDSVIDPFD 298
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 106/271 (39%), Gaps = 39/271 (14%)
Query: 28 DPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPAT 87
D + K+ ++ +E GF + H I + L+ + Q FF+ + +
Sbjct: 8 DYRAADSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRETHD 67
Query: 88 GYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEE 147
G+ + KG K+I+E + W P + RA +
Sbjct: 68 GF--FPASISETAKG--------HTVKDIKEYYH---------VYPWGRIPDSLRANILA 108
Query: 148 YVNLCTDLSRKIMRGIALALGGSPFEFEG--------VRAGDAFWVLRIIGYPGLSGAKD 199
Y L+ +++ I SP E + A +LRI+ YP +G ++
Sbjct: 109 YYEKANTLASELLEWIETY---SPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEE 165
Query: 200 QKKPENNIGCGAHTDYGLLTLVNQDDDITALEVRNMSGEWISAPPIPGTFVCNIGDMLKI 259
I AH D L+T++ ++ L+V+ G W+ P G + NIGD L+
Sbjct: 166 X----GAIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGNIIINIGDXLQE 220
Query: 260 YSNGLYESTLHRVVN----SSPKYRVCVAYF 286
S+G + ST HRV+N K R+ + F
Sbjct: 221 ASDGYFPSTSHRVINPEGTDKTKSRISLPLF 251
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 96/245 (39%), Gaps = 27/245 (11%)
Query: 37 QLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPA-TGYRGYQRI 95
+ + ++ G FY+ G+ ++ + K+I FF+ E + + +P T RG+ +
Sbjct: 21 EFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMRRGFTGL 80
Query: 96 GENITKGIPDMHEAID---CYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLC 152
T I + D CY ++G N +P +F + +Y +
Sbjct: 81 ESESTAQITNTGSYSDYSMCY---------SMGT---ADNLFPSG--DFERIWTQYFDRQ 126
Query: 153 TDLSRKIMRGIALALGGSPFEFEGVRAG-DAFWVLRIIGYPGLSGAKDQKKPENNIGCGA 211
SR + R + A G P GV A D +LR +P + + + E +
Sbjct: 127 YTASRAVAREVLRATGTEP--DGGVEAFLDCEPLLRFRYFPQV--PEHRSAEEQPLRMAP 182
Query: 212 HTDYGLLTLVNQD---DDITALEVRNMSGEWISAPPIPGTFVCNIGDMLKIYSNGLYEST 268
H D ++TL+ Q + +L+ + G + P P + G + + + G ++
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQA-EVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAP 241
Query: 269 LHRVV 273
H V
Sbjct: 242 RHHVA 246
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 96/245 (39%), Gaps = 27/245 (11%)
Query: 37 QLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPA-TGYRGYQRI 95
+ + ++ G FY+ G+ ++ + K+I FF+ E + + +P T RG+ +
Sbjct: 21 EFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMRRGFTGL 80
Query: 96 GENITKGIPDMHEAID---CYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLC 152
T I + D CY ++G N +P +F + +Y +
Sbjct: 81 ESESTAQITNTGSYSDYSMCY---------SMGT---ADNLFPSG--DFERIWTQYFDRQ 126
Query: 153 TDLSRKIMRGIALALGGSPFEFEGVRAG-DAFWVLRIIGYPGLSGAKDQKKPENNIGCGA 211
SR + R + A G P GV A D +LR +P + + + E +
Sbjct: 127 YTASRAVAREVLRATGTEP--DGGVEAFLDCEPLLRFRYFPQV--PEHRSAEEQPLRMAP 182
Query: 212 HTDYGLLTLVNQD---DDITALEVRNMSGEWISAPPIPGTFVCNIGDMLKIYSNGLYEST 268
H D ++TL+ Q + +L+ + G + P P + G + + + G ++
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQA-EVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAP 241
Query: 269 LHRVV 273
H V
Sbjct: 242 RHHVA 246
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 96/245 (39%), Gaps = 27/245 (11%)
Query: 37 QLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPA-TGYRGYQRI 95
+ + ++ G FY+ G+ ++ + K+I FF+ E + + +P T RG+ +
Sbjct: 21 EFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMRRGFTGL 80
Query: 96 GENITKGIPDMHEAID---CYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLC 152
T I + D CY ++G N +P +F + +Y +
Sbjct: 81 ESESTAQITNTGSYSDYSMCY---------SMGT---ADNLFPSG--DFERIWTQYFDRQ 126
Query: 153 TDLSRKIMRGIALALGGSPFEFEGVRAG-DAFWVLRIIGYPGLSGAKDQKKPENNIGCGA 211
SR + R + A G P GV A D +LR +P + + + E +
Sbjct: 127 YTASRAVAREVLRATGTEP--DGGVEAFLDCEPLLRFRYFPQV--PEHRSAEEQPLRMAP 182
Query: 212 HTDYGLLTLVNQD---DDITALEVRNMSGEWISAPPIPGTFVCNIGDMLKIYSNGLYEST 268
H D ++TL+ Q + +L+ + G + P P + G + + + G ++
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQA-EVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAP 241
Query: 269 LHRVV 273
H V
Sbjct: 242 RHHVA 246
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 49/245 (20%), Positives = 96/245 (39%), Gaps = 27/245 (11%)
Query: 37 QLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPA-TGYRGYQRI 95
+ + ++ G FY+ G+ ++ + K++ FF+ E + + +P T RG+ +
Sbjct: 21 EFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFTGL 80
Query: 96 GENITKGIPDMHEAID---CYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLC 152
T I + D CY ++G N +P +F + +Y +
Sbjct: 81 ESESTAQITNTGSYSDYSMCY---------SMGT---ADNLFPSG--DFERIWTQYFDRQ 126
Query: 153 TDLSRKIMRGIALALGGSPFEFEGVRAG-DAFWVLRIIGYPGLSGAKDQKKPENNIGCGA 211
SR + R + A G P GV A D +LR +P + + + E +
Sbjct: 127 YTASRAVAREVLRATGTEP--DGGVEAFLDCEPLLRFRYFPQV--PEHRSAEEQPLRMAP 182
Query: 212 HTDYGLLTLVNQD---DDITALEVRNMSGEWISAPPIPGTFVCNIGDMLKIYSNGLYEST 268
H D ++TL+ Q + +L+ + G + P P + G + + + G ++
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQA-EVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAP 241
Query: 269 LHRVV 273
H V
Sbjct: 242 RHHVA 246
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 49/245 (20%), Positives = 96/245 (39%), Gaps = 27/245 (11%)
Query: 37 QLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPA-TGYRGYQRI 95
+ + ++ G FY+ G+ ++ + K++ FF+ E + + +P T RG+ +
Sbjct: 41 EFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFTGL 100
Query: 96 GENITKGIPDMHEAID---CYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLC 152
T I + D CY ++G N +P +F + +Y +
Sbjct: 101 ESESTAQITNTGSYSDYSMCY---------SMGT---ADNLFPSG--DFERIWTQYFDRQ 146
Query: 153 TDLSRKIMRGIALALGGSPFEFEGVRAG-DAFWVLRIIGYPGLSGAKDQKKPENNIGCGA 211
SR + R + A G P GV A D +LR +P + + + E +
Sbjct: 147 YTASRAVAREVLRATGTEP--DGGVEAFLDCEPLLRFRYFPQV--PEHRSAEEQPLRMAP 202
Query: 212 HTDYGLLTLVNQD---DDITALEVRNMSGEWISAPPIPGTFVCNIGDMLKIYSNGLYEST 268
H D ++TL+ Q + +L+ + G + P P + G + + + G ++
Sbjct: 203 HYDLSMVTLIQQTPCANGFVSLQA-EVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAP 261
Query: 269 LHRVV 273
H V
Sbjct: 262 RHHVA 266
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 214 DYGLLTLVNQDDDITALEVRNMSGEWISAPPIPGTFVCNIGDMLKIYSNGLYESTLHRV- 272
D G++T++ QD D E+ ++G + P P CN DM Y LH V
Sbjct: 195 DLGMVTILVQDTDTALKELEKVTGIQLLNTPAPLPTSCNPSDMSHGYVTVKPRVRLHFVE 254
Query: 273 VNSSPKYRVCVAY 285
+ S P +C +
Sbjct: 255 LGSGPAVCLCHGF 267
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 21 EDPKMAEDPGVSQVVKQLDKACKEAGFFYVK-GHGIP---ESLINDVKNITQKFF 71
++P E+ + + + +D+A KEA F Y K + IP +S I +++ Q F+
Sbjct: 675 DNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFY 729
>pdb|1SCF|A Chain A, Human Recombinant Stem Cell Factor
pdb|1SCF|B Chain B, Human Recombinant Stem Cell Factor
pdb|1SCF|C Chain C, Human Recombinant Stem Cell Factor
pdb|1SCF|D Chain D, Human Recombinant Stem Cell Factor
Length = 273
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 50 VKGHGIPESLI-NDVKNITQKFFDLPYEEKIKIKLTPATGYR-GYQRIGENITKGIPDMH 107
VK GI + + N+VK++T+ +LP + I +K P + I E + + +
Sbjct: 23 VKTEGICRNRVTNNVKDVTKLVANLPKDYXITLKYVPGXDVLPSHCWISEXVVQLSDSLT 82
Query: 108 EAIDCYKEIQEGM--YGALGK 126
+ +D + I EG+ Y + K
Sbjct: 83 DLLDKFSNISEGLSNYSIIDK 103
>pdb|1NY7|2 Chain 2, Cowpea Mosaic Virus (Cpmv)
pdb|2BFU|L Chain L, X-Ray Structure Of Cpmv Top Component
Length = 369
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 230 LEVRNMSGEWISAPPIPGTFVCNIGDMLKIYSNGLYESTLHRVVNSSPKYRVCVAYFYET 289
EV MS +I A TF+ G++ + G YES HR+V + C F +
Sbjct: 248 FEVTKMSSPYIKATV---TFLIAFGNLSDAF--GFYESFPHRIVQFAEVEEKCTLVFSQQ 302
Query: 290 NFDAA 294
F A
Sbjct: 303 EFVTA 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,884,398
Number of Sequences: 62578
Number of extensions: 481645
Number of successful extensions: 1129
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1101
Number of HSP's gapped (non-prelim): 21
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)