BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020181
(330 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255576109|ref|XP_002528949.1| ribonuclease z, chloroplast, putative [Ricinus communis]
gi|223531595|gb|EEF33423.1| ribonuclease z, chloroplast, putative [Ricinus communis]
Length = 361
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 264/362 (72%), Positives = 294/362 (81%), Gaps = 34/362 (9%)
Query: 1 MQLSLPTSPSKLPTIFPF-HPSS---IPKTPQSPHHLSLQSHV----GPLNALKSAGFLS 52
MQ SLP S SK P+IFPF HP S + H Q+H+ GP +LKS G+LS
Sbjct: 1 MQTSLPISHSKFPSIFPFNHPISHKPTTTRTTTEHQYPFQTHIKKPIGP-TSLKSTGYLS 59
Query: 53 SISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTR 112
+I R I+EEEEYRKARAAV+RKGIDLEGY+IEG+SIGG ETC+IIPE KCAFDIGRCP+R
Sbjct: 60 AIGRVIEEEEEYRKARAAVIRKGIDLEGYSIEGLSIGGQETCLIIPEFKCAFDIGRCPSR 119
Query: 113 AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV 172
AI QNFVFITH HLDHIGGLPMYVASRGLYNLKPPT+FVPP IKEDVEKLF+IHRS+G V
Sbjct: 120 AIHQNFVFITHAHLDHIGGLPMYVASRGLYNLKPPTVFVPPCIKEDVEKLFDIHRSMGQV 179
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEK 232
ELNL+LVALDVGETYE+RN++VVRPF+T HVIPSQGYVIY +RKKLKKQY HLKGKQIEK
Sbjct: 180 ELNLELVALDVGETYELRNNVVVRPFRTQHVIPSQGYVIYSVRKKLKKQYTHLKGKQIEK 239
Query: 233 LKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQ 292
LKKSGVEITDI+LSPEVAFTGDTT+E+ML+P NADALRAK+LITEATFLD+ SIEHA+Q
Sbjct: 240 LKKSGVEITDIMLSPEVAFTGDTTAEYMLDPHNADALRAKVLITEATFLDEGFSIEHARQ 299
Query: 293 HGHTHL-------------------------SEDIRQAVLKLQSKVSAKVVPLTEGFKSV 327
HGHTHL EDIRQAVLKLQSKVSAKVVPLTEGFKS
Sbjct: 300 HGHTHLLEIIENAEWIRNKSVLLTHFSSRYTVEDIRQAVLKLQSKVSAKVVPLTEGFKST 359
Query: 328 YT 329
Y+
Sbjct: 360 YS 361
>gi|224131708|ref|XP_002321158.1| predicted protein [Populus trichocarpa]
gi|222861931|gb|EEE99473.1| predicted protein [Populus trichocarpa]
Length = 366
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 256/366 (69%), Positives = 294/366 (80%), Gaps = 37/366 (10%)
Query: 1 MQLSLP--TSPS--KLPTIFPF-HPSSIPKTPQSPHHLSLQS-HVGPLNA------LKSA 48
MQ+S+P +SP K+P++FPF H SI P L+ ++ H PL +K++
Sbjct: 1 MQISIPLFSSPPNPKIPSLFPFQHLPSIFHGKGKPTTLTTRNFHFLPLKIKNKPFIVKAS 60
Query: 49 GFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGR 108
FLS I RAI+EEE+YRKARAAV+RKGIDL GY IEG+SIGG ETC+IIPE KCAFDIGR
Sbjct: 61 SFLSEIGRAIEEEEDYRKARAAVIRKGIDLGGYAIEGLSIGGQETCIIIPEFKCAFDIGR 120
Query: 109 CPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRS 168
CPTRAI QNFVFITH HLDHIGGLPMYVASRGLY+LKPPTIFVPP IK+DVEKLF+IHR+
Sbjct: 121 CPTRAIHQNFVFITHAHLDHIGGLPMYVASRGLYSLKPPTIFVPPCIKDDVEKLFDIHRA 180
Query: 169 LGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGK 228
+G VELN DLVALDVGETYE+RND+VVRPF+T HVIPSQGYVIY +RKKLKKQYIHLKGK
Sbjct: 181 MGQVELNFDLVALDVGETYELRNDVVVRPFRTQHVIPSQGYVIYSVRKKLKKQYIHLKGK 240
Query: 229 QIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIE 288
QIEKLKKSGVEITDIILSPEVAFTGDTT+E+ML+PRNADALRAK+LITEATFLD++ + E
Sbjct: 241 QIEKLKKSGVEITDIILSPEVAFTGDTTAEYMLDPRNADALRAKVLITEATFLDEDFTTE 300
Query: 289 HAQQHGHTHLS-------------------------EDIRQAVLKLQSKVSAKVVPLTEG 323
HA+Q GHTHL EDIR+AV KLQS+VSAKVVPLTEG
Sbjct: 301 HARQRGHTHLFEIIENAKWIRSKAILLTHFSSRYSIEDIREAVSKLQSRVSAKVVPLTEG 360
Query: 324 FKSVYT 329
FKS+Y+
Sbjct: 361 FKSMYS 366
>gi|449481110|ref|XP_004156084.1| PREDICTED: ribonuclease Z, chloroplastic-like [Cucumis sativus]
Length = 347
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 247/353 (69%), Positives = 288/353 (81%), Gaps = 31/353 (8%)
Query: 1 MQLSLPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSISRAIDE 60
MQ+S+P SP + P +FPFH + TP+ PH ++LQSH+ P+N+ + +G LS+I
Sbjct: 1 MQISIPISPLRPPQVFPFH-QPLLHTPK-PHGVALQSHLNPVNSFRDSGLLSTIGV---- 54
Query: 61 EEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVF 120
EEEYR+AR+ V RKG+DLEGY+IEG+S+GG ETCVIIPE KCAFDIGRCP+RAIQQNFVF
Sbjct: 55 EEEYRRARSQVNRKGVDLEGYSIEGISVGGQETCVIIPEFKCAFDIGRCPSRAIQQNFVF 114
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVA 180
ITH HLDHIGGLPMYVASRGLY+L PPT+F+P SIKEDVEKL EIHR++G VEL++DLVA
Sbjct: 115 ITHAHLDHIGGLPMYVASRGLYSLSPPTVFLPASIKEDVEKLLEIHRNMGQVELDVDLVA 174
Query: 181 LDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEI 240
LDVGETYEMRN++V R F+THHVIPSQGYVIY +RKKLKKQY+HLKGKQIEKLKKSGVEI
Sbjct: 175 LDVGETYEMRNNLVCRAFETHHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEI 234
Query: 241 TDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLS- 299
TD ILSPEVAFTGDTT +FML+PRNADALRAKILITEATFLD+ +SIEHA+QHGHTH+
Sbjct: 235 TDTILSPEVAFTGDTTPDFMLDPRNADALRAKILITEATFLDEAVSIEHARQHGHTHIFE 294
Query: 300 ------------------------EDIRQAVLKLQSKVSAKVVPLTEGFKSVY 328
EDIR+AV KLQS V+AKVVPLTEGFKS Y
Sbjct: 295 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSNVTAKVVPLTEGFKSEY 347
>gi|449444739|ref|XP_004140131.1| PREDICTED: ribonuclease Z, chloroplastic-like [Cucumis sativus]
Length = 347
Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/353 (69%), Positives = 287/353 (81%), Gaps = 31/353 (8%)
Query: 1 MQLSLPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSISRAIDE 60
MQ+S+P SP + P +FPFH + TP+ P ++LQSH+ P+N+ + +G LS+I
Sbjct: 1 MQISIPISPLRPPQVFPFH-QPLLHTPKPPG-VALQSHLNPVNSFRDSGLLSTIGV---- 54
Query: 61 EEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVF 120
EEEYR+AR+ V RKG+DLEGY+IEG+S+GG ETCVIIPE KCAFDIGRCP+RAIQQNFVF
Sbjct: 55 EEEYRRARSQVNRKGVDLEGYSIEGISVGGQETCVIIPEFKCAFDIGRCPSRAIQQNFVF 114
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVA 180
ITH HLDHIGGLPMYVASRGLY+L PPT+F+P SIKEDVEKL EIHR++G VEL++DLVA
Sbjct: 115 ITHAHLDHIGGLPMYVASRGLYSLSPPTVFLPASIKEDVEKLLEIHRNMGQVELDVDLVA 174
Query: 181 LDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEI 240
LDVGETYEMRN++V R F+THHVIPSQGYVIY +RKKLKKQY+HLKGKQIEKLKKSGVEI
Sbjct: 175 LDVGETYEMRNNLVCRAFETHHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEI 234
Query: 241 TDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLS- 299
TD ILSPEVAFTGDTT +FML+PRNADALRAKILITEATFLD+ +SIEHA+QHGHTH+
Sbjct: 235 TDTILSPEVAFTGDTTPDFMLDPRNADALRAKILITEATFLDEAVSIEHARQHGHTHIFE 294
Query: 300 ------------------------EDIRQAVLKLQSKVSAKVVPLTEGFKSVY 328
EDIR+AV KLQS ++AKVVPLTEGFKS Y
Sbjct: 295 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSNLTAKVVPLTEGFKSEY 347
>gi|356501243|ref|XP_003519435.1| PREDICTED: ribonuclease Z, chloroplastic-like [Glycine max]
Length = 354
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 245/356 (68%), Positives = 284/356 (79%), Gaps = 29/356 (8%)
Query: 1 MQLSLPTSPSKLPTIFPF-HPSSIPKTPQSPHHLSLQSHVGPLNALK-SAGFLSSISRAI 58
MQ+SL K P +FP HP PK P H +S QSHV N LK S+G+LS IS+AI
Sbjct: 1 MQISLSNLAFKTPQLFPIQHPIFPPKAPLYHHQVSTQSHVN--NVLKGSSGYLSEISKAI 58
Query: 59 DEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNF 118
D EE+YR AR+ V RK +DLEGY+IEG+S+GG ETC+IIPE KC FDIGRCP+RAIQQNF
Sbjct: 59 DHEEQYRLARSQVNRKVLDLEGYSIEGLSVGGQETCIIIPEFKCTFDIGRCPSRAIQQNF 118
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH HLDHIGGLPMYVASRGL+NLKPPT+FVPP IKEDVEKL +IHR++G VELN ++
Sbjct: 119 LFITHAHLDHIGGLPMYVASRGLFNLKPPTVFVPPCIKEDVEKLLDIHRTMGQVELNAEV 178
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGV 238
VALDVGETYE+RN++VVRPF+T HVIPSQGYV+Y +RKKL+KQY HL GKQIEKLKKSG+
Sbjct: 179 VALDVGETYEIRNNLVVRPFRTQHVIPSQGYVVYSIRKKLRKQYAHLNGKQIEKLKKSGI 238
Query: 239 EITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
EITD+ILSPEVAFTGDTTS+FML+P NADALRAKILITEATFLDD SI+HA+QHGHTHL
Sbjct: 239 EITDMILSPEVAFTGDTTSDFMLDPCNADALRAKILITEATFLDDSFSIDHARQHGHTHL 298
Query: 299 S-------------------------EDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 329
EDIRQA KLQS++SAKVVPLTEGFKS+Y+
Sbjct: 299 FEIIANAQWIRNKAVLLTHFSPRYTIEDIRQAASKLQSRLSAKVVPLTEGFKSMYS 354
>gi|297831528|ref|XP_002883646.1| hypothetical protein ARALYDRAFT_480092 [Arabidopsis lyrata subsp.
lyrata]
gi|297329486|gb|EFH59905.1| hypothetical protein ARALYDRAFT_480092 [Arabidopsis lyrata subsp.
lyrata]
Length = 353
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 249/358 (69%), Positives = 287/358 (80%), Gaps = 34/358 (9%)
Query: 1 MQLS-LPTSPSKLPTIFPFHPSSIPKTPQSPHHLS--LQSHVGP-LNALKSAGFLSSISR 56
MQLS P SPSK IFPF P P H L+ +QSH ++ +K +G+ SSISR
Sbjct: 1 MQLSSFPISPSK---IFPFTKYHAP--PVIIHQLAAQIQSHRSNFVSPVKVSGYFSSISR 55
Query: 57 AIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQ 116
AI+EEEEYRKARAAV RKG++LE Y IEG+S+GGHETCVI+PELKC FDIGRCP+RAIQQ
Sbjct: 56 AIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQQ 115
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
F+FITH HLDHIGGLPMYVASRGLYNL+PP IFVPPSIKEDVEKL EIHR++G VELN+
Sbjct: 116 KFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELNV 175
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
+L+ LDVGETYE+RNDIVVRPF THHVIPSQGYVIY +RKKL+KQY HLKGKQIEK+KKS
Sbjct: 176 ELIPLDVGETYELRNDIVVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKKS 235
Query: 237 GVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHT 296
GVEITD ILSPE+AFTGDTT+E+ML+PRNADALR+K+LITEATFLD+ S EHAQ GHT
Sbjct: 236 GVEITDTILSPEIAFTGDTTAEYMLDPRNADALRSKVLITEATFLDESFSTEHAQALGHT 295
Query: 297 HLS-------------------------EDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 329
H+S E+IR+AVLKLQSKVSAKV+PLTEGF+S Y+
Sbjct: 296 HISQIIENAKWIRSKTVLLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEGFRSRYS 353
>gi|225447197|ref|XP_002277241.1| PREDICTED: ribonuclease Z, chloroplastic [Vitis vinifera]
gi|297739240|emb|CBI28891.3| unnamed protein product [Vitis vinifera]
Length = 354
Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust.
Identities = 253/360 (70%), Positives = 286/360 (79%), Gaps = 37/360 (10%)
Query: 1 MQLSLPTSPSKLPTI------FPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSI 54
MQ+SLP S SK+P + P P +IPK P +++ S + K +G+LS I
Sbjct: 1 MQISLPFSTSKVPYLSPLPNPTPQPPLTIPK-PHPKSYITAHS-----SRPKGSGYLSLI 54
Query: 55 SRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAI 114
RAI+EEEEYRKARA V R G+DLEGY+IEG+SIGGHETCVIIPELK AFDIGRCP+RAI
Sbjct: 55 GRAIEEEEEYRKARAEVARNGVDLEGYSIEGISIGGHETCVIIPELKSAFDIGRCPSRAI 114
Query: 115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
QQNF+FITH HLDHIGGLPMYVA+RGLYNLKPPTIFVPP IKEDVEKLF+IHR+L VEL
Sbjct: 115 QQNFLFITHAHLDHIGGLPMYVATRGLYNLKPPTIFVPPCIKEDVEKLFDIHRALSQVEL 174
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLK 234
LDLVALDVGETYEMRN++VVRPFKTHHVIPSQGYVIY +RKKLKKQYIHLKGKQIEKLK
Sbjct: 175 KLDLVALDVGETYEMRNNLVVRPFKTHHVIPSQGYVIYTVRKKLKKQYIHLKGKQIEKLK 234
Query: 235 KSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHG 294
SG+EITD ILSPEVAFTGDT S+FML PRNADALRAK+LITEATFLD+ +SI+HA++HG
Sbjct: 235 NSGIEITDTILSPEVAFTGDTRSDFMLEPRNADALRAKVLITEATFLDNGISIDHAREHG 294
Query: 295 HTHLS-------------------------EDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 329
HTHL EDIR+AV KLQSKVSA+VVPL EGFKS+Y
Sbjct: 295 HTHLFEIIENAEWIRNKAVLLTHFSSRYHIEDIRKAVSKLQSKVSARVVPLMEGFKSMYA 354
>gi|363806948|ref|NP_001242565.1| uncharacterized protein LOC100807082 [Glycine max]
gi|255636804|gb|ACU18735.1| unknown [Glycine max]
Length = 353
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 242/355 (68%), Positives = 281/355 (79%), Gaps = 28/355 (7%)
Query: 1 MQLSLPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGPLNALK-SAGFLSSISRAID 59
MQ+SL K P +FP H P P H +S QSHV N LK S+G+LS IS+ ID
Sbjct: 1 MQISLSDLAFKTPQLFPIHHPIFPPKPPLNHQVSTQSHVS--NVLKGSSGYLSEISKVID 58
Query: 60 EEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFV 119
EE+YR AR+ V RK +DLEGY+IEG+S+GG ETC+IIPE KC+FDIGRCP+RAIQQNF+
Sbjct: 59 HEEQYRVARSQVSRKVLDLEGYSIEGLSVGGQETCIIIPEFKCSFDIGRCPSRAIQQNFL 118
Query: 120 FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
FITH HLDHIGGLPMYVASRGL+NLKPPT+FVPP IKEDVEKL +IHR++G VELN ++V
Sbjct: 119 FITHAHLDHIGGLPMYVASRGLFNLKPPTVFVPPCIKEDVEKLLDIHRTMGQVELNAEVV 178
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVE 239
ALDVGETYE+RN++VVRPFKT HVIPSQGYV+Y +RKKL+KQY HL GKQIEKLKKSGVE
Sbjct: 179 ALDVGETYEIRNNLVVRPFKTQHVIPSQGYVVYSIRKKLRKQYAHLNGKQIEKLKKSGVE 238
Query: 240 ITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLS 299
ITD++LSPEVAFTGDTTS+FML+P NADALRAKI ITEATFLDD SI+HA+QHGHTHL
Sbjct: 239 ITDMMLSPEVAFTGDTTSDFMLDPCNADALRAKIFITEATFLDDSFSIDHARQHGHTHLF 298
Query: 300 -------------------------EDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 329
EDIRQA KLQS++SAKVVPLTEGFKS+Y+
Sbjct: 299 EIIANAQWIRNEAVLLTHFSPRYTIEDIRQAASKLQSRLSAKVVPLTEGFKSMYS 353
>gi|357493079|ref|XP_003616828.1| Nuclear ribonuclease Z [Medicago truncatula]
gi|355518163|gb|AES99786.1| Nuclear ribonuclease Z [Medicago truncatula]
Length = 357
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 243/354 (68%), Positives = 279/354 (78%), Gaps = 34/354 (9%)
Query: 1 MQLSLPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSISRAIDE 60
MQ+ L K P IFPFH +IP Q LS P N+LK +G+LS IS+AID
Sbjct: 13 MQIPLTNPTFKPPQIFPFH-HTIPSPKQ---QLSF-----PTNSLKGSGYLSEISKAIDY 63
Query: 61 EEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVF 120
EE+YR A++ V RKG+DLEGY+IEGVSIGGHETC+IIPE KCAFDIGRCPTRAI QNFVF
Sbjct: 64 EEQYRVAKSQVQRKGLDLEGYSIEGVSIGGHETCIIIPEFKCAFDIGRCPTRAIHQNFVF 123
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVA 180
ITH HLDHIGGLPMY+ SRGLYNLKPPT+FVPP IK+DV+KL ++H++LG VELN +LVA
Sbjct: 124 ITHAHLDHIGGLPMYIGSRGLYNLKPPTVFVPPCIKDDVQKLLDVHKTLGQVELNCELVA 183
Query: 181 LDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEI 240
LDVGETYE+RND+VVRPF+T HVIPSQGY++Y +RKKL+KQY HL GKQIEKLKKSGVEI
Sbjct: 184 LDVGETYEIRNDLVVRPFRTQHVIPSQGYIVYSIRKKLRKQYSHLNGKQIEKLKKSGVEI 243
Query: 241 TDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLS- 299
TD ILSPEVAFTGDTTS+FML+P NADALRAK+LITEATFLDD ++EHA+QHGHTH+S
Sbjct: 244 TDTILSPEVAFTGDTTSDFMLDPLNADALRAKVLITEATFLDDSTTVEHARQHGHTHISE 303
Query: 300 ------------------------EDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 329
EDIRQA +LQSK SAKVVPLTEGFKS YT
Sbjct: 304 LIENAQWIRNKTVLLTHFSSRYNIEDIRQAASELQSKTSAKVVPLTEGFKSQYT 357
>gi|22325471|ref|NP_178532.2| Ribonuclease Z [Arabidopsis thaliana]
gi|41017757|sp|Q8L633.1|RNZC_ARATH RecName: Full=Ribonuclease Z, chloroplastic; Short=RNase Z;
AltName: Full=Zinc phosphodiesterase CPZ; AltName:
Full=tRNA 3 endonuclease; AltName: Full=tRNase Z; Flags:
Precursor
gi|20466197|gb|AAM20416.1| unknown protein [Arabidopsis thaliana]
gi|24899839|gb|AAN65134.1| unknown protein [Arabidopsis thaliana]
gi|330250749|gb|AEC05843.1| Ribonuclease Z [Arabidopsis thaliana]
Length = 354
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 246/359 (68%), Positives = 282/359 (78%), Gaps = 35/359 (9%)
Query: 1 MQLS--LPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGP---LNALKSAGFLSSIS 55
MQLS P SP P IFP + K P H L+ Q ++ +K +G+ SSIS
Sbjct: 1 MQLSSSFPISP---PKIFP--STKHHKPPVITHQLAAQIQSNRRHFVSPVKVSGYFSSIS 55
Query: 56 RAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ 115
RAI+EEEEYRKARAAV RKG++LE Y IEG+S+GGHETCVI+PELKC FDIGRCP+RAIQ
Sbjct: 56 RAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQ 115
Query: 116 QNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
Q F+FITH HLDHIGGLPMYVASRGLYNL+PP IFVPPSIKEDVEKL EIHR++G VELN
Sbjct: 116 QKFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELN 175
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKK 235
++L+ L VGETYE+RNDIVVRPF THHVIPSQGYVIY +RKKL+KQY HLKGKQIEK+KK
Sbjct: 176 VELIPLAVGETYELRNDIVVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKK 235
Query: 236 SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
SGVEITD ILSPE+AFTGDTTSE+ML+PRNADALRAK+LITEATFLD+ S EHAQ GH
Sbjct: 236 SGVEITDTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFLDESFSTEHAQALGH 295
Query: 296 THLS-------------------------EDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 329
TH+S E+IR+AVLKLQSKVSAKV+PLTEGF+S Y+
Sbjct: 296 THISQIIENAKWIRSKTVLLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEGFRSRYS 354
>gi|20975607|emb|CAD22099.1| RNase Z [Arabidopsis thaliana]
Length = 354
Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust.
Identities = 240/359 (66%), Positives = 280/359 (77%), Gaps = 35/359 (9%)
Query: 1 MQLS--LPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGP---LNALKSAGFLSSIS 55
MQLS P SP P IFP + K P H L+ Q ++ +K +G+ SSIS
Sbjct: 1 MQLSSSFPISP---PKIFP--STKHHKPPVITHQLAAQIQSNRRHFVSPVKVSGYFSSIS 55
Query: 56 RAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ 115
RAI+EEEEYRKARAAV RKG++LE Y IEG+S+GGHETCVI+PELKC FDI RCP+RAIQ
Sbjct: 56 RAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIVRCPSRAIQ 115
Query: 116 QNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
Q F+FITH HLDHIGGLPMYVASRGLYNL+PP IFVPPSIKEDVEKL EIHR++G VELN
Sbjct: 116 QKFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELN 175
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKK 235
++L+ L VGETYE+RNDIVVRPF THHVIPSQGYVIY +RKKL+KQY HLKG+QIE++KK
Sbjct: 176 VELIPLAVGETYELRNDIVVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGRQIERIKK 235
Query: 236 SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
SGVEIT ILSPE+AFTG+TTSE+MLNPRNA+ALRAK+LI+EATFLD+ S EHAQ GH
Sbjct: 236 SGVEITYAILSPEIAFTGNTTSEYMLNPRNANALRAKVLISEATFLDESFSTEHAQALGH 295
Query: 296 THLS-------------------------EDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 329
TH+S E+IR+AVLKLQSKVSAKV+PLTEGF+S Y+
Sbjct: 296 THISQIIENAKWIRSKTVLLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEGFRSRYS 354
>gi|4587599|gb|AAD25827.1| hypothetical protein [Arabidopsis thaliana]
Length = 356
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/319 (70%), Positives = 261/319 (81%), Gaps = 13/319 (4%)
Query: 1 MQLS--LPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGP---LNALKSAGFLSSIS 55
MQLS P SP P IFP + K P H L+ Q ++ +K +G+ SSIS
Sbjct: 1 MQLSSSFPISP---PKIFP--STKHHKPPVITHQLAAQIQSNRRHFVSPVKVSGYFSSIS 55
Query: 56 RAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ 115
RAI+EEEEYRKARAAV RKG++LE Y IEG+S+GGHETCVI+PELKC FDIGRCP+RAIQ
Sbjct: 56 RAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQ 115
Query: 116 QNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
Q F+FITH HLDHIGGLPMYVASRGLYNL+PP IFVPPSIKEDVEKL EIHR++G VELN
Sbjct: 116 QKFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELN 175
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKK 235
++L+ L VGETYE+RNDIVVRPF THHVIPSQGYVIY +RKKL+KQY HLKGKQIEK+KK
Sbjct: 176 VELIPLAVGETYELRNDIVVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKK 235
Query: 236 SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
SGVEITD ILSPE+AFTGDTTSE+ML+PRNADALRAK+LITEATFLD+ S EHAQ GH
Sbjct: 236 SGVEITDTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFLDESFSTEHAQALGH 295
Query: 296 THLSE---DIRQAVLKLQS 311
TH+S+ I Q+ +K +S
Sbjct: 296 THISQVCDTIHQSYVKKKS 314
>gi|195656759|gb|ACG47847.1| nuclear ribonuclease Z [Zea mays]
Length = 357
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/308 (63%), Positives = 241/308 (78%), Gaps = 25/308 (8%)
Query: 46 KSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFD 105
K AG LS + RA+ +EEEYR+ARA V RKG+++EGY IEG+S+GGHETC+ +P L AFD
Sbjct: 49 KGAGLLSVLDRAMADEEEYRRARAQVQRKGVEVEGYAIEGISVGGHETCITVPSLNVAFD 108
Query: 106 IGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI 165
IGR P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPPT+FVPP I++DVE L ++
Sbjct: 109 IGRGPQFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPTVFVPPCIRDDVEDLLQV 168
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
HR +EL ++LVALD+GETYE+RND+V RPF+T+H IPSQGYVIY +R+KLKKQY HL
Sbjct: 169 HRRTSQIELKVELVALDLGETYEIRNDLVARPFQTYHTIPSQGYVIYSIRRKLKKQYAHL 228
Query: 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEM 285
KG QI KLK+SG EITD IL PEVAFTGDT S+F+L+PRNADALRAK+LITEATFLDD +
Sbjct: 229 KGSQIMKLKQSGTEITDTILYPEVAFTGDTKSDFILDPRNADALRAKVLITEATFLDDHV 288
Query: 286 SIEHAQQHGHTHLS-------------------------EDIRQAVLKLQSKVSAKVVPL 320
+EHA++HGH HLS EDIRQAV +LQ K+++KVV L
Sbjct: 289 DVEHAREHGHMHLSEIMEHFQWFRNETIVLTHFSNRYSLEDIRQAVSRLQPKLNSKVVAL 348
Query: 321 TEGFKSVY 328
TEGFKS Y
Sbjct: 349 TEGFKSDY 356
>gi|297727071|ref|NP_001175899.1| Os09g0482680 [Oryza sativa Japonica Group]
gi|215697960|dbj|BAG92124.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255678994|dbj|BAH94627.1| Os09g0482680 [Oryza sativa Japonica Group]
Length = 365
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 197/304 (64%), Positives = 240/304 (78%), Gaps = 25/304 (8%)
Query: 50 FLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRC 109
LS + RA+ +EEEYR+ARA V RKG+++EGY IEGVS+GGHETCV +P L AFDIGR
Sbjct: 61 LLSVLDRAMADEEEYRRARAQVHRKGVEVEGYAIEGVSVGGHETCVTVPSLNVAFDIGRG 120
Query: 110 PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL 169
P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPP +FVPP IK+DVE L +IHR +
Sbjct: 121 PLFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPVVFVPPCIKDDVEDLLQIHRRM 180
Query: 170 GNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQ 229
V+L ++LVALD+GET+E+RND+V RPF+THH IPSQGYVIY +R+KLKKQY HLKG Q
Sbjct: 181 SQVDLKVELVALDLGETFEIRNDLVARPFETHHAIPSQGYVIYSVRRKLKKQYAHLKGNQ 240
Query: 230 IEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEH 289
I K+K+SG EITD IL PEVAFTGDT S+F+L+PRNADALRAK+LITEATFLDD++ ++H
Sbjct: 241 IMKMKQSGAEITDTILYPEVAFTGDTKSDFILDPRNADALRAKVLITEATFLDDQIDVDH 300
Query: 290 AQQHGHTHLS-------------------------EDIRQAVLKLQSKVSAKVVPLTEGF 324
A++HGH HLS EDIRQAV KLQSK+S+KVV LTEGF
Sbjct: 301 AREHGHMHLSEIMEHSQWFRNKAIVLTHFSNRYSLEDIRQAVSKLQSKLSSKVVALTEGF 360
Query: 325 KSVY 328
KS Y
Sbjct: 361 KSDY 364
>gi|125564150|gb|EAZ09530.1| hypothetical protein OsI_31806 [Oryza sativa Indica Group]
Length = 365
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/304 (64%), Positives = 240/304 (78%), Gaps = 25/304 (8%)
Query: 50 FLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRC 109
LS + RA+ +EEEYR+ARA V RKG+++EGY IEGVS+GGHETCV +P L AFDIGR
Sbjct: 61 LLSVLDRAMADEEEYRRARAQVQRKGVEVEGYAIEGVSVGGHETCVTVPSLNVAFDIGRG 120
Query: 110 PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL 169
P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPP +FVPP IK+DVE L +IHR +
Sbjct: 121 PLFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPVVFVPPCIKDDVEDLLQIHRRM 180
Query: 170 GNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQ 229
V+L ++LVALD+GET+E+RND+V RPF+THH IPSQGYVIY +R+KLKKQY HLKG Q
Sbjct: 181 SQVDLKVELVALDLGETFEIRNDLVARPFETHHAIPSQGYVIYSVRRKLKKQYAHLKGNQ 240
Query: 230 IEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEH 289
I K+K+SG EITD IL PEVAFTGDT S+F+L+P+NADALRAK+LITEATFLDD++ ++H
Sbjct: 241 IMKMKQSGAEITDTILYPEVAFTGDTKSDFILDPQNADALRAKVLITEATFLDDQIDVDH 300
Query: 290 AQQHGHTHLS-------------------------EDIRQAVLKLQSKVSAKVVPLTEGF 324
A++HGH HLS EDIRQAV KLQSK+S+KVV LTEGF
Sbjct: 301 AREHGHMHLSEIMEHSQWFRNKAIVLTHFSNRYSLEDIRQAVSKLQSKLSSKVVALTEGF 360
Query: 325 KSVY 328
KS Y
Sbjct: 361 KSDY 364
>gi|357159012|ref|XP_003578311.1| PREDICTED: ribonuclease Z, chloroplastic-like [Brachypodium
distachyon]
Length = 359
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/305 (63%), Positives = 242/305 (79%), Gaps = 25/305 (8%)
Query: 50 FLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRC 109
LS + RA+ +EEEYR+ARA V RKG+++EGY IEG+S+GGHETC+ +P L AFDIGR
Sbjct: 55 LLSVLDRALTDEEEYRRARAQVQRKGVEVEGYAIEGISVGGHETCITVPSLNVAFDIGRG 114
Query: 110 PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL 169
P A++Q+++FITH HLDHIGGLPMY+A+RGLYNLKPPT+FVPP IK+DVE+L +IHR +
Sbjct: 115 PLFAVRQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPTVFVPPCIKDDVEELLQIHRRM 174
Query: 170 GNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQ 229
+EL ++LVALD+GETYE+RND+V RPF+THH +PSQGYVIY +R+KLKKQY HLKG Q
Sbjct: 175 SRIELEVELVALDLGETYELRNDLVARPFQTHHTVPSQGYVIYSVRRKLKKQYAHLKGTQ 234
Query: 230 IEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEH 289
I KLK+SG EITD IL PEVAFTGDT S+F+L+PRNADALRAK+LITEATFLDD++ ++H
Sbjct: 235 IVKLKQSGSEITDTILYPEVAFTGDTKSDFILDPRNADALRAKVLITEATFLDDQVDVDH 294
Query: 290 AQQHGHTHLS-------------------------EDIRQAVLKLQSKVSAKVVPLTEGF 324
A++HGH HLS EDIRQAV ++Q K+ +KVV LTEGF
Sbjct: 295 AREHGHMHLSEIMEHSQWFRNETVILTHFSNRYSLEDIRQAVSRIQPKLLSKVVALTEGF 354
Query: 325 KSVYT 329
KS Y+
Sbjct: 355 KSEYS 359
>gi|242049624|ref|XP_002462556.1| hypothetical protein SORBIDRAFT_02g028070 [Sorghum bicolor]
gi|241925933|gb|EER99077.1| hypothetical protein SORBIDRAFT_02g028070 [Sorghum bicolor]
Length = 359
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/300 (63%), Positives = 236/300 (78%), Gaps = 25/300 (8%)
Query: 54 ISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRA 113
+ RA+ +EEEYR+ARA V RKG+++EGY +EG+S+GGHETCV +P L AFDIGR P A
Sbjct: 59 LDRALADEEEYRRARAQVQRKGVEVEGYAVEGISVGGHETCVTVPSLNVAFDIGRGPQFA 118
Query: 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPPT+FVPP IK+DVE L ++HR + +E
Sbjct: 119 VSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPTVFVPPCIKDDVEDLLQVHRRMSQIE 178
Query: 174 LNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKL 233
L ++LVALD+GETYE+RND+V RPF+T+H IPSQGYVIY +R+KLKKQY HLKG QI KL
Sbjct: 179 LKVELVALDLGETYEIRNDLVARPFQTYHAIPSQGYVIYSIRRKLKKQYAHLKGSQIMKL 238
Query: 234 KKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQH 293
K+SG EITD IL PEVAFTGDT S+F+L+PRNADALRAK+LITEATFLDD + +EHA++H
Sbjct: 239 KQSGTEITDTILYPEVAFTGDTKSDFILDPRNADALRAKVLITEATFLDDHVDVEHAREH 298
Query: 294 GHTHLS-------------------------EDIRQAVLKLQSKVSAKVVPLTEGFKSVY 328
GH HLS EDI QAV +LQ K+++K+V LTEGFKS Y
Sbjct: 299 GHMHLSEIMEHSQWFRNETIVLTHFSNRYSLEDIHQAVSRLQPKLNSKIVALTEGFKSEY 358
>gi|414885983|tpg|DAA61997.1| TPA: hypothetical protein ZEAMMB73_377552 [Zea mays]
Length = 388
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/339 (57%), Positives = 241/339 (71%), Gaps = 56/339 (16%)
Query: 46 KSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFD 105
K AG LS + RA+ +EEEYR+ARA V RKG+++EGY IEG+S+GGHETC+ +P L AFD
Sbjct: 49 KGAGLLSVLDRAMADEEEYRRARAQVQRKGVEVEGYAIEGISVGGHETCITVPSLNVAFD 108
Query: 106 IGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI 165
IGR P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPPT+FVPP I++DVE L ++
Sbjct: 109 IGRGPQFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPTVFVPPCIRDDVEDLLQV 168
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQ------------------ 207
HR +EL ++LVALD+GETYE+RND+V RPF+T+H IPSQ
Sbjct: 169 HRRTSQIELKVELVALDLGETYEIRNDLVARPFQTYHTIPSQVLLLRASRHLFFVICHDL 228
Query: 208 -------------GYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD 254
GYVIY +R+KLKKQY HLKG QI KLK+SG EITD IL PEVAFTGD
Sbjct: 229 MPIDIIHPMNGVKGYVIYSIRRKLKKQYAHLKGSQIMKLKQSGTEITDTILYPEVAFTGD 288
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLS--------------- 299
T S+F+L+PRNADALRAK+LITEATFLDD + +EHA++HGH HLS
Sbjct: 289 TKSDFILDPRNADALRAKVLITEATFLDDHVDVEHAREHGHMHLSEIMEHFQWFRNETIV 348
Query: 300 ----------EDIRQAVLKLQSKVSAKVVPLTEGFKSVY 328
EDIRQAV +LQ K+++KVV LTEGFKS Y
Sbjct: 349 LTHFSNRYSLEDIRQAVSRLQPKLNSKVVALTEGFKSDY 387
>gi|414885985|tpg|DAA61999.1| TPA: nuclear ribonuclease Z [Zea mays]
Length = 442
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/309 (61%), Positives = 236/309 (76%), Gaps = 26/309 (8%)
Query: 46 KSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFD 105
K AG LS + RA+ +EEEYR+ARA V RKG+++EGY IEG+S+GGHETC+ +P L AFD
Sbjct: 49 KGAGLLSVLDRAMADEEEYRRARAQVQRKGVEVEGYAIEGISVGGHETCITVPSLNVAFD 108
Query: 106 IGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI 165
IGR P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPPT+FVPP I++DVE L ++
Sbjct: 109 IGRGPQFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPTVFVPPCIRDDVEDLLQV 168
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
HR +EL ++LVALD+GETYE+RND+V RPF+T+H IPSQGYVIY +R+KLKKQY HL
Sbjct: 169 HRRTSQIELKVELVALDLGETYEIRNDLVARPFQTYHTIPSQGYVIYSIRRKLKKQYAHL 228
Query: 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEM 285
KG QI KLK+SG EITD IL PEVAFTGDT S+F+L+PRNADALRAK+LITEATFLDD +
Sbjct: 229 KGSQIMKLKQSGTEITDTILYPEVAFTGDTKSDFILDPRNADALRAKVLITEATFLDDHV 288
Query: 286 SIEHAQQHGHTHLS-------------------------EDIRQAVLKLQSKVSAKVVPL 320
+EHA++HGH HLS EDIRQAV +LQ K+++K P+
Sbjct: 289 DVEHAREHGHMHLSEIMEHFQWFRNETIVLTHFSNRYSLEDIRQAVSRLQPKLNSKGHPI 348
Query: 321 T-EGFKSVY 328
E V+
Sbjct: 349 NGEALPDVW 357
>gi|219362919|ref|NP_001136933.1| nuclear ribonuclease Z [Zea mays]
gi|194697676|gb|ACF82922.1| unknown [Zea mays]
gi|414885986|tpg|DAA62000.1| TPA: nuclear ribonuclease Z [Zea mays]
Length = 492
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/296 (62%), Positives = 231/296 (78%), Gaps = 25/296 (8%)
Query: 46 KSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFD 105
K AG LS + RA+ +EEEYR+ARA V RKG+++EGY IEG+S+GGHETC+ +P L AFD
Sbjct: 49 KGAGLLSVLDRAMADEEEYRRARAQVQRKGVEVEGYAIEGISVGGHETCITVPSLNVAFD 108
Query: 106 IGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI 165
IGR P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPPT+FVPP I++DVE L ++
Sbjct: 109 IGRGPQFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPTVFVPPCIRDDVEDLLQV 168
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
HR +EL ++LVALD+GETYE+RND+V RPF+T+H IPSQGYVIY +R+KLKKQY HL
Sbjct: 169 HRRTSQIELKVELVALDLGETYEIRNDLVARPFQTYHTIPSQGYVIYSIRRKLKKQYAHL 228
Query: 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEM 285
KG QI KLK+SG EITD IL PEVAFTGDT S+F+L+PRNADALRAK+LITEATFLDD +
Sbjct: 229 KGSQIMKLKQSGTEITDTILYPEVAFTGDTKSDFILDPRNADALRAKVLITEATFLDDHV 288
Query: 286 SIEHAQQHGHTHLS-------------------------EDIRQAVLKLQSKVSAK 316
+EHA++HGH HLS EDIRQAV +LQ K+++K
Sbjct: 289 DVEHAREHGHMHLSEIMEHFQWFRNETIVLTHFSNRYSLEDIRQAVSRLQPKLNSK 344
>gi|222641796|gb|EEE69928.1| hypothetical protein OsJ_29793 [Oryza sativa Japonica Group]
Length = 357
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/304 (59%), Positives = 221/304 (72%), Gaps = 33/304 (10%)
Query: 50 FLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRC 109
LS + RA+ +EEEYR+ARA V RKG+++EGY IEGVS+GGHETCV +P L AFDIGR
Sbjct: 61 LLSVLDRAMADEEEYRRARAQVHRKGVEVEGYAIEGVSVGGHETCVTVPSLNVAFDIGRG 120
Query: 110 PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL 169
P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPP +FVPP IK+DVE L +IHR +
Sbjct: 121 PLFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPVVFVPPCIKDDVEDLLQIHRRM 180
Query: 170 GNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQ 229
V+L G + ++ + HH IPSQGYVIY +R+KLKKQY HLKG Q
Sbjct: 181 SQVDLK--------GRHLKYVMTLLPDHLRLHHAIPSQGYVIYSVRRKLKKQYAHLKGNQ 232
Query: 230 IEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEH 289
I K+K+SG EITD IL PEVAFTGDT S+F+L+PRNADALRAK+LITEATFLDD++ ++H
Sbjct: 233 IMKMKQSGAEITDTILYPEVAFTGDTKSDFILDPRNADALRAKVLITEATFLDDQIDVDH 292
Query: 290 AQQHGHTHLS-------------------------EDIRQAVLKLQSKVSAKVVPLTEGF 324
A++HGH HLS EDIRQAV KLQSK+S+KVV LTEGF
Sbjct: 293 AREHGHMHLSEIMEHSQWFRNKAIVLTHFSNRYSLEDIRQAVSKLQSKLSSKVVALTEGF 352
Query: 325 KSVY 328
KS Y
Sbjct: 353 KSDY 356
>gi|116785148|gb|ABK23610.1| unknown [Picea sitchensis]
Length = 291
Score = 343 bits (879), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 160/276 (57%), Positives = 208/276 (75%), Gaps = 25/276 (9%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
+G + GY+IEG+SIGG ETCVI+P L AFDIGRCP RAI Q+F+FI+HGH+DHIGGLP
Sbjct: 16 RGRQIAGYSIEGLSIGGQETCVIVPTLNMAFDIGRCPPRAIAQDFLFISHGHMDHIGGLP 75
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
MYVA+RGLYN++PPTIFVP IKE VEKLFE+HR++ + ELN +LV L+VGE Y++R D+
Sbjct: 76 MYVATRGLYNMRPPTIFVPAEIKEHVEKLFEVHRAMDHSELNHNLVGLNVGEEYQIRKDL 135
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
+VRPFKT+HVIPSQGY+IY +++KLKK+Y+ I+ LK SGVEITD ++SPE+AFTG
Sbjct: 136 LVRPFKTYHVIPSQGYIIYSVKQKLKKEYLGRSSDDIKNLKFSGVEITDTVISPEIAFTG 195
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLS-------------- 299
DT +EF+++P N DA+RAK+LI E TF+DD M+IEHA+++GHTHLS
Sbjct: 196 DTMAEFIVDPNNVDAMRAKLLIMETTFVDDAMTIEHAREYGHTHLSEVAAFADRFQNKAI 255
Query: 300 -----------EDIRQAVLKLQSKVSAKVVPLTEGF 324
E+I+ AV KL + +V LTEGF
Sbjct: 256 LLIHFSARYRIEEIKAAVAKLPQTLFGRVFTLTEGF 291
>gi|226492918|ref|NP_001152148.1| LOC100285786 [Zea mays]
gi|195653199|gb|ACG46067.1| nuclear ribonuclease Z [Zea mays]
Length = 302
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 147/237 (62%), Positives = 197/237 (83%), Gaps = 1/237 (0%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
I++EGY ++GVSIGG ETCVI P L AFDIGRCP RA+ Q F+F++HGHLDHIGGLPMY
Sbjct: 29 IEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVSHGHLDHIGGLPMY 88
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGL+ L+PPTIFVP +++ VE+LFE+HR++ ELN +LV L+VGE YE+R D+ V
Sbjct: 89 VATRGLFRLRPPTIFVPACLRDLVERLFEVHRAMDQSELNHNLVPLEVGEEYELRRDLKV 148
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
R F+T+H IPSQGYVIY +++KLK+++I L G +I++LK SGVEIT+ + +PE+AFTGDT
Sbjct: 149 RAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKRLKLSGVEITNTVSTPEIAFTGDT 208
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSK 312
T++F+L+P NAD L+AKIL+ E+TFLDD +S+EHA+++GHTHL E QA KLQ+K
Sbjct: 209 TADFILDPDNADVLQAKILVVESTFLDDSISVEHAREYGHTHLFEITSQAD-KLQNK 264
>gi|194699324|gb|ACF83746.1| unknown [Zea mays]
gi|413925893|gb|AFW65825.1| nuclear ribonuclease Z [Zea mays]
Length = 302
Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 146/237 (61%), Positives = 197/237 (83%), Gaps = 1/237 (0%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
I++EGY ++GVSIGG ETCVI P L AFDIGRCP RA+ Q F+F++HGHLDHIGGLPMY
Sbjct: 29 IEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVSHGHLDHIGGLPMY 88
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGL+ L+PPTIFVP +++ VE+LFE+HR++ ELN +LV L+VGE YE+R D+ V
Sbjct: 89 VATRGLFRLRPPTIFVPACLRDLVERLFEVHRAMDQSELNHNLVPLEVGEEYELRRDLKV 148
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
R F+T+H IPSQGYVIY +++KLK+++I L G +I++LK SGVEIT+ + +PE+AF+GDT
Sbjct: 149 RAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKRLKLSGVEITNTVSTPEIAFSGDT 208
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSK 312
T++F+L+P NAD L+AKIL+ E+TFLDD +S+EHA+++GHTHL E QA KLQ+K
Sbjct: 209 TADFILDPDNADVLQAKILVVESTFLDDSISVEHAREYGHTHLFEITSQAD-KLQNK 264
>gi|297839343|ref|XP_002887553.1| hypothetical protein ARALYDRAFT_476606 [Arabidopsis lyrata subsp.
lyrata]
gi|297333394|gb|EFH63812.1| hypothetical protein ARALYDRAFT_476606 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 148/240 (61%), Positives = 192/240 (80%), Gaps = 1/240 (0%)
Query: 73 RKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGL 132
+K + +EGY IEG+SIGGHETC+I P L+ AFDIGRCP RAI Q+F+FI+H H+DHIGGL
Sbjct: 4 KKAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGL 63
Query: 133 PMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND 192
PMYVA+RGLY +KPPTI VP SIKE VE LFE+HR L + EL +LV LD+GE + +R D
Sbjct: 64 PMYVATRGLYKMKPPTIIVPKSIKETVESLFEVHRKLDSSELKHNLVGLDIGEEFIIRKD 123
Query: 193 IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFT 252
+ V+ FKT+HVI SQGYV+Y + KLK++YI L G +I+ LK SGVEITD I +PEVAFT
Sbjct: 124 LKVKAFKTYHVIQSQGYVVYSTKHKLKQEYIGLSGNEIKNLKASGVEITDSITTPEVAFT 183
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSK 312
GDTT++F+++ NADAL+AK+L+ E+TFLDD +S+EHA+ +GH HLSE + A K ++K
Sbjct: 184 GDTTADFVVDESNADALKAKVLVMESTFLDDSVSVEHARDYGHIHLSEIVNHAA-KFENK 242
>gi|30699037|ref|NP_177608.2| nuclear ribonuclease Z [Arabidopsis thaliana]
gi|88984765|sp|Q8LGU7.3|RNZN_ARATH RecName: Full=Nuclear ribonuclease Z; Short=RNase Z; AltName:
Full=Zinc phosphodiesterase NUZ; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|20975609|emb|CAD22100.1| RNase Z [Arabidopsis thaliana]
gi|90962972|gb|ABE02410.1| At1g74700 [Arabidopsis thaliana]
gi|332197502|gb|AEE35623.1| nuclear ribonuclease Z [Arabidopsis thaliana]
Length = 280
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 147/233 (63%), Positives = 188/233 (80%)
Query: 73 RKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGL 132
+K + +EGY IEG+SIGGHETC+I P L+ AFDIGRCP RAI Q+F+FI+H H+DHIGGL
Sbjct: 4 KKAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGL 63
Query: 133 PMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND 192
PMYVA+RGLY +KPPTI VP SIKE VE LFE+HR L + EL +LV LD+GE + +R D
Sbjct: 64 PMYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGEEFIIRKD 123
Query: 193 IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFT 252
+ V+ FKT HVI SQGYV+Y + KLKK+YI L G +I+ LK SGVEITD I++PEVAFT
Sbjct: 124 LKVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVEITDSIITPEVAFT 183
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
GDTTS+F+++ NADAL+AK+L+ E+TFLDD +S+EHA+ +GH H+SE + A
Sbjct: 184 GDTTSDFVVDETNADALKAKVLVMESTFLDDSVSVEHARDYGHIHISEIVNHA 236
>gi|242064700|ref|XP_002453639.1| hypothetical protein SORBIDRAFT_04g009740 [Sorghum bicolor]
gi|241933470|gb|EES06615.1| hypothetical protein SORBIDRAFT_04g009740 [Sorghum bicolor]
Length = 315
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 143/241 (59%), Positives = 197/241 (81%), Gaps = 5/241 (2%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
+++EGY ++GVSIGG ETCVI P L AFDIGRCP RA+ Q F+F++HGHLDHIGGLPMY
Sbjct: 35 MEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVSHGHLDHIGGLPMY 94
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGL+ L+PPTIFVP ++E VE+LFE+HR++ ELN +LV L+VGE YE R D+ V
Sbjct: 95 VATRGLFRLRPPTIFVPACLRELVERLFEVHRAIDQSELNHNLVPLEVGEEYEFRRDLKV 154
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
R F+T+H IPSQGYVIY +++KLK+++I L G +I+ LK SGVEIT+ + +PE+AFTGDT
Sbjct: 155 RAFRTYHTIPSQGYVIYSVKQKLKQEFIGLPGSEIKHLKLSGVEITNTVSTPEIAFTGDT 214
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSA 315
T++F+L+P NAD L+AKIL+ E+TFLDD +S+EHA+++GHTHL E L L++++++
Sbjct: 215 TADFILDPDNADVLQAKILVVESTFLDDSISVEHAREYGHTHLYE-----YLPLETQIAS 269
Query: 316 K 316
+
Sbjct: 270 Q 270
>gi|5882718|gb|AAD55271.1|AC008263_2 ESTs gb|AA067482 and gb|AI100542 come from this gene [Arabidopsis
thaliana]
Length = 290
Score = 320 bits (820), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 151/239 (63%), Positives = 192/239 (80%), Gaps = 2/239 (0%)
Query: 73 RKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGL 132
+K + +EGY IEG+SIGGHETC+I P L+ AFDIGRCP RAI Q+F+FI+H H+DHIGGL
Sbjct: 4 KKAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGL 63
Query: 133 PMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDV-GETYEMRN 191
PMYVA+RGLY +KPPTI VP SIKE VE LFE+HR L + EL +LV LD+ GE + +R
Sbjct: 64 PMYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGGEEFIIRK 123
Query: 192 DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAF 251
D+ V+ FKT HVI SQGYV+Y + KLKK+YI L G +I+ LK SGVEITD I++PEVAF
Sbjct: 124 DLKVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVEITDSIITPEVAF 183
Query: 252 TGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQ 310
TGDTTS+F+++ NADAL+AK+L+ E+TFLDD +S+EHA+ +GH H+SE I +LKLQ
Sbjct: 184 TGDTTSDFVVDETNADALKAKVLVMESTFLDDSVSVEHARDYGHIHISEKI-SYILKLQ 241
>gi|12324792|gb|AAG52354.1|AC011765_6 unknown protein; 121665-123450 [Arabidopsis thaliana]
Length = 281
Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 147/234 (62%), Positives = 188/234 (80%), Gaps = 1/234 (0%)
Query: 73 RKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGL 132
+K + +EGY IEG+SIGGHETC+I P L+ AFDIGRCP RAI Q+F+FI+H H+DHIGGL
Sbjct: 4 KKAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGL 63
Query: 133 PMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDV-GETYEMRN 191
PMYVA+RGLY +KPPTI VP SIKE VE LFE+HR L + EL +LV LD+ GE + +R
Sbjct: 64 PMYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGGEEFIIRK 123
Query: 192 DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAF 251
D+ V+ FKT HVI SQGYV+Y + KLKK+YI L G +I+ LK SGVEITD I++PEVAF
Sbjct: 124 DLKVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVEITDSIITPEVAF 183
Query: 252 TGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
TGDTTS+F+++ NADAL+AK+L+ E+TFLDD +S+EHA+ +GH H+SE + A
Sbjct: 184 TGDTTSDFVVDETNADALKAKVLVMESTFLDDSVSVEHARDYGHIHISEIVNHA 237
>gi|297734015|emb|CBI15262.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 317 bits (811), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 147/276 (53%), Positives = 203/276 (73%), Gaps = 25/276 (9%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
KGI +EGY +EG+SIGG ETC+I+P LK AFDIGRCP RAI Q+F+FI+HGH+DHIGGLP
Sbjct: 55 KGIQIEGYPVEGLSIGGQETCIILPSLKLAFDIGRCPQRAISQDFLFISHGHMDHIGGLP 114
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
MYVA+RGLY +KPP I VP +IKE+VE LF++HR++ EL +L+ L+VGE + +R D+
Sbjct: 115 MYVATRGLYRMKPPIIIVPKAIKENVEMLFQVHRAMDESELKHNLIGLNVGEEFYLRKDL 174
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
VR F+T+HVIPSQGYV+Y +++KLK++Y+ L G +I+ LK SGVEIT + +PE+AFTG
Sbjct: 175 KVRAFRTYHVIPSQGYVVYSVKQKLKQEYVGLPGNEIKNLKLSGVEITYTMTTPEIAFTG 234
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE------------- 300
DT S+F+L+ N DAL A++LI E+TF+D+ +++EHA+++GHTHLSE
Sbjct: 235 DTMSDFILDHTNVDALMARVLIMESTFVDNTVTVEHAREYGHTHLSEIVSYADRFQNKAI 294
Query: 301 ------------DIRQAVLKLQSKVSAKVVPLTEGF 324
+I++AV L + +V LTEGF
Sbjct: 295 LLIHFSARYTTDEIQEAVSALPPPLGGRVFALTEGF 330
>gi|225456689|ref|XP_002273058.1| PREDICTED: nuclear ribonuclease Z isoform 1 [Vitis vinifera]
Length = 290
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 147/276 (53%), Positives = 203/276 (73%), Gaps = 25/276 (9%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
KGI +EGY +EG+SIGG ETC+I+P LK AFDIGRCP RAI Q+F+FI+HGH+DHIGGLP
Sbjct: 15 KGIQIEGYPVEGLSIGGQETCIILPSLKLAFDIGRCPQRAISQDFLFISHGHMDHIGGLP 74
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
MYVA+RGLY +KPP I VP +IKE+VE LF++HR++ EL +L+ L+VGE + +R D+
Sbjct: 75 MYVATRGLYRMKPPIIIVPKAIKENVEMLFQVHRAMDESELKHNLIGLNVGEEFYLRKDL 134
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
VR F+T+HVIPSQGYV+Y +++KLK++Y+ L G +I+ LK SGVEIT + +PE+AFTG
Sbjct: 135 KVRAFRTYHVIPSQGYVVYSVKQKLKQEYVGLPGNEIKNLKLSGVEITYTMTTPEIAFTG 194
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE------------- 300
DT S+F+L+ N DAL A++LI E+TF+D+ +++EHA+++GHTHLSE
Sbjct: 195 DTMSDFILDHTNVDALMARVLIMESTFVDNTVTVEHAREYGHTHLSEIVSYADRFQNKAI 254
Query: 301 ------------DIRQAVLKLQSKVSAKVVPLTEGF 324
+I++AV L + +V LTEGF
Sbjct: 255 LLIHFSARYTTDEIQEAVSALPPPLGGRVFALTEGF 290
>gi|357140188|ref|XP_003571652.1| PREDICTED: nuclear ribonuclease Z-like [Brachypodium distachyon]
Length = 306
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 143/237 (60%), Positives = 193/237 (81%), Gaps = 1/237 (0%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
+++EGY +EG+SIGG ETCVI P L AFDIGRCP RA+ Q+F+FI+H HLDHIGGLPMY
Sbjct: 33 LEIEGYPVEGISIGGQETCVIFPTLSLAFDIGRCPQRAVSQDFLFISHAHLDHIGGLPMY 92
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGLY L+PPTIFVP ++E VE+LF++HR++ EL LV L+VGE YE+R D+ V
Sbjct: 93 VATRGLYRLRPPTIFVPKYLRELVERLFDVHRAMDQSELKHTLVPLEVGEEYELRRDLKV 152
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
+ FKT+HVIPSQGYVIY +++KLK++++ L G +I++LK S VEIT+ + PE+AFTGDT
Sbjct: 153 KAFKTYHVIPSQGYVIYSVKQKLKQEFLGLPGSEIKRLKLSDVEITNTVTVPEIAFTGDT 212
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSK 312
S+F+L+P NAD L+AKIL+ E+TFLDD +S+EHA+++GHTHL E Q+ KLQ++
Sbjct: 213 MSDFILDPDNADVLKAKILVVESTFLDDSVSVEHAREYGHTHLFEIASQSD-KLQNR 268
>gi|356575345|ref|XP_003555802.1| PREDICTED: nuclear ribonuclease Z-like [Glycine max]
Length = 279
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 148/276 (53%), Positives = 196/276 (71%), Gaps = 25/276 (9%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
K +++EGYT+ G+SIGGHETCVI P LK AFDIGRCP RA+ QNF+ ITH H+DHIGGLP
Sbjct: 4 KDLEIEGYTVGGLSIGGHETCVIFPTLKVAFDIGRCPPRAVSQNFLLITHAHMDHIGGLP 63
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
MYVA+RGLY +KPPTI VP S+KEDVEKLFEIHR + EL +L+ LDVGE + +R D+
Sbjct: 64 MYVATRGLYRMKPPTIIVPISVKEDVEKLFEIHRKMDQSELKHNLIGLDVGEEFYLRKDL 123
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
V+ F+T+HVIPSQGY++Y ++KLK +Y+ L G +I+ LK SGVEIT + PE+AFTG
Sbjct: 124 KVKAFRTYHVIPSQGYILYSEKQKLKPEYVGLSGNEIKNLKSSGVEITYTLTEPEIAFTG 183
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLS-------------- 299
DT S+F+++ N D LRA+IL+ E TF+++ +++EHA+ +GHTHLS
Sbjct: 184 DTMSDFIVDENNTDVLRARILVLECTFVNNSITVEHARDYGHTHLSEIISYAESLQNRAI 243
Query: 300 -----------EDIRQAVLKLQSKVSAKVVPLTEGF 324
E+I+ AV L +S + LTEGF
Sbjct: 244 LLIHFSARYTVEEIQHAVSALPPSLSGRTFALTEGF 279
>gi|302764956|ref|XP_002965899.1| hypothetical protein SELMODRAFT_167717 [Selaginella moellendorffii]
gi|300166713|gb|EFJ33319.1| hypothetical protein SELMODRAFT_167717 [Selaginella moellendorffii]
Length = 299
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 144/274 (52%), Positives = 199/274 (72%), Gaps = 25/274 (9%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
++ G+ +EG+SIGGHETCVI+P +K AFDIGRCP RAI Q+F+FI+H H+DHIGG+ MY
Sbjct: 25 VNAGGFAVEGISIGGHETCVIVPSMKIAFDIGRCPQRAISQDFLFISHSHMDHIGGIAMY 84
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGLY++KPPTIFVP SIK VEKLF+++R L EL++ LV LD+GE Y++ +V
Sbjct: 85 VATRGLYSMKPPTIFVPSSIKATVEKLFDVYRELDQAELSMKLVGLDIGEEYDLGKGYIV 144
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
+PFKT+HVIPSQGY+IY ++ KLK +Y+ L G +I+ L+ SGVE+T++ SPEVAFTGDT
Sbjct: 145 KPFKTYHVIPSQGYIIYAVKNKLKPEYVGLPGDKIKSLRFSGVEVTNVTRSPEVAFTGDT 204
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------------- 300
T +F+ + NAD LRAK+LI EATF++D ++EHA+++GH+HLSE
Sbjct: 205 TVDFIGDENNADVLRAKLLIMEATFINDSGTVEHAREYGHSHLSEIVALSDKFQNKAILL 264
Query: 301 ----------DIRQAVLKLQSKVSAKVVPLTEGF 324
+I +A+ KL + ++ LTEGF
Sbjct: 265 IHFSARYSKQEIIEAIEKLPETLKSRTYALTEGF 298
>gi|302802780|ref|XP_002983144.1| hypothetical protein SELMODRAFT_117445 [Selaginella moellendorffii]
gi|300149297|gb|EFJ15953.1| hypothetical protein SELMODRAFT_117445 [Selaginella moellendorffii]
Length = 308
Score = 313 bits (801), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 142/251 (56%), Positives = 197/251 (78%), Gaps = 7/251 (2%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
++ G+ +EG+SIGGHETCVI+P +K AFDIGRCP RAI Q+F+FI+H H+DHIGG+ MY
Sbjct: 25 VNAGGFAVEGISIGGHETCVIVPSMKIAFDIGRCPQRAISQDFLFISHSHMDHIGGIAMY 84
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGLY++KPPTIFVP SIK VEKLF+++R L EL++ LV LD+GE Y++ +V
Sbjct: 85 VATRGLYSMKPPTIFVPSSIKATVEKLFDVYRELDQAELSMKLVGLDIGEEYDLGKGYIV 144
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
+PFKT+HVIPSQGY+IY ++ KLK +Y+ L G +I+ L+ SGVE+T++ SPEVAFTGDT
Sbjct: 145 KPFKTYHVIPSQGYIIYAVKNKLKPEYVGLPGDKIKSLRFSGVEVTNVTRSPEVAFTGDT 204
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSA 315
T +F+ + NAD LRAK+LI EATF++D ++EHA+++GH+HLSE KL S V
Sbjct: 205 TVDFIGDENNADVLRAKLLIMEATFINDSGTVEHAREYGHSHLSE------AKL-SNVLF 257
Query: 316 KVVPLTEGFKS 326
++V L++ F++
Sbjct: 258 QIVALSDKFQN 268
>gi|388522475|gb|AFK49299.1| unknown [Medicago truncatula]
Length = 335
Score = 313 bits (801), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 145/276 (52%), Positives = 198/276 (71%), Gaps = 25/276 (9%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
KG+++EGY +EG+SIGGHETCV+ + AFDIGRCP RA+ +F+ I+H H+DHIGGLP
Sbjct: 60 KGLNIEGYQVEGLSIGGHETCVVFSHFRVAFDIGRCPPRAVSMDFLLISHAHMDHIGGLP 119
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
MYVA+RGLY +KPPTI VP S+KEDVEKLFEIHR + EL +LV LDVGE + +R+D+
Sbjct: 120 MYVATRGLYRMKPPTIIVPISVKEDVEKLFEIHRKMDQSELKHNLVGLDVGEEFSLRHDL 179
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
V+ F+T+HVIPSQGY++Y ++ KLK +YI L +I+KLK SGVEIT+ + PE+AFTG
Sbjct: 180 KVKAFRTYHVIPSQGYILYSVKNKLKPEYIGLSSDEIKKLKFSGVEITNTLKEPEIAFTG 239
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL--------------- 298
DT S+F+++ N D LRAK+L+ E+TF+++EM++EHA+ +GHTHL
Sbjct: 240 DTMSDFIIDENNTDVLRAKVLVLESTFVNNEMTVEHARDYGHTHLFEIISYADRLQNKAI 299
Query: 299 ----------SEDIRQAVLKLQSKVSAKVVPLTEGF 324
E+I+QAV L ++ + LTEGF
Sbjct: 300 LLIHFSARYTVEEIQQAVGALPPPLAGRTFALTEGF 335
>gi|255540937|ref|XP_002511533.1| ribonuclease z, chloroplast, putative [Ricinus communis]
gi|223550648|gb|EEF52135.1| ribonuclease z, chloroplast, putative [Ricinus communis]
Length = 269
Score = 310 bits (793), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 138/228 (60%), Positives = 182/228 (79%)
Query: 78 LEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVA 137
+E Y IEG+SIGGHETC+I+P L AFDIGRCP RAI Q+F+FI+H H+DHIGGLPMYVA
Sbjct: 3 IEEYPIEGLSIGGHETCIILPSLNLAFDIGRCPQRAISQDFLFISHAHMDHIGGLPMYVA 62
Query: 138 SRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRP 197
+RGLY +KPPTI VP SIKE VE+LFE+HR L ELN L+ LDVGE + +R D+ VR
Sbjct: 63 TRGLYRMKPPTIIVPTSIKETVEQLFEVHRKLDGSELNHKLIGLDVGEEFYVRKDLKVRA 122
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTS 257
F+T+H I SQGYV+Y ++ KLK++++ L G +I+ LK SGVEIT+ + +PE+AFTGDT S
Sbjct: 123 FRTYHAIQSQGYVVYSIKHKLKQEFLGLSGNEIKNLKASGVEITNTVTAPEIAFTGDTMS 182
Query: 258 EFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
+F+++ N DALRA+IL+ E+TF+DD + +EHA+ +GHTHLSE + A
Sbjct: 183 DFIIDETNIDALRARILVMESTFIDDTVKVEHARDYGHTHLSEIVNYA 230
>gi|449466917|ref|XP_004151172.1| PREDICTED: nuclear ribonuclease Z-like [Cucumis sativus]
gi|449515384|ref|XP_004164729.1| PREDICTED: nuclear ribonuclease Z-like [Cucumis sativus]
Length = 352
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 146/257 (56%), Positives = 191/257 (74%), Gaps = 6/257 (2%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
KGI +EGY I+G+SIGGHETC+I P L AFDIGRCP +AI Q+F+FI+HGH+DHIGGLP
Sbjct: 22 KGIQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKAISQDFLFISHGHMDHIGGLP 81
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
+YVA+RGLY + PPTI VP SIK DVE L E+HR L EL +L+ L+VGE +R D+
Sbjct: 82 LYVATRGLYKMGPPTIIVPKSIKNDVENLLEVHRRLDQSELRCNLIGLEVGEELSLRRDL 141
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
VR F+T+HVI SQGY++Y +++KLKK Y+ L G +I+KL+ SGVEIT I PEVAFTG
Sbjct: 142 KVRVFRTYHVIDSQGYLLYSVKQKLKKDYLGLSGNEIKKLRLSGVEITYTITEPEVAFTG 201
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
DTTS+F+++ N D LRAKIL+ E+TFL++ + +EHA+++GHTHL E I A K
Sbjct: 202 DTTSDFIVDENNIDVLRAKILVMESTFLENRVKVEHAREYGHTHLFEIINHA-----KKF 256
Query: 314 SAKVVPLTEGFKSVYTS 330
K + L F + YT+
Sbjct: 257 KNKAILLIH-FSARYTT 272
>gi|115445001|ref|NP_001046280.1| Os02g0214300 [Oryza sativa Japonica Group]
gi|49387940|dbj|BAD25038.1| putative nuclear ribonuclease Z [Oryza sativa Japonica Group]
gi|113535811|dbj|BAF08194.1| Os02g0214300 [Oryza sativa Japonica Group]
gi|125538607|gb|EAY85002.1| hypothetical protein OsI_06362 [Oryza sativa Indica Group]
Length = 302
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 138/238 (57%), Positives = 191/238 (80%), Gaps = 1/238 (0%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
+ +EGY +EG+SIGG ETCVI P L AFDIGRCP RA+ Q F+FI+H HLDHIGGLPMY
Sbjct: 29 LTVEGYPVEGISIGGQETCVIFPTLSAAFDIGRCPQRAVSQEFLFISHAHLDHIGGLPMY 88
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGLY +PPTIF+P +++ VE+LFE+HRS+ EL+ +LV L++G+ +E+R D+ V
Sbjct: 89 VATRGLYRQRPPTIFIPACLRDPVERLFELHRSMDQSELSHNLVPLEIGQEHELRRDLKV 148
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
+ FKT+H IPSQGYVIY +++KLK +Y+ L G +I++LK SGVEIT+ + PE+AFTGDT
Sbjct: 149 KAFKTYHAIPSQGYVIYTVKQKLKPEYLGLPGSEIKQLKLSGVEITNTLTVPEIAFTGDT 208
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
++F+L+P NAD L+AKIL+ E+TF+DD ++IEHA+++GHTHL E + Q KL++K
Sbjct: 209 MADFILDPDNADVLKAKILVVESTFVDDSVTIEHAREYGHTHLFEILNQCD-KLENKA 265
>gi|224124030|ref|XP_002330087.1| predicted protein [Populus trichocarpa]
gi|222871221|gb|EEF08352.1| predicted protein [Populus trichocarpa]
Length = 272
Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 143/272 (52%), Positives = 194/272 (71%), Gaps = 25/272 (9%)
Query: 78 LEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVA 137
+EGY +EG+SIGGHETC+I L AFDIGRCP RAI Q+F+FI+H H+DHIGGLPMYVA
Sbjct: 1 IEGYPVEGLSIGGHETCIIFSSLNMAFDIGRCPQRAISQDFLFISHAHMDHIGGLPMYVA 60
Query: 138 SRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRP 197
+RGLY +KPPT+ VP IKE VE+LFE+HR L EL L+ALDVG+ + +R D+ VR
Sbjct: 61 TRGLYRMKPPTVVVPTCIKETVEQLFEVHRRLDGSELKHHLIALDVGQEFYVRKDLKVRA 120
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTS 257
FKT+H I SQGYV+Y +++KLK++Y+ L G +I+ LK SGVEIT+ + SPE+AFTGDT S
Sbjct: 121 FKTYHAIQSQGYVVYSVKQKLKQEYLGLSGNEIKSLKSSGVEITNTVTSPEIAFTGDTMS 180
Query: 258 EFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE----------------- 300
+F+++ N D LRAK+L+ E+TF+D +++EHA+ +GHTHL E
Sbjct: 181 DFIIDETNIDVLRAKVLVMESTFVDGTVTVEHARDYGHTHLFEIVNYADKFQNKAILLIH 240
Query: 301 --------DIRQAVLKLQSKVSAKVVPLTEGF 324
+I++AV +L ++ +V LTEGF
Sbjct: 241 FSARYTVKEIQEAVQRLPQPLAGRVFALTEGF 272
>gi|168067069|ref|XP_001785449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662955|gb|EDQ49751.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 295
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 134/231 (58%), Positives = 185/231 (80%)
Query: 75 GIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPM 134
++++G +IEGVS+GG ETC++IP LK AFDIGRCP RAI Q+F+FI+H H+DHIGG+ M
Sbjct: 21 ALEVDGLSIEGVSVGGQETCILIPALKLAFDIGRCPERAISQDFLFISHAHMDHIGGVCM 80
Query: 135 YVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIV 194
YVA+RGL+ +KPPT+ VP +K VEKLF++HR L EL L+ LD+GE + M ++V
Sbjct: 81 YVATRGLFKMKPPTVIVPKCLKPTVEKLFDVHRELDGSELKHQLIGLDIGEEFNMGKNLV 140
Query: 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD 254
V+ FKT+HV+PSQGYV+Y ++ KLK +Y+ L G++I++LK SGV+ITD + PEVAFTGD
Sbjct: 141 VKAFKTYHVVPSQGYVVYSVKNKLKPEYLGLPGQKIKELKMSGVQITDTLRVPEVAFTGD 200
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
TT +F+L+ N DAL+AK+LI E TFLDD ++I+HA+++GHTHLSE I+ A
Sbjct: 201 TTPDFILDDANIDALQAKLLIMETTFLDDAVTIQHAREYGHTHLSEVIKYA 251
>gi|414885984|tpg|DAA61998.1| TPA: hypothetical protein ZEAMMB73_377552 [Zea mays]
Length = 248
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 130/200 (65%), Positives = 166/200 (83%)
Query: 46 KSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFD 105
K AG LS + RA+ +EEEYR+ARA V RKG+++EGY IEG+S+GGHETC+ +P L AFD
Sbjct: 49 KGAGLLSVLDRAMADEEEYRRARAQVQRKGVEVEGYAIEGISVGGHETCITVPSLNVAFD 108
Query: 106 IGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI 165
IGR P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPPT+FVPP I++DVE L ++
Sbjct: 109 IGRGPQFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPTVFVPPCIRDDVEDLLQV 168
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
HR +EL ++LVALD+GETYE+RND+V RPF+T+H IPSQGYVIY +R+KLKKQY HL
Sbjct: 169 HRRTSQIELKVELVALDLGETYEIRNDLVARPFQTYHTIPSQGYVIYSIRRKLKKQYAHL 228
Query: 226 KGKQIEKLKKSGVEITDIIL 245
KG QI KLK+SG E++ +L
Sbjct: 229 KGSQIMKLKQSGTEVSCEVL 248
>gi|224035051|gb|ACN36601.1| unknown [Zea mays]
Length = 221
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 140/220 (63%), Positives = 170/220 (77%), Gaps = 25/220 (11%)
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
MY+A+RGLYNLKPPT+FVPP I++DVE L ++HR +EL ++LVALD+GETYE+RND+
Sbjct: 1 MYIATRGLYNLKPPTVFVPPCIRDDVEDLLQVHRRTSQIELKVELVALDLGETYEIRNDL 60
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
V RPF+T+H IPSQGYVIY +R+KLKKQY HLKG QI KLK+SG EITD IL PEVAFTG
Sbjct: 61 VARPFQTYHTIPSQGYVIYSIRRKLKKQYAHLKGSQIMKLKQSGTEITDTILYPEVAFTG 120
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLS-------------- 299
DT S+F+L+PRNADALRAK+LITEATFLDD + +EHA++HGH HLS
Sbjct: 121 DTKSDFILDPRNADALRAKVLITEATFLDDHVDVEHAREHGHMHLSEIMEHFQWFRNETI 180
Query: 300 -----------EDIRQAVLKLQSKVSAKVVPLTEGFKSVY 328
EDIRQAV +LQ K+++KVV LTEGFKS Y
Sbjct: 181 VLTHFSNRYSLEDIRQAVSRLQPKLNSKVVALTEGFKSDY 220
>gi|242060950|ref|XP_002451764.1| hypothetical protein SORBIDRAFT_04g007440 [Sorghum bicolor]
gi|241931595|gb|EES04740.1| hypothetical protein SORBIDRAFT_04g007440 [Sorghum bicolor]
Length = 320
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 134/266 (50%), Positives = 193/266 (72%), Gaps = 12/266 (4%)
Query: 65 RKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHG 124
R+ RA R +++EGY +EG+SI GHETCV+ P L AFDIGRCP A+ Q+F+F++H
Sbjct: 32 RRPRATQQR--LEIEGYHVEGISIAGHETCVMFPSLNLAFDIGRCPPLAVSQDFLFVSHA 89
Query: 125 HLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVG 184
H+DHIGGLP+YVA+RG ++PPT+FVP + + V +LF++HR++ +L+ LV L+VG
Sbjct: 90 HMDHIGGLPVYVATRGRRRMRPPTVFVPACLADLVRRLFDVHRAMDQSDLDHKLVPLEVG 149
Query: 185 ETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDII 244
E Y++ D+ VRPF+T+HV GYVIY +++KLK++Y L GK++ LKKSGVEIT++
Sbjct: 150 EEYQLTKDLSVRPFRTYHV----GYVIYKVKQKLKEEYAGLPGKELSNLKKSGVEITNVE 205
Query: 245 LSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQ 304
+PE+AF+GDT S+F+L+P NAD L+AKIL+ E+TF+DD SIE A++ GH HLSE
Sbjct: 206 STPEIAFSGDTMSDFILDPDNADVLKAKILVVESTFIDDSKSIEDARERGHIHLSE---- 261
Query: 305 AVLKLQSKVSAKVVPLTEGFKSVYTS 330
++ L K+ K + L F YT+
Sbjct: 262 -IVSLSDKLKNKAILLNH-FSLRYTA 285
>gi|194699558|gb|ACF83863.1| unknown [Zea mays]
gi|414885982|tpg|DAA61996.1| TPA: hypothetical protein ZEAMMB73_377552 [Zea mays]
Length = 279
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 130/231 (56%), Positives = 166/231 (71%), Gaps = 31/231 (13%)
Query: 46 KSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFD 105
K AG LS + RA+ +EEEYR+ARA V RKG+++EGY IEG+S+GGHETC+ +P L AFD
Sbjct: 49 KGAGLLSVLDRAMADEEEYRRARAQVQRKGVEVEGYAIEGISVGGHETCITVPSLNVAFD 108
Query: 106 IGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI 165
IGR P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPPT+FVPP I++DVE L ++
Sbjct: 109 IGRGPQFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPTVFVPPCIRDDVEDLLQV 168
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQ------------------ 207
HR +EL ++LVALD+GETYE+RND+V RPF+T+H IPSQ
Sbjct: 169 HRRTSQIELKVELVALDLGETYEIRNDLVARPFQTYHTIPSQVLLLRASRHLFFVICHDL 228
Query: 208 -------------GYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIIL 245
GYVIY +R+KLKKQY HLKG QI KLK+SG E++ +L
Sbjct: 229 MPIDIIHPMNGVKGYVIYSIRRKLKKQYAHLKGSQIMKLKQSGTEVSCEVL 279
>gi|168005121|ref|XP_001755259.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693387|gb|EDQ79739.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 354
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 120/225 (53%), Positives = 167/225 (74%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
+++ G++IEGVS+GG ETCV++P LK AFD GRCP R I ++VFITH H+DHIGGL MY
Sbjct: 62 LEVGGFSIEGVSVGGQETCVMLPALKVAFDSGRCPGRIIDMDYVFITHAHMDHIGGLTMY 121
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
+ASRGL K PT+ VP IK VEKL + R L L ++L+ +D+GE +++ ++V
Sbjct: 122 IASRGLKKKKVPTVIVPKCIKATVEKLLAVQRELDESPLPVNLIGMDIGEEFDLGKGLIV 181
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
+ FKT+HV+PSQGYVIY +++KLK +++ L GK+I+ L++SGVE+++ + EVAFTGDT
Sbjct: 182 KAFKTYHVVPSQGYVIYTVKQKLKAEHVGLPGKEIKALRESGVEVSETVRISEVAFTGDT 241
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
TS F L+ N D L AK+LI E+TFLDD S+E A ++GH HL E
Sbjct: 242 TSGFFLDEANEDVLHAKLLIMESTFLDDSTSVEDANKYGHMHLFE 286
>gi|388493940|gb|AFK35036.1| unknown [Lotus japonicus]
Length = 210
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 123/183 (67%), Positives = 149/183 (81%), Gaps = 3/183 (1%)
Query: 1 MQLSLPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSISRAIDE 60
MQ+SL S + IFPFH P+ P + H +SL + LNA+K +G+LS+IS+AID
Sbjct: 1 MQISLTNSAFETLKIFPFHQPIFPQKPPNHHQVSLPTQ---LNAVKGSGYLSNISKAIDY 57
Query: 61 EEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVF 120
EE+Y+ A++ V RKG++LEGY+IEG+SIGG ETC+II E KCAFDIGRCPTRAI QNFVF
Sbjct: 58 EEQYKLAKSQVHRKGLNLEGYSIEGLSIGGQETCIIIHEFKCAFDIGRCPTRAIHQNFVF 117
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVA 180
ITH HLDHIGGLPMY+ASRGLYNLKP T+FVPP IKEDVEKL +IHR+LG VELN++LVA
Sbjct: 118 ITHAHLDHIGGLPMYIASRGLYNLKPATVFVPPCIKEDVEKLLDIHRTLGQVELNVELVA 177
Query: 181 LDV 183
LDV
Sbjct: 178 LDV 180
>gi|125581291|gb|EAZ22222.1| hypothetical protein OsJ_05878 [Oryza sativa Japonica Group]
Length = 270
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 165/238 (69%), Gaps = 33/238 (13%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
+ +EGY +EG+SIGG ETCVI P L AFDIGRCP RA+ Q F+FI+H HLDHIGGLPMY
Sbjct: 29 LTVEGYPVEGISIGGQETCVIFPTLSAAFDIGRCPQRAVSQEFLFISHAHLDHIGGLPMY 88
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGLY +PPTIF+P +++ VE+LFE+HRS+ EL+ +LV L++G+ +E+R D+ V
Sbjct: 89 VATRGLYRQRPPTIFIPACLRDPVERLFELHRSMDQSELSHNLVPLEIGQEHELRRDLKV 148
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
+ FKT+H IPSQ IT+ + PE+AFTGDT
Sbjct: 149 KAFKTYHAIPSQ--------------------------------ITNTLTVPEIAFTGDT 176
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
++F+L+P NAD L+AKIL+ E+TF+DD ++IEHA+++GHTHL E + Q KL++K
Sbjct: 177 MADFILDPDNADVLKAKILVVESTFVDDSVTIEHAREYGHTHLFEILNQCD-KLENKA 233
>gi|41017597|sp|P60193.1|RNZN_WHEAT RecName: Full=Nuclear ribonuclease Z; Short=RNase Z; AltName:
Full=Zinc phosphodiesterase ELAC; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
Length = 176
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 107/169 (63%), Positives = 139/169 (82%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
+++EGY +EG+SIGGHETCVI P L AFDIGRCP RA+ Q+F+FI+H HLDHIGGLPMY
Sbjct: 7 LEIEGYPVEGISIGGHETCVIFPTLSLAFDIGRCPQRAVAQDFLFISHAHLDHIGGLPMY 66
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGLY L+PPTIFVP ++E VE+LF++HR++ ELN LV LD+GE YE+R D+ V
Sbjct: 67 VATRGLYRLRPPTIFVPKYLRELVERLFDVHRAMDQSELNHTLVPLDIGEEYELRRDLKV 126
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDII 244
R FKT+H IPSQGYVIY +++KLK+ Y+ L G +I++LK SGVEIT+ +
Sbjct: 127 RAFKTYHTIPSQGYVIYSVKQKLKQDYLGLPGSEIKRLKLSGVEITNTV 175
>gi|357494721|ref|XP_003617649.1| Nuclear ribonuclease Z [Medicago truncatula]
gi|355518984|gb|AET00608.1| Nuclear ribonuclease Z [Medicago truncatula]
Length = 412
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 103/167 (61%), Positives = 133/167 (79%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
KG+++EGY +EG+SIGGHETCVI + AFDIGRCP RA+ +F+ I+H H+DHIGGLP
Sbjct: 18 KGLNIEGYQVEGLSIGGHETCVIFSNFRVAFDIGRCPPRAVSMDFLLISHAHMDHIGGLP 77
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
MYVA+RGLY +KPPTI VP S+KEDVEKLFEIHR + EL +L+ LDVGE + +R D+
Sbjct: 78 MYVATRGLYRMKPPTIIVPISVKEDVEKLFEIHRKMDQSELKHNLIGLDVGEEFSLRQDL 137
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEI 240
V+ F+T+HVIPSQGY++Y ++ KLK +YI L G +I+KLK SGVE
Sbjct: 138 KVKAFRTYHVIPSQGYILYSVKNKLKPEYIGLSGDEIKKLKFSGVEF 184
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 25/111 (22%)
Query: 239 EITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
+IT+ + PE+AFTGDT S+F+++ N D LRAK+L+ E+TF+++EM++EHA+ +GHTHL
Sbjct: 302 QITNTLKEPEIAFTGDTMSDFIIDENNTDVLRAKVLVLESTFVNNEMTVEHARDYGHTHL 361
Query: 299 S-------------------------EDIRQAVLKLQSKVSAKVVPLTEGF 324
S E+I+QAV L ++ + LTEGF
Sbjct: 362 SEIISYADKLQNKAILLIHFSARYTVEEIQQAVSALPPPLAGRTFALTEGF 412
>gi|145352107|ref|XP_001420399.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580633|gb|ABO98692.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 313
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 157/237 (66%), Gaps = 1/237 (0%)
Query: 77 DLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYV 136
+L GY IEGVS+GG ET V++P L AFD GRCP R + + + ++H H+DH+GG MY+
Sbjct: 39 ELAGYKIEGVSVGGRETSVVLPALGVAFDSGRCPQRCVYADVMCLSHTHMDHVGGCGMYI 98
Query: 137 ASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVR 196
A+RGL +L PPT+ +P + +E E R+L + ELN + +D GE Y M +
Sbjct: 99 ATRGLLSLTPPTVLLPSARREAFGTFIESLRALDDSELNHRAIGIDPGERYAMNKLFEIA 158
Query: 197 PFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTT 256
F+T H +PSQGYV+Y ++KLK Y L G +I++L+ G ++TD + PEVAFTGDTT
Sbjct: 159 AFRTRHPVPSQGYVVYGTKQKLKPAYAGLSGPEIKRLRDDGEQVTDKVEVPEVAFTGDTT 218
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
+++ +P NADALRAK+LI E TF+DD +S A++ GHTH+ +DI K Q++
Sbjct: 219 GDWIDDPANADALRAKLLIMECTFIDDAVSKHDAERFGHTHI-DDIVARADKFQNEA 274
>gi|413925891|gb|AFW65823.1| hypothetical protein ZEAMMB73_730401 [Zea mays]
gi|413925892|gb|AFW65824.1| hypothetical protein ZEAMMB73_730401 [Zea mays]
Length = 197
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 100/161 (62%), Positives = 133/161 (82%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
I++EGY ++GVSIGG ETCVI P L AFDIGRCP RA+ Q F+F++HGHLDHIGGLPMY
Sbjct: 29 IEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVSHGHLDHIGGLPMY 88
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGL+ L+PPTIFVP +++ VE+LFE+HR++ ELN +LV L+VGE YE+R D+ V
Sbjct: 89 VATRGLFRLRPPTIFVPACLRDLVERLFEVHRAMDQSELNHNLVPLEVGEEYELRRDLKV 148
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
R F+T+H IPSQGYVIY +++KLK+++I L G +I++LK S
Sbjct: 149 RAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKRLKLS 189
>gi|308809015|ref|XP_003081817.1| RNase Z (ISS) [Ostreococcus tauri]
gi|116060284|emb|CAL55620.1| RNase Z (ISS) [Ostreococcus tauri]
Length = 289
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 152/226 (67%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
GY IEG+S+GG +T VI+P L FD GRCP R++ + + ++H H+DHIGG MYVA+R
Sbjct: 18 GYEIEGISVGGQQTSVIVPRLSLCFDSGRCPQRSVYADHMCVSHTHMDHIGGCGMYVATR 77
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
GL L PP I +P + + R+L + EL + + ++ GE + M + PFK
Sbjct: 78 GLLKLSPPKILLPKRRVDAFATFMDAMRALDDSELRHEAIGIEPGERFAMSKLFEIAPFK 137
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
T H +PSQGY++Y ++KLK +Y L G I+KL+++GV +TD + PEVAFTGDTT+ +
Sbjct: 138 TTHPVPSQGYIVYGTKQKLKSEYAGLDGGDIKKLRENGVIVTDKVEVPEVAFTGDTTAAW 197
Query: 260 MLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
+ +P N DALRAK+LI E TF+DD +S E A+++GHTH+ + I +A
Sbjct: 198 IDDPANVDALRAKLLIMECTFVDDSVSKEDAEEYGHTHIDDLISRA 243
>gi|224034447|gb|ACN36299.1| unknown [Zea mays]
Length = 197
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 99/161 (61%), Positives = 132/161 (81%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
I++EGY ++GVSIGG ETCVI P L AFDIGRCP RA+ Q F+F++HGHLDHIGGLPMY
Sbjct: 29 IEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVSHGHLDHIGGLPMY 88
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGL+ L+PPTI VP +++ VE+LFE+HR++ ELN +LV L+VGE YE+R D+ V
Sbjct: 89 VATRGLFRLRPPTICVPACLRDLVERLFEVHRAMDQSELNHNLVPLEVGEEYELRRDLKV 148
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
R F+T+H IPSQGYVIY +++KLK+++I L G +I++LK S
Sbjct: 149 RAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKRLKLS 189
>gi|255073987|ref|XP_002500668.1| predicted protein [Micromonas sp. RCC299]
gi|226515931|gb|ACO61926.1| predicted protein [Micromonas sp. RCC299]
Length = 297
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 148/225 (65%), Gaps = 2/225 (0%)
Query: 78 LEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVA 137
L GY IEG+S+GG ETC+I+P+LK AFD GRCP R + + + ++H HLDH+GG Y+A
Sbjct: 22 LAGYKIEGISVGGQETCIILPQLKIAFDSGRCPQRCVYADTLCLSHTHLDHVGGAGHYIA 81
Query: 138 SRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRP 197
+R L +L PPT+ +P + E R+L EL V ++ GET+ + VRP
Sbjct: 82 TRSLLSLPPPTVLLPAQRADAFEAYVASLRALDGSELPHVAVPIEPGETHVLSKLHCVRP 141
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTS 257
F T H + SQGYV+Y ++KL+++Y L G++I+ L+ +G +TD I PEVAFTGD +
Sbjct: 142 FPTTHPVASQGYVVYGTKRKLREEYAGLSGQEIKALRDAGTVVTDSIEVPEVAFTGDASG 201
Query: 258 EFMLN--PRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
E+ + P DALRAK+LI E TF+DD + +E A+++GHTH+ E
Sbjct: 202 EWTRSDHPVARDALRAKLLICECTFVDDAVDVEGAREYGHTHIDE 246
>gi|357121275|ref|XP_003562346.1| PREDICTED: LOW QUALITY PROTEIN: nuclear ribonuclease Z-like
[Brachypodium distachyon]
Length = 259
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/223 (47%), Positives = 149/223 (66%), Gaps = 30/223 (13%)
Query: 127 DHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGET 186
DH+ YVA+R L+PPTIF+P + E VE+LFE++R++ EL LV L++G+
Sbjct: 42 DHV-----YVAAREFLRLRPPTIFIPACLAEPVERLFEVYRAISRSELKHILVPLELGQE 96
Query: 187 YEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILS 246
YE R D+ VR FKT+HVIPSQGYVIY + +KLK+++I L G +I++LK SGVEIT+ + +
Sbjct: 97 YEFRRDLKVRAFKTYHVIPSQGYVIYTMNQKLKQEFIGLPGTEIKRLKLSGVEITNTVST 156
Query: 247 PEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL-------- 298
PE+AFTGDTTSEF+L+P N+D L AKIL+ E+TFLD+ +S+EHA+++GHTHL
Sbjct: 157 PEIAFTGDTTSEFILDPNNSDVLXAKILVVESTFLDNSISVEHAREYGHTHLFEVASQSE 216
Query: 299 -----------------SEDIRQAVLKLQSKVSAKVVPLTEGF 324
SE+I A+ L + ++V L EGF
Sbjct: 217 KLGNKAIVLMHFSPRYTSEEIDAAINTLSPALRSRVYALKEGF 259
>gi|303290104|ref|XP_003064339.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453937|gb|EEH51244.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 294
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 150/242 (61%), Gaps = 19/242 (7%)
Query: 78 LEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVA 137
L G+ +EGVS+GG ETCVI+P+LK AFD GRCP RA+ + + ++H H+DH+GG Y+A
Sbjct: 1 LAGFRVEGVSVGGQETCVILPQLKIAFDSGRCPQRAVYADTLCLSHTHMDHVGGAGFYIA 60
Query: 138 SRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV---ELNLDLVALDVGETYEMRNDIV 194
SR L +L PP++ +P + RSL + EL LV + GET+ + V
Sbjct: 61 SRALVSLPPPSVLIPAEARSRAAAFDAFIRSLRELDASELPHHLVPISPGETHVVSKLHV 120
Query: 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD 254
VRPF+T H + SQGYV+Y ++KLK ++ G QI+ L+ +G ++TD I PEVAFTGD
Sbjct: 121 VRPFQTIHPVASQGYVVYGTKEKLKAEHAGKTGAQIKALRDAGAKVTDTIEVPEVAFTGD 180
Query: 255 TTSEFM----------------LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
T++E++ ++ DALRAK+LI E TF+DD +S E A+ GHTH+
Sbjct: 181 TSAEWIRRATATATEGGEGEGDVDVVARDALRAKLLICECTFVDDAVSPEGARDFGHTHI 240
Query: 299 SE 300
E
Sbjct: 241 DE 242
>gi|159489028|ref|XP_001702499.1| nuclear RNase Z [Chlamydomonas reinhardtii]
gi|158280521|gb|EDP06278.1| nuclear RNase Z [Chlamydomonas reinhardtii]
Length = 335
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 146/234 (62%), Gaps = 4/234 (1%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
+ + G+ +EG+SI G ET +I+P K FDIGRCP RA Q V ++H HLDH+GGLP +
Sbjct: 56 LAVSGWELEGISISGQETSIIVPRAKVTFDIGRCPQRACFQQTVLLSHTHLDHVGGLPFH 115
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL-GNVELNLDLVALDVGETYEMRNDIV 194
V +R + L P + VP V KL + L + ++ +++ L+ G+ +E+ + +
Sbjct: 116 VCTRNMLQLPPSKVVVPQGFSAGVRKLMDAVLELQSSPPIDYEVLELEAGQDFELPSGFL 175
Query: 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD 254
R F T H IPSQGYV+Y RKKLK + +I++L+ SGV++++ PE+AFTGD
Sbjct: 176 CRTFPTTHAIPSQGYVLYSQRKKLKAELQGKSQAEIKELRFSGVDVSETHQVPEIAFTGD 235
Query: 255 TTSEFMLNPRNA---DALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
TTS F+ NA DAL+AK+L E TF+ +++++E A+ GH H+++ + A
Sbjct: 236 TTSAFLDAETNATLEDALKAKVLCIEMTFISEDVTVEEARGKGHMHITDFVAHA 289
>gi|412990070|emb|CCO20712.1| predicted protein [Bathycoccus prasinos]
Length = 300
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 147/229 (64%), Gaps = 6/229 (2%)
Query: 78 LEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVA 137
L G+ IEG+SIGG ET +I P+LK FD GRC R + + + +TH H+DHIGGL MY+A
Sbjct: 17 LSGFNIEGLSIGGQETSIIFPQLKLCFDSGRCYQRCVYADTMCLTHTHMDHIGGLGMYIA 76
Query: 138 SRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLV--ALDVGETYEMRN-DIV 194
SR L +L PPTI VP S E + + R L + +L +++ A Y M+N +
Sbjct: 77 SRNLLSLPPPTILVPESKIEAISNFIDALRVLDDSDLPHEMIPFAPSAETCYSMKNKNYK 136
Query: 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD 254
++ F+T H I SQGYVI ++KLK +Y+ LKG +I+ LK GVEITD + PE+ FTGD
Sbjct: 137 IKAFETVHPIASQGYVILSTKQKLKDEYLSLKGSEIKALKDDGVEITDTVDVPEIMFTGD 196
Query: 255 TTSEFM-LNPRNA--DALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
TT +F+ +P+ + L+++++ E TF +D++S A++ GHTH+ +
Sbjct: 197 TTMDFLHSSPQEVIQEGLKSRLVCLECTFFNDDVSPADAKRFGHTHVRD 245
>gi|413933024|gb|AFW67575.1| hypothetical protein ZEAMMB73_773613 [Zea mays]
Length = 375
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 122/157 (77%)
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
MYVA+RGL+ L PPTIFVP +++ VE+LFE+HR++ ELN +LV L+VGE YE+R D+
Sbjct: 1 MYVATRGLFRLCPPTIFVPACLRDFVERLFEVHRAMDQSELNHNLVPLEVGEEYELRRDL 60
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
VR F+T+H IPSQGYVIY +++KLK+++I L G +I++LK SGVEIT+ + +PE+AF G
Sbjct: 61 KVRAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKRLKLSGVEITNTVSTPEIAFIG 120
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHA 290
DTT++F+L+P NAD L+AKIL+ E + S H+
Sbjct: 121 DTTADFILDPDNADVLQAKILVVEEQRGGNAASQSHS 157
>gi|302836959|ref|XP_002950039.1| hypothetical protein VOLCADRAFT_80918 [Volvox carteri f.
nagariensis]
gi|300264512|gb|EFJ48707.1| hypothetical protein VOLCADRAFT_80918 [Volvox carteri f.
nagariensis]
Length = 268
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 134/219 (61%), Gaps = 4/219 (1%)
Query: 91 HETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIF 150
ET +I P K FDIGRCP RA Q V ++H HLDH+GGLP +V +R + +L +
Sbjct: 4 QETSIIFPRGKVTFDIGRCPQRACFQQTVLLSHAHLDHVGGLPFHVCTREMLSLPASRVV 63
Query: 151 VPPSIKEDVEKLFEIHRSL-GNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
VP V KL + R L G+ L+ ++ L +GE + + + + R F T H I SQGY
Sbjct: 64 VPQGFAAGVRKLVDAARELQGSPPLDYQVLELQLGEDHVLPSGYLCRCFPTTHTITSQGY 123
Query: 210 VIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNA--- 266
V+Y R+KLK + ++I +L+ +G ++TD + PE+AFTGDTT+ F+ P A
Sbjct: 124 VLYSQRRKLKAELQGKSQEEIRQLRLAGQDVTDTVAVPEIAFTGDTTAGFLDGPGCATLE 183
Query: 267 DALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
DAL+A++LI E TFL D+++++ A+ GH H+++ + A
Sbjct: 184 DALKARVLIMEMTFLCDDVTVDEARDKGHMHIADFVANA 222
>gi|406830995|ref|ZP_11090589.1| hypothetical protein SpalD1_05142 [Schlesneria paludicola DSM
18645]
Length = 279
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 132/228 (57%), Gaps = 4/228 (1%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+G TIEG S ++ IPELK FD+G P + +FITH HLDH+ LP+YVA
Sbjct: 13 DGLTIEGYSRAAVQSYWRIPELKLGFDLGGSPWDFMNVPTIFITHAHLDHMAALPVYVAR 72
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
R + ++PPTI++P E ++L ++ + L + LV + G+ E+ D VV F
Sbjct: 73 RRMMKMEPPTIYLPEENVEWADRLLKVWQRLDRGRMVCQLVGVKPGQEIELSRDHVVTTF 132
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
+T H +PS GY+++ RKKLK QY + G +I L+KSGV++T + +P V +TGDT
Sbjct: 133 ETRHTVPSVGYLVWQRRKKLKLQYQSMSGNEIRDLRKSGVDVTHEVRTPLVCYTGDTAPP 192
Query: 259 FMLNPRNADAL-RAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
+ N AL AKILITE TF + E + GHTHL + I +A
Sbjct: 193 GL---DNYPALYEAKILITEMTFFRPDHRKEKIYKFGHTHLDDIIERA 237
>gi|392403499|ref|YP_006440111.1| metallo-beta-lactamase [Turneriella parva DSM 21527]
gi|390611453|gb|AFM12605.1| metallo-beta-lactamase [Turneriella parva DSM 21527]
Length = 277
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 128/232 (55%), Gaps = 2/232 (0%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL 141
+ + GG ETC I+P + AFD GRCP I VF+THGHLDH GLP Y++ R L
Sbjct: 10 AVNAIGRGGIETCYILPAFQLAFDTGRCPDGLIDMPRVFLTHGHLDHSAGLPYYISQRSL 69
Query: 142 YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTH 201
+L PP I+ P I + ++ + + + E + L L G+ +R D+ VR +
Sbjct: 70 RHLPPPEIYCPAEIVAPLREILHLWQKIEGFEYPVALKGLSPGDEIPVRKDLYVRALASS 129
Query: 202 HVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFML 261
H +P +GY + +KLK +Y+ + G++I+++K G I + P AF+GDTT EF+
Sbjct: 130 HRVPCRGYALVRKTRKLKDEYLTVNGREIKRMKDRGEAIFEDRDIPIFAFSGDTTIEFLQ 189
Query: 262 NPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
+ N A A +L E T++DD+ + A++ GH HL E I A L K+
Sbjct: 190 D--NQAAREATVLFIECTYIDDKRPVARAREWGHIHLDEIIAHAHLFKNEKI 239
>gi|418697308|ref|ZP_13258301.1| beta-lactamase family protein [Leptospira kirschneri str. H1]
gi|421109211|ref|ZP_15569735.1| beta-lactamase family protein [Leptospira kirschneri str. H2]
gi|409954810|gb|EKO13758.1| beta-lactamase family protein [Leptospira kirschneri str. H1]
gi|410005731|gb|EKO59518.1| beta-lactamase family protein [Leptospira kirschneri str. H2]
Length = 275
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 130/220 (59%), Gaps = 2/220 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH GLP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLLLTHSHLDHSSGLPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IFVP +++ + K+ +++ + N + +L A+ G+ ++ ++ P +T
Sbjct: 70 LRKLKPPRIFVPAPLEKPMRKILDLYSEIENFTYSYELSAVSPGDKIDLDSNHFFSPHQT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ + ++ + K +E++++ P ++F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQKRKKLKKEFQSISQNELNQALKEKIEVSELSEIPVISFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
L + D + IL E T++DDE ++ A++ GHTHL E
Sbjct: 190 L--EHEDVANSSILFIECTYIDDERNVAQAREWGHTHLDE 227
>gi|410942651|ref|ZP_11374426.1| beta-lactamase family protein [Leptospira noguchii str. 2006001870]
gi|410782289|gb|EKR71305.1| beta-lactamase family protein [Leptospira noguchii str. 2006001870]
Length = 275
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH GLP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLLLTHSHLDHSCGLPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IFVP +KE ++K+ +++ + N +L A+ G+ ++ ++ P +T
Sbjct: 70 LRKLKPPKIFVPAPLKEPMQKILDLYSEIENFTYAYELYAVSPGDKIDLDSNHFFSPHQT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ L ++ + K E++++ P ++F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQKRKKLKKEFQSLSQDELNQALKEKREVSELSEIPVISFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
L + D + IL E T++D+E ++ A++ GHTHL E
Sbjct: 190 LE--HEDVANSSILFIECTYIDEERNVAQAREWGHTHLDE 227
>gi|296123238|ref|YP_003631016.1| hypothetical protein Plim_2995 [Planctomyces limnophilus DSM 3776]
gi|296015578|gb|ADG68817.1| Nuz [Planctomyces limnophilus DSM 3776]
Length = 279
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 131/236 (55%), Gaps = 11/236 (4%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL 141
TIEG S ++ IPELK FD+G P I FITH HLDH+ LP YVA R +
Sbjct: 16 TIEGWSRAAVQSYWRIPELKIGFDLGGSPWDFIGIPTFFITHAHLDHMAALPAYVARRRM 75
Query: 142 YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTH 201
L+PPT++VP ++ EDVE++ + L + ++L+ + +E+ + VV F T
Sbjct: 76 MKLEPPTVYVPEAVVEDVERMLRAWQKLDRGRMLVNLIGVGENSEFELGREWVVTSFPTK 135
Query: 202 HVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFML 261
H +PS GYV++ R KLK +Y L G +I L+ +G E+T + +P +A+TGDT
Sbjct: 136 HTVPSVGYVVWNRRMKLKPEYHGLSGDEIRDLRLAGNEVTAEVRTPWIAYTGDTA----- 190
Query: 262 NPRNADAL----RAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
P DA +AK+LITE TF E E + GH HL +D + + Q++V
Sbjct: 191 -PAGLDACEAIYQAKVLITEMTFFRPEHRREKVHKFGHLHL-DDFVERKDRFQNEV 244
>gi|398339983|ref|ZP_10524686.1| metallo-beta-lactamase [Leptospira kirschneri serovar Bim str.
1051]
gi|418677210|ref|ZP_13238486.1| beta-lactamase family protein [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418686998|ref|ZP_13248161.1| beta-lactamase family protein [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|421130521|ref|ZP_15590715.1| beta-lactamase family protein [Leptospira kirschneri str.
2008720114]
gi|400322158|gb|EJO70016.1| beta-lactamase family protein [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410358220|gb|EKP05401.1| beta-lactamase family protein [Leptospira kirschneri str.
2008720114]
gi|410738394|gb|EKQ83129.1| beta-lactamase family protein [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
Length = 275
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH GLP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLLLTHSHLDHSSGLPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IFVP +++ + K+ +++ + N +L A+ G+ ++ ++ P +T
Sbjct: 70 LRKLKPPRIFVPAPLEKPMRKILDLYSEIENFTYAYELSAVSPGDKIDLDSNHFFSPHQT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ + ++ + K +E++++ P ++F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQKRKKLKKEFQSISQNELNQALKEKIEVSELSEIPVISFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
L + D + IL E T++DDE ++ A++ GHTHL E
Sbjct: 190 L--EHEDVANSSILFIECTYIDDERNVAQAREWGHTHLDE 227
>gi|24216098|ref|NP_713579.1| metallo-beta-lactamase [Leptospira interrogans serovar Lai str.
56601]
gi|45656664|ref|YP_000750.1| hypothetical protein LIC10770 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386075158|ref|YP_005989478.1| metallo-beta-lactamase [Leptospira interrogans serovar Lai str.
IPAV]
gi|417758987|ref|ZP_12407026.1| beta-lactamase family protein [Leptospira interrogans str.
2002000624]
gi|417767389|ref|ZP_12415330.1| beta-lactamase family protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|417769184|ref|ZP_12417103.1| beta-lactamase family protein [Leptospira interrogans serovar
Pomona str. Pomona]
gi|417775147|ref|ZP_12423006.1| beta-lactamase family protein [Leptospira interrogans str.
2002000621]
gi|417786493|ref|ZP_12434183.1| beta-lactamase family protein [Leptospira interrogans str. C10069]
gi|418666847|ref|ZP_13228266.1| beta-lactamase family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|418674574|ref|ZP_13235874.1| beta-lactamase family protein [Leptospira interrogans str.
2002000623]
gi|418681574|ref|ZP_13242800.1| beta-lactamase family protein [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|418693070|ref|ZP_13254135.1| beta-lactamase family protein [Leptospira interrogans str. FPW2026]
gi|418699160|ref|ZP_13260126.1| beta-lactamase family protein [Leptospira interrogans serovar
Bataviae str. L1111]
gi|418707060|ref|ZP_13267896.1| beta-lactamase family protein [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418711705|ref|ZP_13272460.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418714788|ref|ZP_13275280.1| beta-lactamase family protein [Leptospira interrogans str. UI
08452]
gi|418723543|ref|ZP_13282382.1| beta-lactamase family protein [Leptospira interrogans str. UI
12621]
gi|418730253|ref|ZP_13288754.1| beta-lactamase family protein [Leptospira interrogans str. UI
12758]
gi|421084350|ref|ZP_15545211.1| beta-lactamase family protein [Leptospira santarosai str. HAI1594]
gi|421101177|ref|ZP_15561791.1| beta-lactamase family protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421117220|ref|ZP_15577588.1| beta-lactamase family protein [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|421122253|ref|ZP_15582537.1| beta-lactamase family protein [Leptospira interrogans str. Brem
329]
gi|421127386|ref|ZP_15587610.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421136526|ref|ZP_15596631.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|24197338|gb|AAN50597.1| metallo-beta-lactamase [Leptospira interrogans serovar Lai str.
56601]
gi|45599900|gb|AAS69387.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353458950|gb|AER03495.1| metallo-beta-lactamase [Leptospira interrogans serovar Lai str.
IPAV]
gi|400326724|gb|EJO78987.1| beta-lactamase family protein [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|400350127|gb|EJP02405.1| beta-lactamase family protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400357026|gb|EJP13180.1| beta-lactamase family protein [Leptospira interrogans str. FPW2026]
gi|409945087|gb|EKN90665.1| beta-lactamase family protein [Leptospira interrogans str.
2002000624]
gi|409948927|gb|EKN98912.1| beta-lactamase family protein [Leptospira interrogans serovar
Pomona str. Pomona]
gi|409950115|gb|EKO04644.1| beta-lactamase family protein [Leptospira interrogans str. C10069]
gi|409963243|gb|EKO26972.1| beta-lactamase family protein [Leptospira interrogans str. UI
12621]
gi|410011244|gb|EKO69367.1| beta-lactamase family protein [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410019414|gb|EKO86234.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410344805|gb|EKO95962.1| beta-lactamase family protein [Leptospira interrogans str. Brem
329]
gi|410368973|gb|EKP24347.1| beta-lactamase family protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410433098|gb|EKP77448.1| beta-lactamase family protein [Leptospira santarosai str. HAI1594]
gi|410435476|gb|EKP84608.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410575068|gb|EKQ38091.1| beta-lactamase family protein [Leptospira interrogans str.
2002000621]
gi|410578357|gb|EKQ46218.1| beta-lactamase family protein [Leptospira interrogans str.
2002000623]
gi|410757628|gb|EKR19239.1| beta-lactamase family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410761742|gb|EKR27914.1| beta-lactamase family protein [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410763266|gb|EKR33997.1| beta-lactamase family protein [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410767948|gb|EKR43206.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410774930|gb|EKR54933.1| beta-lactamase family protein [Leptospira interrogans str. UI
12758]
gi|410788962|gb|EKR82667.1| beta-lactamase family protein [Leptospira interrogans str. UI
08452]
gi|455669334|gb|EMF34465.1| beta-lactamase family protein [Leptospira interrogans serovar
Pomona str. Fox 32256]
gi|456822819|gb|EMF71289.1| beta-lactamase family protein [Leptospira interrogans serovar
Canicola str. LT1962]
Length = 275
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH GLP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLLLTHSHLDHSCGLPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LK P IFVP +KE ++K+ +++ + N +L A+ G+ ++ ++ P +T
Sbjct: 70 LRKLKSPKIFVPAPLKEPMQKILDLYSEIENFTYAYELNAVSPGDKIDLDSNHFFSPHQT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ + ++ + K +E++++ P ++F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQKRKKLKKEFQSISQNELNQALKEKIEVSELSEIPVISFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
L + D + IL E T++D+E ++ A++ GHTHL E
Sbjct: 190 L--EHEDVANSSILFIECTYIDNERNVAQAREWGHTHLDE 227
>gi|183220740|ref|YP_001838736.1| putative metallo-hydrolase/oxidoreductase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189910841|ref|YP_001962396.1| metallo-beta-lactamase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167775517|gb|ABZ93818.1| Metallo-beta-lactamase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167779162|gb|ABZ97460.1| Putative metallo-hydrolase/oxidoreductase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 279
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 132/231 (57%), Gaps = 2/231 (0%)
Query: 75 GIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPM 134
+ +G EG+S GG T +I P L FD G I + ++H HLDH G+P
Sbjct: 5 SFEYKGTKFEGISEGGIRTSIICPSLDFMFDFGFINPDKIHIGKILLSHAHLDHSCGIPY 64
Query: 135 YVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIV 194
YV+ R L L P I+VP +++ + ++ +++ + + + + DL+ L+ GE E++
Sbjct: 65 YVSQRSLRKLPKPKIYVPKALEPKLSQILKLYSEIEDFDYDCDLIGLEYGERVELKPGYF 124
Query: 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD 254
+P + H +PSQGY +Y ++KLKK++ + +I K K++G++ T+ + +P V+F+GD
Sbjct: 125 FKPLPSFHRVPSQGYTVYETKRKLKKEFSSMSSDEIRKSKENGLDPTEEVAAPFVSFSGD 184
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
+ E++L N D ++KIL E T+ ++ + A++ GHTH E I A
Sbjct: 185 SKIEYILE--NEDVRKSKILFMECTYYCEKRDVSRAREWGHTHFDEIIEHA 233
>gi|291237107|ref|XP_002738480.1| PREDICTED: TRZ1 (TRNASE Z 1); 3-tRNA processing
endoribonuclease-like [Saccoglossus kowalevskii]
Length = 289
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 136/239 (56%), Gaps = 7/239 (2%)
Query: 76 IDLEGYTIEGVSIGGHETCVII--PELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
+D+ + I SI G ETC+++ +K AFDIG +++ + VFI+HGH+DH+ GL
Sbjct: 1 MDVGNFKIYDWSIAGTETCMVVVTDGMKIAFDIGYSTCQSVGCDHVFISHGHMDHVAGLI 60
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDV----EKLFEIH-RSLGNVELNLDLVALDVGETYE 188
+ + R +KP T +VP +K+ + E+L +H + + + + G+ +
Sbjct: 61 HHASKRSNMRMKPATYYVPCILKQSLLVVAEQLSIMHGKEIDYYKHKAPIEDFKSGQQIK 120
Query: 189 MRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPE 248
+ F T H IPSQGY+++ +R KLK +Y L +I +KKSG+E+T+ PE
Sbjct: 121 LPKSYFATLFPTVHTIPSQGYILWKVRSKLKGEYQGLPSNEIASIKKSGIEVTEQQEYPE 180
Query: 249 VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVL 307
+AFTGDTT E N L+ K+LI E T+LDDE SI A++ GH HL+E + A L
Sbjct: 181 IAFTGDTTFECFQLEGNESVLKVKLLIMECTYLDDETSISEAREKGHLHLNELVEHAEL 239
>gi|325107950|ref|YP_004269018.1| hypothetical protein Plabr_1384 [Planctomyces brasiliensis DSM
5305]
gi|324968218|gb|ADY58996.1| hypothetical protein Plabr_1384 [Planctomyces brasiliensis DSM
5305]
Length = 294
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 128/226 (56%), Gaps = 2/226 (0%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
G TIEG S +T IPELK FD+G P + F++H HLDH+ LP +VA R
Sbjct: 29 GLTIEGYSRAAVQTYWRIPELKLGFDLGGSPWSFMGTPRFFLSHAHLDHMAALPAFVARR 88
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
+ ++PP+I+VP +K DVE+L + L + DL ++ G+ E+ + + +
Sbjct: 89 RMMKMEPPSIWVPAQVKSDVERLLRAWQKLDRGRMVCDLQGVEPGDEIELSREHIALVTE 148
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
T H +PS GY+IY R+KLK ++ L G++I L+ +G ++T + P VA+ GDT+
Sbjct: 149 TKHTVPSVGYIIYDRRRKLKAEFQGLPGEKIRDLRLAGEDVTHEVRVPIVAYLGDTSPPG 208
Query: 260 MLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
+ + D RAKILITE TF E + + GHTHL + + +A
Sbjct: 209 L--DAHPDVYRAKILITEMTFFRPEHRKQKIHKFGHTHLDDILERA 252
>gi|359684873|ref|ZP_09254874.1| metallo-beta-lactamase [Leptospira santarosai str. 2000030832]
gi|410451159|ref|ZP_11305177.1| beta-lactamase family protein [Leptospira sp. Fiocruz LV3954]
gi|418745247|ref|ZP_13301587.1| beta-lactamase family protein [Leptospira santarosai str. CBC379]
gi|418753711|ref|ZP_13309953.1| beta-lactamase family protein [Leptospira santarosai str. MOR084]
gi|421111542|ref|ZP_15572018.1| beta-lactamase family protein [Leptospira santarosai str. JET]
gi|422002686|ref|ZP_16349922.1| metallo-beta-lactamase [Leptospira santarosai serovar Shermani str.
LT 821]
gi|409965982|gb|EKO33837.1| beta-lactamase family protein [Leptospira santarosai str. MOR084]
gi|410014936|gb|EKO77050.1| beta-lactamase family protein [Leptospira sp. Fiocruz LV3954]
gi|410793709|gb|EKR91624.1| beta-lactamase family protein [Leptospira santarosai str. CBC379]
gi|410803152|gb|EKS09294.1| beta-lactamase family protein [Leptospira santarosai str. JET]
gi|417258777|gb|EKT88163.1| metallo-beta-lactamase [Leptospira santarosai serovar Shermani str.
LT 821]
gi|456873492|gb|EMF88867.1| beta-lactamase family protein [Leptospira santarosai str. ST188]
Length = 275
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 126/220 (57%), Gaps = 2/220 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG + + + +TH HLDH LP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRVHLDTLLLTHSHLDHSCALPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IFVP +++E + ++ +++ + + + D+ A+ G+ ++ P KT
Sbjct: 70 LRKLKPPKIFVPVALEEPMRRILDLYSEIEDFSYSYDMKAVSPGDKIDLDQQHFFSPHKT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ L +++ K G E++++ P V+F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQRRKKLKKEFQSLSQEELNLALKQGKEVSELSEIPVVSFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
L + D + IL E T++D E ++ A++ GH HL E
Sbjct: 190 LE--HEDVANSSILFIECTYIDQERNVAQAREWGHIHLDE 227
>gi|320102325|ref|YP_004177916.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Isosphaera pallida ATCC 43644]
gi|319749607|gb|ADV61367.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Isosphaera pallida ATCC 43644]
Length = 293
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 128/226 (56%), Gaps = 2/226 (0%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
G TIEG S +T +PELK FD+G P + F++H HLDHI LP+YV+ R
Sbjct: 28 GLTIEGYSRAAVQTYWRVPELKVGFDLGVQPWSFMTTPTYFVSHTHLDHIAALPVYVSRR 87
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
L ++PPTI++P E V+ L R L L ++ ++ + E+ ++VVR
Sbjct: 88 RLMKMEPPTIYLPSEGVEPVQALLRAMRRLDRGALPAAIIGVEPHQDIELSRELVVRTLP 147
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
T H IPS G+++Y RKKLK +Y L G QI L+ SGVE++ I P+V + GDTT E
Sbjct: 148 TQHTIPSLGFLVYERRKKLKPEYHDLTGDQIRDLRLSGVEVSAEIRIPKVCYLGDTTPEG 207
Query: 260 MLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
+ + D L+A+ILI E TF+ + + GHTHL + + +A
Sbjct: 208 I--DCHPDILKAEILILEMTFVTAQERPALIHKFGHTHLDDILARA 251
>gi|456864030|gb|EMF82459.1| beta-lactamase family protein [Leptospira weilii serovar Topaz str.
LT2116]
Length = 275
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 127/222 (57%), Gaps = 2/222 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH LP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IFVP +++E + ++ +++ + + + D+ A+ G+ ++ P KT
Sbjct: 70 LRKLKPPKIFVPAALEEPMRRILDLYSEIEDFSYSYDMKAVSPGDKIDLDQQHFFSPHKT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ L +++ + K E+++ +P V+F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQRRKKLKKEFQSLPQEELNLVLKQNKEVSEPSETPVVSFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
L + D + IL E T++D E ++ A++ GH HL E I
Sbjct: 190 LE--HEDVASSSILFIECTYIDKERNVAQAREWGHIHLDEII 229
>gi|430743488|ref|YP_007202617.1| beta-lactamase superfamily metal-dependent hydrolase
[Singulisphaera acidiphila DSM 18658]
gi|430015208|gb|AGA26922.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Singulisphaera acidiphila DSM 18658]
Length = 293
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 132/233 (56%), Gaps = 14/233 (6%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+G T+EG S +T IPELK FD+G P + F++H HLDHI LP+YVA
Sbjct: 27 KGLTVEGYSRAAVQTYWRIPELKLGFDLGAQPWSFMSTPTWFLSHTHLDHIAALPVYVAR 86
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
R + ++PPTI++P E VE L + L L LV + G+ E+ ++VV+ F
Sbjct: 87 RRMMKMEPPTIYLPAEAIEAVEMLLRAFQKLDRGRLPAKLVGVVPGQEIELSRELVVKTF 146
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
T H IP+ GY++Y R+KLK +Y L G++I ++ SGVE++ I P+VA+ GDT
Sbjct: 147 ATKHTIPAIGYLVYERRRKLKPEYHDLSGEEIRDIRLSGVEVSTEIRMPKVAYLGDTA-- 204
Query: 259 FMLNPRNADAL----RAKILITEATFL--DDEMSIEHAQQHGHTHLSEDIRQA 305
P D L A+I+I E TF+ D S+ H ++GHTHL + I +A
Sbjct: 205 ----PAGLDGLPDLYHAEIIILEMTFVAPGDRPSLIH--KYGHTHLDDIIARA 251
>gi|348676071|gb|EGZ15889.1| hypothetical protein PHYSODRAFT_316061 [Phytophthora sojae]
Length = 283
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 127/232 (54%), Gaps = 5/232 (2%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
K ++ GY + + G E+C + + AFD+G R + ++ VFITHGH+DHIG L
Sbjct: 4 KVVEAGGYRLHLRCVAGIESCCYVDAVDVAFDLGYLVDRVVSKSHVFITHGHVDHIGALV 63
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL-GNVELNLDLVALDVGETYEMRND 192
+ A R L KP FVP + +E + + ++ G+ LV L + +
Sbjct: 64 AHAARRALQKQKPAQYFVPAHLVPHLESILQSTAAMQGDEPFPAQLVPLQAYDEVHVSPK 123
Query: 193 IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFT 252
+VR T H +PS GY+++ R +LK +Y L G +I LK+SG IT L+PE+A+T
Sbjct: 124 YMVRAVPTTHRVPSLGYILFEKRNRLKSEYRELPGPEIAALKRSGQTITSAELTPEIAYT 183
Query: 253 GDTTSEFML----NPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
GDTT E + R D LR K+LITEAT+ D +M+++ A GH HL +
Sbjct: 184 GDTTIEAFTAASDDERMRDLLRVKVLITEATYADGKMTVQDAVARGHMHLDQ 235
>gi|398331089|ref|ZP_10515794.1| metallo-beta-lactamase [Leptospira alexanderi serovar Manhao 3 str.
L 60]
Length = 275
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 127/222 (57%), Gaps = 2/222 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH LP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IF+P +++E + ++ +++ + + D+ A+ G+ ++ P KT
Sbjct: 70 LRKLKPPKIFLPATLEEPMRRILDLYSEIEDFSYLYDMKAVSPGDKIDLDQQHFFSPHKT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ L +++ + K E++++ +P V+F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQRRKKLKKEFQSLSQEELNLVLKQKKEVSELSETPVVSFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
L + D + IL E T++D E ++ A++ GH HL E I
Sbjct: 190 LE--HEDVASSSILFIECTYIDKERNVAQAREWGHIHLDEII 229
>gi|408794095|ref|ZP_11205700.1| beta-lactamase family protein [Leptospira meyeri serovar Hardjo
str. Went 5]
gi|408461330|gb|EKJ85060.1| beta-lactamase family protein [Leptospira meyeri serovar Hardjo
str. Went 5]
Length = 279
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 129/231 (55%), Gaps = 2/231 (0%)
Query: 75 GIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPM 134
+ +G EG+S GG T +I P L FD G I + ++H HLDH G+P
Sbjct: 5 SFEYKGIKFEGLSEGGIRTSIICPSLDFMFDFGFINPDKIHIGKILLSHAHLDHSCGIPY 64
Query: 135 YVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIV 194
YV+ R L L P I++P S++ + ++ +++ + + + +L+ LD G+ E++
Sbjct: 65 YVSQRSLRKLPIPKIYLPKSLEPKMSQILKLYSEIEDFDYECELIGLDFGDRVELKPGYF 124
Query: 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD 254
+P+++ H +PSQGY +Y ++KLKK++ L ++I K G + T+ I P V+F+GD
Sbjct: 125 FKPWQSFHRVPSQGYTVYETKRKLKKEWTSLSSEEIRNKKDLGEDPTEEISIPLVSFSGD 184
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
T E++L N D ++KIL E T+ ++ + A++ GHTH E + A
Sbjct: 185 TKIEYVLE--NEDVRKSKILFMECTYYCEKRDVNRAREWGHTHFDEIVANA 233
>gi|359728213|ref|ZP_09266909.1| metallo-beta-lactamase [Leptospira weilii str. 2006001855]
Length = 275
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 127/222 (57%), Gaps = 2/222 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH LP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IFVP +++E + ++ +++ + + + ++ A+ G+ ++ P KT
Sbjct: 70 LRKLKPPKIFVPAALEEPMRRILDLYSEIEDFSYSYNMKAVSPGDKIDLDQQHFFSPHKT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ L +++ + K E+++ +P V+F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQRRKKLKKEFQSLPQEELNLVLKQNKEVSEPSETPVVSFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
L + D + IL E T++D E ++ A++ GH HL E I
Sbjct: 190 LE--HEDVASSNILFIECTYIDKERNVAQAREWGHIHLDEII 229
>gi|417779881|ref|ZP_12427658.1| beta-lactamase family protein [Leptospira weilii str. 2006001853]
gi|410780183|gb|EKR64785.1| beta-lactamase family protein [Leptospira weilii str. 2006001853]
Length = 275
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 126/220 (57%), Gaps = 2/220 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH LP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IFVP +++E + ++ +++ + + + ++ A+ G+ ++ P KT
Sbjct: 70 LRKLKPPKIFVPAALEEPMRRILDLYSEIEDFSYSYNMKAVSPGDKIDLDQQHFFSPHKT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ L +++ + K E+++ +P V+F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQRRKKLKKEFQSLPQEELNLVLKQNKEVSEPSETPVVSFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
L + D + IL E T++D E ++ A++ GH HL E
Sbjct: 190 LE--HEDVASSNILFIECTYIDKERNVAQAREWGHIHLDE 227
>gi|359686865|ref|ZP_09256866.1| hypothetical protein LlicsVM_00735 [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418750724|ref|ZP_13307010.1| beta-lactamase family protein [Leptospira licerasiae str. MMD4847]
gi|418757046|ref|ZP_13313234.1| beta-lactamase family protein [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|384116717|gb|EIE02974.1| beta-lactamase family protein [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|404273327|gb|EJZ40647.1| beta-lactamase family protein [Leptospira licerasiae str. MMD4847]
Length = 276
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 126/221 (57%), Gaps = 2/221 (0%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
GY EG+S GG T V++P L FDIG I + +TH HLDH GLP Y++ R
Sbjct: 9 GYLFEGISEGGIRTSVVMPRLSLMFDIGHQNPNRINIERLLLTHAHLDHSAGLPYYISQR 68
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
L L PP I++P +++ + ++ ++ + + ++ LD GE E+ + +K
Sbjct: 69 SLRKLGPPKIYLPKTLEAPMREILSLYSKIEDFPYLYEMKGLDEGEEIEIDAYHFFKIWK 128
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
T H + SQGY IY +KKL+ ++ L ++ K K+ G++I ++ P V+F+GDT E+
Sbjct: 129 TFHRVDSQGYTIYERKKKLRSEFAGLDRNELLKKKEEGIDINEVHSKPLVSFSGDTKIEY 188
Query: 260 MLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
+L + D ++IL E T++D E SIE A++ GH HL E
Sbjct: 189 VLA--HKDVAESEILFLECTYIDHERSIEDAREWGHIHLDE 227
>gi|116327500|ref|YP_797220.1| metallo-beta-lactamase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116331886|ref|YP_801604.1| metallo-beta-lactamase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|418721682|ref|ZP_13280857.1| beta-lactamase family protein [Leptospira borgpetersenii str. UI
09149]
gi|418735728|ref|ZP_13292135.1| beta-lactamase family protein [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|421092503|ref|ZP_15553243.1| beta-lactamase family protein [Leptospira borgpetersenii str.
200801926]
gi|116120244|gb|ABJ78287.1| Metallo-beta-lactamase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116125575|gb|ABJ76846.1| Metallo-beta-lactamase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|410364730|gb|EKP15743.1| beta-lactamase family protein [Leptospira borgpetersenii str.
200801926]
gi|410741843|gb|EKQ90595.1| beta-lactamase family protein [Leptospira borgpetersenii str. UI
09149]
gi|410748585|gb|EKR01482.1| beta-lactamase family protein [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|456887690|gb|EMF98717.1| beta-lactamase family protein [Leptospira borgpetersenii str.
200701203]
Length = 275
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 2/222 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH LP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IF+P +++E + ++ +++ + + + D+ A+ G+ ++ P +T
Sbjct: 70 LRKLKPPKIFLPAALEEPMRRILDLYSEIEDFSYSYDMKAVSPGDKVDLDQQYFFSPHRT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ L +++ K E+++ P V+F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQRRKKLKKEFQSLSQEELNFALKQKKEVSEPSEIPVVSFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
L + D + IL E T++D E ++ A++ GH HL E I
Sbjct: 190 LE--HEDVASSNILFIECTYIDKERNVTQAREWGHIHLDEII 229
>gi|168701937|ref|ZP_02734214.1| hypothetical protein GobsU_20593 [Gemmata obscuriglobus UQM 2246]
Length = 284
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 124/230 (53%), Gaps = 10/230 (4%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
G TIEG S ++ IPELK FD+G P + F++H HLDH+ LP+YVA R
Sbjct: 19 GLTIEGWSRAAVQSYWRIPELKIGFDLGAQPWDFMGTPNWFVSHTHLDHVAALPVYVARR 78
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
+ + PPT++VP EDV+KL + L L L G+ E+ + VV F
Sbjct: 79 RMMKMDPPTVYVPAEGLEDVKKLMAVMHRLDRGRQLAHLKGLTAGDEIELTREHVVTVFN 138
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
T H IPS+G+V++ R KLK +YI L G +I++LK +G IT + P VA+TGDT
Sbjct: 139 TVHTIPSRGFVVWERRNKLKDEYIGLPGDKIKELKLAGTAITREVRIPIVAYTGDTA--- 195
Query: 260 MLNPRNADA----LRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
P DA AKILITE +F+ + + GH HL + + +A
Sbjct: 196 ---PAGLDACPACFDAKILITEMSFVRAAHRRDKIHKFGHMHLDDFVERA 242
>gi|301122551|ref|XP_002909002.1| nuclear ribonuclease Z, putative [Phytophthora infestans T30-4]
gi|262099764|gb|EEY57816.1| nuclear ribonuclease Z, putative [Phytophthora infestans T30-4]
Length = 283
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 131/232 (56%), Gaps = 5/232 (2%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
K +D GYT+ S+ G E+C + + AFD+G R + ++ VFITHGH+DHIG +
Sbjct: 4 KVVDAGGYTLHLRSVAGIESCCYVDSIDIAFDLGCLVGRVVNKSHVFITHGHIDHIGAVV 63
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL-GNVELNLDLVALDVGETYEMRND 192
+ A R L KP + FVP ++ +E + + + G+ +V L + +
Sbjct: 64 AHAARRALQKQKPASYFVPAHLEPHLESILKSTAVMQGDAPFPAKIVPLQPFDEVHISAK 123
Query: 193 IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFT 252
+VR T H +PS GY++Y + +LK +Y L G +I LK++G EIT L+PE+A+T
Sbjct: 124 YLVRAVPTKHRVPSLGYILYEKKNRLKPEYRQLPGVEIAALKRAGQEITSAELTPEIAYT 183
Query: 253 GDTTSEFM----LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
GDTT E +N D L+ K+LITEAT+ D +M+I+ A GH HL +
Sbjct: 184 GDTTIEVFTTAAVNEGTKDLLQVKVLITEATYADSKMTIQDAVARGHMHLDQ 235
>gi|283777841|ref|YP_003368596.1| hypothetical protein Psta_0039 [Pirellula staleyi DSM 6068]
gi|283436294|gb|ADB14736.1| conserved hypothetical protein [Pirellula staleyi DSM 6068]
Length = 279
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 122/219 (55%), Gaps = 2/219 (0%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL 141
TIEG S ++ IPE+K FD+G P + + F+TH HLDHI LP+YVA R +
Sbjct: 16 TIEGYSRAAVQSYWRIPEMKIGFDLGAQPWDFMGTSTWFVTHTHLDHIAALPVYVARRRM 75
Query: 142 YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTH 201
+ PP I+VP + E++ ++ L L DL + G+ E+ ++VV T
Sbjct: 76 MKMDPPLIYVPEHSRALCEEVLKVFSRLDRGRLPCDLRGVKPGDEIELSRELVVTASATK 135
Query: 202 HVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFML 261
H +PS GYV++ R KLK +Y L G+QI ++ SG+E+T+ P++A+ GD++ E +
Sbjct: 136 HTVPSVGYVVWQRRNKLKDEYQGLSGEQIRDIRLSGMEVTEEKRFPQLAYLGDSSPEGLD 195
Query: 262 NPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
N AKILITE TF+ E +HGH HL +
Sbjct: 196 N--CPAMYEAKILITEMTFVAPGHRKEKIHKHGHMHLDD 232
>gi|440717705|ref|ZP_20898186.1| hypothetical protein RBSWK_05246 [Rhodopirellula baltica SWK14]
gi|436437128|gb|ELP30792.1| hypothetical protein RBSWK_05246 [Rhodopirellula baltica SWK14]
Length = 279
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 130/235 (55%), Gaps = 3/235 (1%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+G TIEG S +TC + ELK FD+G P + +FI+H HLDHI LP YV+
Sbjct: 13 DGLTIEGYSRAAVQTCWRVNELKLLFDVGVQPWDFMGTPTMFISHAHLDHIAALPAYVSR 72
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
R + + PP I++P S + K+ + RSL + +LV L G+ ++ + VV+
Sbjct: 73 RRMMKMDPPVIYLPDSAVDMAWKMLQTFRSLDRGAMPCELVGLLDGDETKIGREYVVKSM 132
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
HH I + G+++Y R KLK +Y+ L G++I LK +G EIT P A+TGDT+ +
Sbjct: 133 NVHHTIDALGFIVYQRRHKLKPEYLDLPGEKIRDLKMAGTEITTEQRVPVFAYTGDTSPK 192
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
+ N N + +KILI+E TF E +HGH H+ +D R+ ++++
Sbjct: 193 GLDN--NPEFYESKILISELTFAAPEHRRSKIHKHGHMHV-DDYRERADNFKNEL 244
>gi|32476124|ref|NP_869118.1| hypothetical protein RB9875 [Rhodopirellula baltica SH 1]
gi|32446668|emb|CAD76504.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length = 280
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 130/235 (55%), Gaps = 3/235 (1%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+G TIEG S +TC + ELK FD+G P + +FI+H HLDHI LP YV+
Sbjct: 14 DGLTIEGYSRAAVQTCWRVNELKLLFDVGVQPWDFMGTPTMFISHAHLDHIAALPAYVSR 73
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
R + + PP I++P S + K+ + RSL + +LV L G+ ++ + VV+
Sbjct: 74 RRMMKMDPPVIYLPDSAVDMAWKMLQTFRSLDRGAMPCELVGLLDGDETKIGREYVVKSM 133
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
HH I + G+++Y R KLK +Y+ L G++I LK +G EIT P A+TGDT+ +
Sbjct: 134 NVHHTIDALGFIVYQRRHKLKPEYLDLPGEKIRDLKMAGTEITTEQRVPVFAYTGDTSPK 193
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
+ N N + +KILI+E TF E +HGH H+ +D R+ ++++
Sbjct: 194 GLDN--NPEFYESKILISELTFAAPEHRRSKIHKHGHMHV-DDYRERADNFKNEL 245
>gi|421097854|ref|ZP_15558533.1| beta-lactamase family protein [Leptospira borgpetersenii str.
200901122]
gi|410799137|gb|EKS01218.1| beta-lactamase family protein [Leptospira borgpetersenii str.
200901122]
Length = 275
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 124/222 (55%), Gaps = 2/222 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH LP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IFVP +++E + ++ +++ + + D+ A + G+ ++ P KT
Sbjct: 70 LRKLKPPKIFVPAALEEPMRRILDLYSEIEDFSYLYDMKAANPGDKIDLDQQHFFSPHKT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ L +++ K E+++ P ++F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQRRKKLKKEFQSLPQEELNLALKQKKEVSEPSEFPVISFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
L + D + IL E T++D E ++ A++ GH HL E I
Sbjct: 190 LE--HEDVASSSILFIECTYIDKERNVTQAREWGHIHLDEII 229
>gi|42523833|ref|NP_969213.1| metallo-beta-lactamase superfamily protein [Bdellovibrio
bacteriovorus HD100]
gi|39576040|emb|CAE80206.1| metallo-beta-lactamase superfamily protein [Bdellovibrio
bacteriovorus HD100]
Length = 280
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 2/222 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y G+S+ G T + +PEL +FD+ + I FI+HGHLDH G+P ++ R
Sbjct: 14 YKFHGMSLSGIRTAISMPELSLSFDVAQGYPFLINLKQFFISHGHLDHAAGIPYIISQRA 73
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
+ +L P ++P ++ E ++K+ ++ + N + + V + + + ++ F T
Sbjct: 74 MNSLPPGKFYMPGTLVEPLDKIMKLWEQIENHQYKYEFVPVKADDEIPLNPQAFIKVFPT 133
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H I S GY ++ + KKLKK+Y+ LK +I L++ G+E+ + P V+FTGDT EF
Sbjct: 134 THRIESYGYTLFEVHKKLKKEYLGLKQDEIVDLRRQGLEVNETTNIPVVSFTGDTQIEF- 192
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
L+ R ++KILI E+T+LDD+ S+EHA+ GHTH+ E I
Sbjct: 193 LDSRPW-VRQSKILIMESTYLDDKKSVEHARTWGHTHIDEII 233
>gi|449133562|ref|ZP_21769112.1| hypothetical protein RE6C_01167 [Rhodopirellula europaea 6C]
gi|448887727|gb|EMB18085.1| hypothetical protein RE6C_01167 [Rhodopirellula europaea 6C]
Length = 279
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 130/235 (55%), Gaps = 3/235 (1%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+G TIEG S +TC + ELK FD+G P + +FI+H HLDHI LP YV+
Sbjct: 13 DGLTIEGYSRAAVQTCWRVNELKLLFDVGVQPWDFMGTPTMFISHAHLDHIAALPAYVSR 72
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
R + + PP I++P S + K+ + RSL + +L+ L G+ ++ + VV+
Sbjct: 73 RRMMKMDPPIIYLPDSAVDMAWKVLQTFRSLDRGAMPCELIGLLDGDETKIGREYVVKSM 132
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
HH I + G+++Y R KLK +Y+ L G++I LK +G EIT P A+TGDT+ +
Sbjct: 133 NVHHTIDALGFIVYQRRHKLKPEYLDLPGEKIRDLKMAGTEITTEQRVPVFAYTGDTSPK 192
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
+ N N + +KILI+E TF E +HGH H+ +D R+ ++++
Sbjct: 193 GLDN--NPEFYESKILISELTFAAPEHRRSKIHKHGHMHV-DDYRERADNFKNEL 244
>gi|421614182|ref|ZP_16055247.1| hypothetical protein RBSH_05058 [Rhodopirellula baltica SH28]
gi|408495048|gb|EKJ99641.1| hypothetical protein RBSH_05058 [Rhodopirellula baltica SH28]
Length = 279
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 125/226 (55%), Gaps = 3/226 (1%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+G TIEG S +TC + ELK FD+G P + +FI+H HLDHI LP YV+
Sbjct: 13 DGLTIEGYSRAAVQTCWRVNELKLLFDVGVQPWDFMGTPTMFISHAHLDHIAALPAYVSR 72
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
R + + PP I++P S + K+ + RSL + +LV L G+ ++ + VV+
Sbjct: 73 RRMMKMDPPVIYLPDSAVDMAWKMLQTFRSLDRGAMPCELVGLLDGDETKIGREYVVKSM 132
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
HH I + G+++Y R KLK +Y+ L G++I LK +G EIT P A+TGDT+ +
Sbjct: 133 NVHHTIDALGFIVYQRRHKLKPEYLDLPGEKIRDLKMAGTEITTEQRVPVFAYTGDTSPK 192
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQ 304
+ N + +KILI+E TF E +HGH H+ +D R+
Sbjct: 193 GL--DSNPEFYESKILISELTFAAPEHRRSKIHKHGHMHV-DDYRE 235
>gi|417304309|ref|ZP_12091337.1| hypothetical protein RBWH47_01231 [Rhodopirellula baltica WH47]
gi|327539420|gb|EGF26036.1| hypothetical protein RBWH47_01231 [Rhodopirellula baltica WH47]
Length = 279
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 129/235 (54%), Gaps = 3/235 (1%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+G TIEG S +TC + ELK FD+G P + +FI+H HLDHI LP YV+
Sbjct: 13 DGLTIEGYSRAAVQTCWRVNELKLLFDVGVQPWDFMGTPTMFISHAHLDHIAALPAYVSR 72
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
R + + PP I++P S + K+ + RSL + +LV L G+ ++ + VV+
Sbjct: 73 RRMMKMDPPVIYLPDSAVDMAWKMLQTFRSLDRGAMPCELVGLLDGDETKIGREYVVKSM 132
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
HH I + G+++Y R KLK +Y+ L G++I LK +G EIT P A+TGDT+ +
Sbjct: 133 NVHHTIDALGFIVYQRRHKLKPEYLDLPGEKIRDLKMAGTEITTEQRVPVFAYTGDTSPK 192
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
+ N + +KILI+E TF E +HGH H+ +D R+ ++++
Sbjct: 193 GL--DSNPEFYESKILISELTFAAPEHRRSKIHKHGHMHV-DDYRERADNFKNEL 244
>gi|325186919|emb|CCA21463.1| nuclear ribonuclease Z putative [Albugo laibachii Nc14]
Length = 295
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 127/234 (54%), Gaps = 6/234 (2%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
Y I S G E+ I E+ D G C A ++ VFITHGH+DHI G+ + A R
Sbjct: 6 NYRIHVRSTAGIESAYYIDEIDIMLDCGVCFDLAYTKSNVFITHGHVDHIQGIVAHAARR 65
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
L +L VP + +V+ + + + + +L+ + + +++ +D +V+ +K
Sbjct: 66 ALMSLPTANYHVPHWLVSEVQNILSSYSKMQEKTIQANLIPVKEKDEFKISHDHIVKAYK 125
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
T H +PS GYV+Y K LK+++++L +I + K G+E+ I + PE+A+TGDTT +
Sbjct: 126 TFHRVPSLGYVVYKRNKALKQEFVNLSFLEIAGISKQGIELNVISIDPEIAYTGDTTMQL 185
Query: 260 M------LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVL 307
+ D LRAK+LITEAT++D IE A+ GH HL + I A L
Sbjct: 186 FHAEGCSYDGTKNDFLRAKVLITEATYIDKAALIEKAEDRGHIHLEQVINDAYL 239
>gi|426404322|ref|YP_007023293.1| metallo-beta-lactamase superfamily protein [Bdellovibrio
bacteriovorus str. Tiberius]
gi|425860990|gb|AFY02026.1| metallo-beta-lactamase superfamily protein [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 280
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 129/222 (58%), Gaps = 2/222 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y G+S+ G T + +PEL +FD+ + I FI+HGHLDH G+P ++ +
Sbjct: 14 YKFHGLSLSGIRTAISMPELSLSFDVAQGYPFLINLKQFFISHGHLDHAAGIPYIISQKA 73
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
+ ++ P ++P ++ E ++K+ ++ + N + + + + + + ++ F T
Sbjct: 74 MNSMPPGKFYMPGTLVEPLDKIMKLWEQIENHQYKYEFIPVKADDEIPLNPQAFIKVFPT 133
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H I S GY ++ + KKLKK+Y+ LK +I L++ G+E+ + P V+FTGDT EF
Sbjct: 134 THRIESYGYTLFEVHKKLKKEYLGLKQDEIVDLRRQGLEVNETTNIPVVSFTGDTQIEF- 192
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
L+ R ++K+LI E+T+LDD+ S+EHA+ GHTH+ E I
Sbjct: 193 LDSRPW-VRQSKVLIMESTYLDDKKSVEHARTWGHTHIDEII 233
>gi|291333995|gb|ADD93671.1| hypothetical protein DSM3645_01615 [uncultured marine bacterium
MedDCM-OCT-S04-C7]
Length = 279
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 124/235 (52%), Gaps = 3/235 (1%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+G T+EG S ++ IPELK FD+G P + + F++H HLDHI LP+YVA
Sbjct: 13 KGLTVEGYSRAAVQSYWRIPELKLGFDLGGQPWGFMATSTWFLSHTHLDHIAALPVYVAR 72
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
R + + PPTI+VP +E+L L L L+ GE E+ + VV
Sbjct: 73 RRMMKMDPPTIYVPEKAVVKIERLLRAVSDLDKGRLPCTLLPAHPGEEIELSREHVVTVS 132
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
T H +PS GYV++ R+KLK +Y L G QI L+ SG+++TD + +P V + GD+ +
Sbjct: 133 STCHTLPSVGYVVWERRRKLKNEYQELSGNQIRDLRLSGIDVTDEVRTPLVGYLGDSNPD 192
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
+ R A ILI E TF+ E+ ++GH HL ED + Q+ V
Sbjct: 193 GL--DRCPAMYEAMILIAEMTFVAKSHRRENIHKYGHMHL-EDFLARRERFQNDV 244
>gi|149177337|ref|ZP_01855942.1| hypothetical protein PM8797T_23991 [Planctomyces maris DSM 8797]
gi|148843862|gb|EDL58220.1| hypothetical protein PM8797T_23991 [Planctomyces maris DSM 8797]
Length = 279
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 129/244 (52%), Gaps = 11/244 (4%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
+ + +G+TIEG S ++ IPELK FD+G P + FITH HLDH+ LP
Sbjct: 8 QSVKYKGFTIEGYSRAAVQSYWRIPELKLGFDLGGSPWSFMGTAVFFITHAHLDHMAALP 67
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
+VA R + + PPTI++P + + V K+ + + L + +L+ L GE ++ +
Sbjct: 68 AFVARRRMMKMSPPTIYLPEEVVDPVWKMLKSWQKLDRGRMECELIGLKDGEEIQLSREH 127
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
V F+T H +PS G+ ++ RKKLK ++ I + SG+E+++ I P V +TG
Sbjct: 128 AVTAFQTKHTVPSLGFQVWDCRKKLKPEFQGKPETDIRDARISGIEVSEEIRVPLVCYTG 187
Query: 254 DTTSEFMLNPRNAD----ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKL 309
DT P D A +K+LITE TF E E + GH HL +DI + +
Sbjct: 188 DTA------PAGLDHFETAYESKVLITEMTFYRPEHRREKIHKFGHMHL-DDIVERAERF 240
Query: 310 QSKV 313
Q+++
Sbjct: 241 QNEL 244
>gi|383768034|ref|YP_005447017.1| putative ribonuclease Z [Phycisphaera mikurensis NBRC 102666]
gi|381388304|dbj|BAM05120.1| putative ribonuclease Z [Phycisphaera mikurensis NBRC 102666]
Length = 313
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 116/203 (57%), Gaps = 4/203 (1%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
+ ++G+SI G E+ V +PEL FDIG CP + FV +THGH+DH+ G+ Y + R
Sbjct: 31 FRVQGLSIAGEESVVAVPELDVCFDIGSCPKAVLPSPFVALTHGHMDHVAGIAYYFSQRP 90
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
+ T+ PPS+++ ++ L + + + + L L GE E++N+ +RPF+T
Sbjct: 91 FQGMSAGTVVCPPSLRDGLDGLMKAWQKIERQKTPYTLTPLADGEMLEIKNNHFLRPFRT 150
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT-TSEF 259
H +PS GY + R KLK + + + ++I + K +G I D P V++TGDT +
Sbjct: 151 VHTVPSSGYSVLEKRTKLKPKLVGMPQEEIVRRKNAGEAIVDTRFVPLVSYTGDTGWGDH 210
Query: 260 MLNPRNADALRAKILITEATFLD 282
+L P + L ++LITE TF++
Sbjct: 211 LLIP---EVLECRVLITECTFME 230
>gi|398342621|ref|ZP_10527324.1| metallo-beta-lactamase [Leptospira inadai serovar Lyme str. 10]
Length = 276
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 121/220 (55%), Gaps = 2/220 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y+ EG+S GG T +I+ L FDIG I + +TH HLDH G+P YV+ R
Sbjct: 10 YSYEGISEGGIRTSIIMSNLNLMFDIGHQNPNKIHIGKLLLTHAHLDHSAGIPYYVSQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L L PP I+VP ++ + ++ ++ + + +L + GE E+ +P++T
Sbjct: 70 LRKLTPPKIYVPKELEIPLHEILALYSKIEDFPYRYELFGVAEGEEVEIDPYHTFKPWRT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H + SQGY +Y +KKLK ++ L ++ + KK I +II P V+F+GDT E++
Sbjct: 130 FHRVVSQGYTVYERKKKLKTEFQGLSAAELAERKKVSGPIDEIISKPVVSFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
L + D ++++ E T++D+E + A++ GH HL E
Sbjct: 190 LT--HKDVAESEVVFLECTYIDEERDVSKAREWGHIHLDE 227
>gi|87307110|ref|ZP_01089256.1| hypothetical protein DSM3645_01615 [Blastopirellula marina DSM
3645]
gi|87290483|gb|EAQ82371.1| hypothetical protein DSM3645_01615 [Blastopirellula marina DSM
3645]
Length = 279
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 132/243 (54%), Gaps = 11/243 (4%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
+ +++ TIEG S ++ IPE+K FD+G P + F+TH HLDH+ LP
Sbjct: 8 RKLEVNDLTIEGYSRAAVQSYWRIPEMKVLFDLGLQPWDFMGTPTSFVTHAHLDHVAALP 67
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
+YV+ R + + PPTI++P + V+++ + L + +L+ + G+ E+ ++
Sbjct: 68 VYVSRRRMMKMDPPTIYLPETAIGPVQQMLSAFQRLDRGGMPCELIGVKPGDEIELSREL 127
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
+V T H IPS GY+++ R+KLK +Y +L G QI ++ SGV++TD P++A+ G
Sbjct: 128 LVTVVPTKHTIPSVGYIVWQRRRKLKPEYQNLPGDQIRDIRLSGVDVTDEHRFPKLAYLG 187
Query: 254 DTTSEFMLNPRNADAL----RAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKL 309
D+ E M DA A+ LI E TFL + E + GH HL +D+ +
Sbjct: 188 DSRPEAM------DACPAFYEAETLIMEMTFLAPDHRREKIHKMGHIHL-DDVVDRRDRF 240
Query: 310 QSK 312
Q+K
Sbjct: 241 QNK 243
>gi|418741772|ref|ZP_13298146.1| beta-lactamase family protein [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421090109|ref|ZP_15550910.1| beta-lactamase family protein [Leptospira kirschneri str.
200802841]
gi|410001372|gb|EKO51986.1| beta-lactamase family protein [Leptospira kirschneri str.
200802841]
gi|410751220|gb|EKR08199.1| beta-lactamase family protein [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 227
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 110/180 (61%), Gaps = 2/180 (1%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVA 180
+TH HLDH GLP Y++ R L LKPP IFVP +++ + K+ +++ + N +L A
Sbjct: 2 LTHSHLDHSSGLPYYISQRSLRKLKPPRIFVPAPLEKPMRKILDLYSEIENFTYAYELSA 61
Query: 181 LDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEI 240
+ G+ ++ ++ P +T H +PSQGY +Y RKKLKK++ + ++ + K +E+
Sbjct: 62 VSPGDKIDLDSNHFFSPHQTFHRVPSQGYTLYQKRKKLKKEFQSISQNELNQALKEKIEV 121
Query: 241 TDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
+++ P ++F+GDT E++L + D + IL E T++DDE ++ A++ GHTHL E
Sbjct: 122 SELSEIPVISFSGDTKIEYVLE--HEDVANSSILFIECTYIDDERNVAQAREWGHTHLDE 179
>gi|262195938|ref|YP_003267147.1| ribonuclease Z family protein [Haliangium ochraceum DSM 14365]
gi|262079285|gb|ACY15254.1| ribonuclease Z family protein [Haliangium ochraceum DSM 14365]
Length = 290
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 3/227 (1%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
GY+I GVS+GG T +++ EL FD+G + +F++H H+DH+GGL ++ R
Sbjct: 16 GYSIRGVSVGGVYTSMMVSELGAMFDVGMALRSFSGADRLFLSHAHMDHLGGLLAFLGMR 75
Query: 140 GLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
G Y + +P +F+P +I E V+ L L L + V ++ G+ E+R D+ VR
Sbjct: 76 GAYGVERPLEVFLPAAIAEPVQALLRAAEPLQRFPLKIATVPMEPGQVVELRRDLSVRAL 135
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
+T H +PS GY + KL+ ++ L G +I + +++G ++ E+A+ DT
Sbjct: 136 RTFHPVPSLGYQFFRRVSKLRDEFRDLPGAEIGRRRRAGEDLFREETHLELAYVTDTLVR 195
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
+ LR+K+LI E TFLD S+ ++ H HL E + +A
Sbjct: 196 VLDT--EPSLLRSKVLILECTFLDQRKSLADSRAGCHIHLDELLERA 240
>gi|374585646|ref|ZP_09658738.1| metallo-beta-lactamase [Leptonema illini DSM 21528]
gi|373874507|gb|EHQ06501.1| metallo-beta-lactamase [Leptonema illini DSM 21528]
Length = 283
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 117/221 (52%), Gaps = 2/221 (0%)
Query: 85 GVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNL 144
G S GG TC+ +P+ + FD G R + + ++HGHLDH GL ++ R L L
Sbjct: 15 GNSEGGTHTCIALPQYRLLFDTGVGSARLTEYPLILLSHGHLDHASGLAYLISQRSLRKL 74
Query: 145 KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVI 204
PP I+VPP + E + ++ ++ + + L A+D Y ++ + R ++ H +
Sbjct: 75 APPEIYVPPEVYEPLTQIMKLWGDIEDYHSQFHLHAVDYDRHYPLKGNQFFRAIRSSHRV 134
Query: 205 PSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPR 264
PS GY I KLK ++++L GK+I + K +G + + P + F+GDTT EF+
Sbjct: 135 PSNGYSIVEKVLKLKPEHLNLPGKEIARRKATGENLFNETYQPIITFSGDTTIEFVTE-- 192
Query: 265 NADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
N +++IL E T++ ++ A++ GH HL E + A
Sbjct: 193 NEIVQKSRILFLECTYICEKRQTARAREWGHIHLDEIVANA 233
>gi|444918946|ref|ZP_21239000.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Cystobacter fuscus DSM 2262]
gi|444709229|gb|ELW50252.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Cystobacter fuscus DSM 2262]
Length = 283
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 121/222 (54%), Gaps = 5/222 (2%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ-QNFVFITHGHLDHIGGLPMYVASR 139
YTI G+S+GG T + +PEL D G P R+ + +F++HGH DH L + R
Sbjct: 10 YTIRGISVGGVYTSLQVPELGVVLDAG-VPIRSFAGTDRIFLSHGHSDHASALGSLLGIR 68
Query: 140 GLYNLK-PPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
GL PP +F+P I+ + + + L LN++ V + G+T+ + + + VR F
Sbjct: 69 GLIGKDTPPRVFLPAEIEAPLRETLAVQGRLLRASLNVETVPMLPGDTHSLGHGLWVRAF 128
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
+THH +PS GY + KLK ++ HL ++I + +K+G ++ D + E+A+ DT S
Sbjct: 129 RTHHPVPSLGYQFFRRVSKLKPEHQHLLPEEIARGRKAGADLFDEVERLELAYATDTLSR 188
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
+ + + +++LI E TFLD + ++ AQ+ H H E
Sbjct: 189 VLET--SPELFDSRVLILECTFLDGKRTVTDAQERSHLHFEE 228
>gi|383456700|ref|YP_005370689.1| ribonuclease Z family protein [Corallococcus coralloides DSM 2259]
gi|380734183|gb|AFE10185.1| ribonuclease Z family protein [Corallococcus coralloides DSM 2259]
Length = 282
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 118/221 (53%), Gaps = 4/221 (1%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQ-NFVFITHGHLDHIGGLPMYVASR 139
YT+ GVS+GG T +++PEL D G P R+ + +F++HGH DH L + R
Sbjct: 10 YTVRGVSVGGVYTSLLVPELGVLLDAG-IPIRSFATTDRIFLSHGHADHASALGSLLGIR 68
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
L PP +++P I+ V++ L ++ ++ V + G+T +++ D+ VR F+
Sbjct: 69 ALVGKGPPFVYLPAEIEAPVQEALAALGRLHRMKSDIRTVPMRPGDTVKVQQDLWVRAFR 128
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
THH +PS GY KLK ++ L +I + +++G + D + E+A+ DT S
Sbjct: 129 THHPVPSLGYQFLRRVAKLKPEFRELPPAKIGRRRQAGEPLFDEVERLELAYCTDTLSNV 188
Query: 260 MLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
+ R +++LI E TF+D E ++ AQ+ H HL E
Sbjct: 189 L--ERQPSLFDSRVLILECTFIDAERTVRDAQERAHIHLEE 227
>gi|261416710|ref|YP_003250393.1| hypothetical protein Fisuc_2325 [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373166|gb|ACX75911.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 295
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 137/250 (54%), Gaps = 19/250 (7%)
Query: 83 IEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY 142
I G SI G T + IPEL D+G CP AI N VF+TH H DH L + + R +
Sbjct: 23 ISGFSISGLATYIQIPELDFCIDMGECPLSAIPLNHVFLTHAHGDHARCLMRHHSLRKMM 82
Query: 143 NLKPPTIF-VPPSIKEDV------EKLFEIHRSLGNVELNL-DLVALDVGET--YEMRND 192
++ +++ +P + E+ E LFE +G + ++ + GE R D
Sbjct: 83 GVERDSVYYMPECVSENAKAWIKAEALFE---GVGEAKFRYPEIEPVTAGELQFLRYRKD 139
Query: 193 IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFT 252
+ + F+ H IP+ G +Y +KKLK +++ +I +L+K+GVEIT + P V+F
Sbjct: 140 LALEAFEVKHSIPAMGGTLYFYKKKLKDEFLGKTPAEIIELRKNGVEITREVYDPLVSFM 199
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDD-EMSIEHAQQHGHTHLSEDIRQAVLKLQS 311
GD E +L+ N+ ++K+LITE TFLDD E ++ +++ GH+HL +DI A+ +L
Sbjct: 200 GDCLGESLLD--NSRVFQSKVLITECTFLDDGEEAM--SKKKGHSHL-KDIVHALNELDD 254
Query: 312 KVSAKVVPLT 321
++ + + L+
Sbjct: 255 EIKCEKIILS 264
>gi|385791550|ref|YP_005822673.1| hypothetical protein FSU_2875 [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302326957|gb|ADL26158.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 308
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 137/250 (54%), Gaps = 19/250 (7%)
Query: 83 IEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY 142
I G SI G T + IPEL D+G CP AI N VF+TH H DH L + + R +
Sbjct: 36 ISGFSISGLATYIQIPELDFCIDMGECPLSAIPLNHVFLTHAHGDHARCLMRHHSLRKMM 95
Query: 143 NLKPPTIF-VPPSIKEDV------EKLFEIHRSLGNVELNL-DLVALDVGET--YEMRND 192
++ +++ +P + E+ E LFE +G + ++ + GE R D
Sbjct: 96 GVERDSVYYMPECVSENAKAWIKAEALFE---GVGEAKFRYPEIEPVTAGELQFLRYRKD 152
Query: 193 IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFT 252
+ + F+ H IP+ G +Y +KKLK +++ +I +L+K+GVEIT + P V+F
Sbjct: 153 LALEAFEVKHSIPAMGGTLYFYKKKLKDEFLGKTPAEIIELRKNGVEITREVYDPLVSFM 212
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDD-EMSIEHAQQHGHTHLSEDIRQAVLKLQS 311
GD E +L+ N+ ++K+LITE TFLDD E ++ +++ GH+HL +DI A+ +L
Sbjct: 213 GDCLGESLLD--NSRVFQSKVLITECTFLDDGEEAM--SKKKGHSHL-KDIVHALNELDD 267
Query: 312 KVSAKVVPLT 321
++ + + L+
Sbjct: 268 EIKCEKIILS 277
>gi|413921296|gb|AFW61228.1| hypothetical protein ZEAMMB73_071826 [Zea mays]
Length = 306
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 95/164 (57%), Gaps = 45/164 (27%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
I+++GY ++GVSIGG ETCVI P L AFDIGRCP
Sbjct: 35 IEIKGYPVDGVSIGGQETCVIFPTLSLAFDIGRCP------------------------- 69
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
L+PPTIFVP +++ VE+LFE+H ++ +LN +LV L+V E YE+R D+
Sbjct: 70 -------QLRPPTIFVPACLRDLVERLFEVHHAMDQSDLNHNLVPLEVREEYELRRDL-- 120
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVE 239
+GYVIY +++KLK+++I L G +I++LK SGVE
Sbjct: 121 -----------KGYVIYSVKQKLKQEFIGLPGSEIKRLKLSGVE 153
>gi|149918433|ref|ZP_01906923.1| Metallo-beta-lactamase [Plesiocystis pacifica SIR-1]
gi|149820733|gb|EDM80143.1| Metallo-beta-lactamase [Plesiocystis pacifica SIR-1]
Length = 279
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 117/229 (51%), Gaps = 4/229 (1%)
Query: 78 LEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVA 137
+ G + GV+ GG ET + +PEL FDIG CP +A+ + + I+HGH DH+GG+ Y++
Sbjct: 11 VSGLRLVGVTEGGVETNLRVPELGVMFDIGMCPPKALGFDRLLISHGHADHLGGIHYYLS 70
Query: 138 SRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRP 197
RG+ K PTI P ++ +E++ E+ ++ + DL G+ E+ +
Sbjct: 71 QRGMRKQKVPTIAAPKALAPQLEQMLELWSAVEGFDYRYDLRPAGPGDRVELGRGLTAIA 130
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTT- 256
T H +PS +VI KL + ++I K+ G IT+ P + +GDTT
Sbjct: 131 VPTVHRVPSLAWVIERRVNKLLPAFQGKPNQEIRAAKERGETITESTDVPLLCVSGDTTI 190
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
F+ +P + K+L+ E T D +E + +GHTH+ E I A
Sbjct: 191 DAFLASPL---MRQVKVLVHECTSWSDTRGVEDTRAYGHTHVDEIIEHA 236
>gi|414885981|tpg|DAA61995.1| TPA: hypothetical protein ZEAMMB73_377552 [Zea mays]
Length = 166
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 67/84 (79%)
Query: 46 KSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFD 105
K AG LS + RA+ +EEEYR+ARA V RKG+++EGY IEG+S+GGHETC+ +P L AFD
Sbjct: 49 KGAGLLSVLDRAMADEEEYRRARAQVQRKGVEVEGYAIEGISVGGHETCITVPSLNVAFD 108
Query: 106 IGRCPTRAIQQNFVFITHGHLDHI 129
IGR P A+ Q+++FITH HLDHI
Sbjct: 109 IGRGPQFAVSQDYLFITHAHLDHI 132
>gi|338534590|ref|YP_004667924.1| ribonuclease Z family protein [Myxococcus fulvus HW-1]
gi|337260686|gb|AEI66846.1| ribonuclease Z family protein [Myxococcus fulvus HW-1]
Length = 282
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 4/226 (1%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAI-QQNFVFITHGHLDHIGGLPMYVASR 139
YT+ GVS+GG T + +PEL D+G P R+ + +F++H H DH GL + R
Sbjct: 10 YTVRGVSVGGVYTSLQVPELDVVLDVG-LPIRSFCGSDRIFLSHAHPDHASGLGSLLGIR 68
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
L P +F+P I+ +V+ + L + + + V + G+ + + + VR F+
Sbjct: 69 RLIGKGAPQVFLPAEIESNVQASLAVMSRLHHTAMEVHTVPMLPGDVRPLGHGLFVRAFR 128
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
THH +PS GY + KL+ ++ L ++I K +++G ++ D + E+A+ DT S
Sbjct: 129 THHPVPSLGYQFFRRISKLRPEFQSLPPQEIAKRRQAGEDLFDEVERLELAYATDTVSRV 188
Query: 260 MLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
+ +++LI E TF+D ++E AQ H HL E I +A
Sbjct: 189 LET--EPSLFESRVLILECTFIDARHTVEDAQARAHLHLDELIARA 232
>gi|443700634|gb|ELT99514.1| hypothetical protein CAPTEDRAFT_108450, partial [Capitella teleta]
Length = 242
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 109/191 (57%), Gaps = 7/191 (3%)
Query: 118 FVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL-----GNV 172
+ +HGH DHI G+ + A R LYN++P + ++P +++ ++ + E L G
Sbjct: 1 LLICSHGHTDHIAGIASHAAKRSLYNMRPASYYIPAHLEKPLDLIAETFSQLNESQEGRG 60
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEK 232
+N V E ++ N V+ F T H + SQGY++Y K K +Y +LK +++ +
Sbjct: 61 RIN-TCVVTPTSEPIQLPNGYKVKVFPTQHRVASQGYIVYRSEKLRKPEYANLKNEEMRE 119
Query: 233 LKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMS-IEHAQ 291
L +SG++ + + +P +A+TGDT E P D LR ++LITEAT++DD S I A+
Sbjct: 120 LIQSGIDFSYLKETPLLAYTGDTLPEIYDEPFTPDLLRVRLLITEATYIDDNPSAIPKAR 179
Query: 292 QHGHTHLSEDI 302
+ GHTHL E I
Sbjct: 180 EWGHTHLQEII 190
>gi|406878875|gb|EKD27670.1| Metallo-beta-lactamase [uncultured bacterium]
Length = 241
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 30/228 (13%)
Query: 78 LEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVA 137
L IEG+SI G ET + +P+L FDIG+CP +A+ + ITHGH+DHIGG+ Y+
Sbjct: 3 LNQIKIEGISIAGEETNIRMPKLGIMFDIGKCPEKAVSIPNLLITHGHVDHIGGIAHYLF 62
Query: 138 SRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRP 197
+R + + PP I+ PPS+ ++++ I + + + ++++ E + + + ++
Sbjct: 63 ARTIKKMTPPHIYAPPSLIPPIKQIVRIFADIHKSDYPANYHSMELNEFHNINKKLFIKV 122
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTS 257
H IP+ Y++Y +K +P ++FTGDTT
Sbjct: 123 IPASHTIPTYCYLLYKTKKD----------------------------NPFLSFTGDTTI 154
Query: 258 EFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
E + N N ++ IL+ E TF D+ IE A + H H+ + + +A
Sbjct: 155 EILEN--NPLLYKSGILMIECTFFGDKKQIEKADAYHHIHIDQILERA 200
>gi|356498042|ref|XP_003517863.1| PREDICTED: LOW QUALITY PROTEIN: nuclear ribonuclease Z-like,
partial [Glycine max]
Length = 205
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 106/192 (55%), Gaps = 43/192 (22%)
Query: 130 GGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM 189
GGLPMYVA GLY ++PPT VP +KEDVEKLFEIHR + +EL +L+ LDVG + +
Sbjct: 2 GGLPMYVAMLGLYRMEPPTNIVPILVKEDVEKLFEIHRKMYQLELKHNLIGLDVGXEFHL 61
Query: 190 RNDIVVRPFKTHHVIPSQ--------GYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEIT 241
D+ V+ F+T HVIP+ GY++Y ++KLK++YI L G +I+ LK G+E
Sbjct: 62 IKDLKVKAFRTCHVIPTXPGSQPTQCGYILYSEKQKLKQEYIGLSGNEIKNLKSFGME-- 119
Query: 242 DIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHG-HTHLSE 300
RA + L++ +++EHA+ +G H +LS
Sbjct: 120 ----------------------------RA----SHINLLNNSITVEHARDYGIHVNLSG 147
Query: 301 DIRQAVLKLQSK 312
I V +LQ++
Sbjct: 148 FINLYVERLQNR 159
>gi|108757572|ref|YP_631594.1| ribonuclease Z family protein [Myxococcus xanthus DK 1622]
gi|108461452|gb|ABF86637.1| ribonuclease Z family protein [Myxococcus xanthus DK 1622]
Length = 306
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 6/227 (2%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAI-QQNFVFITHGHLDHIGGLPMYVASR 139
YT+ GVS+GG T + +PEL D+G P R+ + +F++H H DH GL + R
Sbjct: 34 YTVRGVSVGGVYTSLQVPELDVVLDVG-LPIRSFCGSDRIFLSHAHPDHASGLGSLLGIR 92
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
L P +F+P I+E+V+ + L + + + V + G+ + + VR F+
Sbjct: 93 RLIGKGAPQVFLPAEIEENVQASLAVMSRLHHTSMEVHTVPMLPGDVRPLGQGLFVRAFR 152
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
THH +PS GY + KL+ ++ L ++I + +++G + D + E+A+ DT S
Sbjct: 153 THHPVPSLGYQFFRRVAKLRLEHQSLPPQEIARRRQAGEALFDEVERLELAYATDTLSRV 212
Query: 260 M-LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
+ P D +++LI E TF+D S++ AQ H H+ E + +A
Sbjct: 213 LDTEPGLFD---SRVLILECTFVDARHSVQDAQAKAHLHVDELLARA 256
>gi|413945463|gb|AFW78112.1| hypothetical protein ZEAMMB73_839838 [Zea mays]
Length = 285
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 79/105 (75%), Gaps = 1/105 (0%)
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHR-SLGNVELNLDLVALDVGETYEMRNDIV 194
RGL+ L+ PTIFVP + + VE+LFE+HR ++ ELN +LV L+V E YE+R D+
Sbjct: 28 CGQRGLFRLRSPTIFVPACLWDLVERLFEVHRRAMDQSELNHNLVPLEVREEYELRRDLK 87
Query: 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVE 239
VR F+T+H IPSQGYVIY +++KLK+++I L G +I++LK SGVE
Sbjct: 88 VRAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKRLKLSGVE 132
>gi|358331856|dbj|GAA50605.1| ribonuclease Z chloroplastic [Clonorchis sinensis]
Length = 261
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 114/230 (49%), Gaps = 35/230 (15%)
Query: 81 YTIEGVSIGGHETCVII--PELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
Y + SI G+ETCV + E++ AFDIG P I + VF++HGH DH+G + ++
Sbjct: 9 YEVFSWSIAGNETCVGVRSGEMRFAFDIGFAPNPMISCDHVFVSHGHADHVGAIAQHMKK 68
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV-----ELNLDLVALDVGETYEMRNDI 193
R L +L + ++PP + E V + + + ++ + E + LV L G ++ +
Sbjct: 69 RHLNHLPKASYYLPPWLIEHVRGICKAYAAMSELASEGTEFDCPLVPLSPGNRMQLPENW 128
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
+V +THH + SQGY+ + K + G E PE+A+ G
Sbjct: 129 IVEAIETHHSVKSQGYI-------------------LSKRDRDGQEY------PEIAYLG 163
Query: 254 DTTSEFMLNPRNA--DALRAKILITEATFLDD-EMSIEHAQQHGHTHLSE 300
D+ + R + L ++LI EATFLD E +E A HGHTHL+E
Sbjct: 164 DSRFSVLTEARTSCPALLSVRLLIMEATFLDRPERMLERAVSHGHTHLTE 213
>gi|115377210|ref|ZP_01464422.1| nuclear ribonuclease Z, putative [Stigmatella aurantiaca DW4/3-1]
gi|310821192|ref|YP_003953550.1| hypothetical protein STAUR_3935 [Stigmatella aurantiaca DW4/3-1]
gi|115365793|gb|EAU64816.1| nuclear ribonuclease Z, putative [Stigmatella aurantiaca DW4/3-1]
gi|309394264|gb|ADO71723.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 283
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 116/227 (51%), Gaps = 5/227 (2%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ-QNFVFITHGHLDHIGGLPMYVASR 139
YT+ G+S+GG T + IPEL D G P R+ + +F++HGH DH L + R
Sbjct: 10 YTVRGISLGGVYTSLQIPELGVVLDAG-VPIRSFAGTDRLFLSHGHPDHSSALGSLLGIR 68
Query: 140 GLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
GL P +F+P I+ V++ L + + GE + + + VR F
Sbjct: 69 GLVGKAAPLQVFLPAEIEAAVQEALAAAGRLHRSSTTIQAFPMLPGEERHLSHGLWVRAF 128
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
+THH PS GY KLK ++ + G++I +L+K G ++ + E+A+ DT S+
Sbjct: 129 RTHHAGPSLGYQFLRRVTKLKPEHQAMPGEEIARLRKQGADLFETTERLELAYATDTLSD 188
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
+ + L +++LI E T+LD + E A++ HTHL E I +A
Sbjct: 189 VLET--APEVLHSRVLILECTYLDAKHPAEAARERLHTHLDEIIARA 233
>gi|405351348|ref|ZP_11022831.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Chondromyces apiculatus DSM 436]
gi|397093239|gb|EJJ23962.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Myxococcus sp. (contaminant ex DSM 436)]
Length = 266
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 115/220 (52%), Gaps = 6/220 (2%)
Query: 88 IGGHETCVIIPELKCAFDIGRCPTRAI-QQNFVFITHGHLDHIGGLPMYVASRGLYNLKP 146
+GG T + +PEL D+G P R+ + +F++H H DH GL + R L
Sbjct: 1 MGGVYTSLQVPELDVVLDVG-LPIRSFCGTDRIFLSHAHPDHASGLGSLLGVRRLIGKGA 59
Query: 147 PTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPS 206
P +F+P I+ +V++ + L + +++ V + G+ + + + VR F+THH +PS
Sbjct: 60 PQVFLPAEIEANVQEALAVLSRLHHTAMDVRTVPMHPGDVQPLGHGLFVRAFRTHHPVPS 119
Query: 207 QGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM-LNPRN 265
GY + KL+ ++ L + I + +++G ++ D + E+A+ DT S + P
Sbjct: 120 LGYQFFRRITKLRPEHQGLPPQDIARRRQAGEDLFDTVERLELAYATDTVSRVLETEPSL 179
Query: 266 ADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
D ++ILI E TF+D ++E AQ H HL E I +A
Sbjct: 180 FD---SRILILECTFIDARHTVEDAQARAHLHLDELIARA 216
>gi|442321491|ref|YP_007361512.1| ribonuclease Z family protein [Myxococcus stipitatus DSM 14675]
gi|441489133|gb|AGC45828.1| ribonuclease Z family protein [Myxococcus stipitatus DSM 14675]
Length = 283
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 6/227 (2%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ-QNFVFITHGHLDHIGGLPMYVASR 139
YT+ G+S+GG T + +PEL D+G P R+ +F++H H DH L + R
Sbjct: 11 YTVRGISVGGVYTSLQVPELDVVLDVG-VPIRSFAGTERIFLSHAHPDHASALGALLGIR 69
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
L P +F+P I+ V + E+ L + + V + G+ + + VR F+
Sbjct: 70 RLLGKGAPQLFLPAEIEPTVREALEVLSRLHHTPMEARTVPMLPGDVQPLGQGLHVRAFR 129
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
THH +PS GY KL+ +++ + ++I + +K+G ++ + E+A+ DT +
Sbjct: 130 THHPVPSLGYQFLRRVTKLRPEHLGMPPQEIAQRRKAGEDLFTEVDHLELAYATDTLARV 189
Query: 260 M-LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
+ P D +++L+ E TF+D + S++ A+ H HL E I A
Sbjct: 190 LETEPMLFD---SRVLVIECTFVDPKRSVQDARDRAHLHLDELIAHA 233
>gi|456970671|gb|EMG11422.1| hypothetical protein LEP1GSC151_5331 [Leptospira interrogans
serovar Grippotyphosa str. LT2186]
Length = 146
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH GLP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLLLTHSHLDHSCGLPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LK P IFVP +KE ++K+ +++ + N +L A+ G+ ++ ++ P +T
Sbjct: 70 LRKLKSPKIFVPAPLKEPMQKILDLYSEIENFTYAYELNAVSPGDKIDLDSNHFFSPHQT 129
Query: 201 HHVIPSQGYVIYLLRKK 217
H +PSQGY +Y RK
Sbjct: 130 FHRVPSQGYTLYQKRKN 146
>gi|29841375|gb|AAP06407.1| similar to GenBank Accession Number CAD22100 RNase Z in Arabidopsis
thaliana [Schistosoma japonicum]
Length = 268
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 116/239 (48%), Gaps = 34/239 (14%)
Query: 81 YTIEGVSIGGHETCVIIPELK--CAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+ I G S+ G+ETCV + + FDIG P + +++FI+HGH DHIG + ++
Sbjct: 9 FEIFGWSVAGNETCVAVRKNGKVFGFDIGFSPRPLVLADYIFISHGHADHIGAITQHMKK 68
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLG---NVELNLDLVALDVGETYEMRNDIVV 195
R L L+ T F+P + V+ + + ++ + + + ++ G +E+ + V
Sbjct: 69 RALNGLRGATYFMPKHLVPHVKAVCDSFTAMAEKHDSDFVGTFIPVEPGNRFELSDGWRV 128
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
F T+H I S GY++Y +G E+ PE+A+ GD+
Sbjct: 129 VSFSTYHSIISVGYLLYY-------------------RDPNGTEV------PEIAYLGDS 163
Query: 256 TSEFM--LNPRNADALRAKILITEATFLDD-EMSIEHAQQHGHTHLSEDIRQAVLKLQS 311
+ N D L ++LI EATFLD+ + IE A+ GHTHL E IRQ L+S
Sbjct: 164 RFTVIHEANSICPDLLSTQLLIMEATFLDNPDRRIESARNRGHTHLDE-IRQNASLLKS 221
>gi|414590636|tpg|DAA41207.1| TPA: putative dnaJ chaperone family protein [Zea mays]
Length = 581
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 76/133 (57%), Gaps = 27/133 (20%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
I++EGY ++GVSIGG +P + R P H HI G
Sbjct: 35 IEIEGYPVDGVSIGG------VP-----LRLSRAPR----------PHRGPSHICG---- 69
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
RGL+ L PPTIFVP +++ VE+LFE+HR++ ELN +LV L+V E YE+R D+ V
Sbjct: 70 --QRGLFRLCPPTIFVPACLRDLVERLFEVHRAMDQSELNHNLVPLEVREEYELRRDLKV 127
Query: 196 RPFKTHHVIPSQG 208
R FKT+H IPSQ
Sbjct: 128 RAFKTYHAIPSQA 140
>gi|299469717|emb|CBN76571.1| metallo-beta-lactamase superfamily protein [Ectocarpus siliculosus]
Length = 604
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 3/193 (1%)
Query: 104 FDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLF 163
FD+G CP+ + VF++HGHLDH G + + R L P ++ + +EK+
Sbjct: 309 FDMGVCPSEVLHVAHVFVSHGHLDHCGAIVSHARLRALSQGPPAKYYMGAELASGMEKVR 368
Query: 164 EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR-KKLKKQY 222
+ + + +D+VA+ + ++ VRPF H + + G+ + L+ LK +Y
Sbjct: 369 KAFEEVEGASIAMDIVAVGPEDRVDLGQGCFVRPFLVKHRVDALGFALMRLKTDGLKHEY 428
Query: 223 IHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLD 282
L G++I L+K GV++ + EV +TGDT + +++ A++LI E T+LD
Sbjct: 429 RQLDGREIGALRKRGVDVQSSHETVEVVYTGDTVMDGLVS--QPLVWEARMLIMEVTYLD 486
Query: 283 DEMSIEHAQQHGH 295
+ S H H
Sbjct: 487 GDGSAAAKNFHVH 499
>gi|440791866|gb|ELR13104.1| hypothetical protein ACA1_098010 [Acanthamoeba castellanii str.
Neff]
Length = 331
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 24/234 (10%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
G+T+ G S +T IPEL+ D G C R Q +VF+TH H DH +
Sbjct: 46 GHTLTGYSRSADKTFFHIPELQVGLDAGMC--RGRQPKYVFLTHTHTDHSVDVAYMSKKE 103
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSL--------GNVELNLDLVALDVGETYEMRN 191
G+ T+F P + VE+ + L G+ + L + G+TY ++N
Sbjct: 104 GM------TLFCPEEVSGVVEEYIKASSQLNWGQPIPEGHGFMAGSLQPVKPGDTYLIKN 157
Query: 192 DIV-VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVA 250
+ V + H + GY +K+L+ +Y+ G+++ +L+K GVEI + +P
Sbjct: 158 GLYQVTVLRCFHSVACVGYAFAERKKRLRPEYVGTPGRELGRLRKEGVEIEEETYAPLFV 217
Query: 251 FTGDTTSEFMLNPRNADALRAKILITEATFL-----DDEMSIEHAQQHGHTHLS 299
+ GDT+++ + + + ++ITE TF+ DD++ +E A++ GH H +
Sbjct: 218 YLGDTSTQ--VYEAHPEVFDYPVIITECTFIPDPQEDDQVIMERAERDGHIHWN 269
>gi|290984460|ref|XP_002674945.1| predicted protein [Naegleria gruberi]
gi|284088538|gb|EFC42201.1| predicted protein [Naegleria gruberi]
Length = 325
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 104/220 (47%), Gaps = 29/220 (13%)
Query: 85 GVSIGGHETCVIIPELKCAFDIGRCPTRAIQQN--FVFITHGHLDHIGGL----PMYVAS 138
G S T IP+L C D+G + + QN ITH H DH L P +V
Sbjct: 51 GHSKSAEATYFQIPQLSCNIDMGFIDKKYMSQNPNTFLITHTHADHTFYLAACQPAFVNR 110
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL----------NLDLVALDVGETYE 188
P ++VP E VE + L + +D++ ++ G+ E
Sbjct: 111 SN-----PNRVYVPKGKVEFVENFLHSCQELNAGKTLPRESVQERKPIDIIGVEPGDLIE 165
Query: 189 M---RNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS-GVEITDII 244
+++ V + K H +P GY IY +KKLKK+Y LKG +I KL+K G EI+DII
Sbjct: 166 KIGGKDNYVAKVVKCDHSVPCNGYAIYERKKKLKKEYSELKGAEIAKLRKEKGDEISDII 225
Query: 245 LSPEVAFTGDTTSE-FMLNPRNADALRAKILITEATFLDD 283
L P +A GDTT F +NP L +++ E TFL++
Sbjct: 226 LEPRIAIMGDTTYRVFEMNPF---LLEFPVIVVECTFLEN 262
>gi|397578361|gb|EJK50870.1| hypothetical protein THAOC_30020 [Thalassiosira oceanica]
Length = 389
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 47/246 (19%)
Query: 101 KCAFDIGRCP--TRAIQQNFVFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKE 157
+ AFDIG + AI +VF++HGH+DH+GGL + + + + + PT FVP +
Sbjct: 45 RVAFDIGATDGFSEAIPAKYVFVSHGHVDHVGGLFAHARAHAVSFGGQAPTYFVPAQLLP 104
Query: 158 DVEKLFEIHRSL----------------GNVELNLDLVALDVGE-------TYEMRNDIV 194
+EK + SL G + ++LV+++ G+ Y +
Sbjct: 105 QIEKCRDAMSSLDAVCATSADENDGSLRGKSLIKMNLVSVEDGDEVQLKGIQYGSKTSFY 164
Query: 195 VRPFKTHHVI-PSQGYVI-YLLRKKLKKQYIHLKGKQIEKLKKSGVEIT-DIILSPEVAF 251
R + H P+ GYV+ LK +Y L G +I +L KSGV I D + E +
Sbjct: 165 ARAVQVDHAGHPTLGYVLGSRTAGGLKPEYRQLNGARIRELVKSGVSIKGDPVERVEFGY 224
Query: 252 TGDTTSEFMLNPRNA--------DAL-------RAKILITEATFLD---DEMSIEHAQQH 293
TGDT + ++ + A D L A++L E TFLD DE++ + A +
Sbjct: 225 TGDTCARGLVKRQAAPTEEGLCSDGLPPIDQMFSAQVLFCELTFLDSNEDELAQQKADER 284
Query: 294 GHTHLS 299
GH H++
Sbjct: 285 GHLHVN 290
>gi|413950468|gb|AFW83117.1| hypothetical protein ZEAMMB73_323162 [Zea mays]
Length = 176
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 54/67 (80%)
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEK 232
ELN +LV L+V E YE+R D+ VR F+T+H IPSQGYVIY +++KLK+++I L G +I++
Sbjct: 5 ELNHNLVPLEVREEYELRRDLKVRAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKR 64
Query: 233 LKKSGVE 239
LK SGVE
Sbjct: 65 LKLSGVE 71
>gi|167521696|ref|XP_001745186.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776144|gb|EDQ89764.1| predicted protein [Monosiga brevicollis MX1]
Length = 945
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 18/244 (7%)
Query: 80 GYTIEGVSIGGHETCVII--PELKCA--FDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
GY + S+ G T V + PE K + FD+G P A VFI+H H DH+G L +
Sbjct: 100 GYELRVFSVAGVATTVRVTQPERKFSLLFDLGILPLWATNIQHVFISHCHTDHVGSLISH 159
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN-----LDLVALDVGETYEMR 190
+ L K PT +VP E ++ L E +L + L +V + G+ M
Sbjct: 160 CRASSLGG-KAPTYYVPAHATELLQDLKEGFDTLDGKSGDDSPPPLKIVPVQPGQAI-MV 217
Query: 191 NDIVVRPFKTHHVIPSQGYVIYL-LRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEV 249
+ PF THH +PS GY++Y + + +Y HL + I +L++ G + P++
Sbjct: 218 KGFKILPFATHHRVPSLGYLVYRQVPPTVPMEYRHLAPRAIAELRQQGA-FGEPQWIPDL 276
Query: 250 AFTGDT-TSEFMLNPRNADALRAKILITEATFLDDEM-SIEHAQQHGHTHLSEDIRQAVL 307
+ GD + P D RA++L+ EAT+L E+ S QH L R++V
Sbjct: 277 CYMGDCIIDSLAVEP---DIARARLLLCEATYLSPELCSYLETAQHERVVLMHFSRRSVP 333
Query: 308 KLQS 311
+ Q+
Sbjct: 334 RRQA 337
>gi|440798085|gb|ELR19154.1| nuclear RNase Z, putative [Acanthamoeba castellanii str. Neff]
Length = 323
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 6/230 (2%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
+ + G S G T + +++ D G PT I+ + VFI+H H DH LP+ V R
Sbjct: 18 WHVSGYSRAGEATGFYVKQMRWFLDAG-VPTSQIKPDIVFISHSHTDHSMMLPLLVDRRK 76
Query: 141 LYNLKPPTIFVP--PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
+ P VP + KL + + + + G+T ++ N
Sbjct: 77 PLRVYAPAEAVPFLAGYVAGMNKLNQQSDDYEDRSAGYTYIPVTTGQTVQIDNKFWAHVI 136
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
H + S GY + RK+LK ++ G+++ +L+K GVE+ + P +AF GDTT +
Sbjct: 137 DCEHPVTSVGYCFFEKRKRLKDEFKGKSGRELGQLRKDGVELNEEAELPYMAFLGDTTGK 196
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLK 308
+++ + + I F D QH H D+R L+
Sbjct: 197 VLVDHGKLLSTYPVVFIECTFFQPDHKDAAAGSQHLHW---SDLRPFALE 243
>gi|455790700|gb|EMF42552.1| hypothetical protein LEP1GSC067_4934 [Leptospira interrogans
serovar Lora str. TE 1992]
gi|456986358|gb|EMG21945.1| hypothetical protein LEP1GSC150_4036 [Leptospira interrogans
serovar Copenhageni str. LT2050]
Length = 146
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 63/112 (56%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH GLP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLLLTHSHLDHSCGLPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND 192
L LK P IFVP +KE ++K+ +++ + N +L A+ G+ ++ ++
Sbjct: 70 LRKLKSPKIFVPAPLKEPMQKILDLYSEIENFTYAYELNAVSPGDKIDLDSN 121
>gi|302883789|ref|XP_003040793.1| hypothetical protein NECHADRAFT_94874 [Nectria haematococca mpVI
77-13-4]
gi|256721684|gb|EEU35080.1| hypothetical protein NECHADRAFT_94874 [Nectria haematococca mpVI
77-13-4]
Length = 322
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 104/237 (43%), Gaps = 43/237 (18%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G C +A + +F+THGH DH P +V
Sbjct: 30 YVLTGKSRAAWHTSFVIPQLNLLLDAGLCVNKA-RPKHIFLTHGHSDHTLLSPAFVKRE- 87
Query: 141 LYNLKPPTIFVPPSI---------------------KEDVEKLFEIHRSLGNV-----EL 174
PP I+ P + ED ++L + N L
Sbjct: 88 ----DPPDIYCPVEMVKVLDDFLLARTMLNLGGLITAEDADQLADTSDEGSNDPDRNGWL 143
Query: 175 NLDLV-ALDVGETYEMRN--DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE 231
N + + G+T +R +++ F H +P GYV ++ LK ++ KG +++
Sbjct: 144 NTHITHGVQHGDTVNLRRTKNVIATAFDCDHTVPCVGYVFSMVTHGLKPEFTSRKGPELK 203
Query: 232 KLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAK----ILITEATFLDDE 284
L++SGVEIT +P AF GDTT+ + AD + + ++ITE +FL +E
Sbjct: 204 ALRESGVEITAPRSTPIFAFLGDTTAATLA----ADPVWLQEGIPVVITECSFLYEE 256
>gi|310799652|gb|EFQ34545.1| hypothetical protein GLRG_09689 [Glomerella graminicola M1.001]
Length = 324
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 118/266 (44%), Gaps = 48/266 (18%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G ++ +FITHGH DH +P +
Sbjct: 28 YVLTGKSRAAWHTSFVIPQLNLLLDAGLV-VNNLRPKHIFITHGHADHCLLIPAFTKRE- 85
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGN------------VELNLDLVALD------ 182
PP +F P +K+ +E F + ++L N + L LD +D
Sbjct: 86 ----DPPDVFCPVEMKKALED-FILAKTLLNRGGLYTSDDAESLGLPLDGKGVDDEGRTE 140
Query: 183 -------VGETYEMRNDIVV--RPFK--------THHVIPSQGYVIYLLRKKLKKQYIHL 225
+T +R+ VV R K H +PS GYV KL+ +Y L
Sbjct: 141 GERAFLGTHKTTAVRHGDVVPLRRLKGMDAMVIQCDHNVPSVGYVFTTTTHKLRPEYTAL 200
Query: 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKI--LITEATFLDD 283
G +++ L+ SGVE+T + +P AF GDTT+ + + LR I +ITE +FL D
Sbjct: 201 PGAELKSLRLSGVELTAPVTTPVFAFLGDTTASTL--AAEPEWLRQGIPVVITECSFLYD 258
Query: 284 EMSIEHAQQHGHTHLSEDIRQAVLKL 309
E + A++ HT +D+ + V K
Sbjct: 259 EHDAQ-AEKTKHTKW-KDLEKVVRKW 282
>gi|380483616|emb|CCF40512.1| hypothetical protein CH063_00356 [Colletotrichum higginsianum]
Length = 324
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 119/266 (44%), Gaps = 48/266 (18%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G + +F+THGH DH +P +
Sbjct: 28 YVLTGKSRAAWHTSFVIPQLNLLLDAGLV-VNNHRPKHIFLTHGHADHCLLIPAFTKRE- 85
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGN------------VELNLDLVALDV-GETY 187
PP +F P +K+ ++ F + ++L N V L LD +D G T
Sbjct: 86 ----DPPDVFCPVEMKKALDD-FILAKTLLNRGGLYTSNDAESVGLELDGKGVDEEGRTE 140
Query: 188 EMR-------------NDIV-VRPFK--------THHVIPSQGYVIYLLRKKLKKQYIHL 225
R D+V +R K H +PS GYV KL+ +Y L
Sbjct: 141 GERAFLGTHKTTAVKHGDVVPLRRLKGMNATVVQCDHNVPSVGYVFTTTTHKLRPEYTSL 200
Query: 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKI--LITEATFLDD 283
G +++ L++SGVE+T + +P AF GDTT+ + + + LR I +ITE +FL D
Sbjct: 201 PGPELKSLRQSGVELTAPVTTPVFAFLGDTTASTLA--ADPEWLRQGIPVVITECSFLHD 258
Query: 284 EMSIEHAQQHGHTHLSEDIRQAVLKL 309
E + A++ HT +D+ + V +
Sbjct: 259 EHDAQ-AEKTKHTKW-KDLEKVVRRW 282
>gi|357494723|ref|XP_003617650.1| Nuclear ribonuclease Z [Medicago truncatula]
gi|355518985|gb|AET00609.1| Nuclear ribonuclease Z [Medicago truncatula]
Length = 102
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
KG+++EGY +E +SIGGHE CVI + AFDIGRCP R + +F+ I+H H+ HI
Sbjct: 23 KGLNIEGYQVESLSIGGHEICVIFSNFRIAFDIGRCPPRFVSMDFLLISHAHMFHIVSFS 82
Query: 134 MYVASRGL 141
+Y S +
Sbjct: 83 LYFHSHNV 90
>gi|171686140|ref|XP_001908011.1| hypothetical protein [Podospora anserina S mat+]
gi|170943031|emb|CAP68684.1| unnamed protein product [Podospora anserina S mat+]
Length = 340
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 105/256 (41%), Gaps = 29/256 (11%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL 141
T+ G S T +IPEL D G A + VF+THGH DH P ++ +
Sbjct: 47 TLTGRSRAAWHTSFVIPELNLLLDAGLV-VGAHRPKHVFLTHGHSDHCLLTPAFLRADPP 105
Query: 142 YNLKPPTIFVPPSIKEDVEKLFEIHR-------------------SLGNVELNLDLVALD 182
+ PP ++ P + +E+ + + LG + +
Sbjct: 106 HT--PPLLYCPEEMARPLEQFLQGSQLLNKGFTGFGEGEGECRLGRLGRYTITTMKPGEE 163
Query: 183 VGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITD 242
G Y + H + S GYV KLK +Y LKG++I++L+ GVEIT
Sbjct: 164 TGLRYVKGQRWKATAVRCDHTVASIGYVFSTTTSKLKPEYQGLKGEEIKRLRTEGVEITG 223
Query: 243 IILSPEVAFTGDTTSEFMLNPRNADAL---RAKILITEATFLDDEMSIEHAQQHGHTH-- 297
+ P AF GDTT+ D +++ITE +FL + S EH +Q T
Sbjct: 224 EVEQPVFAFMGDTTAAVYEEGGEMDGFLKRGVRVVITECSFLRE--SREHREQADKTKHT 281
Query: 298 LSEDIRQAVLKLQSKV 313
+ D+ + V + V
Sbjct: 282 MWSDLERVVRRWPGVV 297
>gi|429854058|gb|ELA29091.1| RNase z [Colletotrichum gloeosporioides Nara gc5]
Length = 327
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 114/267 (42%), Gaps = 50/267 (18%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
YT+ G S T +IP+L D G ++ + +TH H DH P +
Sbjct: 31 YTLIGKSRAAWHTSFVIPQLNLLLDAGLV-VNDLRPKHIVLTHTHSDHCLLAPAFTKRE- 88
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFE---IHRSLGN------------VELNLDLVALDV-- 183
PP I +P + KLF+ + ++L N + L +D +D
Sbjct: 89 ----DPPDIILP----AECRKLFDDYVLAKTLLNRGGTYTGADAESLGLKVDGQGIDADG 140
Query: 184 -------------------GETYEMRN--DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQY 222
G+T +R ++ V FK H +PS GY+ KLK +Y
Sbjct: 141 RTEGDRAFLGTHNTIPVKPGDTLPLRKVKNMTVSVFKCDHNVPSVGYLFSTTNHKLKPEY 200
Query: 223 IHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLD 282
L G +I+KL+++GVEIT + +P AF GD T+ + ++ITE +FL
Sbjct: 201 TSLPGPEIKKLRQAGVEITAPVTTPVFAFLGDGTATTLAAEPEWLRQEVAVVITECSFLY 260
Query: 283 DEMSIEHAQQHGHTHLSEDIRQAVLKL 309
D+ + A++ HT +D+ + V K
Sbjct: 261 DKHDAQ-AEKTKHTKW-KDLEKVVRKW 285
>gi|336469976|gb|EGO58138.1| hypothetical protein NEUTE1DRAFT_24301 [Neurospora tetrasperma FGSC
2508]
gi|350290338|gb|EGZ71552.1| hypothetical protein NEUTE2DRAFT_41347, partial [Neurospora
tetrasperma FGSC 2509]
Length = 320
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 114/260 (43%), Gaps = 40/260 (15%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G ++ + +FITHGH DH P+++
Sbjct: 25 YVLTGKSRAAWHTSFVIPQLNLLLDAGLVINKS-RPKHIFITHGHNDHALSSPVFIKRE- 82
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHR--SLGNV-------ELNLDL------------- 178
PP P +K+ +E + +LG + EL L++
Sbjct: 83 ----DPPDFHCPVGMKQVLEDYLRANTMLNLGGLIAPRPGKELPLEVRDPETGEVVRSEI 138
Query: 179 ------VALDVGETYEMR--NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQI 230
L+ G+ +R +I F H +P GY+ KLK ++ L K++
Sbjct: 139 RPTHVTYGLEAGDVVPLRRTKNISAVAFACDHTVPCLGYLFQQTTHKLKPEFAKLPPKEL 198
Query: 231 EKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAK--ILITEATFLDDEMSIE 288
+ ++ SG E+T + SP AF GDTT++ + L K ++ITE +FL +E +
Sbjct: 199 KAIRASGQELTAPVTSPIFAFLGDTTTKTLEEEPMRGWLNEKLPVVITECSFLYEEHRAQ 258
Query: 289 HAQQHGHTHLSEDIRQAVLK 308
A++ HT + D+ + + K
Sbjct: 259 -AEKTKHT-IWADLEKVIRK 276
>gi|340959649|gb|EGS20830.1| hypothetical protein CTHT_0026680 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 359
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 108/270 (40%), Gaps = 58/270 (21%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL 141
T+ G S T +IP+L D G C ++ +F+THGH DH P +V
Sbjct: 29 TLTGRSRAAWHTSFVIPQLNLLLDAGLC-VNNLRPKHIFLTHGHSDHTLLTPAFVKRE-- 85
Query: 142 YNLKPPTIFVPPSIKEDVEKLFEIH--------RSLGNVELNLD---------------- 177
PP IF P +K+ ++ + +LG++E +L
Sbjct: 86 ---DPPDIFCPAEMKQVLDNFINANTVLNLGGLWTLGDLETDLSSSDLESTNSSDSSGSG 142
Query: 178 -----------------------LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
L L G + F H +P GYV + +
Sbjct: 143 NGPGDGLLRTHITHPLVPSQTVTLRRLVGGSGNSAKPSWTATAFACDHTVPCLGYVFHQI 202
Query: 215 RKKLKKQYIHLKGKQIEKLKKS-GVEITDIILSPEVAFTGDTTSEFM-LNPRNADALRA- 271
KLK +Y L ++ L++S G +IT + +P AF GDTT+ + NP L
Sbjct: 203 TYKLKPEYRSLSPAELRTLRQSIGSDITQPVATPVFAFLGDTTALTLDQNPEVQKWLEEG 262
Query: 272 -KILITEATFLDDEMSIEHAQQHGHTHLSE 300
K++ITE +FL +E + A++ HT ++
Sbjct: 263 LKVVITECSFLREEHRAQ-AEKTKHTLWAD 291
>gi|322700389|gb|EFY92144.1| 3'-tRNA processing endoribonuclease [Metarhizium acridum CQMa 102]
Length = 340
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 109/256 (42%), Gaps = 47/256 (18%)
Query: 83 IEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY 142
+ G S T +IP+L D G C + + +F+THGH DH +A +
Sbjct: 45 LTGRSRAAWHTSFVIPQLNVLLDAGLCVNKQ-RPKHIFLTHGHADHT-----LLAYAFVK 98
Query: 143 NLKPPTIFVPPSIKE---------------------DVEKL-FEIHRSLGNVE------- 173
PP I+ P +K D EK +++ + G +
Sbjct: 99 REDPPDIYCPAEMKHIFDNHILSTTMMNLGGLVEVGDAEKQGYKVDNTNGGTDADGRTPQ 158
Query: 174 ----LNLDLV-ALDVGETYEMR--NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK 226
LN + + G+T +R I F H +P GYV +L ++Y L
Sbjct: 159 ERAFLNTHVTHGVKHGDTVPLRRLKGITATAFSCDHTVPCVGYVFSSTTNRLMQEYKSLA 218
Query: 227 GKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLN--PRNADALRAKILITEATFLDDE 284
G Q++ L++SGVEIT+ P AF GDTT + + P D + ++ITE +FL ++
Sbjct: 219 GPQLKDLRQSGVEITEPHSVPMFAFLGDTTIATLASEPPWLRDGI--PVVITECSFLHED 276
Query: 285 MSIEHAQQHGHTHLSE 300
+ + A + HT S+
Sbjct: 277 HAAQ-ADKTKHTKWSD 291
>gi|322707813|gb|EFY99391.1| RNase Z (ISS) [Metarhizium anisopliae ARSEF 23]
Length = 327
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 108/261 (41%), Gaps = 57/261 (21%)
Query: 83 IEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY 142
+ G S T +IP+L D G C + + +F+THGH DH +A +
Sbjct: 32 LTGRSRAAWHTSFVIPQLNLLLDAGLCVNKQ-RPKHIFLTHGHADHT-----LLAFAFVK 85
Query: 143 NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL-------------------------- 176
PP ++ P +K +F+ H LG +NL
Sbjct: 86 REDPPDVYCPAEMKH----IFDTH-ILGTTMMNLGGLVEVGDAEKQGYKVDDTNGETDAD 140
Query: 177 -----DLVALDV--------GETYEMRN--DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQ 221
+ L+ G+T +R I F H +P GYV +LK++
Sbjct: 141 GRTPQERAFLNTHVTHGVMHGDTVPLRRLKGITATAFNCDHTVPCVGYVFSSTTNRLKQE 200
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLN--PRNADALRAKILITEAT 279
Y L G Q+ L++SGVEIT+ P AF GDTT + + P D + ++ITE +
Sbjct: 201 YKSLAGPQLRDLRRSGVEITEPHSVPMFAFLGDTTIATLASEPPWLRDGI--PVVITECS 258
Query: 280 FLDDEMSIEHAQQHGHTHLSE 300
FL ++ + + A + HT S+
Sbjct: 259 FLYEDHAAQ-ADKTKHTKWSD 278
>gi|85081287|ref|XP_956690.1| hypothetical protein NCU00426 [Neurospora crassa OR74A]
gi|28917764|gb|EAA27454.1| conserved hypothetical protein [Neurospora crassa OR74A]
gi|40882153|emb|CAF05980.1| conserved hypothetical protein [Neurospora crassa]
Length = 359
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 114/263 (43%), Gaps = 45/263 (17%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G ++ + +FITHGH DH P+++
Sbjct: 49 YILTGKSRAAWHTSFVIPQLNLLLDAGLVINKS-RPKHIFITHGHNDHALSSPVFIKRE- 106
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHR--SLGNV-------ELNLDL------------- 178
PP P +K+ +E + +LG + EL L++
Sbjct: 107 ----DPPDFHCPVGMKQVLEDYLRANTMLNLGGLIAPRPGKELPLEIRDPETGEVVRSEI 162
Query: 179 ------VALDVGETYEMR--NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQI 230
L+ G+ +R +I F H +P GY+ KLK ++ L K++
Sbjct: 163 RPTHVTYGLEAGDVVPLRRTKNISAVAFACDHTVPCLGYLFQQTTHKLKPEFAKLPPKEL 222
Query: 231 EKLKKSGVEITDIILSPEVAFTGDTTS-----EFMLNPRNADALRAKILITEATFLDDEM 285
+ ++ SG E+T + SP AF GDTT+ E M D L ++ITE +FL +E
Sbjct: 223 KAIRASGQELTAPVTSPIFAFLGDTTTKTLEEEPMRGWLTNDKL--PVVITECSFLYEEH 280
Query: 286 SIEHAQQHGHTHLSEDIRQAVLK 308
+ A++ HT + D+ + + K
Sbjct: 281 RAQ-AEKTKHT-IWADLEKVIRK 301
>gi|302405763|ref|XP_003000718.1| RNase Z [Verticillium albo-atrum VaMs.102]
gi|261360675|gb|EEY23103.1| RNase Z [Verticillium albo-atrum VaMs.102]
Length = 329
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 118/272 (43%), Gaps = 49/272 (18%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G + + +F+THGH DH+ P +V
Sbjct: 32 YVLTGKSRAAWHTSFVIPQLNLLLDAGLVVNKE-RPKHIFLTHGHSDHVLLSPAFVKRE- 89
Query: 141 LYNLKPPTIFVPPSIKEDVEKLF---EIHRSLGNVELN-LDLVALDV----------GET 186
PP I+ P +K+ + + G+++ + + L V G T
Sbjct: 90 ----DPPDIYCPVEMKKFFDDYILAKTMMNRGGHIQYDEAEARGLPVDKDAPDVDDDGRT 145
Query: 187 YEMR--------------NDIVVRP--------FKTHHVIPSQGYVIYLLRKKLKKQYIH 224
R ++I +R F+ H +P GYV +LK +Y
Sbjct: 146 PSQRAFLGTHVTHPVVPGDEIPLRRLKGMSASVFRCDHNVPCVGYVFSTTTHRLKPEYTS 205
Query: 225 LKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLN--PRNADALRAKILITEATFLD 282
L G++I+ L+ SGV+IT SP AF GDTT+ + P D + ++ITE +FL
Sbjct: 206 LAGQEIKALRTSGVDITAPHTSPVFAFLGDTTASVLAAEPPWLRDGI--PVVITECSFLY 263
Query: 283 DEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS 314
+E + A++ HT+ + +AV++ K +
Sbjct: 264 EEHKAQ-AEKTKHTYWPD--LEAVVRRWPKTT 292
>gi|336268156|ref|XP_003348843.1| hypothetical protein SMAC_01866 [Sordaria macrospora k-hell]
gi|380094101|emb|CCC08318.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 359
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 110/268 (41%), Gaps = 55/268 (20%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G + + +FITHGH DH P+Y+
Sbjct: 48 YVLTGKSRAAWHTSFVIPQLNLLLDAGLVVNNS-RPKHIFITHGHNDHALLSPVYIKRED 106
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD-LVA------------------- 180
PP P +K+ ++ N LNL L+A
Sbjct: 107 -----PPDFHCPVGMKQVLQDYLR-----ANTMLNLGGLIAPRPGKEIPLVEKDPETGEV 156
Query: 181 -------------LDVGETYEMR--NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
L+ G+ +R +I F H +P GY+ KLK ++ L
Sbjct: 157 VKEVIRPTHVTYGLEAGDVVPLRRTKNISAVAFACDHTVPCLGYLFQQTTHKLKPEFASL 216
Query: 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTTS-----EFMLNPRNADALRAKILITEATF 280
K+++ ++ SG E+T + +P AF GDTT+ E M D L ++ITE +F
Sbjct: 217 PPKELKAIRASGQELTAPVTTPMFAFLGDTTTKTLEEEPMRGWLENDKL--PVVITECSF 274
Query: 281 LDDEMSIEHAQQHGHTHLSEDIRQAVLK 308
L +E + A++ HT L D+ + V +
Sbjct: 275 LYEEHRAQ-AEKTKHT-LWADLEKVVRR 300
>gi|374990010|ref|YP_004965505.1| hypothetical protein SBI_07254 [Streptomyces bingchenggensis BCW-1]
gi|297160662|gb|ADI10374.1| hypothetical protein SBI_07254 [Streptomyces bingchenggensis BCW-1]
Length = 327
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 105/236 (44%), Gaps = 25/236 (10%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
+T+ G S +T IPEL+C+ D G C R Q + V +TH H DH L ++ASR
Sbjct: 34 FTLTGYSRANDKTFFHIPELRCSLDAGLCEGR--QVDTVLLTHTHHDHAKDLD-FLASRA 90
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLG---NVELNLDLVALDVGETYEM-RNDIVVR 196
++ P V P ++ + E++ G ++ L + G+ + R VR
Sbjct: 91 GTDIYLPAEAV-PYVESFLRASAELNHGAGYDPDLAGGYRLHGVRQGDEFTFGRRAHHVR 149
Query: 197 PFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------------GKQIEKLKKSGVEITDII 244
+ H +P GY + + K L QY L+ G+ + + +K G++ +
Sbjct: 150 VLECEHKVPCVGYAVSEVGKALLPQYEELRRSLVEEGRGGEFGRIMARRRKEGIKTEQDV 209
Query: 245 LSPEVAFTGDT-TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLS 299
P A+ GDT S F NP ++ITE TFL D + A + GHT S
Sbjct: 210 RRPLFAYLGDTHVSVFERNPW---LFTYPVVITECTFLHDS-ELGRADRVGHTVWS 261
>gi|346972752|gb|EGY16204.1| hypothetical protein VDAG_07368 [Verticillium dahliae VdLs.17]
Length = 341
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 109/258 (42%), Gaps = 47/258 (18%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G + + +F+THGH DH+ P +V
Sbjct: 32 YVLTGKSRAAWHTSFVIPQLNLLLDAGLVVNKE-RPKHIFLTHGHSDHVLLSPAFVKRE- 89
Query: 141 LYNLKPPTIFVPPSIKEDVEKLF---EIHRSLGNVELN-LDLVALDV----------GET 186
PP I+ P +K + + G+++ + + L V G T
Sbjct: 90 ----DPPDIYCPVEMKRFFDDYILAKTMMNRGGHIQYDEAEARGLPVDKDAPDVDDDGRT 145
Query: 187 YEMR--------------NDIVVRP--------FKTHHVIPSQGYVIYLLRKKLKKQYIH 224
R ++I +R F+ H +P GYV +LK +Y
Sbjct: 146 PSQRAFLGTHVTHPVVPGDEIPLRRLKGMSATVFQCDHNVPCVGYVFSTTTHRLKPEYTS 205
Query: 225 LKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLN--PRNADALRAKILITEATFLD 282
L G +I+ L+ SGV+IT SP AF GDTT+ + P D + ++ITE +FL
Sbjct: 206 LSGNEIKALRTSGVDITAPHTSPVFAFLGDTTASVLAAEPPWLRDGI--PVVITECSFLY 263
Query: 283 DEMSIEHAQQHGHTHLSE 300
+E + A++ HT+ +
Sbjct: 264 EEHRAQ-AEKTKHTYWPD 280
>gi|367050100|ref|XP_003655429.1| hypothetical protein THITE_15187, partial [Thielavia terrestris
NRRL 8126]
gi|347002693|gb|AEO69093.1| hypothetical protein THITE_15187, partial [Thielavia terrestris
NRRL 8126]
Length = 322
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 107/262 (40%), Gaps = 38/262 (14%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL 141
T+ G S T +IP+L D G ++ +F+THGH DH P +V
Sbjct: 26 TLTGRSRAAWHTSFVIPQLNLLLDAGLV-VNNLRPKHIFLTHGHSDHTLLTPAFVKRS-- 82
Query: 142 YNLKPPTIFVPPSIKEDVEKLFEIHRSL---GNV---ELNLDLV---------------- 179
PP IF P +K+ ++ L G + E N
Sbjct: 83 ---DPPDIFCPAEMKDALDGFINAKTMLSEGGGIWPPESNATATKPPPPLHPLLRTHTTH 139
Query: 180 ALDVGETYEMRN-----DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLK 234
L G T +R+ F H +P GY+ + KL+ QY L G ++ +L+
Sbjct: 140 GLHPGTTVTLRHLSPPPTYTATAFACDHTVPCLGYLFSAVTPKLQPQYRGLPGAELRRLR 199
Query: 235 -KSGVEITDIILSPEVAFTGDTTSEFMLN-PRNADALRA-KILITEATFLDDEMSIEHAQ 291
+ GV IT +P +AF GD T+ + + P R +++TE +FL +E + A+
Sbjct: 200 EEEGVAITAPAAAPVLAFLGDGTAATLRDRPETVGLDRGVAVVVTECSFLWEEHRAQ-AE 258
Query: 292 QHGHTHLSEDIRQAVLKLQSKV 313
+ HT L D+ V + V
Sbjct: 259 RTRHT-LWSDLEPVVRRWPRTV 279
>gi|340516722|gb|EGR46969.1| predicted protein [Trichoderma reesei QM6a]
Length = 337
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 101/260 (38%), Gaps = 51/260 (19%)
Query: 83 IEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY 142
+ G S T ++P L D G + +F+THGH DH P +V
Sbjct: 38 LTGRSRAAWHTSFVVPSLNLLLDAGLI-VNNQRPKHIFLTHGHSDHTLLAPAFVKRD--- 93
Query: 143 NLKPPTIFVPPSIKE------------------------------DVEKLFEIHRSLGNV 172
PP +F P +++ D E + R LG
Sbjct: 94 --DPPDVFCPAQMRDALDDFVLAKTLLNLGGEIRADDAEARGLAVDDEAVLARSRQLGRT 151
Query: 173 ELNLDLVA------LDVGETYEMR----NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQY 222
++ L G+T +R I F H +P GYV + ++L+ ++
Sbjct: 152 PSATAFLSTHITHGLRAGDTVPLRRAQAQGIAATAFACDHTVPCLGYVFHKTTQRLRPEF 211
Query: 223 IHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKI--LITEATF 280
L G +++ L+++G +T +P AF GDTT+ + + LR +I ++TE +F
Sbjct: 212 ASLPGPELQALRRAGTALTAPFTAPVFAFLGDTTARTLAA--EPEWLRREIPVVVTECSF 269
Query: 281 LDDEMSIEHAQQHGHTHLSE 300
L E + A+ HT E
Sbjct: 270 LYAEHEPQAAKTK-HTFWRE 288
>gi|15643627|ref|NP_228673.1| hypothetical protein TM0864 [Thermotoga maritima MSB8]
gi|403252604|ref|ZP_10918913.1| hypothetical protein EMP_02484 [Thermotoga sp. EMP]
gi|418044966|ref|ZP_12683062.1| ribonuclease Z [Thermotoga maritima MSB8]
gi|61680268|pdb|1WW1|A Chain A, Crystal Structure Of Trnase Z From Thermotoga Maritima
gi|61680269|pdb|1WW1|B Chain B, Crystal Structure Of Trnase Z From Thermotoga Maritima
gi|158428284|pdb|2E7Y|A Chain A, High Resolution Structure Of T. Maritima Trnase Z
gi|158428285|pdb|2E7Y|B Chain B, High Resolution Structure Of T. Maritima Trnase Z
gi|4981399|gb|AAD35946.1|AE001753_2 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678048|gb|EHA61195.1| ribonuclease Z [Thermotoga maritima MSB8]
gi|402812094|gb|EJX26574.1| hypothetical protein EMP_02484 [Thermotoga sp. EMP]
Length = 280
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 21/217 (9%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGR-----CPTRAIQQNFVFITHGHLDHIGGLPMYV 136
I G S T + + FD G ++ +VF+THGH+DHI GL V
Sbjct: 2 NIIGFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVV 61
Query: 137 ASR--GLYNLKPPTIFVPPSIKEDVEKLFE-IHRSLGNVELNLDLVALDVGETYEMRN-- 191
R G+ + + P P VE+ E I R+ ++ + ++ L GE +RN
Sbjct: 62 NIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAG 121
Query: 192 --DIVVRPFKTHHVIP--SQGYVIYLLRKKLKKQYIHLKGKQIEKL-KKSGVE-ITDIIL 245
V+PF+T HV S GY I+ +R+KLKK++ L K+I +L K+ G + +T+
Sbjct: 122 GFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYH 181
Query: 246 SPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLD 282
+ +GD+ + L+P ++LI E TFLD
Sbjct: 182 KKVLTISGDSLA---LDPEEIRG--TELLIHECTFLD 213
>gi|170287870|ref|YP_001738108.1| ribonuclease Z [Thermotoga sp. RQ2]
gi|170175373|gb|ACB08425.1| ribonuclease Z [Thermotoga sp. RQ2]
Length = 280
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 21/217 (9%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGR-----CPTRAIQQNFVFITHGHLDHIGGLPMYV 136
I G S T + + FD G ++ +VF+THGH+DHI GL V
Sbjct: 2 NIIGFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVV 61
Query: 137 ASR--GLYNLKPPTIFVPPSIKEDVEKLFE-IHRSLGNVELNLDLVALDVGETYEMRN-- 191
R G+ + + P P VE+ E I R+ ++ + ++ L GE +RN
Sbjct: 62 NIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAG 121
Query: 192 --DIVVRPFKTHHVIP--SQGYVIYLLRKKLKKQYIHLKGKQIEKL-KKSGVE-ITDIIL 245
V+PF+T HV S GY I+ +R+KLKK++ L K+I +L K+ G + +T+
Sbjct: 122 GFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYH 181
Query: 246 SPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLD 282
+ +GD+ + L+P ++LI E TFLD
Sbjct: 182 KKVLTISGDSLA---LDPEEIRG--TELLIHECTFLD 213
>gi|326427790|gb|EGD73360.1| hypothetical protein PTSG_05071 [Salpingoeca sp. ATCC 50818]
Length = 486
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 28/241 (11%)
Query: 78 LEGYTIEGVSIGGHETCVII------PELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGG 131
L+G I S GH TC+ + P L FDIG C T ++Q VF++H H DH+G
Sbjct: 5 LDGLEITSHSSAGHGTCITVTTSNPLPRLSICFDIGACLTESVQAQHVFVSHCHTDHVGS 64
Query: 132 LPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLV---------ALD 182
L ++ +R + + P T +VP + + ++ ++ +L+ D V +
Sbjct: 65 LMLHARAREMCS-GPATYYVPEPVIPHLRRMQQLF-----ADLDSDGVPKVPPARFEPIW 118
Query: 183 VGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKK---LKKQYIHLKGKQIEKLKKSGVE 239
G + V+ H + + L R+ L ++ L +I+ L V
Sbjct: 119 PGRVVPVGKGFAVKVLAVEHRV-HNAFAFVLQRRDRLPLPPEFRGLPPMEIKALYDENVV 177
Query: 240 ITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLS 299
+ ++GD +L ++A L ++LI E T+LDD + A+++ H HL
Sbjct: 178 QKFGPPKALLTYSGDCVLRSLL--KHAFVLSTRVLICELTYLDDRTESK-AEKYMHVHLK 234
Query: 300 E 300
E
Sbjct: 235 E 235
>gi|397571045|gb|EJK47594.1| hypothetical protein THAOC_33677 [Thalassiosira oceanica]
Length = 862
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 105/244 (43%), Gaps = 67/244 (27%)
Query: 101 KCAFDIGRCP--TRAIQQNFVFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKE 157
+ AFDIG + AI +VF++HGH+DH+GGL + + + + PT FVP +
Sbjct: 45 RVAFDIGATDGFSEAIPAKYVFVSHGHVDHVGGLFAHARAHAVSCGGQAPTYFVPAQLLP 104
Query: 158 DVEKLFEIHRSL----------------GNVELNLDLVALDVGE-------TYEMRNDIV 194
+EK + SL G + ++LV+++ G+ Y +
Sbjct: 105 QIEKCRDAMSSLDAVCATSADENDGSLRGKSLIKMNLVSVEDGDEVQLKGIQYGSKTSFY 164
Query: 195 VRPFKTHHVI-PSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
R + H P+ GY++ K + +KG +E++ E +TG
Sbjct: 165 ARAVQVDHAGHPTLGYLV--------KSGVSIKGDPVERV--------------EFGYTG 202
Query: 254 DTTSEFMLNPRNA--------DAL-------RAKILITEATFLD---DEMSIEHAQQHGH 295
DT + ++ + A D L A++L E TFLD DE++ + A + GH
Sbjct: 203 DTCARGLVKRQAAPTEEGLCSDGLPPIDQMFSAQVLFCELTFLDSNEDELAQQKADERGH 262
Query: 296 THLS 299
H++
Sbjct: 263 LHVN 266
>gi|358397598|gb|EHK46966.1| hypothetical protein TRIATDRAFT_239349 [Trichoderma atroviride IMI
206040]
Length = 330
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 104/256 (40%), Gaps = 46/256 (17%)
Query: 83 IEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY 142
+ G S T +IP L D G + + +F+THGH DH P +V
Sbjct: 34 LTGRSRAAWHTSFVIPSLNLLLDAGLV-VNSQRPKHIFLTHGHSDHTLLAPAFVKRD--- 89
Query: 143 NLKPPTIFVPPSIKEDVEKLFEIHRSLGN------------VELNLDLV----------- 179
PP +F P +++ ++ F + ++L N V L +D
Sbjct: 90 --DPPDVFCPAEMRDALDD-FVLAKTLLNRGGEIGVEDAAAVGLAVDDAVAARSEALGRS 146
Query: 180 -------------ALDVGETYEMRN--DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH 224
AL G+ +R I F+ HH +P GYV ++L+ +
Sbjct: 147 PSATAFLGTHRTHALQPGDVVPLRRAPGITATAFRCHHQVPCLGYVFSKTTQRLRPELAS 206
Query: 225 LKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDE 284
L G +++ L+K+G ++T +P AF GDTT+ + ++I E +FL +E
Sbjct: 207 LAGPELQALRKAGEQLTAPHTAPIFAFMGDTTAATLAEAPAWLREGIPVVIHECSFLYEE 266
Query: 285 MSIEHAQQHGHTHLSE 300
+ A+ HT S+
Sbjct: 267 HRAQAAKTK-HTLWSD 281
>gi|332796924|ref|YP_004458424.1| ribonuclease Z [Acidianus hospitalis W1]
gi|332694659|gb|AEE94126.1| ribonuclease Z [Acidianus hospitalis W1]
Length = 288
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 52/210 (24%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
N + ITH H DH+ GLP + + G+Y+ K +++ +K+ + K+FE + +
Sbjct: 53 NLIAITHLHADHVLGLPSLIQTMGMYSRKEK-LYIIGDVKDLLNKVFE--ETYFEPPFKI 109
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
+ V ++YE N++ + PFKT HV+ SQG YL+ +K KK IEKL K
Sbjct: 110 EYV-----DSYE-DNELKITPFKTCHVVKSQG---YLIEEKDKKNI------DIEKLTKE 154
Query: 237 GVEITDII---------------LSPE----------VAFTGDTT-SEFMLNPRNADALR 270
G++ II L PE +A+TGDT + ++N
Sbjct: 155 GIKDWRIIRQLKAGKEVIFNGRKLYPEDYLITKKGIRIAYTGDTAICDSVINSVKG---- 210
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSE 300
+LI ++TFLDD +A+++GH+ +++
Sbjct: 211 VDLLIHDSTFLDD----INAKEYGHSTVTD 236
>gi|358380828|gb|EHK18505.1| hypothetical protein TRIVIDRAFT_58477 [Trichoderma virens Gv29-8]
Length = 331
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 97/239 (40%), Gaps = 43/239 (17%)
Query: 83 IEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY 142
+ G S T +IP L D G + +F+THGH DH P +V
Sbjct: 35 LTGRSRAAWHTSFVIPSLNLLLDAGLV-VNNQRPKHIFLTHGHSDHTLLAPAFVKRD--- 90
Query: 143 NLKPPTIFVPPSIK---------------------ED------------VEKLFEIHRSL 169
PP IF P ++ ED V + E+ R+
Sbjct: 91 --DPPDIFCPMEMRTAFDNFVLAKTILNLGGEIGPEDADIRGLPIDDQVVARSEELGRTP 148
Query: 170 GNVE-LNLDLV-ALDVGETYEMR--NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
+ LN L G++ +R I F+ H +P GYV ++LK ++ L
Sbjct: 149 SSTAFLNTHFTHGLHPGDSVPLRRAQGITATAFRCDHTVPCLGYVFSKTTQRLKPEFASL 208
Query: 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDE 284
G +++ L++SG E+T +P AF GDTT++ + + ++ITE +FL +E
Sbjct: 209 SGPELQALRRSGTELTAPHTTPIFAFLGDTTTQTLEAEPSWLQEGIPVVITECSFLYEE 267
>gi|338730980|ref|YP_004660372.1| RNAse Z [Thermotoga thermarum DSM 5069]
gi|335365331|gb|AEH51276.1| RNAse Z [Thermotoga thermarum DSM 5069]
Length = 279
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 101/231 (43%), Gaps = 25/231 (10%)
Query: 91 HETCVIIPELKCAFDIGR-----CPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY--- 142
+ T V + FD G R +VF+THGH+DHI GL V +R
Sbjct: 11 YSTWVYYAPERILFDAGEGVSLTMSNRIYAVKYVFLTHGHIDHIAGLWSIVNTRNNSMGD 70
Query: 143 NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN----DIVVRPF 198
KP +F P K E L I ++ ++ L + GE +R V PF
Sbjct: 71 REKPLYVFYPKGNKAIEEWLQFIRKTSDDLRFELIDQPVSAGERIFLRQAGGFSRYVVPF 130
Query: 199 KTHHV--IPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS--GVEITDIILSPEVAFTGD 254
K H P GY + RKKLK +Y +L +I KL ++ IT+I + +GD
Sbjct: 131 KVRHTGSDPCFGYSVIETRKKLKDEYKNLPESEIAKLARTLGSDAITEIYEKKLLTISGD 190
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
T + ++P+ DA ++IL+ + TFL + + + H + E I A
Sbjct: 191 T---YGIDPQ--DAKDSEILVHDCTFL----KVSDRKMNAHASIEEVIEIA 232
>gi|124005252|ref|ZP_01690093.1| hypothetical protein M23134_07750 [Microscilla marina ATCC 23134]
gi|123989074|gb|EAY28652.1| hypothetical protein M23134_07750 [Microscilla marina ATCC 23134]
Length = 314
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 36/243 (14%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
+TIEG S G +T IP+LK D R Q ++V +TH H DHI + Y+ASR
Sbjct: 20 FTIEGYSRSGDKTFFYIPQLKLCLDAALAEGR--QGDYVLVTHTHNDHIADIE-YLASRN 76
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGN-------VELNLDLVALDVGETYEM-RND 192
I++P + + +E+ R L + + + + + G+T+ + +ND
Sbjct: 77 -----GVQIYLPKASQNYLEEYIIARRCLNHSAPYNPRLRGSYSITGVAGGDTFYIGKND 131
Query: 193 -IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQI----------------EKLKK 235
V+ H I GY +++LK +Y LK +++ ++ K+
Sbjct: 132 RYQVKVVNCEHSIVCVGYAFAEKKQRLKPEYEALKQQKMAEGKMQEFGQLMAQKKQEAKQ 191
Query: 236 SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
G + + P F GDT + N NA +ITE TFL ++ +A + H
Sbjct: 192 KGETVEETYYQPLFVFMGDTHASVFDN--NAWLFDYPTIITECTFLKP-VNEAYANERCH 248
Query: 296 THL 298
TH
Sbjct: 249 THW 251
>gi|148269208|ref|YP_001243668.1| ribonuclease Z [Thermotoga petrophila RKU-1]
gi|281411506|ref|YP_003345585.1| ribonuclease Z [Thermotoga naphthophila RKU-10]
gi|147734752|gb|ABQ46092.1| RNAse Z [Thermotoga petrophila RKU-1]
gi|281372609|gb|ADA66171.1| ribonuclease Z [Thermotoga naphthophila RKU-10]
Length = 280
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 104/217 (47%), Gaps = 21/217 (9%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGR-----CPTRAIQQNFVFITHGHLDHIGGLPMYV 136
I G S T + + FD G ++ +VF+THGH+DHI GL V
Sbjct: 2 NIIGFSKALFSTWIYYSPERILFDAGEGVSTILGSKVYAFKYVFLTHGHVDHIAGLWGVV 61
Query: 137 ASR--GLYNLKPPTIFVPPSIKEDVEKLFE-IHRSLGNVELNLDLVALDVGETYEMRN-- 191
R G+ + + P P VE+ E I R+ ++ + ++ L GE +R+
Sbjct: 62 NIRNNGMGDREKPLDVFYPRGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGEKVFLRDAG 121
Query: 192 --DIVVRPFKTHHVIP--SQGYVIYLLRKKLKKQYIHLKGKQIEKL-KKSGVE-ITDIIL 245
V+PF+T HV S GY I+ +R+KLKK++ L K+I +L K+ G + +T+
Sbjct: 122 GFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYH 181
Query: 246 SPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLD 282
+ +GD+ + L+P ++LI E TFLD
Sbjct: 182 KKVLTISGDSLA---LDPEEIRG--TELLIHECTFLD 213
>gi|146304551|ref|YP_001191867.1| ribonuclease Z [Metallosphaera sedula DSM 5348]
gi|172046934|sp|A4YHP1.1|RNZ_METS5 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|145702801|gb|ABP95943.1| RNAse Z [Metallosphaera sedula DSM 5348]
Length = 291
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 106/204 (51%), Gaps = 38/204 (18%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELN 175
N + ITH H DH+ GLP + + G+Y+ K I P +K+ + + FE R+ +
Sbjct: 54 NVIAITHLHADHVLGLPSLIQTMGMYDRKERLYILGPEGLKDLLTETFE--RTYFSPNFP 111
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------YLLRKKLKKQYIHLKGKQ 229
++ V+ +YE + I VRPF+T HV+PSQGY++ L ++L+++ + +
Sbjct: 112 IEFVS-----SYESQG-IRVRPFRTCHVVPSQGYLVEEKDTANLDAERLRREGV--TDWR 163
Query: 230 IEKLKKSGVEI--TDIILSPE----------VAFTGDTT-SEFMLNPRNADALRAKILIT 276
+ ++ K G E+ D +L PE +A+TGDT E ++N +L+
Sbjct: 164 VMRMLKEGKEVPWGDRVLKPEDYLIVKRGIRIAYTGDTRPCETVINSVKG----VDLLLH 219
Query: 277 EATFLDDEMSIEHAQQHGHTHLSE 300
++TF E I+ A ++GH+ +E
Sbjct: 220 DSTF---EQGID-ASEYGHSTSTE 239
>gi|290958472|ref|YP_003489654.1| hypothetical protein SCAB_40281 [Streptomyces scabiei 87.22]
gi|260647998|emb|CBG71105.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 330
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 104/243 (42%), Gaps = 32/243 (13%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
G T+ G S +T +PEL+C+ D G R ++ V +TH HLDH L Y+A+R
Sbjct: 34 GLTLTGYSRANDKTFFHLPELRCSVDAGLAEGRQVET--VLLTHTHLDHSKDLD-YLAAR 90
Query: 140 G----LYNLKPPTIFVPPSIKEDVE----KLFEIHRSLGNVELNLDLVALDVGETYEMRN 191
+Y + ++ E F+ R+ + L V + R
Sbjct: 91 DAGVDIYLPAAAEPYAAAYLRAASELNHGAGFDASRA---PDCRLHGVRPGAEFSVGRRG 147
Query: 192 DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------------GKQIEKLKKSGVE 239
+ VR + H +P GY + LK +Y LK G+ I + +K G
Sbjct: 148 EYAVRVVECLHKVPCVGYCFAEKKTVLKPEYEELKASMVAAGRAGEFGRIIAERRKEGPG 207
Query: 240 ITDI-ILSPEVAFTGDT-TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTH 297
D I P AF GDT S F NP D ++ITE T+LDDE + A+Q GHT
Sbjct: 208 TVDQEIRRPAFAFLGDTHPSVFARNPWLFDY---PVVITECTYLDDE-RLGRARQVGHTV 263
Query: 298 LSE 300
SE
Sbjct: 264 WSE 266
>gi|15791057|ref|NP_280881.1| hypothetical protein VNG2239C [Halobacterium sp. NRC-1]
gi|169236807|ref|YP_001690007.1| ribonuclease Z [Halobacterium salinarum R1]
gi|41017581|sp|Q9HN60.1|RNZ_HALSA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808640|sp|B0R7E2.1|RNZ_HALS3 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|10581652|gb|AAG20361.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167727873|emb|CAP14661.1| ribonuclease Z [Halobacterium salinarum R1]
Length = 308
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 106/245 (43%), Gaps = 39/245 (15%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VFITHGH DH+ GLP V + + P TI VP +
Sbjct: 35 FDAGEATQRQMMRYKTGFGVSDVFITHGHGDHVFGLPGLVHTWDFNDRTDPLTIHVPRGL 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY--- 212
+ D+E L + + G+V + + G +D VR F+T H S GY +
Sbjct: 95 RGDIEDL--VFSAGGDVGYPVRITEATPGAVVRSHDDYEVRAFETAHSTASVGYALVEDD 152
Query: 213 ----LLRKKLKKQYIHLKGKQIEKLKKSGVEITD-IILSPE-----------VAFTGDTT 256
R + ++ + + K VE+ D ++SPE + +TGDT
Sbjct: 153 RTGRFDRARAEELGVPVGPKFSTLHDGQPVELDDGTVVSPEQVVGDPRPGRTLVYTGDTR 212
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAK 316
+P + A A +LI +ATF +D + E A + GH+ E + ++ AK
Sbjct: 213 PH---DPVVSAAEDADLLIHDATFAND--ASERAAETGHSTAGE-----AADVATEAGAK 262
Query: 317 VVPLT 321
+ LT
Sbjct: 263 ALALT 267
>gi|15921184|ref|NP_376853.1| hypothetical protein ST0948 [Sulfolobus tokodaii str. 7]
gi|41017574|sp|Q973F1.1|RNZ_SULTO RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|342306331|dbj|BAK54420.1| ribonuclease Z [Sulfolobus tokodaii str. 7]
Length = 293
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 49/238 (20%)
Query: 104 FDIGR-CPTRAIQQNFVF-------ITHGHLDHIGGLPMYVASRGLYNLKPPTIFV-PPS 154
FD G R ++ N F ITH H DH+ GLP + + G+Y+ K + + P
Sbjct: 33 FDCGEGTQWRMMEHNLSFMKIKLIGITHMHGDHVLGLPGMIETMGMYSRKESLLLMGPKE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV---- 210
+KE +E +F+ N E+ + + YE N I + F+T H I SQGY+
Sbjct: 93 LKEFLEDIFKKTYFYPNFEIQ-------IIDKYEDEN-IKISTFETCHTIESQGYLFEEK 144
Query: 211 --IYLLRKKLKKQYIHLKGKQIEKLKKSG--VEITDIILSPE----------VAFTGDTT 256
+ + KL+K+ I K +I ++ K G VEI +L PE +A+TGDT
Sbjct: 145 DRLKIDIDKLRKEGI--KDWRIIRMLKEGKRVEINGKVLLPEDYLIVKKGIRIAYTGDTG 202
Query: 257 -SEFMLNP-RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSK 312
E ++N ++ D +LI ++TF+D+ + A ++GH++ S D LK K
Sbjct: 203 PCEKVINAVKDVD-----LLIHDSTFIDE----KEAYKYGHSN-SYDAAYVALKANVK 250
>gi|374339445|ref|YP_005096181.1| beta-lactamase superfamily metal-dependent hydrolase [Marinitoga
piezophila KA3]
gi|372100979|gb|AEX84883.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Marinitoga piezophila KA3]
Length = 276
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 28/243 (11%)
Query: 91 HETCVIIPELKCAFDIGRCPTRAIQQNF-----VFITHGHLDHIGGLPMYVASRGLY--- 142
+ T V + FD+G + A+ +FI+H H+DHI GL ++ +R
Sbjct: 11 YTTWVYYKPDRLLFDVGEGISAALGNKIYSIEKIFISHSHVDHIAGLWGFINTRNNAMGS 70
Query: 143 NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHH 202
K TI+ P K E L I R + L+ + ++ G+ ++N+ ++ FKT H
Sbjct: 71 REKGLTIYYPKGSKNIEEYLNFIQRMNKYLRFKLEFITVEHGDIIPLKNNRYLKIFKTRH 130
Query: 203 V--IPSQGYVIYLLRKKLKKQYIHLKGKQIEKL-KKSGVE-ITDIILSPEVAFTGDTTSE 258
S G+ I RK+LK +Y +L G +I++L K G E I + V +GD+
Sbjct: 131 TPGEKSVGFQILENRKRLKSEYQNLSGNEIKELISKMGKENILEKYTKKLVTISGDSL-- 188
Query: 259 FMLNPRNADALR-AKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKV 317
P + D + + IL+ E TF+ + + + HT L E + KL +++ K
Sbjct: 189 ----PVSPDIIEDSDILVHECTFIRE----KDRKLRNHTSLDE-----IKKLLTQIKPKK 235
Query: 318 VPL 320
V L
Sbjct: 236 VIL 238
>gi|456391862|gb|EMF57220.1| hypothetical protein SBD_1381 [Streptomyces bottropensis ATCC
25435]
Length = 344
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 105/245 (42%), Gaps = 36/245 (14%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
G T+ G S +T +PEL+C+ D G R ++ V +TH HLDH L Y+A+R
Sbjct: 48 GLTLTGYSRANDKTFFHLPELRCSLDAGLAEGRQVET--VLLTHTHLDHSKDLD-YLAAR 104
Query: 140 G----LYNLKPPTIFVPPSIKEDVE----KLFEIHRSLGNVELNLDLVALDVGETYEM-- 189
+Y + ++ E F+ R+ L + G + +
Sbjct: 105 DAGVDIYLPAAAEPYAAAYLRASSELNHGAGFDPSRAPA-----CRLHGVRAGAEFSVGR 159
Query: 190 RNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------------GKQIEKLKKSG 237
R + VR + H +P GY + LK +Y LK G+ I + +K G
Sbjct: 160 RGEYAVRVVECLHKVPCVGYCFAEKKTVLKPEYEELKASMVAAGRAAEFGRIIAERRKEG 219
Query: 238 VEITDI-ILSPEVAFTGDTTSE-FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
D I P AF GDT ++ F NP D ++ITE T+LDD + A+Q GH
Sbjct: 220 PGTVDEEIRRPAFAFLGDTHADVFARNPWLFDY---PVIITECTYLDD-GQLTRARQVGH 275
Query: 296 THLSE 300
T SE
Sbjct: 276 TVWSE 280
>gi|284038686|ref|YP_003388616.1| hypothetical protein Slin_3827 [Spirosoma linguale DSM 74]
gi|283817979|gb|ADB39817.1| conserved hypothetical protein [Spirosoma linguale DSM 74]
Length = 292
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 41/243 (16%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGR--CPT---RAIQQNFVFITHGHLDHIGGL---P 133
TI G S T + EL+ D G PT ++ + + +F++H DH+ GL
Sbjct: 4 TITGYSTALFSTWYFVEELRLLLDAGDGIAPTLLQKSRKIDHIFLSHADRDHVTGLLRLN 63
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFE------IHRSLGNVELNLDLVALDVGETY 187
A G + PT S E K F+ + LG+ +
Sbjct: 64 ELNARDGFPAVYYPTDAGSISALETFSKQFDERVKKTVWHPLGD------------QQQV 111
Query: 188 EMRNDIVVRPFKTHHVIPSQ-------GYVIYLLRKKLKKQYIHLKGKQIEKLKKS-GVE 239
++R D+ V+ + +HV+ +Q GY IY + KLK ++ L G+ + +L ++ G E
Sbjct: 112 QLRKDLFVQSARNNHVVKAQLHEVKSLGYQIYQTKNKLKSDFVDLSGEALRQLAETLGRE 171
Query: 240 -ITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDD-EMSIEHAQQHGHTH 297
+TD + + +A++GDT +E N +ILI EATFL E++ ++ H+
Sbjct: 172 SLTDEVRTNLLAYSGDTPAENFDQWNN-----TQILIHEATFLTRAELATLETNRNQHST 226
Query: 298 LSE 300
L E
Sbjct: 227 LEE 229
>gi|219114498|ref|XP_002176419.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402665|gb|EEC42655.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 357
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 102/255 (40%), Gaps = 41/255 (16%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+ T+ G S G T +PEL C +D G T + +FITH H DH+ LP Y+
Sbjct: 19 QALTLVGRSWAGDGTSCFVPELHCLWDCGAVVTPRT-PHAIFITHTHADHVQMLP-YLLH 76
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGN-------------------------VE 173
R +P +++P + + H+ L +
Sbjct: 77 RATVTDQPIPLYLPAAFVSRLRDYLHAHQHLVQSGGDDDDDNDTDYTDTDTKMSYSRPLY 136
Query: 174 LNLDLVALDVGETYEM-----RNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGK 228
LV + G+ + R+ ++VR HH I GY + + L+ +Y +G+
Sbjct: 137 ERCTLVPVQPGDELTVRIPARRDPLLVRVVACHHRIDCVGYSCWEQQTTLRPEY---RGQ 193
Query: 229 QIEKLKK--SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRA-KILITEATFLDDEM 285
+ L+K + + P F GDTT ++A+ L+ +++ E TFLD+
Sbjct: 194 DVAALRKQMAADALFRTTRRPLFCFLGDTTHRVWT--QHAELLQQHHVIVVECTFLDN-A 250
Query: 286 SIEHAQQHGHTHLSE 300
++ A H H E
Sbjct: 251 TVNKAVATRHMHWKE 265
>gi|455790689|gb|EMF42541.1| beta-lactamase domain protein [Leptospira interrogans serovar Lora
str. TE 1992]
gi|456986363|gb|EMG21950.1| beta-lactamase domain protein [Leptospira interrogans serovar
Copenhageni str. LT2050]
Length = 136
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 211 IYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALR 270
+Y RKKLKK++ + ++ + K +E++++ P ++F+GDT E++L + D
Sbjct: 1 MYQKRKKLKKEFQSISQNELNQALKEKIEVSELSEIPVISFSGDTKIEYVL--EHEDVAN 58
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSE 300
+ IL E T++D+E ++ A++ GHTHL E
Sbjct: 59 SSILFIECTYIDNERNVAQAREWGHTHLDE 88
>gi|374857157|dbj|BAL60010.1| ribonuclease Z [uncultured candidate division OP1 bacterium]
Length = 283
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 27/235 (11%)
Query: 101 KCAFDIGRCPTRAIQQNF-----VFITHGHLDHIGGLPMYVASR--GLYNL-KPPTIFVP 152
+ AFD G + + +F++HGH DHI GL + R G+ + KP TI+ P
Sbjct: 21 RLAFDAGEGISTILGNKVFAIERIFLSHGHADHITGLIGLINIRNSGMGDTEKPLTIYYP 80
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVG---ETYEMRNDIVVRPFKTHHVIP--SQ 207
+E + I ++ ++ L+ V L +G E + + + V FKT H S
Sbjct: 81 KENWRVLELISYIRKTNRRLKYPLEWVPLTIGDRVEVFSGQCNRYVEAFKTVHSDNEVSL 140
Query: 208 GYVIYLLRKKLKKQYIHLKGKQIEKLKKSGV--EITDIILSPEVAFTGDTTSEFMLNPRN 265
GY I R +L + Y L ++I KL ++G +IT+ L V + GD+ + L+P
Sbjct: 141 GYAIVEERTRLAEPYRDLPQEEILKLVRAGQRDQITERYLKKLVCYGGDSIA---LDP-- 195
Query: 266 ADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPL 320
AD IL+ + TFL + E + + H LSE + A L+++V ++ L
Sbjct: 196 ADVAGTDILLHDCTFLTE----EEREDYKHATLSEALEVA---LRAQVQEALIAL 243
>gi|157364451|ref|YP_001471218.1| beta-lactamase domain-containing protein [Thermotoga lettingae TMO]
gi|157315055|gb|ABV34154.1| beta-lactamase domain protein [Thermotoga lettingae TMO]
Length = 278
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 21/207 (10%)
Query: 91 HETCVIIPELKCAFDIGRCPTRAIQQN-----FVFITHGHLDHIGGLPMYVASRGLY--- 142
+ T V + FD G + + ++F+THGH+DHI GL V +R
Sbjct: 10 YSTWVYYAPERILFDAGEGVSLTMSNKIYAIRYIFLTHGHIDHISGLWTIVNTRNNSMGD 69
Query: 143 NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN----DIVVRPF 198
KP T++ P + + I ++ ++ + + + GE +R V PF
Sbjct: 70 REKPLTVYYPKGNTAIEDWINFIKQANNDLRFEFNHIPVSAGEKVFLRQAGNFARYVVPF 129
Query: 199 KTHHVIP--SQGYVIYLLRKKLKKQYIHLKGKQIEKLKK--SGVEITDIILSPEVAFTGD 254
K H S GY I R++LK++Y +L K+I +L K IT+ + +GD
Sbjct: 130 KVKHTSQDMSLGYSIIETRRRLKEEYRNLPEKEILELSKKLGSSNITEFYEKKILTISGD 189
Query: 255 TTSEFMLNPRNADALRAKILITEATFL 281
T F ++P NA ++IL+ E TFL
Sbjct: 190 T---FGIDPENARD--SEILLHECTFL 211
>gi|124003210|ref|ZP_01688060.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
gi|123991308|gb|EAY30739.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
Length = 304
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 119/259 (45%), Gaps = 45/259 (17%)
Query: 77 DLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQN-----FVFITHGHLDHIGG 131
+L TI G S T + EL FD G T + Q V I+H DH+ G
Sbjct: 12 NLMNLTITGYSTALFATWYFVEELGLLFDAGEGITANLLQKSRKIKHVLISHADRDHLTG 71
Query: 132 LPMYV---ASRGLYNLKPPTIFVPPSIKEDVEKLF-EIHRSLGNVELNLDLVALDVGETY 187
L + A GL+ P P++ + +K I ++ + + +A+
Sbjct: 72 LLQFNQLNARSGLHIHYPADCGSFPALADFCQKFDPHIQGAIWHPTTSQSRIAI------ 125
Query: 188 EMRNDIVVRPFKTHHVIPSQG------YVIYLLRKKLKKQYIHLKGKQIEKLK-KSGVE- 239
++D VV P + HV ++G Y + +++KLK + +L G +I+K+K + G+E
Sbjct: 126 --KDDFVVEPVQNGHVKAAEGVTKSLSYKVMQIKRKLKPELANLSGLEIKKIKDEKGIEA 183
Query: 240 ITDIILSPEVAFTGDTTSEFMLNPRNADALR---AKILITEATFLDDEMSIEHAQQHGHT 296
T+ I + ++++GDT E D R +KILI EATF+ D+++ +H H+
Sbjct: 184 TTNEIRTNVISYSGDTPVE--------DYERFNHSKILIHEATFI-DQVANNKENRHPHS 234
Query: 297 HLSE--------DIRQAVL 307
+L E D+ Q +L
Sbjct: 235 YLEEVIEMVASIDVEQLIL 253
>gi|330834309|ref|YP_004409037.1| ribonuclease Z [Metallosphaera cuprina Ar-4]
gi|329566448|gb|AEB94553.1| ribonuclease Z [Metallosphaera cuprina Ar-4]
Length = 291
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 34/205 (16%)
Query: 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV-PPSIKEDVEKLFEIHRSLGNV 172
++ N + ITH H DH+ GLP + + G+Y+ K + P S+KE ++ FE +
Sbjct: 51 MRVNLIAITHLHADHVLGLPSLIQTMGMYDRKEKLYLMGPESLKEFLKVSFE--HTYFRP 108
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV------IYLLRKKLKKQYI--- 223
++ V+ TYE + + VRPFKT HV+PSQG++ I L ++LK++ I
Sbjct: 109 GFPIEFVS-----TYEDKK-VRVRPFKTCHVVPSQGFLVEEIDSINLDVERLKREGITDW 162
Query: 224 ----HLKGKQIEKLKKSGVEITDIIL---SPEVAFTGDTT-SEFMLNPRNADALRAKILI 275
LKG + K+ + ++ D ++ +A+TGDT + ++N A +L+
Sbjct: 163 RVMRELKGGREVKVGERTLKSEDYLVVKRGVRLAYTGDTRPCDSVINS----AKGVDLLL 218
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSE 300
++TF D I+ A ++GH+ SE
Sbjct: 219 HDSTFED---GID-ASEYGHSTSSE 239
>gi|383787054|ref|YP_005471623.1| beta-lactamase superfamily metal-dependent hydrolase
[Fervidobacterium pennivorans DSM 9078]
gi|383109901|gb|AFG35504.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Fervidobacterium pennivorans DSM 9078]
Length = 278
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 18/178 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASR--GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL-- 174
VF+THGH+DHI GL + +R + + + P PS + +E + R N EL
Sbjct: 44 VFLTHGHVDHIAGLWSIINTRNNAMGDREKPLTVYYPSGNKGIELYADFLRK-ANSELRF 102
Query: 175 NLDLVALDVGETYEMRNDIV----VRPFKTHHVIPSQ--GYVIYLLRKKLKKQYIHLKGK 228
LD V L GE +RN ++PF H GY + +R++LK++Y +L +
Sbjct: 103 KLDFVPLKDGEKVFLRNSTTTNRYIKPFSVVHTYSETAFGYHLIEVRRRLKEEYRNLPKE 162
Query: 229 QIEKLKKS-GVE-ITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDE 284
+I +L KS G E +T+ + +GDT + + D +IL E TFL E
Sbjct: 163 EITRLVKSYGSESVTETYEKKILTISGDT-----ILLKKEDVADTEILFHECTFLKKE 215
>gi|354609683|ref|ZP_09027639.1| Ribonuclease Z [Halobacterium sp. DL1]
gi|353194503|gb|EHB60005.1| Ribonuclease Z [Halobacterium sp. DL1]
Length = 309
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 99/228 (43%), Gaps = 42/228 (18%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF+TH H DH+ GLP V + + + P TI VP +
Sbjct: 35 FDAGEATQRQMMRYGTGFDVSDVFVTHVHGDHVLGLPGLVQTWDFNDRQEPLTIHVPRGV 94
Query: 156 KEDVEKL-FEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
VE+L F I G+V + + + GE R + VR F+T H S GY +
Sbjct: 95 GRSVEQLVFAIG---GDVGYPVSVEEVGPGEVAVDREEFQVRTFQTDHRTASVGYALVED 151
Query: 215 RKK--------------LKKQYIHL-KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
+K + ++ HL G+ +E + V ++ P + +TGDT
Sbjct: 152 DRKGRFDRERAEELGVPVGPKFSHLHDGEAVELDDGTVVRPEQVVGDPRPGRTLVYTGDT 211
Query: 256 TSEFMLNPRN---ADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
P + A A A +LI +ATF DD + E A Q GH+ E
Sbjct: 212 ------RPHDAVVAAAEGADLLIHDATFADD--AAERAAQTGHSTAGE 251
>gi|222100685|ref|YP_002535253.1| RNAse Z [Thermotoga neapolitana DSM 4359]
gi|221573075|gb|ACM23887.1| RNAse Z [Thermotoga neapolitana DSM 4359]
Length = 280
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 21/217 (9%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGR-----CPTRAIQQNFVFITHGHLDHIGGLPMYV 136
I G S T + + FD G ++ +VF+THGH+DHI GL V
Sbjct: 2 NIIGFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVV 61
Query: 137 ASR--GLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-- 191
R G+ + KP +F P + E I ++ + + ++ L+ G+ +R+
Sbjct: 62 NIRNNGMGDREKPLDVFYPKGNRAVEEYTSFIKKANPELRFSFNVHPLEEGDRVFLRDAG 121
Query: 192 --DIVVRPFKTHHVIP--SQGYVIYLLRKKLKKQYIHLKGKQIEKL-KKSGVE-ITDIIL 245
V+PF+T HV S GY I+ +R+KLK+++ L K I +L K+ G + +T
Sbjct: 122 GFKRYVQPFRTKHVATEVSFGYHIFEVRRKLKEEFQGLDSKVIARLVKEKGRDFVTREYH 181
Query: 246 SPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLD 282
+ +GD+ + L+P + ++LI E TFLD
Sbjct: 182 KKILTISGDSLA---LDPEEVEG--TELLIHECTFLD 213
>gi|329930824|ref|ZP_08284223.1| ribonuclease Z [Paenibacillus sp. HGF5]
gi|328934526|gb|EGG31031.1| ribonuclease Z [Paenibacillus sp. HGF5]
Length = 308
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 26/208 (12%)
Query: 106 IGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFE 164
I + P + + VFITH H DH+ GLP ++SRG + P TI+ PP IK +E
Sbjct: 46 ILKSPLKLSKLEKVFITHMHGDHVFGLPGLLSSRGAQGVTSPLTIYGPPGIKVFIETTLS 105
Query: 165 IHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKK 217
I +S V ++++ G +E N +V K H S GY + L K+
Sbjct: 106 ISQS--RVPYTMEVIEHTGGVLFEDDN-FLVESAKLDHRAESYGYRVVEKDLPGSLDLKR 162
Query: 218 LKKQ-------YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRN 265
L Y LK G+ +E + +D++L+P+ V GDT +
Sbjct: 163 LADYGLKPGPLYGKLKRGESVELGDGRWIHASDVLLTPKKGRVVTILGDTRPCAGVEALA 222
Query: 266 ADALRAKILITEATFLDDEMSIEHAQQH 293
D A +L+ EATF++D + H H
Sbjct: 223 KD---ADLLVHEATFMEDLAELAHEYYH 247
>gi|374633802|ref|ZP_09706167.1| ribonuclease Z [Metallosphaera yellowstonensis MK1]
gi|373523590|gb|EHP68510.1| ribonuclease Z [Metallosphaera yellowstonensis MK1]
Length = 292
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 42/201 (20%)
Query: 118 FVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNL 176
V ITH H DH+ GLP + + +Y K + PP IKE +E+ FE+ + + L
Sbjct: 55 LVAITHLHADHVLGLPPLIQTMSMYGRKEKLYVMGPPGIKELLEESFEL--TFFKPDFPL 112
Query: 177 DLV-ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQ 229
+ V L +GE I V PF+T HV+PSQGY+I L +KL+++ I+ +
Sbjct: 113 EFVDELTLGE-------IHVTPFRTCHVVPSQGYLIQERDSSNLDVEKLRREGIN--DWR 163
Query: 230 IEKLKKSGVEI--TDIILSPE----------VAFTGDT--TSEFMLNPRNADALRAKILI 275
I + K G E+ L PE +A+TGDT +E + R D +L+
Sbjct: 164 IMRTLKEGKEVHWEGRTLRPEDYLIKRRGLRIAYTGDTRPCNEVIRAVRGVD-----LLL 218
Query: 276 TEATFLDDEMSIEHAQQHGHT 296
++TF E + +A ++GH+
Sbjct: 219 HDSTF---EAGV-NAGEYGHS 235
>gi|389843823|ref|YP_006345903.1| beta-lactamase superfamily metal-dependent hydrolase [Mesotoga
prima MesG1.Ag.4.2]
gi|387858569|gb|AFK06660.1| metal-dependent hydrolase, beta-lactamase superfamily III [Mesotoga
prima MesG1.Ag.4.2]
Length = 283
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 95/209 (45%), Gaps = 25/209 (11%)
Query: 91 HETCVIIPELKCAFDIGRCPTRAIQQNF-----VFITHGHLDHIGGLPMYVASR----GL 141
+ T ++ + FD+G + + + +F+THGH+DHI GL + +R G
Sbjct: 11 YSTWILYRPERVLFDVGEGISTVLGNSVYAIKDIFLTHGHVDHISGLWGLINTRNTAMGD 70
Query: 142 YNLKPPTIFVPPSIKEDVEKLFEIHRSLG-NVELNLDLVALDVGETYEMRNDIVVR---- 196
N + F PS +E + + + N+ L L+VG+ +R R
Sbjct: 71 RNKQLRINF--PSGNRAIEAYLDFIIGMNPRLRYNMILNPLNVGDEVYLRTAGSFRRHVT 128
Query: 197 PFKTHHVIP--SQGYVIYLLRKKLKKQYIHLKGKQIEK-LKKSGVE-ITDIILSPEVAFT 252
PFK H I S GY +Y R+KLK Y L K+I +K+ G E ITD L V +
Sbjct: 129 PFKVKHTIGEISYGYHVYEERRKLKDIYGGLPSKEIASVVKEKGREAITDTYLQKIVTIS 188
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFL 281
GDT F L P ++ L+ E TFL
Sbjct: 189 GDT---FALPPEVIS--NSETLLHECTFL 212
>gi|261406217|ref|YP_003242458.1| ribonuclease Z [Paenibacillus sp. Y412MC10]
gi|261282680|gb|ACX64651.1| ribonuclease Z [Paenibacillus sp. Y412MC10]
Length = 309
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 26/208 (12%)
Query: 106 IGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFE 164
I + P + + VFITH H DH+ GLP ++SRG + P TI+ PP IK +E
Sbjct: 46 ILKSPLKLSKLEKVFITHMHGDHVFGLPGLLSSRGAQGVTSPLTIYGPPGIKVFIETTLS 105
Query: 165 IHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKK 217
I +S V ++++ G +E N +V K H S GY + L K+
Sbjct: 106 ISQS--RVPYTMEVIEHTGGVLFEDDN-FLVESAKLDHRAESYGYRVVEKDLPGSLDLKR 162
Query: 218 LKKQ-------YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRN 265
L Y LK G+ +E + +D++L+P+ V GDT +
Sbjct: 163 LADYGLKPGPLYGKLKRGESVELGDGRWIHASDVLLTPKKGRVVTILGDTRPCAGVEALA 222
Query: 266 ADALRAKILITEATFLDDEMSIEHAQQH 293
D A +L+ EATF++D + H H
Sbjct: 223 KD---ADLLVHEATFMEDLSELAHEYYH 247
>gi|256419268|ref|YP_003119921.1| hypothetical protein Cpin_0220 [Chitinophaga pinensis DSM 2588]
gi|256034176|gb|ACU57720.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588]
Length = 292
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 38/243 (15%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQ-----NFVFITHGHLDHIGGLPMY- 135
TI S + I EL D G A+ Q FI+H DH+ GL +
Sbjct: 4 TITAYSTALFSSWYFIEELGILLDAGDGMISALLQKSRKITHAFISHADRDHLTGLLQFN 63
Query: 136 -VASRGLYNLKPPTIFVP------PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYE 188
+ +R Y P I P P++ E + F+ H + G V + G+
Sbjct: 64 QLNAREGY----PVICYPRDSRSFPAMHEFFAR-FDPH-TTGTV-----WQPVTAGDEIR 112
Query: 189 MRNDIVVRPFKTHHV-IP-----SQGYVIYLLRKKLKKQYIHLKGKQIEKLK-KSGVEIT 241
+++DI+V P + HV +P S GY IY ++KL+ + L G++I K+ + G E T
Sbjct: 113 VKDDILVIPVRNEHVPVPPAITRSLGYKIYQTKRKLRPELAGLSGEEIRKIGIEKGKEAT 172
Query: 242 DIILSPEV-AFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIE-HAQQHGHTHLS 299
+ + + +++GDT + + + KILI EATFL+ E I+ HA ++ H+ L
Sbjct: 173 TMEVRTNILSYSGDTPVDDLHKWDD-----TKILIHEATFLEREEEIKVHAHKNKHSRLD 227
Query: 300 EDI 302
E I
Sbjct: 228 EVI 230
>gi|269860949|ref|XP_002650191.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
gi|220066365|gb|EED43849.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
Length = 501
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 44/177 (24%)
Query: 117 NFVFITHGHLDHIGGLPMYVAS---RGLYNLKPPTIFVPPSIKEDVEKLFE----IHRSL 169
+ + I+H H+DH G LP +V + GL + PT P + ED +K+FE + + L
Sbjct: 59 DIIVISHFHIDHCGSLPYFVETTQFNGLIFMTHPTKAALPIVLEDCKKIFENKNQMEKPL 118
Query: 170 GNVE-LNLDL---VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
E +N L +AL++ ETYE+ + ++RP+ HVI G ++ +R
Sbjct: 119 YTTEQINNCLSKVIALNMEETYEIEQEFIIRPYYAGHVI---GAAMFFVR---------- 165
Query: 226 KGKQIEKLKKSGVEITDIILSPEVAFTGD--TTSEFMLNPRNADALRAKILITEATF 280
L V +TGD T + L D L +LITE+T+
Sbjct: 166 ------------------YLDETVVYTGDFSTIPDRYLRAATIDCLYPDLLITESTY 204
>gi|307353806|ref|YP_003894857.1| ribonuclease Z [Methanoplanus petrolearius DSM 11571]
gi|307157039|gb|ADN36419.1| ribonuclease Z [Methanoplanus petrolearius DSM 11571]
Length = 308
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 106/229 (46%), Gaps = 43/229 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DH GLP V + K P ++ P + E V + I R+ N+ +
Sbjct: 55 VFITHWHADHYLGLPGLVQTMSFMGRKEPLYVYGPRWVSEFVRSVISISRN--NLGFEMI 112
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL---KKQYIHL--------- 225
V L+ G ++ + +R F T H +PS GY++ + +++ I L
Sbjct: 113 PVELNHG-SFVPFSGYTIRAFSTDHGMPSLGYILCEDERPGRFDREKAISLGISPGPLFG 171
Query: 226 ---KGKQIEKLKKSGVEIT----DIILSP----EVAFTGDT---TSEFMLNPRNADALRA 271
+G +E ++K G IT D++ P +V +TGDT + E+M R+ D
Sbjct: 172 RLQRGSPVE-VEKDGRTITILPSDVMGEPRPGRKVVYTGDTRPKSGEWMDWARDCD---- 226
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPL 320
+LI +ATF D E E A + H+ + R A S++SAK + L
Sbjct: 227 -LLIHDATFDDSEQ--ERAMEVCHSTAGDAGRIA-----SEISAKSLAL 267
>gi|154249577|ref|YP_001410402.1| beta-lactamase domain-containing protein [Fervidobacterium nodosum
Rt17-B1]
gi|154153513|gb|ABS60745.1| beta-lactamase domain protein [Fervidobacterium nodosum Rt17-B1]
Length = 278
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 18/178 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY---NLKPPTIFVPPSIKEDVEKLFE-IHRSLGNVEL 174
+F+THGH+DHI GL + +R KP T++ P K +E E + R+ ++
Sbjct: 44 IFLTHGHVDHIAGLWSIINTRNNAMGDREKPLTVYYPEGNK-GIEFYAEFLKRANNDLRF 102
Query: 175 NLDLVALDVGETYEMRND----IVVRPFKTHHVIP--SQGYVIYLLRKKLKKQYIHLKGK 228
L V + GE +R V+PF+ +H + GY + +R++LK++Y L +
Sbjct: 103 ELIFVPVKKGENVFLRKSGSFIRYVQPFQVNHTYSEVAFGYHVIDVRRRLKEEYRDLPKE 162
Query: 229 QIEKLKK--SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDE 284
+I L K EIT+ + +GDT +L + D + +IL E TFL+ E
Sbjct: 163 EISNLAKKLGSEEITEAYEKKVLTISGDTV---LL--KKEDIMDTEILFHECTFLNRE 215
>gi|150021301|ref|YP_001306655.1| beta-lactamase domain-containing protein [Thermosipho melanesiensis
BI429]
gi|149793822|gb|ABR31270.1| beta-lactamase domain protein [Thermosipho melanesiensis BI429]
Length = 279
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 24/211 (11%)
Query: 91 HETCVIIPELKCAFDIGRCPTRAIQQNF-----VFITHGHLDHIGGLPMYVASRGLYNL- 144
+ T + + FD G + + VF+THGH+DHI GL V +R N
Sbjct: 11 YTTWIYYSPERILFDAGEAVSTLLNNKVYAIKHVFLTHGHVDHISGLWSLVNTRN--NAM 68
Query: 145 ----KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND---IVVRP 197
K I+ P + E L I + +++ L+ +++ GE +R+ V P
Sbjct: 69 GDREKALNIYYPKGNRSIEEYLKFIKKMNSDLKFQLNTFSVEEGEKIILRDKNPRKFVIP 128
Query: 198 FKTHHVI--PSQGYVIYLLRKKLKKQYIHLKGKQIEKL-KKSGVE-ITDIILSPEVAFTG 253
F+ H S GY ++ RKKLKK+++ L+ ++ L K+ G + +T+ I + +G
Sbjct: 129 FRVAHTYNEKSFGYHLFEERKKLKKEFLSLEQDKLALLAKEYGSDYLTENIEKKILTISG 188
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDE 284
DT ++L + D L +IL E TF E
Sbjct: 189 DT---YLL--KKEDVLDTEILFHECTFFRKE 214
>gi|336121415|ref|YP_004576190.1| ribonuclease Z [Methanothermococcus okinawensis IH1]
gi|334855936|gb|AEH06412.1| Ribonuclease Z [Methanothermococcus okinawensis IH1]
Length = 314
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 52/240 (21%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R + + N +FITH H DHI GLP + S G +P I+ PP
Sbjct: 33 FDCGEGAQRQMIYTDISPMKINNIFITHLHGDHILGLPGLLQSIGFNGRTEPINIYGPPE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN--DIVVRPFKTHHVIPSQGYVIY 212
KE +E + +I ++ N+ + L ++++ + + +H +P+ GY+
Sbjct: 93 TKETIENILKI--GYHSINFNIKVYELSTKNPMKIKDTEKYEIYSYPMNHSVPTVGYI-- 148
Query: 213 LLRKKLKKQYIHLK---------GKQIEKLK-------KSGVEI--TDIILSPE----VA 250
R+K K Q ++LK G +++LK K+G I D++L P+ +
Sbjct: 149 -FREKKKPQ-LNLKKAIELGVEVGPNLKRLKDGYPIKIKNGKIIYPEDVLLPPKKGICIG 206
Query: 251 FTGDTT-----SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
++GDTT EF+ +L ILI EATF D ++A + H+ + + + A
Sbjct: 207 YSGDTTPLEDFGEFL------KSLGCNILIHEATF--DSSKKDNALETMHSTIGDAVNIA 258
>gi|172056988|ref|YP_001813448.1| ribonuclease Z [Exiguobacterium sibiricum 255-15]
gi|254808638|sp|B1YLU8.1|RNZ_EXIS2 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|171989509|gb|ACB60431.1| ribonuclease Z [Exiguobacterium sibiricum 255-15]
Length = 301
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 39/232 (16%)
Query: 94 CVIIPELKCAFDIGRC--------PTRAIQQNFVFITHGHLDHIGGLPMYVASR-GLYNL 144
++ P++ FD G P + + + +FITH H DHI GLP ++++R L
Sbjct: 23 ALLHPKMTWLFDCGEATQHQMLHSPIKPRKVSTIFITHLHGDHIFGLPGFISTRAALEGT 82
Query: 145 KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-DIVVRPFKTHHV 203
TIF P IKE +E I + + LD++ ++ G+TYE I V + H
Sbjct: 83 TLLTIFGPKGIKEWLEATLRITGTY--LRYPLDVIEVEAGQTYEQEGFHIHVEALE--HR 138
Query: 204 IPSQGYVIYLLRKK-------LKK-------QYIHLKGKQIEKLKKSGVEITDIILSP-- 247
+ GY I +K LK+ Y +K K+ + + + TD + P
Sbjct: 139 FLAYGYRIEGQEEKGALHVEALKQLGVPSGPLYRQIKQKETFVFEGTEYQSTDFLGEPKP 198
Query: 248 --EVAFTGDTT-SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHT 296
++A GDT E L A + +L+ EATF D E +HA + GH+
Sbjct: 199 GIKLAVLGDTVPCEGSLRL----AEKVDVLVHEATFADSEQ--DHAGRFGHS 244
>gi|163754440|ref|ZP_02161562.1| hypothetical protein KAOT1_16133 [Kordia algicida OT-1]
gi|161325381|gb|EDP96708.1| hypothetical protein KAOT1_16133 [Kordia algicida OT-1]
Length = 288
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 37/239 (15%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGR--CPT---RAIQQNFVFITHGHLDHIGGLPMYV 136
TI G S + T I EL FD G C +A + FI+H DH+ GL +
Sbjct: 4 TIHGYSTALYATWYFIEELGILFDAGDGVCANLLGKAGKIKHAFISHADRDHLTGLLQF- 62
Query: 137 ASRGLYNLKPPTIFVPPS-----IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN 191
L+ PTI+ P D F+ H N + A+ + ++N
Sbjct: 63 --NQLFAGLKPTIYYPKDAGSFPFLNDFFTKFDPHNKGTNWQ------AIKDKAIFSVKN 114
Query: 192 DIVVRPFKTHHVI-----PSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILS 246
I V + HV+ S + ++ ++KLK ++++L +++ +KK E D L+
Sbjct: 115 SIQVEAIENGHVVQPGLLKSLSFKVFETKRKLKSKFVNLNKEELINIKK---EHGDHFLT 171
Query: 247 PE-----VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
E ++++GDT E N++ ILI EATF+ E + A ++ H+ L E
Sbjct: 172 NELKRNILSYSGDTPIEDYERYHNSE-----ILIHEATFMTKEETNTKAFKNKHSSLDE 225
>gi|21226408|ref|NP_632330.1| ribonuclease Z [Methanosarcina mazei Go1]
gi|452208920|ref|YP_007489034.1| Ribonuclease Z [Methanosarcina mazei Tuc01]
gi|41017564|sp|Q8Q032.1|RNZ_METMA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|20904666|gb|AAM30002.1| metal dependent hydrolases [Methanosarcina mazei Go1]
gi|452098822|gb|AGF95762.1| Ribonuclease Z [Methanosarcina mazei Tuc01]
Length = 305
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 113/254 (44%), Gaps = 46/254 (18%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R T + + +F++H H DH G+P + + K P TI+ P KE E+
Sbjct: 46 RAKTGMMSLSSIFVSHFHADHFLGIPGLIQTMSFLGRKEPLTIYGPEGTKE----FTEVF 101
Query: 167 RSLGNVELNLDL--VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKK 217
+ LG L ++ V L G+ E +N VVR KT H PS GY + R+K
Sbjct: 102 KVLGYCNLKYEVRGVELSPGDIVEGKN-YVVRALKTEHSTPSLGYSLIENPRPGRFNREK 160
Query: 218 LKKQYIHLKGKQIEKLKKSG-VEITDIILSPE-----------VAFTGDTT-SEFMLNP- 263
+ + L G KL+K VE+ ++ PE V ++GDT E +L
Sbjct: 161 AVELGV-LPGPLFAKLQKGNPVEVNGKLVKPEEVVGAPRPGRTVVYSGDTRPCEAVLEAS 219
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQAVLK-LQSKVS 314
R+AD +LI + +F DEM+ A++ H+ E +RQ VL + S+ +
Sbjct: 220 RDAD-----VLIHDGSFA-DEMA-GWAEESMHSTAGEVASLAKEAGVRQLVLTHISSRYT 272
Query: 315 AKVVPLTEGFKSVY 328
V P+ + V+
Sbjct: 273 DDVGPILNDSRKVF 286
>gi|340354558|ref|ZP_08677261.1| ribonuclease Z [Sporosarcina newyorkensis 2681]
gi|339623227|gb|EGQ27731.1| ribonuclease Z [Sporosarcina newyorkensis 2681]
Length = 315
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 47/233 (20%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR + P I+ P +KE ++ ++I + ELN+
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFLGGEAPVDIYGPAGLKEWLQHTYQITGTHLPYELNIH 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
VA G +E + V + HV+ S GY I LL + +Q + KG +
Sbjct: 119 EVA--DGLIFE-SDQFKVYAMEVQHVVKSYGYRIEQKDLPGTLLIDRAIEQGVP-KGPLL 174
Query: 231 EKLKKSGVEITDIIL-SPEVAFTGDTTSE----FMLN--------------PRNADALRA 271
++LK E DI L + E F+ D TSE F++ RNAD
Sbjct: 175 QRLK----EGQDIELDNGETVFSRDVTSERKKGFIITVIGDTSYCQSSIELARNAD---- 226
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHL---SEDIRQAVLK--LQSKVSAKVVP 319
ILI EATF D+ + A++ GH+ + ++ ++A +K + + +SA+ +P
Sbjct: 227 -ILIHEATFTDE--YAKGAREFGHSTIVDAAQIAKEAHVKNLIVNHISARFMP 276
>gi|15897910|ref|NP_342515.1| hypothetical protein SSO1043 [Sulfolobus solfataricus P2]
gi|284173568|ref|ZP_06387537.1| hypothetical protein Ssol98_02780 [Sulfolobus solfataricus 98/2]
gi|384434465|ref|YP_005643823.1| ribonuclease Z [Sulfolobus solfataricus 98/2]
gi|41017578|sp|Q97Z88.1|RNZ_SULSO RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|13814227|gb|AAK41305.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261602619|gb|ACX92222.1| ribonuclease Z [Sulfolobus solfataricus 98/2]
Length = 291
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 106/220 (48%), Gaps = 41/220 (18%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
I+H H DH+ GL +AS GL + K I P +K+ + FE + N ++ +
Sbjct: 59 ISHMHGDHVFGLLGVIASMGLLDRKETLYILGPRKLKDFLYTSFEYSKF--NPSFKIEFI 116
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQIEKL 233
+ Y N I + FKT H I SQGY+I + +KL+K+ I + I KL
Sbjct: 117 -----DNYNDEN-ITISTFKTCHTIESQGYLIMEKDRVKIDEEKLEKEKIR-DWRVIRKL 169
Query: 234 KKSG-VEITDIILSPE----------VAFTGDTTSEFMLNPRNADALRA-KILITEATFL 281
K+ VE +L PE VA+TGDT M D+++ ILI ++TFL
Sbjct: 170 KEGKTVEYNGKLLKPEDYLVIKRGSKVAYTGDT----MPCQSVVDSVKGVDILIHDSTFL 225
Query: 282 DDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
D+ A +GH+++++ + A+ + S K++ LT
Sbjct: 226 DE----PSAYTYGHSNVTDAAKIAL-----EASVKLLALT 256
>gi|282165506|ref|YP_003357891.1| ribonuclease Z [Methanocella paludicola SANAE]
gi|282157820|dbj|BAI62908.1| ribonuclease Z [Methanocella paludicola SANAE]
Length = 304
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 114/253 (45%), Gaps = 46/253 (18%)
Query: 109 CPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHR 167
C + + +F+TH H DH G+P + + G P I+ P ++E +I
Sbjct: 47 CRSGFMDVGSIFLTHFHADHTLGIPGLIQTMGFQGRTEPLHIYGPKFVRE----YCDILN 102
Query: 168 SLGNVELNLDLVALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIY---LLRKKLKKQY 222
SLG ++ D+VA ++ G+ E RN V F+T H +P GY + L + +++
Sbjct: 103 SLGYLKPAFDVVAHELRHGDVVE-RNGYKVEAFRTFHSVPGLGYALMEDARLGRFDRQRA 161
Query: 223 IHL------------KGKQIEKLKKSGVEITDIILSP----EVAFTGDT--TSEFMLNPR 264
+ L +G+ +E +K S ++ +D++ P + +TGDT + F+ +
Sbjct: 162 LELGVPEGPLFGRLHRGEDVE-VKGSIIKSSDVVGEPRPGRRIVYTGDTAPSQAFLPVLK 220
Query: 265 NADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLK---------LQSKVSA 315
AD + I+EATF D+ + + A + H+ + R A + S+ S
Sbjct: 221 GAD-----LWISEATFADE--ASDKAAETLHSSSGDVARLAATAGVQRLILTHISSRYSE 273
Query: 316 KVVPLTEGFKSVY 328
+ PL E + +
Sbjct: 274 DITPLLEDARKYF 286
>gi|226484716|emb|CAX74267.1| Nuclear ribonuclease Z [Schistosoma japonicum]
Length = 125
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 81 YTIEGVSIGGHETCVIIPELK--CAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+ I G S+ G+ETCV + + FDIG P + +++FI+HGH DHIG + ++
Sbjct: 9 FEIFGWSVAGNETCVAVRKNGKVFGFDIGFSPRPLVLADYIFISHGHADHIGAITQHMKK 68
Query: 139 RGLYNLKPPTIFVP 152
R L L+ T F+P
Sbjct: 69 RALNGLRGATYFMP 82
>gi|392967329|ref|ZP_10332747.1| hypothetical protein BN8_04000 [Fibrisoma limi BUZ 3]
gi|387844126|emb|CCH54795.1| hypothetical protein BN8_04000 [Fibrisoma limi BUZ 3]
Length = 292
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 30/221 (13%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQ-----NFVFITHGHLDHIGGL---P 133
TI G S T I EL+ FD G ++ Q + +F++H DH+ GL
Sbjct: 4 TITGYSTALFATWYFIEELRLLFDAGDGVAASLLQKSRKIDHIFLSHADRDHVTGLLRLN 63
Query: 134 MYVASRGLYNLKPPTIFVPP-SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND 192
A GL P +F P S+ ++F + L + E E++ND
Sbjct: 64 ELNAREGL-----PQLFFPADSMSFPALEVFS--KQLDERVKQTRWTPIRADEQIEIQND 116
Query: 193 IVVRPFKTHHVIPSQ-------GYVIYLLRKKLKKQYIHLKGKQIEKLKKS-GVE-ITDI 243
V + +H + +Q GY +Y +R KLK + L G+ + +L G E +T
Sbjct: 117 TFVESVRNNHAVRAQPHEIKSLGYQVYQVRHKLKPDLLSLPGETLRQLATDIGKENMTYE 176
Query: 244 ILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDE 284
+ + +A++GDT E N ILI EATFL +E
Sbjct: 177 VRTNLLAYSGDTPIENFDRWDN-----TGILIHEATFLTNE 212
>gi|354582803|ref|ZP_09001704.1| ribonuclease Z [Paenibacillus lactis 154]
gi|353199095|gb|EHB64561.1| ribonuclease Z [Paenibacillus lactis 154]
Length = 309
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 26/206 (12%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
+ P + + VFITH H DH+ GLP ++SRG + P TI+ PP IK +E I
Sbjct: 48 KSPLKLSKLEKVFITHMHGDHVFGLPGLLSSRGAQGVTAPLTIYGPPGIKSFIETSLSIS 107
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLK 219
+S V ++++ G +E + V H S GY + L K+L+
Sbjct: 108 QS--RVPYTMEIIEHTGGIIFEDKY-FRVEAAGLDHRADSYGYRVVEKDLPGSLDPKRLE 164
Query: 220 K-------QYIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNAD 267
QY LK G+ +E + D++L+P+ V GDT + D
Sbjct: 165 AYGLKPGPQYGKLKRGESVELGDGRWIHPADVLLAPKKGRVVTILGDTRPCPGVEVLAKD 224
Query: 268 ALRAKILITEATFLDDEMSIEHAQQH 293
A IL+ EATF++D + H H
Sbjct: 225 ---ADILVHEATFMEDLAELAHEYYH 247
>gi|448735241|ref|ZP_21717458.1| ribonuclease Z [Halococcus salifodinae DSM 8989]
gi|445798854|gb|EMA49245.1| ribonuclease Z [Halococcus salifodinae DSM 8989]
Length = 307
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 102/250 (40%), Gaps = 49/250 (19%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF+TH H DH+ GLP + + + P I PP
Sbjct: 33 FDCGEGTQRQMMRFSTGFTVSHVFLTHLHGDHVLGLPGLCQTLDFNDREEPLAIHTPPGT 92
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
+ VE L + L + D G +N+ VR F T H S GY +
Sbjct: 93 RSTVENLVGVT----GARLGYPIRVSDAQPGGVVLRKNEYEVRAFATDHRTQSVGYALIE 148
Query: 214 LRKKLKKQYIHL------KGKQIEKLKKS-GVEI-TDIILSPE-----------VAFTGD 254
+K + H +G + +L + VE+ D ++ PE + +TGD
Sbjct: 149 DDRKGRFDREHAEELGVPEGPKFSRLHRGETVELDDDTVIEPEQVVGPPRPGRRIVYTGD 208
Query: 255 TTSEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQS 311
T P A A A +L+ EATF DD E A Q GH S I+ A +L +
Sbjct: 209 T------RPTGATVEAATDADLLVHEATFADDRA--ERAAQTGH---STAIQAA--ELAN 255
Query: 312 KVSAKVVPLT 321
+ AK + LT
Sbjct: 256 RAGAKRLALT 265
>gi|212710279|ref|ZP_03318407.1| hypothetical protein PROVALCAL_01338 [Providencia alcalifaciens DSM
30120]
gi|212687086|gb|EEB46614.1| hypothetical protein PROVALCAL_01338 [Providencia alcalifaciens DSM
30120]
Length = 305
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 36/202 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P T++ P +K+ VE + + S + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGTTDPLTLYGPKGLKQYVEIVLSVSDSF--MTYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+V ++ GE ++ ++VV ++ H + GY I L +KL++ I +G +
Sbjct: 117 IVEIEAGELFD-DGELVVTAYRLDHRVECYGYRIEEHPKPGALNVQKLEQDGIP-RGPWM 174
Query: 231 EKLKKS---------GVEITDIILSP----EVAFTGDT--TSEFMLNPRNADALRAKILI 275
+ LKK V D + P VA GDT T E +L +NA+ +++
Sbjct: 175 QALKKGEVIELEDGRSVNGADYLGEPVAGKVVAIFGDTTPTPEALLLAKNAN-----VMV 229
Query: 276 TEATFLDDEMSIE-HAQQHGHT 296
E T E+++E A +HGH+
Sbjct: 230 HETTL---EVALEVKANEHGHS 248
>gi|374602225|ref|ZP_09675219.1| Rnz [Paenibacillus dendritiformis C454]
gi|374392094|gb|EHQ63422.1| Rnz [Paenibacillus dendritiformis C454]
Length = 311
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 38/214 (17%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIH 166
R P + + F+FITH H DH+ GLP ++SR + P T+F P + E +E F +
Sbjct: 48 RSPLKLGKCEFIFITHLHGDHLFGLPGLLSSRAYQGGVDPLTVFGPAGLSEFMETAFRVS 107
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK--KLKKQYIH 224
+ ++ L L ++ GE + + V H +PS GY + L + KL+ + +
Sbjct: 108 DT--HLPYTLHLQEIEPGEIWS-DDSFRVTALPLDHRVPSYGYRVQELARPGKLRIEVLE 164
Query: 225 ----LKGKQIEKLKKSGVEIT--------------DIILSPEVAFTGDTTSEFMLNPRNA 266
G KLK+ G ++T + I VA GDT
Sbjct: 165 RMGIAPGPVYGKLKR-GEDVTLPDGRRIAAAAVLGEQIPGKTVAILGDTRP-------CE 216
Query: 267 DALR----AKILITEATFLDDEMSIEHAQQHGHT 296
+A+R A +L+ EATF++++ S +A ++GH+
Sbjct: 217 NAVRLAEGADVLVHEATFMENKRS--NAHEYGHS 248
>gi|448494708|ref|ZP_21609523.1| ribonuclease Z [Halorubrum californiensis DSM 19288]
gi|445688931|gb|ELZ41177.1| ribonuclease Z [Halorubrum californiensis DSM 19288]
Length = 309
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 109/262 (41%), Gaps = 45/262 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF++H H DH+ G+P + + G + P T+ PP
Sbjct: 35 FDCGEGTQREMMRSGTGFGVDRVFVSHLHGDHVLGIPGLIQTLGFNDRTDPLTVHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ + L +H + + + ++ GE ++ VR F+T H SQGYV+
Sbjct: 95 DDHLRDL--VHAVGHDPAFPVRIEPVEPGEVAYETDEYEVRAFETEHRTVSQGYVLAEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R K ++ + + +G+ +E + VE ++ P ++A+T DT
Sbjct: 153 RPGRFDRPKAEELGVPVGPKFGRLHEGESVEAEDGTVVEPEQVVGPPRPGRKLAYTADT- 211
Query: 257 SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-------RQAV 306
PR A A A +LI +ATF DD H + I R A+
Sbjct: 212 -----RPREATVEAAENADLLIHDATFADDMADRARDTAHSTGREAGSIADRADAKRLAL 266
Query: 307 LKLQSKVSAKVVPLTEGFKSVY 328
+ + S+ +A P+ + V+
Sbjct: 267 VHISSRYAADARPIRRDAREVF 288
>gi|194468447|ref|ZP_03074433.1| ribonuclease Z [Lactobacillus reuteri 100-23]
gi|194453300|gb|EDX42198.1| ribonuclease Z [Lactobacillus reuteri 100-23]
Length = 309
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 37/210 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR +P TI+ P IK V+ ++ S L+
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRYVQTSLQVSES----RLSYP 114
Query: 178 LVALDVGETYEMRND----IVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ----- 221
L +++ + E+ ND ++ R K H I GY I L +KL++Q
Sbjct: 115 LHFVEITDDGELFNDHGFRVIAR--KLDHKIACFGYRIEEADHPGELQVEKLREQKVPSG 172
Query: 222 --YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAK 272
Y LK GK++ ++ D I +P+ VA GDT T +L +NAD
Sbjct: 173 PIYGQLKAGKKVTLPDGRVLDGHDFIGTPQPGRIVAILGDTRQTKNAILLAQNAD----- 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
+L+ E+TF DE + H H + + +I
Sbjct: 228 VLVHESTFAKDETKMAHNYYHSTSKQAAEI 257
>gi|393201123|ref|YP_006462965.1| metal-dependent hydrolase [Solibacillus silvestris StLB046]
gi|327440454|dbj|BAK16819.1| metal-dependent hydrolase of the beta-lactamase superfamily III
[Solibacillus silvestris StLB046]
Length = 313
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 113/242 (46%), Gaps = 42/242 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR + TI+ P +++ +E+ ++ ++ ++ ++
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFLGGEDMLTIYGPAGLQQWIEQTLQLSKT--HLTYPIE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYI-------------- 223
V + G +E VR HV+P GY I +K ++ + +
Sbjct: 117 FVEVKDGIVFE-DEKFTVRALSLQHVVPCFGYRIE--QKPMQGELLIDKALALGVPKGPL 173
Query: 224 --HLKGKQIEKLKKSG-VEITDIILSPEVAFT----GDTTSEFMLNPRNADALRAKILIT 276
LK KL+ VE +D+ P+ FT GDT ++ N A A +++
Sbjct: 174 LGQLKAGHSVKLEDGTVVESSDVTSPPQPGFTVAILGDT--KYCENSIRL-AQNADVVVH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEDIR-----QAVLKLQSKVSAK-----VVPLTEGFKS 326
EATF D +IE A ++GH +E + QA L + +SA+ ++P E K+
Sbjct: 231 EATF--DHSTIELAGKYGHATNTEAAKIAKEAQARHLLLNHISARFLKHDLIPFLEEAKA 288
Query: 327 VY 328
++
Sbjct: 289 IF 290
>gi|406667570|ref|ZP_11075326.1| Ribonuclease Z [Bacillus isronensis B3W22]
gi|405384623|gb|EKB44066.1| Ribonuclease Z [Bacillus isronensis B3W22]
Length = 313
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 113/242 (46%), Gaps = 42/242 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR + TI+ P +++ +E+ ++ ++ ++ ++
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFLGGEDVLTIYGPAGLQQWIEQTLQLSKT--HLTYPIE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYI-------------- 223
V + G +E VR HV+P GY I +K ++ + +
Sbjct: 117 FVEVKDGIVFE-DEKFTVRALSLQHVVPCFGYRIE--QKPMQGELLIDKALALGVPKGPL 173
Query: 224 --HLKGKQIEKLKKSG-VEITDIILSPEVAFT----GDTTSEFMLNPRNADALRAKILIT 276
LK KL+ VE +D+ P+ FT GDT ++ N A A +++
Sbjct: 174 LGQLKAGHSVKLEDGTVVESSDVTSPPQPGFTVAILGDT--KYCENSIRL-AQNADVVVH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEDIR-----QAVLKLQSKVSAK-----VVPLTEGFKS 326
EATF D +IE A ++GH +E + QA L + +SA+ ++P E K+
Sbjct: 231 EATF--DHSTIELAGKYGHATNTEAAKIAKEAQARHLLLNHISARFLKHDLIPFLEEAKA 288
Query: 327 VY 328
++
Sbjct: 289 IF 290
>gi|315646598|ref|ZP_07899716.1| ribonuclease Z [Paenibacillus vortex V453]
gi|315278241|gb|EFU41561.1| ribonuclease Z [Paenibacillus vortex V453]
Length = 309
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 90/206 (43%), Gaps = 26/206 (12%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLK-PPTIFVPPSIKEDVEKLFEIH 166
+ P + + VFITH H DHI GLP ++SRG + P I+ PP IK +E I
Sbjct: 48 KSPLKLSKLEKVFITHMHGDHIFGLPGLLSSRGAQGVTLPLAIYGPPGIKSFIETTLNIS 107
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------------YLL 214
+S V ++++ G +E + V K H S GY I L
Sbjct: 108 QS--RVPYTMEIMEHTGGVLFE-DDSFRVEAAKLDHRAESYGYRIEEKDLPGSLDLKRLE 164
Query: 215 RKKLKKQYIHLKGKQIEKLKKSG---VEITDIILSPE----VAFTGDTTSEFMLNPRNAD 267
LK ++ K K+ E + G + +D++L+P+ V GDT + +
Sbjct: 165 AYGLKPGPLYGKLKRGESVDLGGGRWIHASDVLLTPKKGRVVTILGDTRPCPGVESLSKG 224
Query: 268 ALRAKILITEATFLDDEMSIEHAQQH 293
A +L+ EATF+DD + H H
Sbjct: 225 ---ADLLVHEATFMDDLTELAHEYYH 247
>gi|256081658|ref|XP_002577085.1| ribonuclease z chloroplast [Schistosoma mansoni]
gi|353232679|emb|CCD80034.1| putative ribonuclease z, chloroplast [Schistosoma mansoni]
Length = 190
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 49/181 (27%)
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL---GNVELNLDLVALDVGETYEMRNDIVV 195
R L NL+ T F+P + V+ + + ++ + + V ++ G YE+ +D V
Sbjct: 4 RALNNLRRATYFMPKHLVPHVKAICDAFTAMSEKADSDFVGTFVPVEPGNKYELSDDCV- 62
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
GY++Y SG E+ PE+A+ GD
Sbjct: 63 ------------GYLLY-------------------SRDPSGKEV------PEIAYLGD- 84
Query: 256 TSEFML----NPRNADALRAKILITEATFLDD-EMSIEHAQQHGHTHLSEDIRQAVLKLQ 310
S F + N D L +++LI EATFLD+ + IE A+ HGHTHL E IRQ L+
Sbjct: 85 -SRFTIIREANSLCPDLLSSRLLIMEATFLDNPDRKIESARSHGHTHLDE-IRQNASLLK 142
Query: 311 S 311
S
Sbjct: 143 S 143
>gi|297618954|ref|YP_003707059.1| ribonuclease Z [Methanococcus voltae A3]
gi|297377931|gb|ADI36086.1| ribonuclease Z [Methanococcus voltae A3]
Length = 336
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 106/246 (43%), Gaps = 58/246 (23%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R + N +FI+H H DHI GL + S L N K P IF PP
Sbjct: 33 FDCGENVQRQMMSTNVSPMKINNIFISHLHGDHILGLGGLLQSMALSNRKKPLKIFGPPK 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDV-----------GETYEMRNDIVVRPFKTHHV 203
I E VE + +I ++ ++++V L++ G YE + + T+H
Sbjct: 93 ITETVENILKI--GYHSISYDIEVVELELKPNKILSVNNSGNGYE------IYCYPTNHS 144
Query: 204 IPSQGYVIYLLR------KKLKKQYIHLKGKQIEKLK----------KSGVEITDIILSP 247
+PS Y+ L+ K+K I + G +++ LK ++G + I+
Sbjct: 145 VPSLAYIFKELKAPKMDMAKVKNLGIEI-GSKLKDLKDGKSVEIETFENGKSVKKTIIPQ 203
Query: 248 EV----------AFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTH 297
+V A++GDT + D L K+L+ EATF D +E+A + H+
Sbjct: 204 DVLVKNTEGVSFAYSGDTRPVYAFAMFLKD-LNCKVLVHEATF--DSSLLENALETMHST 260
Query: 298 LSEDIR 303
E ++
Sbjct: 261 FGEALK 266
>gi|423332828|ref|ZP_17310610.1| metal-dependent hydrolase [Lactobacillus reuteri ATCC 53608]
gi|337727946|emb|CCC03035.1| metal-dependent hydrolase [Lactobacillus reuteri ATCC 53608]
Length = 309
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 37/210 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR +P TI+ P IK V+ ++ S L+
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRYVQTSLQVSES----RLSYP 114
Query: 178 LVALDVGETYEMRND----IVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ----- 221
L +++ + E+ ND ++ R K H I GY I L +KL++Q
Sbjct: 115 LHFVEITDDGELFNDHGFRVIAR--KLDHKIACFGYRIEEADHPGELQVEKLREQKVPSG 172
Query: 222 --YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAK 272
Y LK GK + ++ D I +P+ VA GDT T +L +NAD
Sbjct: 173 PIYGQLKAGKTVTLPDGRVLDGHDFIGTPQPGRIVAILGDTRQTKNAILLAQNAD----- 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
+L+ E+TF DE + H H + + +I
Sbjct: 228 VLVHESTFAKDETKMAHNYYHSTSKQAAEI 257
>gi|407476796|ref|YP_006790673.1| ribonuclease Z [Exiguobacterium antarcticum B7]
gi|407060875|gb|AFS70065.1| Ribonuclease Z [Exiguobacterium antarcticum B7]
Length = 301
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 115/257 (44%), Gaps = 48/257 (18%)
Query: 98 PELKCAFDIGRC--------PTRAIQQNFVFITHGHLDHIGGLPMYVASR-GLYNLKPPT 148
P++ FD G P + + + +FITH H DHI GLP ++++R L T
Sbjct: 27 PKMTWLFDCGEATQHQMLHSPIKPRKVSTIFITHLHGDHIFGLPGFISTRAALEGTTRLT 86
Query: 149 IFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQG 208
I+ P ++E +E + + + LD++ ++ G+TY+ V H + + G
Sbjct: 87 IYGPKGLREWLEATLRVTGTY--LRYPLDIIEVEAGQTYQQEGFRVTVEALEHRFL-AYG 143
Query: 209 YVI-------YLLRKKLKKQYI-----HLKGKQIEKLKKSGVEI--TDIILSP----EVA 250
Y I LL + L++ I + + KQ GVE D + +P ++A
Sbjct: 144 YRIEGEEEKGALLVEALQELGIPSGPLYRRIKQDSMFVFDGVEYQSADFLGTPKPGVKLA 203
Query: 251 FTGDTTSEFMLNPRNADALR----AKILITEATFLDDEMSIEHAQQHGHT---HLSEDIR 303
GDT A ++R +L+ EATF D E +HA + GH+ +E R
Sbjct: 204 ILGDTIP-------CAGSIRLAQEVDVLVHEATFADSEE--DHAGRFGHSTARQAAEIAR 254
Query: 304 QAVLK--LQSKVSAKVV 318
QA K L + +SA+ V
Sbjct: 255 QAQAKKLLLTHISARYV 271
>gi|422020560|ref|ZP_16367098.1| ribonuclease Z [Providencia alcalifaciens Dmel2]
gi|414101197|gb|EKT62798.1| ribonuclease Z [Providencia alcalifaciens Dmel2]
Length = 305
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 40/212 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P T++ P +K+ VE + + S + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGTTDPLTLYGPKGLKQYVETVLSVSDSY--MTYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+V ++ G+ ++ +++V ++ H + GY I L +KL++ I +G +
Sbjct: 117 IVEIEAGKLFD-DGELIVTAYRLDHRVECYGYRIEEHPKPGALNVQKLEQDEIP-RGPWM 174
Query: 231 EKLKKS---------GVEITDIILSP----EVAFTGDT--TSEFMLNPRNADALRAKILI 275
+ LKK V D + P VA GDT T E +L +NA+ +++
Sbjct: 175 QALKKGEVIELEDGRSVNGADYLGEPVAGKVVAIFGDTTPTPEALLLAKNAN-----VMV 229
Query: 276 TEATFLDDEMSIE-HAQQHGHTHLSEDIRQAV 306
E T E+++E A +HGH+ RQA
Sbjct: 230 HETTL---EVALEVKANEHGHS----STRQAA 254
>gi|73669295|ref|YP_305310.1| ribonuclease Z [Methanosarcina barkeri str. Fusaro]
gi|72396457|gb|AAZ70730.1| RNAse Z [Methanosarcina barkeri str. Fusaro]
Length = 305
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 33/215 (15%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHR 167
R T + + +F++H H DH G+P + + K P + P E + E+ +
Sbjct: 46 RAKTGMMNLSSIFVSHFHADHFLGIPGLIQTMSFMGRKEPLLIYGP---EGTREFTELFK 102
Query: 168 SLGNVELNLDL--VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY---LLRKKLKKQY 222
+LG LN ++ + L G+ E R + V+R KT H I S GY + + +++
Sbjct: 103 ALGYFNLNYEVQGIQLKPGDVVE-RKEYVIRALKTEHSISSLGYALIENPRPGRFNREKA 161
Query: 223 IHLK---GKQIEKLKKSG-VEITDIILSPE-----------VAFTGDT--TSEFMLNPRN 265
I L G KL+K VE+ ++ PE V ++GDT + R+
Sbjct: 162 IELGIPPGPLFSKLQKGKTVEVNGKLVKPEDVMGALRPGRTVVYSGDTRPCEPILKASRD 221
Query: 266 ADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
AD +LI + +F DEM+ + A++ H+ E
Sbjct: 222 AD-----VLIHDGSFA-DEMA-DWAEESKHSTAGE 249
>gi|433542376|ref|ZP_20498803.1| ribonuclease Z [Brevibacillus agri BAB-2500]
gi|432186187|gb|ELK43661.1| ribonuclease Z [Brevibacillus agri BAB-2500]
Length = 301
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 102/243 (41%), Gaps = 50/243 (20%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP--TIFVPPSIKEDVEKLFEI 165
R P + Q + +FITH H DH+ GL +ASR L N + P ++ PP + + +I
Sbjct: 29 RSPMKISQLDKIFITHLHGDHLYGLIGLLASRSLRNGEAPPLALYGPPGLDRYFRAIMDI 88
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
S +++ LDL + G YE D++V K H +PS Y + L K ++
Sbjct: 89 --SPVHLQYPLDLCIVSEGVVYE-DEDVIVTCRKAKHRVPSFAYSV--LEKDKPGAFL-- 141
Query: 226 KGKQIEKLKKSGV-----------------------EITDIILSPE----VAFTGDTTSE 258
+E+ K +GV + D + +P+ + F+GDT
Sbjct: 142 ----VERAKAAGVPSGPLFGALKRGEQVMLPDGRVLDGKDFVGAPQPGRKIVFSGDTEP- 196
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVV 318
A A +L+ EAT+ D + E A + GH+ E +L + K +
Sbjct: 197 --CQSVEELAAGADLLVHEATYADRDK--ELAVRSGHSTAKE-----AAELAKRAGVKAL 247
Query: 319 PLT 321
LT
Sbjct: 248 CLT 250
>gi|148543891|ref|YP_001271261.1| ribonuclease Z [Lactobacillus reuteri DSM 20016]
gi|184153291|ref|YP_001841632.1| metal-dependent hydrolase [Lactobacillus reuteri JCM 1112]
gi|227364799|ref|ZP_03848847.1| ribonuclease Z [Lactobacillus reuteri MM2-3]
gi|325682576|ref|ZP_08162093.1| ribonuclease Z [Lactobacillus reuteri MM4-1A]
gi|166991481|sp|A5VJA0.1|RNZ_LACRD RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808644|sp|B2G6S0.1|RNZ_LACRJ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|148530925|gb|ABQ82924.1| RNAse Z [Lactobacillus reuteri DSM 20016]
gi|183224635|dbj|BAG25152.1| metal-dependent hydrolase [Lactobacillus reuteri JCM 1112]
gi|227070143|gb|EEI08518.1| ribonuclease Z [Lactobacillus reuteri MM2-3]
gi|324978415|gb|EGC15365.1| ribonuclease Z [Lactobacillus reuteri MM4-1A]
Length = 309
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 37/210 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR +P TI+ P IK V+ ++ S L+
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRYVQTSLQVSES----RLSYP 114
Query: 178 LVALDVGETYEMRND----IVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ----- 221
L +++ + E+ ND ++ R K H I GY I L +KL++Q
Sbjct: 115 LHFVEITDDGELFNDHGFRVIAR--KLDHKIACFGYRIEEADHPGELQVEKLREQKVPSG 172
Query: 222 --YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAK 272
Y LK GK + ++ D I +P+ +A GDT T +L +NAD
Sbjct: 173 PIYGQLKAGKTVTLPDGRVLDGHDFIGTPQPGRIIAILGDTRQTKNAILLAQNAD----- 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
+L+ E+TF DE + H H + + +I
Sbjct: 228 VLVHESTFAKDETKMAHNYYHSTSKQAAEI 257
>gi|399053459|ref|ZP_10742311.1| ribonuclease Z [Brevibacillus sp. CF112]
gi|398048824|gb|EJL41290.1| ribonuclease Z [Brevibacillus sp. CF112]
Length = 319
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 102/243 (41%), Gaps = 50/243 (20%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP--TIFVPPSIKEDVEKLFEI 165
R P + Q + +FITH H DH+ GL +ASR L N + P ++ PP + + +I
Sbjct: 47 RSPMKISQLDKIFITHLHGDHLYGLIGLLASRSLRNGEAPPLALYGPPGLDRYFRAIMDI 106
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
S +++ LDL + G YE D++V K H +PS Y + L K ++
Sbjct: 107 --SPVHLQYPLDLCIVSEGVVYE-DEDVIVTCRKAKHRVPSFAYSV--LEKDKPGAFL-- 159
Query: 226 KGKQIEKLKKSGV-----------------------EITDIILSPE----VAFTGDTTSE 258
+E+ K +GV + D + +P+ + F+GDT
Sbjct: 160 ----VERAKAAGVPSGPLFGALKRGEQVMLPDGRVLDGKDFVGAPQPGRKIVFSGDTEP- 214
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVV 318
A A +L+ EAT+ D + E A + GH+ E +L + K +
Sbjct: 215 --CQSVEELAAGADLLVHEATYADRDK--ELAVRSGHSTAKE-----AAELAKRAGVKAL 265
Query: 319 PLT 321
LT
Sbjct: 266 CLT 268
>gi|217077798|ref|YP_002335516.1| metallo-beta-lactamase superfamily [Thermosipho africanus TCF52B]
gi|419760398|ref|ZP_14286677.1| metallo-beta-lactamase superfamily protein [Thermosipho africanus
H17ap60334]
gi|217037653|gb|ACJ76175.1| metallo-beta-lactamase superfamily, putative [Thermosipho africanus
TCF52B]
gi|407514501|gb|EKF49316.1| metallo-beta-lactamase superfamily protein [Thermosipho africanus
H17ap60334]
Length = 279
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 19/178 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-----KPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
+F+THGH+DHI GL + +R N K I+ P K E L I + ++
Sbjct: 44 IFLTHGHVDHISGLWALINTRN--NAMGDREKELNIYYPIGNKGIEEYLRFIKKMNSDLR 101
Query: 174 LNLDLVALDVGETYEMRNDIVVRPFKTHHVI-----PSQGYVIYLLRKKLKKQYIHLKGK 228
NL++ L G+ +R + K V+ S GY +Y +RK+LKK++ L K
Sbjct: 102 FNLNVFPLKDGQIVYLREGNQPKYIKAFSVVHTYSEKSFGYHLYEVRKRLKKEFQSLSQK 161
Query: 229 QIEKL-KKSGVE-ITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDE 284
+I +L +K G + +++ + +GDT ++L + D IL E TF E
Sbjct: 162 EIAELSRKYGSDYVSEKFEKKILTVSGDT---YLL--KKEDVFDTDILFHECTFFKKE 214
>gi|295426307|ref|ZP_06818967.1| ribonuclease Z [Lactobacillus amylolyticus DSM 11664]
gi|295064046|gb|EFG54994.1| ribonuclease Z [Lactobacillus amylolyticus DSM 11664]
Length = 311
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 92/220 (41%), Gaps = 37/220 (16%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FDIG I + + FI+H H DHI GLP +A+R ++ P TI+ PP
Sbjct: 36 FDIGEATQHQILKTNIRLRKVTKIFISHNHGDHIFGLPGLLATRSFQGDVGPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
+++ V+ + R+ V + V L G D V K H +PS GY I
Sbjct: 96 LEQFVKTSLRVSRT--KVSYPIKFVELTEGGLIYQGKDFRVYTEKLDHRVPSFGYRIVEN 153
Query: 213 -----LLRKKLKKQYI-------HLK-GKQIEKLKKSGVEITDIILSPE-----VAFTGD 254
LL KL K +I LK G+QI + + D L P V D
Sbjct: 154 SRPGELLMNKLAKYHIPNGPLYGKLKAGEQIALADGTILNGKD-FLGPARPGRIVTIIYD 212
Query: 255 TTSEFMLNPRNAD-ALRAKILITEATFLDDEMSIEHAQQH 293
T S P A A A +L+ E+TF +E + H+ H
Sbjct: 213 TRS----TPNIAKLAQNADVLVHESTFAGNEAKLAHSYYH 248
>gi|402817053|ref|ZP_10866642.1| ribonuclease Z [Paenibacillus alvei DSM 29]
gi|402505159|gb|EJW15685.1| ribonuclease Z [Paenibacillus alvei DSM 29]
Length = 305
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 114/255 (44%), Gaps = 51/255 (20%)
Query: 100 LKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKED 158
L+ +G+C F+FITH H DH+ GLP ++SR + P T+F P +
Sbjct: 47 LQSPLKLGKC-------EFIFITHLHGDHLFGLPGLLSSRTYQGGVSPLTVFGPAGLHRF 99
Query: 159 VEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK-- 216
+ +F++ + ++ L + ++ G +E ++ H +PS GY I K
Sbjct: 100 IHTVFKLSET--HLPYELHIQEIESGVIWE-DEQFIITTLPLDHRVPSFGYRIQEKEKPG 156
Query: 217 ----KLKKQ--------YIHLK-GKQI-----EKLKKSGVEITDIILSPEVAFTGDTTSE 258
KL K+ Y LK G+ + E+++ S V I I VA GDT
Sbjct: 157 RLDLKLLKEKELPPGPLYGQLKRGQDVILSNGERIQASSV-IGKPIPGKSVAILGDTRP- 214
Query: 259 FMLNPRNADALR--AKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS-- 314
NA L IL+ EATF++D+ E+A + GH+ RQA Q+ VS
Sbjct: 215 ----CENAVTLAKDVDILVHEATFMEDKR--ENANEFGHS----TARQAA---QTAVSGG 261
Query: 315 AKVVPLTEGFKSVYT 329
AK + LT F S Y
Sbjct: 262 AKKLALTH-FSSRYN 275
>gi|402083277|gb|EJT78295.1| hypothetical protein GGTG_03396 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 379
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 76/216 (35%), Gaps = 48/216 (22%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G C + ++ +F+THGH DH +P +V
Sbjct: 53 YVLTGRSRAAWHTSFVIPQLNLLLDAGLCVNK-VRPKHIFLTHGHSDHTLLVPAFVDRD- 110
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD----------------------- 177
P I+ P I V+ L + D
Sbjct: 111 ----DRPDIYCPVEIAGKVDAFINAKTILNSRGDTADHGLGGGAGGPKEEEEEEGVDGEW 166
Query: 178 ---------LVALDVGETYEMR----------NDIVVRPFKTHHVIPSQGYVIYLLRKKL 218
LD T +R I F H P G+V ++L
Sbjct: 167 DGKGKRPRGATRLDTHVTSGLRASDTVTLARARTITATAFDCDHTTPCLGFVFSQTSRRL 226
Query: 219 KKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD 254
K ++ L +++ L+++GV++T +P AF GD
Sbjct: 227 KAEHQGLGAAELKALRRAGVDVTAPHSTPVFAFLGD 262
>gi|224476616|ref|YP_002634222.1| putative ribonuclease Z [Staphylococcus carnosus subsp. carnosus
TM300]
gi|254808665|sp|B9DNT1.1|RNZ_STACT RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|222421223|emb|CAL28037.1| putative ribonuclease Z [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 306
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 90/207 (43%), Gaps = 34/207 (16%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
N +FITH H DHI GLP + SR KP TI P IK VE + SL +
Sbjct: 57 NHIFITHMHGDHIYGLPGLLTSRSFQGGENKPLTIVGPRGIKNYVETTLQ--ASLSRLNY 114
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GK 228
+ + +D Y V + +H +PS GY I K L+ G
Sbjct: 115 PVTFIEIDDQLHYHHEG-FTVSAYNLNHGVPSFGYRIEAPTTSGKIDVASLREIGMEPGP 173
Query: 229 QIEKLKKSGVEI-TDII-----------LSPEVAFTGDTT---SEFMLNPRNADALRAKI 273
+ +++K S I D + + P++A GDT +E L A A +
Sbjct: 174 KYQEVKNSDSFIFNDKVYQSSDFKGEEKVGPKIAIFGDTMPCENELKL------ADNADL 227
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSE 300
L+ EAT++D + S+ A H H+H+++
Sbjct: 228 LVHEATYIDGDRSL--ADSHHHSHIND 252
>gi|223995477|ref|XP_002287412.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976528|gb|EED94855.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 619
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 109/251 (43%), Gaps = 45/251 (17%)
Query: 85 GVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNL 144
G+ + +PEL A D G ++Q V +THGH DHIG LP++ + L
Sbjct: 333 GLGRSADASAYFLPELGIALDAG-LHVSSLQPKTVLLTHGHRDHIGALPVHASHDSL--- 388
Query: 145 KPPTIFVPPSIKEDVEKLF--EIHRSLGNVELNLD--LVALDVGETYEMRND-------- 192
I VP I++ V K E + G+V + L AL T +++
Sbjct: 389 ----ILVPEPIQKLVHKFLVAEAQLNYGDVTQTEEETLEALGGFNTMGVKDGTKIMLPKD 444
Query: 193 --------IVVRPFKTHHV--IPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVE--- 239
+ ++ F H +P+ Y ++ +++LKK+Y + ++ + ++ E
Sbjct: 445 KYTGSPTPLGIQVFAAPHKEGVPACSYGVFRRKQRLKKEYQSMSKSELGAVLRTKRETGK 504
Query: 240 ------ITDIILSPEVAFTGDTTSEFMLNPRNADAL-RAKILITEATFL---DDEMSIEH 289
IT+ + +TGDTT +L R + L K +I E TFL E+ +
Sbjct: 505 SQEDTSITESYDEGVLFYTGDTTIS-LLRERWREILPNYKYIIHEVTFLGPPSSELDVS- 562
Query: 290 AQQHGHTHLSE 300
++ GHTH S+
Sbjct: 563 SEAKGHTHYSQ 573
>gi|403384070|ref|ZP_10926127.1| ribonuclease Z [Kurthia sp. JC30]
Length = 313
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 95/213 (44%), Gaps = 40/213 (18%)
Query: 110 PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRS 168
P + + + VFITH H DHI GLP ++ SR P TI+ P +KE V + +
Sbjct: 50 PIKPRKIDKVFITHLHGDHIFGLPGFIGSRSFLGGNTPLTIYGPKGLKEWVTMTNTVTGT 109
Query: 169 LGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL--- 225
++ L V ++ G YE +VR HV+P GY I +K + +
Sbjct: 110 --HLTYPLHFVEVEEGVIYE-DEQFIVRAMPLQHVVPCWGYRI---EQKALNGALDIDKA 163
Query: 226 ------KGKQIEKLKKSGVEIT----------DIILSPEVAFT----GDT--TSEFMLNP 263
KG + KL KSG +IT D++ P+ F GDT ++
Sbjct: 164 TALGVPKGPLLGKL-KSGEDITLADGTVVCSDDVLSEPKPGFIVTILGDTRKCENAIILA 222
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHT 296
++AD +L+ E+TF D + A Q+GH+
Sbjct: 223 QDAD-----VLVHESTF--DAATENLASQYGHS 248
>gi|302347992|ref|YP_003815630.1| ribonuclease Z [Acidilobus saccharovorans 345-15]
gi|302328404|gb|ADL18599.1| Ribonuclease Z [Acidilobus saccharovorans 345-15]
Length = 293
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 16/195 (8%)
Query: 107 GRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEI 165
G PT+ +F+ +THGH DHI GLP + + L K TI P + E + +L
Sbjct: 52 GISPTKV---DFIVLTHGHGDHINGLPGLLGTMQLSGRKSRLTIIAPKYLAEPIRELINA 108
Query: 166 HRSLGNVELNLDLVALDVGE---TYEMRNDIVVRPFKTHHVIPSQGY-VIYLLRKKLKKQ 221
++ +N+ V D G + R+ +V+ F+ H I + GY + + L ++ +
Sbjct: 109 NKFEDQFPVNVIDVTGDEGSLTLSSWGRDRLVLSWFRACHSIEAYGYSLTWELGPRIAEP 168
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFL 281
++ Q KL + G S ++++TGDT+ + A A +LI E+TF
Sbjct: 169 ---VEPSQARKLLEEGGSGLTSPRSFKLSYTGDTSP---CDSVVKGASGANVLIHESTF- 221
Query: 282 DDEMSIEHAQQHGHT 296
D M E A ++GH+
Sbjct: 222 DSSMKDE-ASKYGHS 235
>gi|296241882|ref|YP_003649369.1| RNAse Z [Thermosphaera aggregans DSM 11486]
gi|296094466|gb|ADG90417.1| RNAse Z [Thermosphaera aggregans DSM 11486]
Length = 250
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 104 FDIGR-CPTRAIQQNF-------VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
D+G C +R ++ VFITH H DH GL + + L N K + P
Sbjct: 34 LDVGEGCQSRMLKTGLSPLKVKTVFITHLHGDHYLGLFGLLQTMHLSNRKEALNVMAPKE 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ +EK E+ L N++ L+ + +D G Y + I V P+ H IP+ G+++
Sbjct: 94 LFALIEKYMELR--LMNIDFQLNFIDIDEGREY-IDEKITVIPYPVAHTIPAHGFLV--- 147
Query: 215 RKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT--TSEFMLNPRNADALRAK 272
K+G ++ +++TGDT ++ + RNAD
Sbjct: 148 --------------------KAGRQV--------ISYTGDTGPSANTIEYSRNAD----- 174
Query: 273 ILITEATFLDDEMSIEHAQQHGHT 296
ILI EATF E A + GH+
Sbjct: 175 ILIHEATF--TSAMKEEAHEQGHS 196
>gi|126652162|ref|ZP_01724344.1| ribonuclease Z [Bacillus sp. B14905]
gi|126591070|gb|EAZ85181.1| ribonuclease Z [Bacillus sp. B14905]
Length = 313
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 35/227 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR P TIF P +++ +E+ F + ++ ++ L
Sbjct: 62 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIFGPAGLQQWIEQTFSLSKT--HLTYPLH 119
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
V + G YE + V + HV+P GY I LL +K K + KG +
Sbjct: 120 FVEVQEGIVYE-DDCFTVYAKELRHVVPCYGYRIEQKDLPGELLIEKAKDLGVP-KGPLL 177
Query: 231 EKLKKSG---------VEITDIILSPEVAFT----GDTTSEFMLNPRNADALRAKILITE 277
+LK+ ++ D++ + FT GDT ++ A I++ E
Sbjct: 178 GQLKRGHDVVLDNGDVIQAKDVVAPAKKGFTLTILGDTK---YCEEAVQLSMGADIIVHE 234
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEDIR-----QAVLKLQSKVSAKVVP 319
ATF D + + A +GH E + +A L + +SA+ +P
Sbjct: 235 ATF--DGTTTDLAANYGHATNVEAAKVAQQARAQYLLLNHLSARFLP 279
>gi|169828892|ref|YP_001699050.1| ribonuclease Z [Lysinibacillus sphaericus C3-41]
gi|168993380|gb|ACA40920.1| Ribonuclease Z [Lysinibacillus sphaericus C3-41]
Length = 313
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 30/198 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR P TIF P +++ +E+ F + ++ ++ L
Sbjct: 62 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIFGPVGLQQWIEQTFALSKT--HLTYPLH 119
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
V + G YE V + HV+P GY I LL +K K + KG +
Sbjct: 120 FVEVQEGIVYE-DACFTVYAKELRHVVPCYGYRIEQKDLPGELLIEKAKDLGVP-KGPLL 177
Query: 231 EKLKKSG---------VEITDIILSPEVAFT----GDTTSEFMLNPRNADALRAKILITE 277
+LK+ ++ D++ S + FT GDT ++ A I++ E
Sbjct: 178 GQLKRGHDVVLENGDVIQAKDVVASAKKGFTLTILGDTK---YCEEAVQLSMGADIIVHE 234
Query: 278 ATFLDDEMSIEHAQQHGH 295
ATF D + + A +GH
Sbjct: 235 ATF--DGTTTDLAANYGH 250
>gi|288559874|ref|YP_003423360.1| ribonuclease Z Rnz [Methanobrevibacter ruminantium M1]
gi|288542584|gb|ADC46468.1| ribonuclease Z Rnz [Methanobrevibacter ruminantium M1]
Length = 303
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 40/222 (18%)
Query: 104 FDIGRCPTRA-IQQNF-------VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R I+ N +FITH H DHI GL + S GL + I+ P
Sbjct: 33 FDCGEGTQRQFIEANVSPMKVDKIFITHFHGDHILGLGGLIQSMGLRQREEDLDIYGPRG 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVG---ETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+K+ + + H ++ NL++ +D G ET + R + KT H +P+ Y I
Sbjct: 93 LKKVMNAI--THTGYFKIDFNLNIHEIDEGIVVETEKYR----IETTKTKHSVPNNAYSI 146
Query: 212 YLLRKK--LKKQYIHLK---GKQIEKLKKS-GVEITDIILSPE-----------VAFTGD 254
+K ++++ I L G KL + VEI I+ PE V ++GD
Sbjct: 147 IEKKKPRFIREKAIELGVPVGPAFGKLHRGEEVEIDGKIIKPEQVLGPPRKGLKVTYSGD 206
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHT 296
T F L D + ILI EATF +++ HA +H H+
Sbjct: 207 TRPSFKLIELARD---SDILIHEATFEEEDRL--HAYEHDHS 243
>gi|367027672|ref|XP_003663120.1| hypothetical protein MYCTH_2304593 [Myceliophthora thermophila ATCC
42464]
gi|347010389|gb|AEO57875.1| hypothetical protein MYCTH_2304593 [Myceliophthora thermophila ATCC
42464]
Length = 382
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS-GVEITDIILSPEVAFTGDTT 256
F H +P GYV + KLK +Y L G ++ L++ GVEIT + +P AF GDTT
Sbjct: 222 FACDHTVPCLGYVFSAVTPKLKPEYRGLAGAELRALRQERGVEITAPVATPVFAFLGDTT 281
Query: 257 SEFMLN---------PRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
+ + + + A +++ITE +FL +E + A + HT S+
Sbjct: 282 ASVLASGPEWLGGGGGSGSGAGGVRVVITECSFLWEEHR-DQADRTRHTIWSD 333
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL 141
T+ G S T +IP+L D G ++ +F+THGH DH P +V
Sbjct: 30 TLTGRSRAAWHTSFVIPQLNLLLDAGLV-VNNLRPKHIFLTHGHSDHTLLTPAFVKRS-- 86
Query: 142 YNLKPPTIFVPPSIKEDVE 160
PP I+ P +K+ ++
Sbjct: 87 ---DPPDIYCPAEMKDALD 102
>gi|414160873|ref|ZP_11417136.1| ribonuclease Z [Staphylococcus simulans ACS-120-V-Sch1]
gi|410876552|gb|EKS24450.1| ribonuclease Z [Staphylococcus simulans ACS-120-V-Sch1]
Length = 306
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 51/246 (20%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNL--KPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGEDKPLTIIGPR 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + S +LN + +++ E ++ + + +H +PS GY I
Sbjct: 96 GIKSYVEMTLQASLS----KLNYPITFIEIDEQLHYHHEGFTISAYALNHGVPSFGYRIE 151
Query: 213 LLRKKLKKQYIHLK------GKQIEKLKKSGVEI-------------TDIILSPEVAFTG 253
K LK G + +++K+ + +D I P++A G
Sbjct: 152 APTTPGKIDVAALKAIGMEPGPKYQEVKEQNTFVFNNQTYDSSQFKGSDKI-GPKIAIFG 210
Query: 254 DTT---SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQ 310
DT +E++L A +++ EAT++D + ++ A H H+H+S+ VLKL
Sbjct: 211 DTMPCKNEYLL------AEDVDVIVHEATYIDGDRTL--ADSHHHSHISD-----VLKLL 257
Query: 311 SKVSAK 316
AK
Sbjct: 258 EDSHAK 263
>gi|448730275|ref|ZP_21712583.1| ribonuclease Z [Halococcus saccharolyticus DSM 5350]
gi|445793443|gb|EMA44015.1| ribonuclease Z [Halococcus saccharolyticus DSM 5350]
Length = 305
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 101/245 (41%), Gaps = 39/245 (15%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF+TH H DH+ GLP + + + P I PP
Sbjct: 33 FDCGEGTQRQMMRFGTGFTVSHVFLTHLHGDHVLGLPGLCQTLDFNDREEPLAIHTPPGT 92
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR 215
+ VE L + + + ++ + G ++ +R F T H S GY +
Sbjct: 93 RSTVENLVGVTGARPGYPVRVNEAS--PGGVVLREDEYEIRAFATDHRTQSVGYALVEDD 150
Query: 216 KKLKKQYIHL------KGKQIEKLKKS-GVEITD-IILSPE-----------VAFTGDTT 256
+K + H +G + +L + VE+ D ++ PE V +TGDT
Sbjct: 151 RKGRFDREHAEELGVPEGPKFSRLHEGETVELEDGTVVEPEQVVGPPRPGRKVVYTGDTR 210
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAK 316
D A +LI EATF DD E A Q GH S I+ A +L ++ AK
Sbjct: 211 PTGTTVEAATD---ADLLIHEATFTDDRA--ERAAQTGH---STSIQAA--ELANRAGAK 260
Query: 317 VVPLT 321
+ LT
Sbjct: 261 RLALT 265
>gi|255513710|gb|EET89975.1| ribonuclease Z [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 300
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 28/194 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ G+ V + LY P +IFVP + E L + ++ E+
Sbjct: 57 IFITHMHGDHVIGIAGLVRTLSLYKRSEPLSIFVPRGYESAAESLLKFDSAIMTYEIK-- 114
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK----KLKKQYIHLKGKQIEKL 233
++ + G Y I VR FK H IP+ GY K K K + + +KGK+ ++
Sbjct: 115 VIGIKSGVVYR-DEGIEVRAFKLVHSIPTYGYSFVEEGKLHFVKSKAESLGIKGKKFSEI 173
Query: 234 KKSG--------VEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILITEAT 279
+K G +++++I PE + DT + ++ RNA+ +L+ EAT
Sbjct: 174 QKKGKIKIDGKLIKLSEITY-PEKEKKFTYASDTRPAASTVIAARNAE-----LLVHEAT 227
Query: 280 FLDDEMSIEHAQQH 293
+ D + ++H
Sbjct: 228 YCADLERLARERKH 241
>gi|407797337|ref|ZP_11144281.1| ribonuclease Z [Salimicrobium sp. MJ3]
gi|407018300|gb|EKE31028.1| ribonuclease Z [Salimicrobium sp. MJ3]
Length = 310
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 35/229 (15%)
Query: 109 CPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHR 167
P +A + VFITH H DHI GLP +++SR P T++ P ++E VE I
Sbjct: 49 SPVKARRIEKVFITHLHGDHIYGLPGFLSSRSFQGGSEPLTVYGPEGLQEFVESALRI-- 106
Query: 168 SLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVI-------YLLRKKLK 219
L DL + E + N+ + H +PS G+ I L ++KL+
Sbjct: 107 --SGTHLTYDLHFRTIEEGFREENEQFEISAHLLEHGLPSYGFFIKEKPKPGALQKEKLE 164
Query: 220 KQ-------YIHLKGKQIEKLKKSG-VEITDIILSPE----VAFTGDTTSEFMLNPRNAD 267
Y +K ++ L+ V+ +D++ +P+ VA GDT R+ +
Sbjct: 165 AMGIRPGPVYQTIKNQETTILENGTVVQRSDVLSAPKPGRSVAILGDT----RFRERHME 220
Query: 268 ALR-AKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSA 315
++ A +LI E TF E + + H S ++ A QS V A
Sbjct: 221 WIKGADVLIHEGTFEGKESRMAYDYYH-----STVVQAAETAAQSGVDA 264
>gi|156338764|ref|XP_001620031.1| hypothetical protein NEMVEDRAFT_v1g223552 [Nematostella vectensis]
gi|156204276|gb|EDO27931.1| predicted protein [Nematostella vectensis]
Length = 607
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 52/236 (22%)
Query: 93 TCVIIPELKCAFD---------IGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN 143
T I EL FD +G+C I++ VFI+H DH+ GL Y L++
Sbjct: 182 TWYFIEELGILFDAGDGLVSGLMGKCG--KIKK--VFISHADRDHLTGLLQY---NQLFS 234
Query: 144 LKPPTIFVPPSIK-----EDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
PTI+ P + E K F+ H + E +D G+ ++ I V
Sbjct: 235 HIGPTIYYPKGSQSFPFLEAFTKKFDPHIQGTSWE------PIDTGQYIAIKERISVESL 288
Query: 199 KTHHVIPSQG------YVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPE---- 248
+ HV ++G Y ++ +KKLK +++ + + I+K++ +E + L E
Sbjct: 289 ENEHVYTTEGIIKSLSYKVWETKKKLKTEFLGMPSEAIKKIR---IEKGESFLMEEQKTN 345
Query: 249 -VAFTGDTTSEFMLNPRNADALR---AKILITEATFLDDEMSIEHAQQHGHTHLSE 300
++++GDT D R +K+LI EATFL E + ++ H+ L E
Sbjct: 346 LLSYSGDTPV--------VDYTRFEGSKVLIHEATFLTKEETQTKNDKNRHSSLEE 393
>gi|116754237|ref|YP_843355.1| ribonuclease Z [Methanosaeta thermophila PT]
gi|116665688|gb|ABK14715.1| RNAse Z [Methanosaeta thermophila PT]
Length = 305
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 108/249 (43%), Gaps = 42/249 (16%)
Query: 111 TRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLG 170
T ++ + +F+TH H DHI G+P + + + P + P ++ I SLG
Sbjct: 49 TGMMRLSHIFLTHLHADHILGIPGLLETMAFQGRENPLVIAGPP---RTARMVSILNSLG 105
Query: 171 NVELNLDLVALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIYL-LR--KKLKKQYIHL 225
+ ++ A+++ G+ M N V T H +PS GY++ +R + K++ I L
Sbjct: 106 CCTRDFEVRAMEMRPGDAVRM-NGYTVTAIATQHSVPSLGYMLLEDMRPGRFNKERAIEL 164
Query: 226 K---GKQIEKLKKSG-VEITDIILSPE-----------VAFTGDT--TSEFMLNPRNADA 268
G +L+K VEI ++ PE + ++GDT T+E RNAD
Sbjct: 165 GVPVGPMFGRLQKGEIVEIDGRVVRPEDVLGAPRPGRKIVYSGDTRPTAEIEEASRNAD- 223
Query: 269 LRAKILITEATFLDDEMSIEHAQQHGHT--------HLSEDIRQAVLK-LQSKVSAKVVP 319
+LI + DD +E A + HT +R+ VL + S+ S P
Sbjct: 224 ----LLIHDGALADD--MLEWAVETKHTTAGEAAALAARAGVRRLVLTHISSRYSEDTTP 277
Query: 320 LTEGFKSVY 328
L + V+
Sbjct: 278 LLNDARKVF 286
>gi|448606638|ref|ZP_21659064.1| ribonuclease Z [Haloferax sulfurifontis ATCC BAA-897]
gi|445738846|gb|ELZ90358.1| ribonuclease Z [Haloferax sulfurifontis ATCC BAA-897]
Length = 317
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 109/261 (41%), Gaps = 43/261 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F+TH H DHI G+P + + + + I PP
Sbjct: 35 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLDFNDREASLAIHGPPGS 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
K +EKL +H ++ + + G +D VR F T H S GY +
Sbjct: 95 KRHLEKL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDTT 256
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 153 RPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGAVVRSEQVVGDPRPGRTVVYTGDTR 212
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQ-AVL 307
L+ A A +L+ +ATF D+E E A+Q H+ E D+R+ A+
Sbjct: 213 P---LDSTVEVARDADLLVHDATFTDEEA--ERAKQTAHSTAREAARVARDADVRRFALT 267
Query: 308 KLQSKVSAKVVPLTEGFKSVY 328
+ ++ +A PL E + VY
Sbjct: 268 HISARYAADPSPLLEQAREVY 288
>gi|404418720|ref|ZP_11000487.1| ribonuclease Z [Staphylococcus arlettae CVD059]
gi|403489313|gb|EJY94891.1| ribonuclease Z [Staphylococcus arlettae CVD059]
Length = 306
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 102/244 (41%), Gaps = 47/244 (19%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEATQHQILHHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGEGKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
IK VE + S + L + LD Y+ N V +H I S GY I
Sbjct: 96 GIKSFVETTLALSES--RLNYTLTFIELDNHFAYQ-HNGFTVTADILNHGITSFGYRIEA 152
Query: 214 LRKKLKKQYIHLK------GKQIEKLKK-SGVEITDIILS-----------PEVAFTGDT 255
+ K LK G + +++K+ E D+I + P VA GDT
Sbjct: 153 PQTSGKIDVQALKSIGLEPGPKYQEVKEHETFEFEDVIYNSCDFKGAPTPGPIVAIFGDT 212
Query: 256 ---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSK 312
+E+ + AL A +++ E+T+++ + ++ A + H+H+ + V L K
Sbjct: 213 KPCANEYQI------ALNADVMVHESTYIEGDKTL--ANNYHHSHIED-----VFALMQK 259
Query: 313 VSAK 316
+ K
Sbjct: 260 ANVK 263
>gi|292654323|ref|YP_003534220.1| ribonuclease Z [Haloferax volcanii DS2]
gi|448293867|ref|ZP_21483970.1| ribonuclease Z [Haloferax volcanii DS2]
gi|342179243|sp|D4GZ88.1|RNZ_HALVD RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|291370702|gb|ADE02929.1| ribonuclease Z [Haloferax volcanii DS2]
gi|445569788|gb|ELY24359.1| ribonuclease Z [Haloferax volcanii DS2]
Length = 315
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + ++ + PP
Sbjct: 33 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLD-FNDRDDSLAIHGPPG 91
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
K +E+L +H ++ + + G +D VR F T H S GY +
Sbjct: 92 SKGHLEQL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVED 149
Query: 212 ----YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 150 DRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGDT 209
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQ-AV 306
LN A A +L+ +ATF D+E E A+Q H+ E D+R+ A+
Sbjct: 210 RP---LNSTVEVACDADLLVHDATFTDEEA--ERAKQTAHSTAREAARVARDADVRRFAL 264
Query: 307 LKLQSKVSAKVVPLTEGFKSVY 328
+ ++ +A PL E + VY
Sbjct: 265 THISARYAADPSPLLEQAREVY 286
>gi|227544989|ref|ZP_03975038.1| ribonuclease Z [Lactobacillus reuteri CF48-3A]
gi|338204259|ref|YP_004650404.1| ribonuclease Z [Lactobacillus reuteri SD2112]
gi|133930541|gb|ABO43841.1| metal-dependent hydrolase [Lactobacillus reuteri]
gi|227185032|gb|EEI65103.1| ribonuclease Z [Lactobacillus reuteri CF48-3A]
gi|336449499|gb|AEI58114.1| ribonuclease Z [Lactobacillus reuteri SD2112]
Length = 309
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 37/210 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR +P TI+ P IK V+ ++ S L+
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPIGIKRYVQTSLQVSES----RLSYP 114
Query: 178 LVALDVGETYEMRND----IVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ----- 221
L +++ + E+ ND ++ R K H I GY I L +KL++Q
Sbjct: 115 LHFVEITDDGELFNDHGFRVIAR--KLDHKIACFGYRIEEADHPGELQVEKLREQKVPSG 172
Query: 222 --YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAK 272
Y LK GK + ++ D I +P+ +A GDT T +L +NAD
Sbjct: 173 PIYGQLKAGKTVTLPDGRVLDGHDFIGTPQPGRIIAILGDTRQTKNAILLAQNAD----- 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
+L+ E+TF DE + + H + + +I
Sbjct: 228 VLVHESTFAKDETKMAYNYYHSTSKQAAEI 257
>gi|374295232|ref|YP_005045423.1| RNAse Z [Clostridium clariflavum DSM 19732]
gi|359824726|gb|AEV67499.1| RNAse Z [Clostridium clariflavum DSM 19732]
Length = 303
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 19/197 (9%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV-PPSIKEDVEKLFEIHRSLGNVELNLD 177
V TH H DH+ GLP ++ + G + P + V PP IKE VE L I L L+
Sbjct: 57 VLFTHYHGDHVAGLPGFLLTLGNSGREEPLMLVGPPGIKEVVEGLTVISPEL---PYELN 113
Query: 178 LVALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVIYLLRKKL----KKQYIHLKGKQIEK 232
L+ L E+ E+ + I ++ H IP Y I L R+ + + + + K
Sbjct: 114 LIELPDSESAEVSVSGIFIKSLPVDHTIPCLSYCIELKRQGKFDVDRARELMIPVNYWNK 173
Query: 233 LKKS-GVEITDIILSPEVAF---TGDTTSEFMLNPRNADAL-----RAKILITEATFLDD 283
L+K V + D +++PE+ + + R +D L + + I E + D
Sbjct: 174 LQKGENVTVDDRVITPEMVLGEPRKGIKVCYCTDTRPSDELAEFIKDSDLFICEGMY-GD 232
Query: 284 EMSIEHAQQHGHTHLSE 300
E A+Q H SE
Sbjct: 233 ENDTHKAEQKKHMTFSE 249
>gi|57641049|ref|YP_183527.1| ribonuclease Z [Thermococcus kodakarensis KOD1]
gi|73917868|sp|Q5JE70.1|RNZ_PYRKO RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|57159373|dbj|BAD85303.1| ribonuclease Z [Thermococcus kodakarensis KOD1]
Length = 314
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH G+P + + L++ KP I+ P + V+ L + G D
Sbjct: 57 IFITHFHGDHYLGIPALIQTMNLWDRQKPLHIYGPKYTFQFVQNLL----NSGFFRPGFD 112
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+ ++GET D + FK H IP+ GYV L++KL ++Y +G +
Sbjct: 113 IHVHELGETRLKFGDYEIWSFKVEHGIPALGYVFKEKDRRGKFLKEKL-REYGLEEGPIL 171
Query: 231 EKLKKSG-VEITDIILSPE-----------VAFTGDTTSEFMLNPRNADAL---RAKILI 275
KL++ G +E I+ E + +TGDT P L RA +LI
Sbjct: 172 GKLEREGKIEWNGRIIRLEDVTGPRRKGLKIVYTGDT------EPCERVKLFSERADLLI 225
Query: 276 TEATFLD 282
EAT+L+
Sbjct: 226 HEATYLN 232
>gi|448611228|ref|ZP_21661862.1| ribonuclease Z [Haloferax mucosum ATCC BAA-1512]
gi|445743660|gb|ELZ95141.1| ribonuclease Z [Haloferax mucosum ATCC BAA-1512]
Length = 311
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 115/267 (43%), Gaps = 45/267 (16%)
Query: 101 KCAFDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV-- 151
+ FD G R + + + +F+TH H DHI G+P + + +N + + +
Sbjct: 32 RLLFDCGEGTQRQMMRFGTGFGISHLFVTHLHGDHILGIPGLIQTLD-FNERDDALAIHG 90
Query: 152 PPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
PP K+ +E L +H ++ + + G +D VR F+T H S GY +
Sbjct: 91 PPGSKQHLETL--VHAGGYQPGFHVSVHEVRPGTVAYRDDDYEVRAFETEHRTSSIGYAL 148
Query: 212 -------YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFT 252
R+K + + + G+ +E + VE ++ P +V +T
Sbjct: 149 VEDDRPGRFDREKAESLGVPVGPAFGRLHAGEDVELEDGTVVESEQVVGDPRSGRKVVYT 208
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQ 304
GDT L+ A A +L+ +ATF D+E + A+Q H+ E D+R+
Sbjct: 209 GDTRP---LDSTVEVARDADLLVHDATFTDEEA--DRAKQTAHSTAREAARVARDADVRR 263
Query: 305 -AVLKLQSKVSAKVVPLTEGFKSVYTS 330
A+ + ++ +A PL E + VYT
Sbjct: 264 FALTHISARYAANPDPLLEQAREVYTG 290
>gi|425737321|ref|ZP_18855594.1| ribonuclease Z [Staphylococcus massiliensis S46]
gi|425482669|gb|EKU49825.1| ribonuclease Z [Staphylococcus massiliensis S46]
Length = 305
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 110/262 (41%), Gaps = 73/262 (27%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEATQHQILHHSIKLGKVSHIFITHMHGDHIFGLPGVLTSRSFQGGEDKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT-----HHVIPSQG 208
IK VE ++ +S ++ +D++ LD +EM D+V+ F+ +H IPS G
Sbjct: 96 GIKSFVEMNLKLSQS--HLNYPIDVIELD----HEM--DLVINEFQVTAKILNHGIPSYG 147
Query: 209 YVIYLLRKKLKKQYIHLKGK-QIEKLKKSGVEITDIIL---------------------- 245
+ I + GK +EKL++ G+E +
Sbjct: 148 FRI---------EAPSTVGKLDVEKLREIGMEPGPLYQQVKSEDTFSYNGEIYHSRDFRG 198
Query: 246 ----SPEVAFTGDTTSEFMLNPRNADAL--RAKILITEATFLDDEMSIEHAQQHGHTHLS 299
P ++ GDT N D L A +++ EATFLD + ++ AQ + H+H+
Sbjct: 199 PSKKGPVISVLGDTKP-----CSNEDVLVENADVMVHEATFLDGDKTL--AQNYHHSHID 251
Query: 300 EDIRQAVLKLQSKVSAKVVPLT 321
+ V +L + K LT
Sbjct: 252 D-----VFELMQRNDVKYSCLT 268
>gi|389820613|ref|ZP_10209827.1| ribonuclease Z [Planococcus antarcticus DSM 14505]
gi|388462812|gb|EIM05203.1| ribonuclease Z [Planococcus antarcticus DSM 14505]
Length = 314
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 103/229 (44%), Gaps = 39/229 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP + SR P I+ P IKE VE R+ L
Sbjct: 59 IFISHMHGDHIFGLPGLLGSRSFQGGDEPLEIYGPSGIKEFVEMTLTFSRT----HLTYR 114
Query: 178 LVALDVGETYEMRNDIV-VRPFKTHHVIPSQGYVIY---LLRKKLKKQYIHL---KGKQI 230
+V ++ E ++++ V +HVIPS G+ I L K + + + L KG +
Sbjct: 115 IVYHELTEGVLFEDELMTVETRLLNHVIPSYGFRIIQKPLPPKLMVNKALALGVPKGPLL 174
Query: 231 EKLKKSG-VEITD-------IILSPE-----VAFTGDT--TSEFMLNPRNADALRAKILI 275
KLK G VEITD + PE V GDT + R AD +L+
Sbjct: 175 AKLKNGGDVEITDGRWVRSGDVTEPEEPGFIVTILGDTRYCEAAVELGRGAD-----VLV 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLK-----LQSKVSAKVVP 319
EATF D S + A ++GH+ + + A L + + +SA+ +P
Sbjct: 230 HEATF--DGTSKKMAGEYGHSTVYDAAETARLAGAATLILNHISARFLP 276
>gi|448482783|ref|ZP_21605554.1| ribonuclease Z [Halorubrum arcis JCM 13916]
gi|445821069|gb|EMA70865.1| ribonuclease Z [Halorubrum arcis JCM 13916]
Length = 310
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 105/262 (40%), Gaps = 45/262 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF++H H DH+ G+P V + G + P T+ PP
Sbjct: 35 FDCGEGTQREMMRAGTGFAVDRVFVSHLHGDHVLGIPGLVQTLGFNDRTDPLTVHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ + L +H N + + + GE ++ VR F+T H SQGYV+
Sbjct: 95 DDHLHDL--VHAVGHNPAFPVRIEPVAPGEVAYETDEYEVRAFETEHRTVSQGYVLEEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R K + + + +G+ +E + VE ++ P ++ +T DT
Sbjct: 153 RPGRFDRPKAEALGVPVGPKFGRLHEGESVEAEDGTVVEPEQVVGPPRPGRKLVYTADT- 211
Query: 257 SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-------RQAV 306
PR A A A +LI +ATF DD H + I R A+
Sbjct: 212 -----RPREATVEAAEDADLLIHDATFADDMADRARDTAHSTGREAGSIADRADAKRLAL 266
Query: 307 LKLQSKVSAKVVPLTEGFKSVY 328
+ + S+ +A P+ + +
Sbjct: 267 VHISSRYAADARPIRRDAREAF 288
>gi|448582762|ref|ZP_21646266.1| ribonuclease Z [Haloferax gibbonsii ATCC 33959]
gi|445732410|gb|ELZ83993.1| ribonuclease Z [Haloferax gibbonsii ATCC 33959]
Length = 317
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + ++ + PP
Sbjct: 35 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLD-FNDRDASLAIHGPPG 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
K +EKL +H ++ + + G +D VR F T H S GY +
Sbjct: 94 SKRHLEKL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVED 151
Query: 212 ----YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 152 DRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGDT 211
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQ-AV 306
L+ A A +L+ +ATF D+E E A+Q H+ E D+R+ A+
Sbjct: 212 RP---LDSTVEVARDADLLVHDATFTDEEA--ERAKQTAHSTAREAARIARDADVRRFAL 266
Query: 307 LKLQSKVSAKVVPLTEGFKSVY 328
+ ++ +A PL E + VY
Sbjct: 267 THISARYAADPSPLLEQAREVY 288
>gi|389644470|ref|XP_003719867.1| hypothetical protein MGG_17714 [Magnaporthe oryzae 70-15]
gi|351639636|gb|EHA47500.1| hypothetical protein MGG_17714 [Magnaporthe oryzae 70-15]
gi|440470028|gb|ELQ39117.1| hypothetical protein OOU_Y34scaffold00514g34 [Magnaporthe oryzae
Y34]
gi|440489500|gb|ELQ69147.1| hypothetical protein OOW_P131scaffold00186g4 [Magnaporthe oryzae
P131]
Length = 381
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 13/151 (8%)
Query: 167 RSLGNVELNLDLV-ALDVGETYEMR--NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYI 223
R G L+ ++ L GET +R F H +P GYV L ++L+ +Y
Sbjct: 184 RPKGRTSLDTHVIHGLTDGETIPLRRAQTFTATAFACDHTVPCLGYVFGLNSRRLRPEYR 243
Query: 224 HLKGKQIEKLKKS-GVE-ITDIILSPEVAFTGDTTSEFM-LNPRNADALRAKI--LITEA 278
L G ++++L+++ G E IT L+P AF GDTT+ + + P D L+ I +ITE
Sbjct: 244 DLPGAKLKELRQAQGAEAITAPHLTPLFAFLGDTTAATLSVGP---DWLQDGIPVVITEC 300
Query: 279 TFLDDEMSIEHAQQHGHTHLSEDIRQAVLKL 309
+FL +E + A++ HT L D+ V +
Sbjct: 301 SFLFEEHRAQ-AEKTKHT-LWADLEPVVRRF 329
>gi|260663645|ref|ZP_05864534.1| ribonuclease Z [Lactobacillus fermentum 28-3-CHN]
gi|260551871|gb|EEX24986.1| ribonuclease Z [Lactobacillus fermentum 28-3-CHN]
Length = 310
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 90/197 (45%), Gaps = 29/197 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR P TI+ P IK+ V+ ++ S + L +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIYGPKGIKDFVQTALKVSESRLSYPLKFE 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ-------YI 223
+ D GE ++ + V + H I S GY + L+ +K+++ Y
Sbjct: 119 ELTGD-GEVFKDQT-FTVTARRLDHKIASFGYRVEEAAHPGELMVEKVRQAGIPSGPLYG 176
Query: 224 HLKGKQIEKL-KKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
LK ++ L V+ D I +P+ VA GDT T + + AD +L+
Sbjct: 177 QLKRGEVVTLPDGRTVDGHDFIGAPQPGRIVAILGDTRVTDNAVKLAKGAD-----VLVH 231
Query: 277 EATFLDDEMSIEHAQQH 293
EATF +E + H H
Sbjct: 232 EATFAKNEQRLAHNYYH 248
>gi|448560538|ref|ZP_21633986.1| ribonuclease Z [Haloferax prahovense DSM 18310]
gi|445722188|gb|ELZ73851.1| ribonuclease Z [Haloferax prahovense DSM 18310]
Length = 315
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + ++ + PP
Sbjct: 33 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLD-FNDRDDSLAIHGPPG 91
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
K +EKL +H ++ + + G +D VR F T H S GY +
Sbjct: 92 SKRHLEKL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVED 149
Query: 212 ----YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 150 DRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGDT 209
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQ-AV 306
L+ A A +L+ +ATF D+E E A+Q H+ E D+R+ A+
Sbjct: 210 RP---LDSTVEVARDADLLVHDATFTDEEA--ERAKQTAHSTAREAARIARDADVRRFAL 264
Query: 307 LKLQSKVSAKVVPLTEGFKSVY 328
+ ++ +A PL E + VY
Sbjct: 265 THISARYAADPSPLLEQAREVY 286
>gi|257076086|ref|ZP_05570447.1| metal dependent hydrolase [Ferroplasma acidarmanus fer1]
Length = 252
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 49/188 (26%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ I+H HLDH GGL + RG N+K TI P I+++ EK+ +I+ + N ++
Sbjct: 53 MLISHMHLDHYGGLAEILWYRGARNVKDELTIMGPKGIRKNTEKILQIYNTPDNYMFSVK 112
Query: 178 LVALDV---GETYEMRNDIV-------VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKG 227
+++ GE YE++ + + + F +H+IP Y
Sbjct: 113 PNYVEINNNGEVYEIKTEFIDKSENDYIEAFSGNHIIPDNMY------------------ 154
Query: 228 KQIEKLKKSGVEITDIILSPEVAFTGDT--TSEFMLNPRNADALRAKILITEATFLDDEM 285
+L+ G +A+TGDT L NAD IL+ E T+ D +
Sbjct: 155 ----RLEYRG---------NTIAYTGDTAYNDNIPLLGENAD-----ILLHEMTYTDKDA 196
Query: 286 SIEHAQQH 293
I +H
Sbjct: 197 EIAKFWKH 204
>gi|222478515|ref|YP_002564752.1| ribonuclease Z [Halorubrum lacusprofundi ATCC 49239]
gi|254808639|sp|B9LQT0.1|RNZ_HALLT RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|222451417|gb|ACM55682.1| ribonuclease Z [Halorubrum lacusprofundi ATCC 49239]
Length = 310
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 107/262 (40%), Gaps = 45/262 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F++H H DH+ G+P V + G + P TI PP
Sbjct: 35 FDCGEGTQRGMMRFGTGFGIDHLFVSHLHGDHVLGIPGLVQTLGFNDRAEPLTIHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
++D+ L +H + + + ++ GE + VR F+T H SQGYV+
Sbjct: 95 EDDLHDL--VHAVGHDPAFQIRIESVAPGEVALDADGYEVRAFETVHRTKSQGYVLEEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R K ++ + + +G+ +E S VE ++ P + +T DT
Sbjct: 153 RPGRFDRPKAEELGVPVGPKFGRLHEGEPVEAEDGSIVEPDQVVGPPRPGRKFVYTADT- 211
Query: 257 SEFMLNPRN---ADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-------RQAV 306
PR A A A +L+ +ATF DD H + + R A+
Sbjct: 212 -----RPREGTVAVAEDADLLVHDATFADDMEDRARDTAHSTGREAGSVAERAGAKRLAL 266
Query: 307 LKLQSKVSAKVVPLTEGFKSVY 328
+ + S+ +A P+ + +
Sbjct: 267 VHISSRYAADASPIRREAREAF 288
>gi|284162424|ref|YP_003401047.1| ribonuclease Z [Archaeoglobus profundus DSM 5631]
gi|284012421|gb|ADB58374.1| ribonuclease Z [Archaeoglobus profundus DSM 5631]
Length = 305
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 50/268 (18%)
Query: 100 LKCAFDIGRCPTRAI---QQNF----VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFV 151
++ FD G R + + F VFITH H DH G+ + + L + +FV
Sbjct: 31 IRLLFDCGEGTQRQMMIAKTGFKIHSVFITHLHTDHFIGIFGLIETMSLNERTERLRVFV 90
Query: 152 PPSIKEDVEKLFEIHRSLGNVELN--LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
P KE+V+ + + R G LN +++ L G+ + + FKT H++PS GY
Sbjct: 91 P---KENVDFMKTLFRMFGYHNLNYPIEVYGLKDGDEVDF-GKFKILAFKTDHIVPSLGY 146
Query: 210 VIYLLRKKLKKQYIHLKGKQI---------EKLKKSGVEITDIILSPE-----------V 249
L+ + ++ K + + + ++ +EI I++P+ V
Sbjct: 147 A--LIERDRPGKFDRAKAEALGIPPGPLYSKLVRGEAIEINGRIITPDMVVGPKRRGRKV 204
Query: 250 AFTGDT--TSEFMLNPRNADALRAKILITEATFLDD--EMSIE----HAQQHGHTHLSED 301
+TGDT T + R+AD +LI +A+F D + +I+ A++ +
Sbjct: 205 VYTGDTRPTERTIEVARDAD-----LLIHDASFTSDLQDWAIQTKHSTAREAAEIAKRAN 259
Query: 302 IRQAVLK-LQSKVSAKVVPLTEGFKSVY 328
+RQ +L + ++ S PL E K ++
Sbjct: 260 VRQLILTHISARYSKDATPLLEEAKEIF 287
>gi|448444601|ref|ZP_21589891.1| ribonuclease Z [Halorubrum saccharovorum DSM 1137]
gi|445686014|gb|ELZ38355.1| ribonuclease Z [Halorubrum saccharovorum DSM 1137]
Length = 310
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 111/269 (41%), Gaps = 55/269 (20%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F++H H DH+ G+P V + G + + P TI PP
Sbjct: 35 FDCGEGTQRGMMRHGTGFGIDHLFVSHLHGDHVLGIPGLVQTLGFNDREDPLTIHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGN--------VELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQ 207
+D+ L +H ++G+ E++ VALD + YE VR F+T H SQ
Sbjct: 95 GDDLHDL--VH-AVGHDPAFRIRIDEVSPGGVALDA-DGYE------VRAFETVHRTVSQ 144
Query: 208 GYVI-------YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----E 248
GYV+ R K ++ + + G+ +E S VE ++ P +
Sbjct: 145 GYVLEEDDRPGRFDRPKAEELGVPVGPKFGRLHAGEPVEAEDGSTVEPDQVVGPPRPGRK 204
Query: 249 VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI------ 302
+T DT AD A +L+ +ATF DD H + I
Sbjct: 205 FVYTADTRPRENTVEAAAD---ADLLVHDATFADDMADRARDTAHSTGREAGSIAERADA 261
Query: 303 -RQAVLKLQSKVSAKVVPLTEGFKSVYTS 330
R A++ + S+ +A P+ + ++
Sbjct: 262 KRLALVHISSRYAADASPIRRDAREAFSG 290
>gi|341581908|ref|YP_004762400.1| ribonuclease Z [Thermococcus sp. 4557]
gi|340809566|gb|AEK72723.1| ribonuclease Z [Thermococcus sp. 4557]
Length = 314
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 44/213 (20%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPS 154
FD+G R + +FITH H DH GL + + L++ KP I+ P
Sbjct: 34 FDVGEGTMRQMNTAKLSPMKVEKIFITHFHGDHYLGLAALIQTMNLWDREKPLHIYGPKY 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
E V+ + G D+ ++GET D + FK H +P+ GYV
Sbjct: 94 TFEFVQHFLQS----GFFRPGFDIHVHELGETRLKFGDYEIWSFKVEHGVPALGYV---F 146
Query: 215 RKKLKK---------QYIHLKGKQIEKLKKSG-VEITDIILSPE-----------VAFTG 253
R+K ++ +Y +G + KL++ G +E I+ E V +TG
Sbjct: 147 REKDRRGKFLPEKLAEYGLSEGPILGKLEREGKIEWNGRIIRLEDVTGPRRKGLKVVYTG 206
Query: 254 DT--TSEFMLNPRNADALRAKILITEATFLDDE 284
DT L NAD +LI EAT+L+ E
Sbjct: 207 DTEPAERVRLFAENAD-----LLIHEATYLNSE 234
>gi|290559852|gb|EFD93175.1| beta-lactamase domain protein [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 250
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 88 IGGHETCVIIPELKCAFDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASR 139
I G + + K AFD G ++ + F+ ITH HLDH G+ + R
Sbjct: 14 IKGQRNVSFVLDDKIAFDFGPHSLESLLEMGIDPLKIKFLLITHMHLDHYSGIAELLWYR 73
Query: 140 GLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
++N K P +F P IK + +L E L L V +V + E ++ V+ F
Sbjct: 74 SIHNAKTPLMVFGPKGIKNNTARLME---DLKTPRLWSKQVYNNV-KYIEDKSHSFVQVF 129
Query: 199 KTHHVIPSQGY 209
HH+IP GY
Sbjct: 130 PAHHLIPDNGY 140
>gi|261403021|ref|YP_003247245.1| ribonuclease Z [Methanocaldococcus vulcanius M7]
gi|261370014|gb|ACX72763.1| ribonuclease Z [Methanocaldococcus vulcanius M7]
Length = 318
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 34/216 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI G+P + S G + K IF P K+ ++ E + N +
Sbjct: 57 NHIFITHLHGDHILGIPGLLQSLGFFGREKELKIFGPEGTKDIIKNALEFGYNYINYPIK 116
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK--------- 226
+ + +D + + T H +PS Y+ +++KK + +K
Sbjct: 117 VYEIKEKNPAIVLKEDDYEIITYPTKHTVPSYAYIF----REIKKPRLDVKKALKLGVKV 172
Query: 227 GKQIEKLKK---------SGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRA 271
G ++KLK+ S V D++L P+ +A++GDT +F R+ ++
Sbjct: 173 GPDLKKLKEGEAVKTENGSIVYPKDVLLPPKKGFCLAYSGDTLPLEDFGQFLRD---IKC 229
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVL 307
+LI EATF D+ + A+++ HT + E + A L
Sbjct: 230 DVLIHEATF--DDQCRDTARENMHTTIGEAVNIARL 263
>gi|124027542|ref|YP_001012862.1| metal-dependent hydrolase of beta lactamase, ElaC [Hyperthermus
butylicus DSM 5456]
gi|123978236|gb|ABM80517.1| Metal-dependent hydrolase of beta lactamase, ElaC [Hyperthermus
butylicus DSM 5456]
Length = 302
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 81/202 (40%), Gaps = 41/202 (20%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPP-SIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GLP + S G+ K P + P + + + F R L L
Sbjct: 58 IFITHLHGDHFFGLPGLLQSMGMLGRKTPLLVAGPRGLYGFLREAFRASRWLPG--FPLY 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSG 237
+ L+ GE + + + V F H IP+ GY + R+K + IEK ++ G
Sbjct: 116 VAELEPGEKLVLPSGLEVESFPVSHTIPAMGYRLVEPRRKPR--------INIEKARRLG 167
Query: 238 VE---------------ITDIILSPE----------VAFTGDTTSEFMLNPRNADALR-A 271
+E + I+ PE + +TGDT P +A R A
Sbjct: 168 IEPGPLLAKLQRGEPVTVAGRIVRPEEVVEEQPRAVIVYTGDTRP----CPTVVEAARNA 223
Query: 272 KILITEATFLDDEMSIEHAQQH 293
+LI +ATF + Q H
Sbjct: 224 TVLIHDATFTSSMAREAYEQGH 245
>gi|399576124|ref|ZP_10769881.1| rnase z [Halogranum salarium B-1]
gi|399238835|gb|EJN59762.1| rnase z [Halogranum salarium B-1]
Length = 310
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 103/255 (40%), Gaps = 46/255 (18%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F+TH H DHI G+P + S + I VPP
Sbjct: 35 FDCGEGTQRQMMRFNTGFNVSHLFVTHLHGDHILGIPGLIQSWDFNDRDAALAIHVPPGS 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
K+ +++L +H + +++ + G T + VR FKT+H SQGY I
Sbjct: 95 KKHIKRL--VHAGGYDPSYPVNIHEVSPGSTALDGEEFEVRTFKTNHRTRSQGYAIVEDD 152
Query: 212 ---YLLRKKLKKQYIHLKGKQIEKLKKS-GVEITD-IILSPE-----------VAFTGDT 255
R+K +++ G +L VE+ D ++ PE + +TGDT
Sbjct: 153 RPGRFDREKAEEELGIPPGPMYGRLHNGEAVELDDGRVIQPEQVVGDPRPGRKLVYTGDT 212
Query: 256 TSEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-------RQA 305
P A A A +LI +ATF DE H + D+ R A
Sbjct: 213 ------RPVQATVEMAEDADLLIHDATFASDESGRARQTYHSTAREAADVASRANVKRLA 266
Query: 306 VLKLQSKVSAKVVPL 320
+ + S+ + P+
Sbjct: 267 LTHISSRYAGDASPI 281
>gi|229916219|ref|YP_002884865.1| ribonuclease Z [Exiguobacterium sp. AT1b]
gi|259494134|sp|C4L3C2.1|RNZ_EXISA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|229467648|gb|ACQ69420.1| ribonuclease Z [Exiguobacterium sp. AT1b]
Length = 301
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 99/202 (49%), Gaps = 29/202 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASR-GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
V++TH H DH+ GLP ++++R L P T++ P +K+ +E + S ++ L
Sbjct: 56 VWVTHLHGDHVFGLPGFLSTRSALDGTAPLTVYGPKGLKKWLEATLRVTGS--HLGYELT 113
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------YLLRKKLKKQY------IHL 225
+ G+T+ +++D +V K H PS G+ I +LR L ++ I+
Sbjct: 114 VTEYSDGDTF-IQDDHLVTVRKLEHRFPSFGFRIDGPEKPGMLRVDLVRELGVPSGPIYR 172
Query: 226 KGKQIEKLKKSGVE------ITDIILSPEVAFTGDTTSEFMLNPRN-ADALRAKILITEA 278
K+ ++ + G +T+ I VA GDT N R AD A +L+ EA
Sbjct: 173 TIKESDRFEFEGKWYDSKEYVTEPIPGKIVAILGDTIP--CENARKLADG--ADLLVHEA 228
Query: 279 TFLDDEMSIEHAQQHGHTHLSE 300
TF++ E ++ A+++GH+ E
Sbjct: 229 TFMEAEQAL--ARKYGHSTTRE 248
>gi|337284253|ref|YP_004623727.1| ribonuclease Z [Pyrococcus yayanosii CH1]
gi|334900187|gb|AEH24455.1| ribonuclease Z [Pyrococcus yayanosii CH1]
Length = 299
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 44/208 (21%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L+N KP I+ P E V+ L RS G + D
Sbjct: 57 IFITHFHGDHYLGLAALIQTMNLWNRTKPLHIYGPEGSAEFVKNLL---RS-GYFKPAFD 112
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKL---- 233
+V ++GE + + F+ H IP+ GYV K + + H ++I KL
Sbjct: 113 VVIHEIGEVRLRFGEYEIWSFEVEHGIPALGYVF-----KERDRRGHFDLEKIRKLGLKP 167
Query: 234 --------KKSGVEITDIILSPE-----------VAFTGDT--TSEFMLNPRNADALRAK 272
++ VE++ + + E + ++GDT L R AD
Sbjct: 168 GPWMKVLEERGEVEVSGMRIRLEDVTGPKRRGIKIVYSGDTEPCERLKLFARRAD----- 222
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSE 300
+LI EAT++ + EH + HT + E
Sbjct: 223 LLIHEATYIRE----EHRRDSYHTTVEE 246
>gi|223477179|ref|YP_002581723.1| Ribonuclease Z [Thermococcus sp. AM4]
gi|214032405|gb|EEB73235.1| Ribonuclease Z [Thermococcus sp. AM4]
Length = 314
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 86/208 (41%), Gaps = 34/208 (16%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPS 154
FD+G R + +FITH H DH GL + + L+N KP I+ P
Sbjct: 34 FDVGEGTIRQMNTAKLSPMKVEKIFITHFHGDHYLGLGGLIQTMNLWNREKPLHIYGPKY 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
E V+ + G D+ ++GET + FK H IP+ GYV
Sbjct: 94 TFEFVQNFI----NSGFFRPVFDIHVHELGETRLKFKGYEIWSFKVEHGIPALGYVFREK 149
Query: 215 RKKLK------KQYIHLKGKQIEKLKKSG-VEITDIILSPE-----------VAFTGDTT 256
K+ K KQY G + KL++ G +E I+ E + +TGDT
Sbjct: 150 DKRGKFLPEKLKQYGLEPGPMLGKLEREGQIEWNGQIIRLEDVTGPRRRGVKIVYTGDTE 209
Query: 257 SEFMLNPRNADALRAKILITEATFLDDE 284
+ + RA +LI +AT+L DE
Sbjct: 210 P---VERVKLFSERADLLIHDATYLTDE 234
>gi|241896329|ref|ZP_04783625.1| ribonuclease Z [Weissella paramesenteroides ATCC 33313]
gi|241870309|gb|EER74060.1| ribonuclease Z [Weissella paramesenteroides ATCC 33313]
Length = 339
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 41/241 (17%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD+G R + Q+ + FITH H DHI GLP ++SR + TI+ P
Sbjct: 49 FDVGEGTQRQMLQSTIRPRKVTKIFITHLHGDHIYGLPGLLSSRSFQGGEDELTIYGPKG 108
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
I++ VE + ++ + + +D G+ + + V H I S GY +
Sbjct: 109 IRQFVEVSLRVSQTHLTYPIKFVELPVDGGDVLQT-DKFTVSALPLDHRITSFGYRVTEH 167
Query: 213 -----LLRKKLKK-------QYIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
LL ++L++ Y LK G + + D+I +P+ VA GDT
Sbjct: 168 AHPGELLVERLRELNVPAGPLYGQLKQGNDVTLADGRTIHGADVIGAPQPGRCVAIIGDT 227
Query: 256 --TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
T+ M RNAD +L+ E+T+ E + A+ H HT ++ A + Q++V
Sbjct: 228 RKTNNTMTLARNAD-----VLVHESTYGKGEG--KQARNHFHT---TSVQAATIAKQAQV 277
Query: 314 S 314
Sbjct: 278 G 278
>gi|289191998|ref|YP_003457939.1| ribonuclease Z [Methanocaldococcus sp. FS406-22]
gi|288938448|gb|ADC69203.1| ribonuclease Z [Methanocaldococcus sp. FS406-22]
Length = 320
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 52/225 (23%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI G+P + S G + K IF P KE +E ++ +E
Sbjct: 57 NHIFITHLHGDHILGIPGLLQSMGFFGREKELKIFGPEGTKEVIENSLKLGAHY--IEFP 114
Query: 176 LDLVALDVGETYEMRN----DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE 231
+ + + E + N +I+ P T H IPS Y+ K++KK + IE
Sbjct: 115 IKVYEIYAKEPITVYNEENYEIIAYP--TEHGIPSYAYIF----KEIKKPRL-----DIE 163
Query: 232 KLKKSGVEI-----------------------TDIILSPE----VAFTGDTT--SEFMLN 262
K KK GV+I D++L P+ +A++GDT +F
Sbjct: 164 KAKKLGVKIGPDLKKLKNGEAVKNIYGEIVKPEDVLLPPKKGFCLAYSGDTIPLEDF--- 220
Query: 263 PRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVL 307
+ L +LI EATF D+ S + A+++ H+ + + + A L
Sbjct: 221 GKYLKELGCDVLIHEATF--DDFSKDIAKENMHSTIGDAVNIAKL 263
>gi|282600416|ref|ZP_05974219.2| ribonuclease Z [Providencia rustigianii DSM 4541]
gi|282565280|gb|EFB70815.1| ribonuclease Z [Providencia rustigianii DSM 4541]
Length = 306
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 37/228 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P TI+ P +K+ +E + S + L+
Sbjct: 61 IFITHLHGDHIFGLPGLLCSRSMGGSTDPLTIYGPKGLKQYIETALSLSSSY--MTYPLE 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYI------- 223
++ ++ G+ ++ ++V + H + GY I L KL + I
Sbjct: 119 IIEIEEGQLFD-DGKLIVTAYSLDHRVECYGYRIEEYAKLGALNADKLARDNIPRGPWML 177
Query: 224 HLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
LK GKQI+ V TD + P VA GDT T +L ++AD + + +
Sbjct: 178 ALKQGKQIQLDDGREVNGTDYLEEPRKGKVVAIFGDTIPTPNALLLAKDADVMVHETTL- 236
Query: 277 EATFLDDEMSIEHAQQHGHTHLSED---IRQAVLK--LQSKVSAKVVP 319
EA F D A + GH+ + RQA +K + + +SA+ P
Sbjct: 237 EAEFED------KANERGHSTTRQAALLARQAGVKRFIATHISARYGP 278
>gi|445448066|ref|ZP_21443871.1| putative ribonuclease Z [Acinetobacter baumannii WC-A-92]
gi|444758249|gb|ELW82750.1| putative ribonuclease Z [Acinetobacter baumannii WC-A-92]
Length = 324
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 31/190 (16%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVAICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLY 110
Query: 174 LNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL--- 225
L L +DV E ++ ++ +V+ H +PS + IY+ ++KKL Q +
Sbjct: 111 LPYSLQFIDVNEATQPQQIIDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGV 170
Query: 226 -KGKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-A 271
KG LK+ VE IL + GD +L ADA + A
Sbjct: 171 PKGDMWGHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDA 226
Query: 272 KILITEATFL 281
++LI EAT+L
Sbjct: 227 QLLIHEATYL 236
>gi|222151400|ref|YP_002560556.1| hypothetical protein MCCL_1153 [Macrococcus caseolyticus JCSC5402]
gi|254808647|sp|B9E6P2.1|RNZ_MACCJ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|222120525|dbj|BAH17860.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 306
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 51/227 (22%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL--KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FI+H H DHI GLP + SR K T++ P +K+ V+ + I S ++ L
Sbjct: 59 IFISHLHGDHIFGLPGVLTSRSFQGGQDKKLTLYGPTGLKQFVDTVLTI--SCSHLNYPL 116
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKL----------- 218
+++ +D G+ + + NDI + H IPS GY I L+++KL
Sbjct: 117 EIIEIDHGDEFVI-NDIEITVGALKHGIPSFGYRIVMPDTAGNLIKEKLIAEGIAPGPVY 175
Query: 219 KKQYIH----LKGK--QIEKLKKSGVEITDIILSPEVAFTGDTT---SEFMLNPRNADAL 269
K+ +H L GK + K +G + ++ F GDT +E L NAD
Sbjct: 176 KEFKLHEQVTLNGKIYNTKDFKTAGKK------GKKLVFFGDTMPCENEVSL-AENAD-- 226
Query: 270 RAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAK 316
+++ E T+LD ++ + H ++ H+H+ + VL L S S K
Sbjct: 227 ---VVVHECTYLDGDVELSH--KYCHSHIDD-----VLSLVSSGSVK 263
>gi|310831449|ref|YP_003970092.1| putative metal-dependent hydrolase [Cafeteria roenbergensis virus
BV-PW1]
gi|309386633|gb|ADO67493.1| putative metal-dependent hydrolase [Cafeteria roenbergensis virus
BV-PW1]
Length = 265
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 14/209 (6%)
Query: 93 TCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVP 152
T + IPELK D G I + ITHGH DHI + + + N K I
Sbjct: 20 TGIFIPELKLQLDAGYYFGSDIDN--ILITHGHADHIKDITSIIHN----NTKKVNIICA 73
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY 212
+K +E + L ++ +N + + ++N I + F H + Y I
Sbjct: 74 KYLKPYLENYLHSYFQLNSLNMNNHTLNKKITWNNSIKN-IKIEMFPVKHSVKCVAYGII 132
Query: 213 LLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTT-SEFMLNPRNADALRA 271
+ KLK +I K++ ++KK IT+ I + E+ F D S L P +
Sbjct: 133 TITNKLKTIFIGKSIKELIEIKKHNT-ITESIDNKEILFATDLDHSSLKLLPFD----EY 187
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSE 300
K +I E TF +E +E A+ H H +
Sbjct: 188 KNIIIECTFYSEEHLVE-ARNRYHLHWVD 215
>gi|227514772|ref|ZP_03944821.1| ribonuclease Z [Lactobacillus fermentum ATCC 14931]
gi|227086881|gb|EEI22193.1| ribonuclease Z [Lactobacillus fermentum ATCC 14931]
Length = 310
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 90/202 (44%), Gaps = 39/202 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRS-----LGNV 172
+FITH H DHI GLP +++SR P TI+ P IK+ V+ ++ S L V
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIYGPKGIKDFVQTALKVSESRLSYPLKFV 118
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
EL D GE ++ + V + H I S GY + L+ +K+++
Sbjct: 119 ELTGD------GEVFKDQT-FTVTARRLDHKIASFGYRVEEAAHPGELMVEKVRQAGIPS 171
Query: 222 ---YIHLKGKQIEKL-KKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRA 271
Y LK ++ L V+ D I +P+ VA GDT T + + AD
Sbjct: 172 GPLYGQLKRGEVVTLPDGRTVDGHDFIGAPQPGRIVAILGDTRVTDNAVKLAKGAD---- 227
Query: 272 KILITEATFLDDEMSIEHAQQH 293
+L+ EATF +E + H H
Sbjct: 228 -VLVHEATFAKNEQRLAHNYYH 248
>gi|385812157|ref|YP_005848548.1| ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Lactobacillus fermentum CECT 5716]
gi|299783056|gb|ADJ41054.1| Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Lactobacillus fermentum CECT 5716]
Length = 310
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 90/202 (44%), Gaps = 39/202 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRS-----LGNV 172
+FITH H DHI GLP +++SR P TI+ P IK+ V+ ++ S L V
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIYGPKGIKDFVQTALKVSESRLSYPLKFV 118
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
EL D GE ++ + V + H I S GY + L+ +K+++
Sbjct: 119 ELTGD------GEVFKDQT-FTVTARRLDHKIASFGYRVEEAAHPGELMVEKVRQAGIPS 171
Query: 222 ---YIHLKGKQIEKL-KKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRA 271
Y LK ++ L V+ D I +P+ VA GDT T + + AD
Sbjct: 172 GPLYGQLKRGEVVTLPDGRTVDGHDFIGAPQPGRIVAILGDTRVTDNAVKLAKGAD---- 227
Query: 272 KILITEATFLDDEMSIEHAQQH 293
+L+ EATF +E + H H
Sbjct: 228 -VLVHEATFAKNEQRLAHNYYH 248
>gi|240103139|ref|YP_002959448.1| ribonuclease Z [Thermococcus gammatolerans EJ3]
gi|259494146|sp|C5A5S2.1|RNZ_THEGJ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|239910693|gb|ACS33584.1| Ribonuclease Z [Thermococcus gammatolerans EJ3]
Length = 314
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 84/207 (40%), Gaps = 34/207 (16%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPS 154
FD+G R + +FITH H DH GL + + L+N KP I+ P
Sbjct: 34 FDVGEGTIRQMNSAKLSPMRVEKIFITHFHGDHYLGLGGLIQTMNLWNREKPLHIYGPKY 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
E V+ + G ++ ++GET D + FK H IP+ GYV
Sbjct: 94 TFEFVQNFL----NSGFFRPGFEVHVHELGETRLKFKDYEIWSFKVEHGIPALGYVFKEK 149
Query: 215 RKKLK------KQYIHLKGKQIEKLKKSG-VEITDIILSPE-----------VAFTGDTT 256
K+ K QY G + KL+K G +E ++ E V +TGDT
Sbjct: 150 DKRGKFLPEKLAQYGLRPGPILGKLEKDGKIEWNGQVIRLEDVTGPRRRGVKVVYTGDTE 209
Query: 257 SEFMLNPRNADALRAKILITEATFLDD 283
A RA +LI +AT+L D
Sbjct: 210 P---CERVRLFAERADLLIHDATYLSD 233
>gi|184155103|ref|YP_001843443.1| beta-lactamase superfamily hydrolase [Lactobacillus fermentum IFO
3956]
gi|254808643|sp|B2GBD1.1|RNZ_LACF3 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|183226447|dbj|BAG26963.1| metal-dependent hydrolase of the beta-lactamase superfamily III
[Lactobacillus fermentum IFO 3956]
Length = 310
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 90/202 (44%), Gaps = 39/202 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRS-----LGNV 172
+FITH H DHI GLP +++SR P TI+ P IK+ V+ ++ S L V
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIYGPKGIKDFVQTALKVSESRLSYPLKFV 118
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
EL D GE ++ + V + H I S GY + L+ +K+++
Sbjct: 119 ELTGD------GEVFKDQT-FTVTARRLDHKIASFGYRVEEAAHPGELMVEKVRQAGIPS 171
Query: 222 ---YIHLKGKQIEKL-KKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRA 271
Y LK ++ L V+ D I +P+ VA GDT T + + AD
Sbjct: 172 GPLYGQLKRGEVVTLPDGRTVDGHDFIGAPQPGRIVAILGDTRVTDNAVKLAKGAD---- 227
Query: 272 KILITEATFLDDEMSIEHAQQH 293
+L+ EATF +E + H H
Sbjct: 228 -VLVHEATFAKNEQRLAHNYYH 248
>gi|160902038|ref|YP_001567619.1| beta-lactamase domain-containing protein [Petrotoga mobilis SJ95]
gi|160359682|gb|ABX31296.1| beta-lactamase domain protein [Petrotoga mobilis SJ95]
Length = 275
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+ +TH H+DHI GL V +R G N K I+ P + E L I + +
Sbjct: 44 IILTHSHVDHIAGLWGIVNTRNNAMGNRN-KKLEIYYPQGSENINEYLKFIGKMNKRLRY 102
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHV--IPSQGYVIYLLRKKLKKQYIHLKGKQIEK 232
+D + + +T + N ++PFKT H S GY I RK+LK++Y LK +I+
Sbjct: 103 EIDFREITLSDTIPLNNKRFIKPFKTRHTPGETSFGYQILEQRKRLKEEYRELKESEIKD 162
Query: 233 L 233
L
Sbjct: 163 L 163
>gi|11498544|ref|NP_069772.1| ribonuclease Z [Archaeoglobus fulgidus DSM 4304]
gi|41017520|sp|O29323.1|RNZ_ARCFU RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|2649658|gb|AAB90300.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 306
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 112/241 (46%), Gaps = 42/241 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH H DH GL + + L N + + V E + LFE + G +LN D+
Sbjct: 58 IFITHLHTDHFIGLFGLIETMSL-NERSRELNVYSPRAEVLRALFE---AFGYDQLNYDI 113
Query: 179 VALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQY------IH 224
++ + E++ D V F+T H++ S GY I R+K +K+ ++
Sbjct: 114 RVRELKDGEEVKFDGFKVVAFRTEHIVKSVGYAIIENDRRGKFNREKAEKELGIPPGPLY 173
Query: 225 LKGKQIEKLKKSGVEIT-DIILSP-----EVAFTGDT--TSEFMLNPRNADALRAKILIT 276
K + E + G IT D++L +V +TGD+ T + RNAD ILI
Sbjct: 174 AKLARGESIVWKGRTITPDMVLGEKRRGRKVVYTGDSRPTKRTVEIARNAD-----ILIH 228
Query: 277 EATFLDDEMSIEHAQQHGHT---HLSEDIRQAVLK------LQSKVSAKVVPLTEGFKSV 327
+A+F +E+ + A + GH+ +E R+A +K + ++ S PL E K V
Sbjct: 229 DASF-KEELK-DWAIESGHSTAKEAAEVAREANVKKLILTHISTRYSKDASPLLEEAKKV 286
Query: 328 Y 328
+
Sbjct: 287 F 287
>gi|448451148|ref|ZP_21592714.1| ribonuclease Z [Halorubrum litoreum JCM 13561]
gi|445811037|gb|EMA61050.1| ribonuclease Z [Halorubrum litoreum JCM 13561]
Length = 310
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 105/262 (40%), Gaps = 45/262 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF++H H DH+ G+P V + G + P T+ PP
Sbjct: 35 FDCGEGTQREMMRAGTGFAVDRVFVSHLHGDHVLGIPGLVQTLGFNDRTDPLTVHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ + L +H + + + + GE ++ VR F+T H SQGYV+
Sbjct: 95 DDHLHDL--VHAVGHDPAFPVRIEPVAPGEVAYETDEYEVRAFETEHRTVSQGYVLEEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R K + + + +G+ +E + VE ++ P ++ +T DT
Sbjct: 153 RPGRFDRPKAEALGVPVGPKFGRLHEGESVEAEDGTVVEPEQVVGPPRPGRKLVYTADT- 211
Query: 257 SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-------RQAV 306
PR A A A +LI +ATF DD H + I R A+
Sbjct: 212 -----RPREATVEAAKDADLLIHDATFADDMADRARDTAHSTGREAGSIADRADAKRLAL 266
Query: 307 LKLQSKVSAKVVPLTEGFKSVY 328
+ + S+ +A P+ + +
Sbjct: 267 VHISSRYAADARPIRRDAREAF 288
>gi|373856736|ref|ZP_09599480.1| ribonuclease Z [Bacillus sp. 1NLA3E]
gi|372453715|gb|EHP27182.1| ribonuclease Z [Bacillus sp. 1NLA3E]
Length = 311
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 91/212 (42%), Gaps = 26/212 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR + I+ P +KE + + ++ ++ L
Sbjct: 59 IFITHLHGDHIYGLPGLLSSRSFQGGETEVIIYGPKGLKEYITVSLSVSQTY--LKYPLK 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
++ +D G +E +V H IPS GY I LL KL + I K I
Sbjct: 117 VIEIDEGIIFE-DEQFIVETHVLEHGIPSYGYRIIEKDRPGTLLADKLAEAGI--KPGPI 173
Query: 231 EKLKKSGVEIT--DIILSPEVAFTGDTTS----EFMLNPRNAD-----ALRAKILITEAT 279
K K+G +T D + F G T + + R D A A +L+ EAT
Sbjct: 174 YKKIKNGENVTTEDGMFIKACEFLGQTLKGRIVTILGDTRQCDHAAKLATDADLLVHEAT 233
Query: 280 FLDDEMSIEHAQQHGHTHLSEDI--RQAVLKL 309
F E S+ + H TH + I R V KL
Sbjct: 234 FSKGEKSLAYDYFHSTTHQAAKIAKRAGVKKL 265
>gi|448427531|ref|ZP_21583846.1| ribonuclease Z [Halorubrum terrestre JCM 10247]
gi|445678218|gb|ELZ30712.1| ribonuclease Z [Halorubrum terrestre JCM 10247]
Length = 310
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 105/262 (40%), Gaps = 45/262 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF++H H DH+ G+P V + G + P T+ PP
Sbjct: 35 FDCGEGTQREMMRAGTGFAVDRVFVSHLHGDHVLGIPGLVQTLGFNDRTDPLTVHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ + L +H + + + + GE ++ VR F+T H SQGYV+
Sbjct: 95 DDHLHDL--VHAVGHDPAFPVRIEPVAPGEVAYETDEYEVRAFETEHRTVSQGYVLEEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R K + + + +G+ +E + VE ++ P ++ +T DT
Sbjct: 153 RPGRFDRPKAEALGVPVGPKFGRLHEGESVEAEDGTVVEPEQVVGPPRPGRKLVYTADT- 211
Query: 257 SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-------RQAV 306
PR A A A +LI +ATF DD H + I R A+
Sbjct: 212 -----RPREATVEAAEDADLLIHDATFADDMADRARDTAHSTGREAGSIADRADAKRLAL 266
Query: 307 LKLQSKVSAKVVPLTEGFKSVY 328
+ + S+ +A P+ + +
Sbjct: 267 VHISSRYAADARPIRRDAREAF 288
>gi|84489223|ref|YP_447455.1| ribonuclease Z [Methanosphaera stadtmanae DSM 3091]
gi|84372542|gb|ABC56812.1| putative ribonuclease Z [Methanosphaera stadtmanae DSM 3091]
Length = 281
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 118/268 (44%), Gaps = 55/268 (20%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G + I + + ++ITH H DHI GLP V S +P I+ P
Sbjct: 4 FDCGEATQKQIMEAGISPMKIDDIYITHLHGDHILGLPGIVQSLAFRGRTRPLHIYGPRG 63
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDV---GETYEMRNDIVVRPFKTHHVIPSQGYVI 211
I E ++ + R +G + +L+ ++ G Y+ +ND + K H + Y I
Sbjct: 64 INELIDHI----RHMGFYTIGYELITHEIEDDGILYQ-QNDFRILSRKMKHTVVDYAYKI 118
Query: 212 YLLR--KKLKKQYIHLK---GKQIEKLKKSGVEIT--DIILSPE-----------VAFTG 253
LR K L+++ I L G KL ++G E+T I+ PE V F+G
Sbjct: 119 EQLRQPKFLRQKAIELGIPPGPLFGKL-QAGKEVTVDGKIIKPEQVLGPPREGVKVVFSG 177
Query: 254 DTT-SEFMLN-PRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSED---------I 302
DT E M++ N D +LI EATF D E A ++GHT ++ED +
Sbjct: 178 DTIPQESMIDFAENVD-----VLIHEATFTKDIK--EKAFENGHT-VAEDAAVIAKKANV 229
Query: 303 RQAVLKLQSKVSAKVVPLTEGFKSVYTS 330
Q +L S PL + K+++ +
Sbjct: 230 EQLILTHLSNRYTSSKPLLDEAKTIFEN 257
>gi|403380617|ref|ZP_10922674.1| ribonuclease Z [Paenibacillus sp. JC66]
Length = 314
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
+ P + + N +F+TH H DH+ GLP ++ SRG P T++ P +K +E F I
Sbjct: 48 KSPLKMSKINKLFVTHLHGDHVYGLPGFLTSRGYQGGTSPFTLYGPKGVKTFIETAFSI- 106
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
S +VE L +V ++ G + V + H I S GY I
Sbjct: 107 -SDAHVEYELSIVEIEPGTIF-TDGQYTVHAERLEHRIESFGYRI 149
>gi|336477299|ref|YP_004616440.1| ribonuclease Z [Methanosalsum zhilinae DSM 4017]
gi|335930680|gb|AEH61221.1| ribonuclease Z [Methanosalsum zhilinae DSM 4017]
Length = 304
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 92/212 (43%), Gaps = 39/212 (18%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIH 166
R T + VFITH H DHI GLP + + KP I+ P +KE I
Sbjct: 46 RARTGMMSLTSVFITHFHADHILGLPGLIQTMSFQGRTKPLVIYGPAKVKE----FACIL 101
Query: 167 RSLGNVELNLDLVALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLK---KQ 221
++G L ++ A++V G+ + R+ V+ KT H +PS GY + + K +
Sbjct: 102 SNIGYYNLKFEIRAVEVHPGDIIK-RDGYSVKILKTEHSVPSVGYALVEDSRPGKFNRDR 160
Query: 222 YIHLK---GKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNA 266
I L G KL+ VE+ ++SP+ + ++GDT R +
Sbjct: 161 AIELGVPVGPLFSKLQNGIPVEVEGKVISPDEVIGPSRSGRTIVYSGDT--------RPS 212
Query: 267 DALR-----AKILITEATFLDDEMSIEHAQQH 293
D +R A +LI EAT D+++ H
Sbjct: 213 DDVRRISKGADLLIHEATLADEKLDWAIESMH 244
>gi|409723418|ref|ZP_11270668.1| ribonuclease Z [Halococcus hamelinensis 100A6]
gi|448722112|ref|ZP_21704651.1| ribonuclease Z [Halococcus hamelinensis 100A6]
gi|445790103|gb|EMA40773.1| ribonuclease Z [Halococcus hamelinensis 100A6]
Length = 309
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 104/248 (41%), Gaps = 45/248 (18%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF+TH H DH+ GLP + + + P T+ PP
Sbjct: 35 FDCGEGTQRQMMRFSTGFGVSHVFLTHLHGDHVLGLPGLTQTFDFNDREEPLTVHTPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR 215
K VE L + + + + G T +D VR F+T H S GY +
Sbjct: 95 KRAVENLVGVTGARPGYPVRVHEA--HPGATVLRNDDYEVRAFETDHRTQSVGYALVEDD 152
Query: 216 KKL---KKQYIHL---KGKQIEKLKKS-GVEITD-------IILSPE-----VAFTGDTT 256
++ +++ + L +G + +L + VE D ++ PE + +TGDT
Sbjct: 153 RRGRFDRERAVELGVPEGPKFSRLHRGESVEAEDGTTVDPEQVVGPERPGRTLVYTGDT- 211
Query: 257 SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
P A A A +LI EATF +D + A GH+ RQA ++ +
Sbjct: 212 -----RPTGATVEAATDADLLIHEATFAEDR--TDRAGSTGHS----TARQAA-EIAKRA 259
Query: 314 SAKVVPLT 321
AK + LT
Sbjct: 260 DAKRLALT 267
>gi|256847026|ref|ZP_05552472.1| ribonuclease Z [Lactobacillus coleohominis 101-4-CHN]
gi|256715690|gb|EEU30665.1| ribonuclease Z [Lactobacillus coleohominis 101-4-CHN]
Length = 313
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 88/199 (44%), Gaps = 33/199 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR P TI+ P IKE V+ + S L+
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGNEPLTIYGPVGIKEFVQTTLRVSES----RLSYP 114
Query: 178 LVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIY-------LLRKKLKK-------Q 221
+ +++ + ++ +D V K H I GY + L KLKK
Sbjct: 115 IKFVEITDDGQLFSDQTFTVYAKKLDHKIDCFGYRVVEHDHPGELQVDKLKKLGIPSGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALR--AKIL 274
Y LK GK+++ + + D I SP+ VA GDT +NA AL A +L
Sbjct: 175 YGQLKQGKEVQLNDGTILNGQDFIGSPQRGRIVAILGDTR-----KTKNAIALAKDADVL 229
Query: 275 ITEATFLDDEMSIEHAQQH 293
+ E+TF E + H H
Sbjct: 230 VHESTFGKGESKLAHNYYH 248
>gi|288556155|ref|YP_003428090.1| ribonuclease Z [Bacillus pseudofirmus OF4]
gi|288547315|gb|ADC51198.1| ribonuclease Z [Bacillus pseudofirmus OF4]
Length = 305
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 105/243 (43%), Gaps = 43/243 (17%)
Query: 101 KCAFDIGRC--------PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFV 151
+ FD G P + + +FITH H DHI GLP + SR L P I+
Sbjct: 33 QWLFDCGEATQHQLLHSPITLTKIDRIFITHLHGDHIFGLPGLMGSRSFQGALNPLIIYG 92
Query: 152 PPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
P + +E + ++ ++ +++ L+ G +E + + V +HV+PS + +
Sbjct: 93 PRGLAPFIETSLAVSKT--HLRYPYEVIELEEGLMFETEH-LSVEALALNHVMPSFAFKL 149
Query: 212 -------YLLRKKLKK-------QYIHLK-GKQIEKLKKSGVEITDIILSPE----VAFT 252
L KKL++ Y LK GK I + + + P+ V
Sbjct: 150 TEKDKPGTLDIKKLEEYNIPKGPHYQLLKEGKTITLEDGRKINGQEFVGPPKNGRIVVIA 209
Query: 253 GDT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQ 310
GDT T E + R+AD ILI EATF D+ +HA Q GH S + A L +
Sbjct: 210 GDTRPTKEMIKFSRDAD-----ILIHEATFRADKA--DHAVQFGH---STTLEAASLAKE 259
Query: 311 SKV 313
+KV
Sbjct: 260 AKV 262
>gi|398817209|ref|ZP_10575840.1| ribonuclease Z [Brevibacillus sp. BC25]
gi|398031011|gb|EJL24410.1| ribonuclease Z [Brevibacillus sp. BC25]
Length = 318
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 96/217 (44%), Gaps = 35/217 (16%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP--TIFVPPSIKEDVEKLFEI 165
R P + Q + +FITH H DH+ GL +ASR L N +P ++ PP + + + E
Sbjct: 47 RAPMKISQLDKIFITHLHGDHLYGLIGLLASRSLRNTEPTPLELYGPPGLDQYFRAIMEA 106
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK------KLK 219
S +++ L++ + G YE +IVV H +PS Y + K +L
Sbjct: 107 --SPVHLQYPLEIKIVSEGVIYE-DEEIVVSCRLAKHRVPSFAYAVMEKEKTGAFQVELA 163
Query: 220 KQYIHLKGKQIEKLKKSGVEIT----------DIILSPE----VAFTGDT--TSEFMLNP 263
KQ L G LK+ G ++T D + P+ + F+GDT + M
Sbjct: 164 KQAGVLSGPLFGALKR-GEQVTLEDGRVLDGKDFVGEPQPGRKIVFSGDTEPSQAVMELA 222
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
AD +L+ EAT+ + + A + GH+ E
Sbjct: 223 EGAD-----LLVHEATYAHHDKEL--ATRSGHSTARE 252
>gi|448622372|ref|ZP_21669066.1| ribonuclease Z [Haloferax denitrificans ATCC 35960]
gi|445754454|gb|EMA05859.1| ribonuclease Z [Haloferax denitrificans ATCC 35960]
Length = 317
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 108/261 (41%), Gaps = 43/261 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F+TH H DHI G+P + + + + I PP
Sbjct: 35 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLDFNDREASLAIHGPPGS 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
K +E L +H ++ + + G +D VR F T H S GY +
Sbjct: 95 KGHLETL--VHAGGYQPGFHVSIHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDTT 256
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 153 RPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGDTR 212
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQ-AVL 307
L+ A A +L+ +ATF D+E E A+Q H+ E D+R+ A+
Sbjct: 213 P---LDSTVEVARDADLLVHDATFTDEEA--ERAKQTAHSTAREAARIARDADVRRFALT 267
Query: 308 KLQSKVSAKVVPLTEGFKSVY 328
+ ++ +A PL E + VY
Sbjct: 268 HISARYAADPSPLLEQAREVY 288
>gi|448466727|ref|ZP_21599232.1| ribonuclease Z [Halorubrum kocurii JCM 14978]
gi|445813587|gb|EMA63564.1| ribonuclease Z [Halorubrum kocurii JCM 14978]
Length = 310
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 101/253 (39%), Gaps = 43/253 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSI 155
FD G R + + + +F++H H DH+ G+P V + G + +P T+ PP
Sbjct: 35 FDCGEGTQRGMMRYGTGFGIDHLFVSHLHGDHVLGIPGLVQTLGFNDRTEPLTVHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLD-----LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV 210
+D+ L + +D VALD + YE VR F+T H SQGY
Sbjct: 95 ADDLRDLVHAVGHDPAFRIRIDEVAPGAVALDA-DGYE------VRAFETTHRTKSQGYA 147
Query: 211 I-------YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
+ R K ++ + + G+ +E + VE ++ P T
Sbjct: 148 LEEDDRPGRFDRPKAEELGVPVGPKFGRLHAGEPVEAEDGTVVEPEQVVGPPRPGRTLVY 207
Query: 256 TSEFMLNPRNADALR-AKILITEATFLDDEMSIEHAQQHGHTHLSEDI-------RQAVL 307
T++ R + R A +L+ +ATF DD H + I R A++
Sbjct: 208 TADTRPRERTVEVARDADLLVHDATFADDMADRARDTAHSTGREAGSIAERAGAKRLALV 267
Query: 308 KLQSKVSAKVVPL 320
+ S+ +A P+
Sbjct: 268 HVSSRYAADATPI 280
>gi|433417601|ref|ZP_20404793.1| ribonuclease Z [Haloferax sp. BAB2207]
gi|448573598|ref|ZP_21641081.1| ribonuclease Z [Haloferax lucentense DSM 14919]
gi|432199965|gb|ELK56089.1| ribonuclease Z [Haloferax sp. BAB2207]
gi|445718504|gb|ELZ70194.1| ribonuclease Z [Haloferax lucentense DSM 14919]
Length = 317
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + ++ + PP
Sbjct: 35 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLD-FNDRDDSLAIHGPPG 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
K +E+L +H ++ + + G +D VR F T H S GY +
Sbjct: 94 SKGHLEQL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVED 151
Query: 212 ----YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 152 DRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGDT 211
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQ-AV 306
L+ A A +L+ +ATF D+E E A+Q H+ E D+R+ A+
Sbjct: 212 RP---LDSTVEVARDADLLVHDATFTDEEA--ERAKQTAHSTAREAARVARDADVRRFAL 266
Query: 307 LKLQSKVSAKVVPLTEGFKSVY 328
+ ++ +A PL E + VY
Sbjct: 267 THISARYAADPSPLLEQAREVY 288
>gi|403673429|ref|ZP_10935726.1| Ribonuclease Z [Acinetobacter sp. NCTC 10304]
Length = 324
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 33/191 (17%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVTICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLH 110
Query: 174 LNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------- 221
L L +DV E ++ ++ +V+ H +PS + IY+ ++KKL Q
Sbjct: 111 LPYSLQFIDVNEATQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGI 170
Query: 222 -----YIHLK-GKQIEKLKKSGVEITDIIL----SPEVAFTGDTTSEFMLNPRNADALR- 270
+ HLK G IE + ++ D I GD +L ADA +
Sbjct: 171 PQGDMWGHLKRGYNIE-FEGQTLKAQDFIKIQNHQVHAIIGGDNDQPKLL----ADACKD 225
Query: 271 AKILITEATFL 281
A++LI E+T+L
Sbjct: 226 AQLLIHESTYL 236
>gi|448597745|ref|ZP_21654670.1| ribonuclease Z [Haloferax alexandrinus JCM 10717]
gi|445739206|gb|ELZ90715.1| ribonuclease Z [Haloferax alexandrinus JCM 10717]
Length = 315
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + ++ + PP
Sbjct: 33 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLD-FNDRDDSLAIHGPPG 91
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
K +E+L +H ++ + + G +D VR F T H S GY +
Sbjct: 92 SKGHLEQL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVED 149
Query: 212 ----YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 150 DRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGDT 209
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQ-AV 306
L+ A A +L+ +ATF D+E E A+Q H+ E D+R+ A+
Sbjct: 210 RP---LDSTVEVARDADLLVHDATFTDEEA--ERAKQTAHSTAREAARVARDADVRRFAL 264
Query: 307 LKLQSKVSAKVVPLTEGFKSVY 328
+ ++ +A PL E + VY
Sbjct: 265 THISARYAADPSPLLEQAREVY 286
>gi|317049963|ref|YP_004117611.1| ribonuclease Z [Pantoea sp. At-9b]
gi|316951580|gb|ADU71055.1| ribonuclease Z [Pantoea sp. At-9b]
Length = 303
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 28/198 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + LK P TI+ P I++ ++ + S L+
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLKEPLTIYGPQGIRQFIDTALSLSGSY--TSFPLE 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYI-----HL 225
+V + G ++ D V + +H++ GY I +L +LK + + +
Sbjct: 116 IVEIAAGLVFD-DGDFRVTAWPMNHIVECYGYRIEQHDKPGFLDAPRLKAEGVPRGPWYQ 174
Query: 226 KGKQIEKLK-KSGVEITDI-ILSPE-----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
+ KQ E+++ + G EI L P VA GDT + AD A +++ E
Sbjct: 175 QLKQGERVRLEDGREINGAEYLGPATKGKVVAIFGDTGPTEVALQLAAD---ADVMVHET 231
Query: 279 TFLDDEMSIEHAQQHGHT 296
T + E A GH+
Sbjct: 232 TL--EAALAEKANSRGHS 247
>gi|296109876|ref|YP_003616825.1| ribonuclease Z [methanocaldococcus infernus ME]
gi|295434690|gb|ADG13861.1| ribonuclease Z [Methanocaldococcus infernus ME]
Length = 309
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 36/202 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI G+P + S + I+ P IKE V E+ ++ G + +
Sbjct: 57 IFITHLHGDHILGIPGIIQSLSFMGRTQKLEIYGPKGIKEIV----EMAKNFGYNCIEYE 112
Query: 178 LVALDVGETYEMR----NDIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHLKG 227
+ ++ + E++ D + T H IPS Y+ ++K K K+ I + G
Sbjct: 113 VEVKEIKKNKEVKILEEKDFCFYAYPTKHYIPSYAYIFKEIKKPRLDINKAKELGIKV-G 171
Query: 228 KQIEKLKKSGVEITDI----------ILSPE----VAFTGDT--TSEFMLNPRNADALRA 271
++KLK+ G+ + +I +L P+ VA++GDT +F L +N D
Sbjct: 172 PDLKKLKE-GIPVKNIHGETIFPEQVLLPPKRGICVAYSGDTLPIEDFALFLKNLD---C 227
Query: 272 KILITEATFLDDEMSIEHAQQH 293
+LI EATF E S+ H
Sbjct: 228 SLLIHEATFDSSEKSLAEETYH 249
>gi|448434420|ref|ZP_21586230.1| ribonuclease Z [Halorubrum tebenquichense DSM 14210]
gi|445685336|gb|ELZ37691.1| ribonuclease Z [Halorubrum tebenquichense DSM 14210]
Length = 309
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 38/210 (18%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F++H H DH+ GLP V + G + P T+ PP
Sbjct: 35 FDCGEGTQREMMRAGTGFAVDRIFVSHLHGDHVLGLPGLVQTLGFNDRTDPLTVHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ + L +H + + + + GE ++ VR F+T H SQGYV+
Sbjct: 95 DDHLRNL--VHAVGHDPAFPVRIEPVAPGEVAYETDEYAVRAFETEHRTVSQGYVLAEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R K ++ + + +G+ +E + V+ ++ P ++ +T DT
Sbjct: 153 RPGRFDRPKAEELGVPVGPKFGRLHEGESVEAEDGTVVDPEQVVGPPRPGRKLVYTADT- 211
Query: 257 SEFMLNPRNAD---ALRAKILITEATFLDD 283
PR + A A +LI +ATF DD
Sbjct: 212 -----RPRESTVEAAADADLLIHDATFADD 236
>gi|299769381|ref|YP_003731407.1| Ribonuclease Z [Acinetobacter oleivorans DR1]
gi|298699469|gb|ADI90034.1| Ribonuclease Z [Acinetobacter oleivorans DR1]
Length = 324
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 31/190 (16%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVAICITHIHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLH 110
Query: 174 LNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------- 221
L+ L +DV E ++ ++ +V+ H +PS + IY+ ++KKL Q
Sbjct: 111 LSYSLQFIDVNEVIKPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDIQTLTQLGV 170
Query: 222 -----YIHLKGKQIEKLKKSGVEITDII----LSPEVAFTGDTTSEFMLNPRNADALR-A 271
+ HLK + + ++ D I GD +L ADA + A
Sbjct: 171 PQGDMWGHLKRGYNVEFEGQTLKAQDFIKIQNQQVHAIIGGDNDQPELL----ADACKDA 226
Query: 272 KILITEATFL 281
++LI E+T+L
Sbjct: 227 QLLIHESTYL 236
>gi|20091849|ref|NP_617924.1| ribonuclease Z [Methanosarcina acetivorans C2A]
gi|41017565|sp|Q8TLK5.1|RNZ_METAC RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|19917040|gb|AAM06404.1| metallo-beta-lactamase [Methanosarcina acetivorans C2A]
Length = 305
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 111/254 (43%), Gaps = 46/254 (18%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHR 167
R T + + +F++H H DH G+P + + K P + P+ + +LF +
Sbjct: 46 RAKTGMMSLSSIFVSHFHADHFLGIPGLIQTMSFMGRKDPLMIYGPAGTREFTELF---K 102
Query: 168 SLGNVELNLDLVALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
+LG L ++ +++ G+ E VVR +T H PS GY L+ ++
Sbjct: 103 ALGYFNLKYEIHGMELKPGDVVEGEG-YVVRALETEHSTPSLGYA--LIENPRPGRFNRE 159
Query: 226 K--------GKQIEKLKKSG-VEITDIILSPE-----------VAFTGDTT-SEFMLNP- 263
K G KL+K VE ++ PE + ++GDT E +L
Sbjct: 160 KAVALGVPPGPLFSKLQKGNPVEAGGKVVRPEEVMGTPRPGRTIVYSGDTRPCEAVLEAS 219
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQAVLK-LQSKVS 314
R+AD +LI + +F DEM+ E A++ H+ E +R+ VL + S+ +
Sbjct: 220 RDAD-----LLIHDGSFA-DEMA-EWAEESMHSTAGEVAALAKEAGVRKLVLTHISSRYT 272
Query: 315 AKVVPLTEGFKSVY 328
V P+ + K V+
Sbjct: 273 DDVEPILKDSKKVF 286
>gi|442805116|ref|YP_007373265.1| ribonuclease Z [Clostridium stercorarium subsp. stercorarium DSM
8532]
gi|442740966|gb|AGC68655.1| ribonuclease Z [Clostridium stercorarium subsp. stercorarium DSM
8532]
Length = 304
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 88/205 (42%), Gaps = 35/205 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV-PPSIKEDVEKLFEIHRSLGNVELNLD 177
V +TH H DH+ GLP + + G P I + PP +K+ VE L I L L
Sbjct: 57 VLLTHYHGDHVAGLPGLLLTIGNSGRTEPLILMGPPGLKKVVEGLTVIAPEL---PYALQ 113
Query: 178 LVALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHLKGKQI 230
+V L + E R N +V+R H I Y ++L R+ K +K I ++
Sbjct: 114 IVELPEDKISENRLNGLVIRSIPADHTITCLSYCVFLKRQGKFDVEKAEKLSIPVR---Y 170
Query: 231 EKLKKSGVEIT--------DIILSPE-----VAFTGDT--TSEFMLNPRNADALRAKILI 275
KL ++G E+ +++L PE V + DT T + R+AD +LI
Sbjct: 171 YKLLQNGCEVKIGDRVIKPEMVLGPERKGIKVCYCTDTRPTESLVEFVRDAD-----LLI 225
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSE 300
E + +E E A Q H E
Sbjct: 226 CEGMYGSNE-DFEKAAQKKHMTFPE 249
>gi|448543944|ref|ZP_21625405.1| ribonuclease Z [Haloferax sp. ATCC BAA-646]
gi|448558521|ref|ZP_21633078.1| ribonuclease Z [Haloferax sp. ATCC BAA-644]
gi|445706086|gb|ELZ57973.1| ribonuclease Z [Haloferax sp. ATCC BAA-646]
gi|445712273|gb|ELZ64055.1| ribonuclease Z [Haloferax sp. ATCC BAA-644]
Length = 317
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 111/262 (42%), Gaps = 45/262 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + ++ + PP
Sbjct: 35 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLD-FNDRDASLAIHGPPG 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
K +E L +H ++ + + G +D VR F T H S GY +
Sbjct: 94 SKRHLETL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVED 151
Query: 212 ----YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 152 DRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGDT 211
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQ-AV 306
L+ A A +L+ +ATF D+E E A+Q H+ E D+R+ A+
Sbjct: 212 RP---LDSTVEVARDADLLVHDATFTDEEA--ERAKQTAHSTAREAARIARDADVRRFAL 266
Query: 307 LKLQSKVSAKVVPLTEGFKSVY 328
+ ++ +A PL E + VY
Sbjct: 267 THVSARYAADPSPLLEQAREVY 288
>gi|448551104|ref|ZP_21629246.1| ribonuclease Z [Haloferax sp. ATCC BAA-645]
gi|445710660|gb|ELZ62458.1| ribonuclease Z [Haloferax sp. ATCC BAA-645]
Length = 315
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 111/262 (42%), Gaps = 45/262 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + ++ + PP
Sbjct: 33 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLD-FNDRDASLAIHGPPG 91
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
K +E L +H ++ + + G +D VR F T H S GY +
Sbjct: 92 SKRHLETL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVED 149
Query: 212 ----YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 150 DRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGDT 209
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQ-AV 306
L+ A A +L+ +ATF D+E E A+Q H+ E D+R+ A+
Sbjct: 210 RP---LDSTVEVARDADLLVHDATFTDEEA--ERAKQTAHSTAREAARIARDADVRRFAL 264
Query: 307 LKLQSKVSAKVVPLTEGFKSVY 328
+ ++ +A PL E + VY
Sbjct: 265 THVSARYAADPSPLLEQAREVY 286
>gi|305681289|ref|ZP_07404096.1| ribonuclease Z [Corynebacterium matruchotii ATCC 14266]
gi|305659494|gb|EFM48994.1| ribonuclease Z [Corynebacterium matruchotii ATCC 14266]
Length = 307
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 96/216 (44%), Gaps = 34/216 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DH GLP +++SR P TI+ PP I E V ++ S ++ L+
Sbjct: 58 VFITHMHGDHTFGLPGFISSRAFRTPGDPLTIYGPPGIAEFVS--VTLNTSASHIRYPLE 115
Query: 178 LVALD-VGETYEMRNDIV-VRPFKTHHVIPSQGYVIYLLRKKLKKQ-------------- 221
+V LD GE R+D V VR H + S Y I + + Q
Sbjct: 116 VVELDHAGEVPLGRDDTVTVRYTTLDHGVQSYAYRITEADQPGELQVDKLIDHGVQPGPC 175
Query: 222 YIHLK-GKQIEKLKKSGVEITDII----LSPEVAFTGDTTSEFMLNPRNAD-ALRAKILI 275
Y LK G+ I + + D + P++ GDT P +AD A A +++
Sbjct: 176 YGQLKRGEDITLDNGTVLRSADFVGPPQSGPDIVLFGDT----RFVPGHADFAAGADLMV 231
Query: 276 TEATFLDDEMSIEHAQQHGH---THLSEDIRQAVLK 308
EAT+ + + AQ++ H T +E RQA +K
Sbjct: 232 HEATYGPE--YPDKAQKYFHSTTTQAAELARQAGVK 265
>gi|421626628|ref|ZP_16067457.1| putative ribonuclease Z [Acinetobacter baumannii OIFC098]
gi|408695899|gb|EKL41454.1| putative ribonuclease Z [Acinetobacter baumannii OIFC098]
Length = 324
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 33/191 (17%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVAICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLY 110
Query: 174 LNLDLVALDVGETY---EMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------- 221
L L +DV E ++ ++ +V+ H +PS + IY+ ++KKL Q
Sbjct: 111 LPYSLQFIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGI 170
Query: 222 -----YIHLK-GKQIEKLKKSGVEITDIIL----SPEVAFTGDTTSEFMLNPRNADALR- 270
+ HLK G IE + ++ D I GD +L ADA +
Sbjct: 171 PQGDMWGHLKRGYNIE-FEGQTLKAQDFIKIQNHQVHAIIGGDNDQPELL----ADACKD 225
Query: 271 AKILITEATFL 281
A++LI E+T+L
Sbjct: 226 AQLLIHESTYL 236
>gi|295098087|emb|CBK87177.1| RNAse Z [Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 305
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + N P TI+ P I+E VE + S + L +
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNANPLTIYGPAGIQEFVETTLRLSGSWTDYPLEV- 118
Query: 178 LVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVI 211
L++GE + D +VR + +H + GY +
Sbjct: 119 ---LEIGEGLVFDDGDYLVRAYPLNHPVECYGYRV 150
>gi|88604120|ref|YP_504298.1| beta-lactamase-like protein [Methanospirillum hungatei JF-1]
gi|88189582|gb|ABD42579.1| beta-lactamase-like protein [Methanospirillum hungatei JF-1]
Length = 445
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
V ++HGHLDHIG +P V + P I P +I E V++ E + G +N L
Sbjct: 77 VILSHGHLDHIGAVPKLV-----HRYNAPIIGTPYTI-ELVKQQIEGEKKFG---VNNKL 127
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPS---------QGYVIYLLRKKLKKQYIHLKGKQ 229
+AL G+ Y + N + + +T H I +G ++Y L KL + + +
Sbjct: 128 IALKCGQRYNISNTLGMEFVRTQHSIIDTATVALYTPKGAIVYALDFKLDRNPVLGEPPD 187
Query: 230 IEKLKKSGVE 239
KLKK G E
Sbjct: 188 FAKLKKIGKE 197
>gi|421674626|ref|ZP_16114555.1| putative ribonuclease Z [Acinetobacter baumannii OIFC065]
gi|421691694|ref|ZP_16131353.1| putative ribonuclease Z [Acinetobacter baumannii IS-116]
gi|404562303|gb|EKA67527.1| putative ribonuclease Z [Acinetobacter baumannii IS-116]
gi|410383926|gb|EKP36445.1| putative ribonuclease Z [Acinetobacter baumannii OIFC065]
Length = 324
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 33/191 (17%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVTICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQEWFEITAQLTDLH 110
Query: 174 LNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------- 221
L L +DV E ++ ++ +V+ H +PS + IY+ ++KKL Q
Sbjct: 111 LPYSLQFIDVNEATQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGI 170
Query: 222 -----YIHLK-GKQIEKLKKSGVEITDIIL----SPEVAFTGDTTSEFMLNPRNADALR- 270
+ HLK G IE + ++ D I GD +L ADA +
Sbjct: 171 PQGDMWGHLKRGYNIE-FEGQTLKAQDFIKIQNHQVHAIIGGDNDQPKLL----ADACKD 225
Query: 271 AKILITEATFL 281
A++LI E+T+L
Sbjct: 226 AQLLIHESTYL 236
>gi|295110706|emb|CBL24659.1| RNAse Z [Ruminococcus obeum A2-162]
Length = 303
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 36/207 (17%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ + TH H DHI GLP + + G + P V P + +E++ R + EL
Sbjct: 55 DVICFTHYHGDHISGLPGLLLTMGNADRTEPLTLVGP---KGLERVVNALRVIAP-ELPF 110
Query: 177 DLVALDVGETYEM--RNDIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHL--- 225
++ ++V + +E+ N + F+ +H + GY I +LR+ + ++Q I L
Sbjct: 111 EIKFIEVTKPFEVLELNGYRINAFRVNHNVICYGYTIEILRQGKFSPERAREQEIPLKYW 170
Query: 226 ----KGKQIEKLKKSGVEIT-DIILSPE-----VAFTGDT--TSEFMLNPRNADALRAKI 273
KG+ IE GV T D++L P+ V +T DT T + N N+D +
Sbjct: 171 NPLQKGRTIE---ADGVVYTPDMVLGPDRKGIKVTYTTDTRPTESILRNAVNSD-----L 222
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSE 300
I E + +E IE A+ + H E
Sbjct: 223 FICEGMY-GEEDKIEKAKGYKHMTFRE 248
>gi|70607049|ref|YP_255919.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius DSM 639]
gi|449067284|ref|YP_007434366.1| ribonuclease Z [Sulfolobus acidocaldarius N8]
gi|449069555|ref|YP_007436636.1| ribonuclease Z [Sulfolobus acidocaldarius Ron12/I]
gi|76363385|sp|Q4J9A4.1|RNZ_SULAC RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|68567697|gb|AAY80626.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius DSM 639]
gi|449035792|gb|AGE71218.1| ribonuclease Z [Sulfolobus acidocaldarius N8]
gi|449038063|gb|AGE73488.1| ribonuclease Z [Sulfolobus acidocaldarius Ron12/I]
Length = 292
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 34/205 (16%)
Query: 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
++ N + I+H H DH+ GLP + + +Y+ + + + P+ +D K H
Sbjct: 51 MKLNLIGISHLHGDHVLGLPGIIQTMAMYSRQQKLLLMGPTTLQDYLKSSSKHTYF-KPG 109
Query: 174 LNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHLKG 227
+ + ++YE +N + + F+T H I S G++I K +LKK+ I
Sbjct: 110 FETEFI-----QSYEDQN-LTITTFRTCHTIESYGFLIKEKDKTKVDAERLKKEGI-TDW 162
Query: 228 KQIEKLKKSG-VEITDIILSPE----------VAFTGDTT-SEFMLNPRNADALRAKILI 275
+ I KLK+ VEI + PE +A+TGDT + +LN +LI
Sbjct: 163 RIIRKLKEGKRVEIDTKVFLPEDYLYVKKGLSIAYTGDTAPCDSVLNAIKG----VDLLI 218
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSE 300
++TFL++ A +GH++ ++
Sbjct: 219 HDSTFLNE----REAHDYGHSNCTD 239
>gi|433463317|ref|ZP_20420874.1| ribonuclease Z [Halobacillus sp. BAB-2008]
gi|432187616|gb|ELK44884.1| ribonuclease Z [Halobacillus sp. BAB-2008]
Length = 308
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 28/196 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR + P T++ P +KE ++ + + S ++ L
Sbjct: 59 IFITHLHGDHIYGLPGLLSSRSFQGGESPVTVYGPAGLKEYID--WSLRLSGTHLRYPLR 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + G +E + +V K H + S GY++ L +LK+ Y
Sbjct: 117 VVEVKEGMLFE-DDQFIVEAVKLQHGLESYGYLLKEKDRLGELQPHRLKELGIQPGPIYQ 175
Query: 224 HLKGKQIEKLKKSGVEITDIILSP-----EVAFTGDTTSEFMLNPRNADALR-AKILITE 277
+K ++ +L+ V +L P ++A GDT P AD L+ +L+ E
Sbjct: 176 TIKEQETTRLEDGRVIHRSDVLGPAEKGRKLAILGDTR----YLPSLADKLQLVDVLVHE 231
Query: 278 ATFLDDEMSIEHAQQH 293
ATF DE + + H
Sbjct: 232 ATFAGDEEQMAYDYYH 247
>gi|403668163|ref|ZP_10933440.1| ribonuclease Z [Kurthia sp. JC8E]
Length = 318
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 92/215 (42%), Gaps = 31/215 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLG-NVELNL 176
+FITH H DHI GLP ++ SR P TI+ P IKE VE +R G ++ +
Sbjct: 59 IFITHLHGDHIFGLPGFLGSRSFLGGDTPLTIYGPTGIKEWVEM---TNRLTGTHLTYPI 115
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLK-----KQYIHL---KGK 228
V + G +E V HVIP GY + +K L ++ I L KG
Sbjct: 116 HFVEVTDGVVFEDEQFCVTAKL-LEHVIPCYGYRVE--QKPLSGALDLEKAISLGVPKGP 172
Query: 229 QIEKLKKS---------GVEITDIILSPEVAFTGDTTSEFMLNPRNAD-ALRAKILITEA 278
+ +LK V D+ +P FT + A+ A A ILI EA
Sbjct: 173 LLGQLKAGEAVRLEDGRTVYSEDVTGAPVQGFTVTILGDTRFCESAAELAQNATILIHEA 232
Query: 279 TFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
TF D + A Q+GH S ++ A + Q+ V
Sbjct: 233 TF--DASTANLASQYGH---STNVDAATIAEQANV 262
>gi|366089332|ref|ZP_09455805.1| ribonuclease Z [Lactobacillus acidipiscis KCTC 13900]
Length = 317
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 100/234 (42%), Gaps = 45/234 (19%)
Query: 96 IIPELK--CAFDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLK 145
++PE+ FD G R R + +FITH H DHI GLP +++SR N
Sbjct: 26 LLPEINEVWLFDCGEATQHQILRTTIRPRKITKIFITHLHGDHIFGLPGFLSSRSFQNGD 85
Query: 146 PP---TIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFK-T 200
P TI+ P I++ V+ + R+ +LN +++GE ++ ND FK
Sbjct: 86 DPTTLTIYGPAGIEDFVKTSLRVSRTKLAYKLNF----IELGEAGQIFENDRFKVSFKYL 141
Query: 201 HHVIPSQGYVI-------YLLRKKLKKQ-------YIHLK-GKQIEKLKKSGVEITDIIL 245
H IP GY + L +KLK+ Y LK G+ + + TD I
Sbjct: 142 EHRIPCVGYRVEEKDYPGELQVEKLKELQVPAGPIYGRLKAGETVTLADGRQINGTDFIG 201
Query: 246 SPE----VAFTGDTTSEFMLN--PRNADALRAKILITEATFLDDEMSIEHAQQH 293
S + V GDT S + NADA L+ E+T+ + + A H
Sbjct: 202 SAKKGRIVTILGDTRSTPNIEKLAANADA-----LVHESTYGKGDAKLARAYYH 250
>gi|347549375|ref|YP_004855703.1| hypothetical protein LIV_1958 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982446|emb|CBW86444.1| Putative unknown protein [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 306
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 96/228 (42%), Gaps = 36/228 (15%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R + + F+FITH H DHI GLP ++SR TI+ PP I+E +E
Sbjct: 48 RSQIKLSKLEFIFITHMHGDHIFGLPGLLSSRSFQGGDSDLTIYGPPGIREYIETSLR-- 105
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDI-VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
L L ++ ++G +++ + + H + S GY I K+ L
Sbjct: 106 --LSGTRLTYKIIFAEIGPGVIFEDEMFAITADELEHGMQSFGYRIVEKDKQGALNAAKL 163
Query: 226 KGKQIE------KLKKS-------GVEI--TDIILSPE----VAFTGD---TTSEFMLNP 263
K +E KLK G EI + I +P+ ++ GD T SEF L
Sbjct: 164 KADGVEPGPVFQKLKNGEIVTLPDGREIDGKNYIGNPQKGKIISIFGDTRATASEFRL-A 222
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI--RQAVLKL 309
NAD +L+ EATF D+ + H T + ++ R V KL
Sbjct: 223 ENAD-----VLVHEATFEGDKGKMAAEYMHSTTVQAAELAKRAGVKKL 265
>gi|386002471|ref|YP_005920770.1| Ribonuclease Z [Methanosaeta harundinacea 6Ac]
gi|357210527|gb|AET65147.1| Ribonuclease Z [Methanosaeta harundinacea 6Ac]
Length = 305
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 101/256 (39%), Gaps = 50/256 (19%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R T + + +FITH H DHI G+P + + + P TI PP
Sbjct: 34 FDCGEGTQRQMMRAKTGMMSLDTIFITHHHADHILGIPGLLETMAFQGRRDPVTIAGPPR 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
E VE + + + + + L+ G+ R+ + +T H IPS GY L
Sbjct: 94 TSEVVELFGRL--CYYSRKFPVRALELEPGDVLR-RDGYEIEAVRTSHSIPSLGYC---L 147
Query: 215 RKKLKKQYIHLK---------GKQIEKLKKSG-VEITDIILSPE-----------VAFTG 253
R+ + + + G +L++ G VE+ + PE + +TG
Sbjct: 148 REDTRPGRFNRERASALGIPPGPLFGRLQRGGAVEVGGRTVRPEEVMGPPRPGRKIVYTG 207
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA-------- 305
DT P +A R L+ LDD M+ + A + HT E R A
Sbjct: 208 DTRP----TPEVEEASRGADLLIHDGSLDDGMA-DWAAETMHTTAGEAARLAERAGARRL 262
Query: 306 -VLKLQSKVSAKVVPL 320
+ + S+ S V PL
Sbjct: 263 VLTHISSRYSDDVGPL 278
>gi|322368157|ref|ZP_08042726.1| ribonuclease Z [Haladaptatus paucihalophilus DX253]
gi|320552173|gb|EFW93818.1| ribonuclease Z [Haladaptatus paucihalophilus DX253]
Length = 308
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 40/214 (18%)
Query: 101 KCAFDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVP 152
+ FD G R + + + +FITH H DHI G+P V + + P I+ P
Sbjct: 32 RLLFDAGEGTQRQMMRFGTGFTVSDLFITHLHGDHILGIPGLVQTWDFNDRDDPLMIYTP 91
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY 212
+D++ L + +++ VA GE R++ VR F+T H S GY
Sbjct: 92 RGTGDDIDALVRTAGHQPSFPIHITEVA--PGEVAIRRDEYEVRTFRTDHDANSLGYA-- 147
Query: 213 LLRKKLKKQYIHLK--------GKQIEKLKKSG-VEITD-IILSPE-----------VAF 251
L+ + K ++ + G + ++L VE+ D ++ PE +
Sbjct: 148 LVEDERKGRFDRERAEELGVPVGPKFQQLHAGNPVELDDGTVVRPEQVVGEPRPGRRFVY 207
Query: 252 TGDT--TSEFMLNPRNADALRAKILITEATFLDD 283
TGDT T + + NAD +L+ +ATF DD
Sbjct: 208 TGDTRPTEQVVSEAENAD-----LLVHDATFADD 236
>gi|23099311|ref|NP_692777.1| hypothetical protein OB1856 [Oceanobacillus iheyensis HTE831]
gi|41017560|sp|Q8EQ58.1|RNZ_OCEIH RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|22777540|dbj|BAC13812.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 306
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FITH H DHI GLP +++SR + +P I+ P IKE VE + ++ + +
Sbjct: 59 IFITHLHGDHIYGLPGFLSSRSFQSGENQPLCIYGPIGIKEFVESTLRLSQTNLTYPITI 118
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK-------QY 222
+ D G +E N+++V K H I S GY I LL KLK+ Y
Sbjct: 119 KEITED-GNLFET-NEMMVETKKLQHGIDSYGYRIKEKDKPGELLVDKLKQIGIAPGPIY 176
Query: 223 IHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNP--RNADALRAKILI 275
+K +I L + + +L P ++ GDT P + +D IL+
Sbjct: 177 QQIKENEITTLDNGSIIYRNDVLGPAKKGKVISILGDTRYSIDHIPFIKFSD-----ILV 231
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS 314
E+TF D+ + H S +++ A L ++ ++
Sbjct: 232 HESTFTQDKELLAFEYNH-----STNVQAAKLAKEANIN 265
>gi|311030610|ref|ZP_07708700.1| ribonuclease Z [Bacillus sp. m3-13]
Length = 306
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 87/191 (45%), Gaps = 32/191 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR P T++ P IKE +E + S+ +V+ L
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGDTPLTVYGPVGIKEYIETSLRV--SMTHVKYPLI 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ + + D ++ K H IPS G+ I LL K+K+ I G +
Sbjct: 117 IEEFEEDGLFLEEEDFTIKGKKLVHGIPSFGFRIIQKDLPGALLMDKVKQSNIP-SGPHL 175
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLNPRNAD-ALRAKILI 275
+KLK+ G IT D I P+ + GDT P + + A A +LI
Sbjct: 176 QKLKE-GKSITLSDGRIVVGKDFIGPPKKGKVITILGDTR----YTPVSVELAEAADVLI 230
Query: 276 TEATF-LDDEM 285
EATF DEM
Sbjct: 231 HEATFAAKDEM 241
>gi|15669696|ref|NP_248509.1| hypothetical protein MJ_1502 [Methanocaldococcus jannaschii DSM
2661]
gi|1592137|gb|AAB99515.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 324
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 38/218 (17%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI G+P + S G + K IF P KE +E ++ +E
Sbjct: 64 NHIFITHLHGDHILGIPGLLQSMGFFGREKELKIFGPEGTKEIIENSLKLGTHY--IEFP 121
Query: 176 LDLVALDVGE---TYEMRN-DIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHL 225
+ + + E Y+ N +I+ P T H IPS Y+ ++K K KK + +
Sbjct: 122 IKVYEIYTKEPITIYKEENYEIIAYP--TEHGIPSYAYIFKEIKKPRLDIEKAKKLGVKI 179
Query: 226 KGKQIEKLKKSGVEITDI---ILSPE-----------VAFTGDT--TSEFMLNPRNADAL 269
G ++KL K+G + +I I+ PE +A++GDT +F + L
Sbjct: 180 -GPDLKKL-KNGEAVKNIYGEIIKPEYVLLPPKKGFCLAYSGDTLPLEDF---GKYLKEL 234
Query: 270 RAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVL 307
+LI EATF D+ + + A+++ H+ + + + A L
Sbjct: 235 GCDVLIHEATF--DDSAKDAAKENMHSTIGDAVNIAKL 270
>gi|448476244|ref|ZP_21603408.1| ribonuclease Z [Halorubrum aidingense JCM 13560]
gi|445815793|gb|EMA65712.1| ribonuclease Z [Halorubrum aidingense JCM 13560]
Length = 310
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 104/262 (39%), Gaps = 45/262 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F++H H DH+ G+P V + G + P TI PP
Sbjct: 35 FDCGEGTQRGMMRYGTGFGIDHLFVSHLHGDHVLGIPGLVQTLGFNDRAEPLTIHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+D+ +L +H + ++ + + GE + VR F+T H SQGYV+
Sbjct: 95 ADDLHEL--VHAVGHDPAFHVRIEPVAPGEVALDADGYAVRAFETTHRTKSQGYVLDEAD 152
Query: 212 ---YLLRKKLKKQYIHLKGKQIEKLKKSGVEITD-IILSPE-----------VAFTGDTT 256
R K ++ + + K VE D ++ PE + +T DT
Sbjct: 153 RPGRFDRPKAEELGVPVGPKFGRLHAGEPVEAEDGTVVEPEQVVGPARPGRKLVYTADT- 211
Query: 257 SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-------RQAV 306
PR A A +L+ +ATF DD H + +I R A+
Sbjct: 212 -----RPRQRTVEVAENADLLVHDATFADDMADRARDTAHSTGREAGEIAARADAKRLAL 266
Query: 307 LKLQSKVSAKVVPLTEGFKSVY 328
+ + S+ + P+ ++ +
Sbjct: 267 VHVSSRYAGDASPILREARAAF 288
>gi|52080917|ref|YP_079708.1| ribonuclease Z [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319645126|ref|ZP_07999359.1| ribonuclease Z [Bacillus sp. BT1B_CT2]
gi|404489801|ref|YP_006713907.1| ribonuclease Z [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|76363374|sp|Q65HN6.1|RNZ_BACLD RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|52004128|gb|AAU24070.1| RNase Z responsible for the maturation of the 3' end of tRNA
[Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52348794|gb|AAU41428.1| ribonuclease Z [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317392935|gb|EFV73729.1| ribonuclease Z [Bacillus sp. BT1B_CT2]
Length = 307
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 92/213 (43%), Gaps = 31/213 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP V+SR + P T++ P IK +E ++ +
Sbjct: 59 IFITHLHGDHVYGLPGLVSSRSFQGGEGPLTVYGPQGIKTFLETALDV----SGTHVTYP 114
Query: 178 LVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQI 230
LV ++GE +D +V H IP+ GY + L + K+ G
Sbjct: 115 LVIKEIGEGTVFEDDQFIVTARSVSHGIPAFGYRVQEKDVPGALDAEALKEIGVSPGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLNPRNADALRAKILIT 276
+KL K+G +T D I P+ VAF+GDT N + A +A +LI
Sbjct: 175 QKL-KNGETVTLEDGRTIHGADFIGPPKKGRIVAFSGDTRP--CENVKRL-AEKADVLIH 230
Query: 277 EATFLDDEMSIEHAQQHGHT-HLSEDIRQAVLK 308
EATF + + H + +E R+A K
Sbjct: 231 EATFAKGDRELAGDYYHSTSEQAAETAREACAK 263
>gi|212223398|ref|YP_002306634.1| ribonuclease Z [Thermococcus onnurineus NA1]
gi|254808680|sp|B6YT50.1|RNZ_THEON RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|212008355|gb|ACJ15737.1| ribonuclease Z [Thermococcus onnurineus NA1]
Length = 311
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 85/210 (40%), Gaps = 38/210 (18%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPS 154
FD+G R + + +FITH H DH GL + + L+N KP I+ P
Sbjct: 34 FDVGEGTMRQMSTAKLSPMKVEKIFITHFHGDHYLGLAALIQTMNLWNREKPLHIYGPKY 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
++ + G D+ ++GE D + FK H IP+ GYV
Sbjct: 94 TFRFIQNFL----NSGFFRPGFDIHVHEIGEVRLKFGDYEIWSFKVEHGIPALGYVFKEK 149
Query: 215 RKKLK------KQYIHLKGKQIEKLKKSG-VEITDIILSPE-----------VAFTGDT- 255
K+ K +Y +G + KL+K G +E I+ E V +TGDT
Sbjct: 150 DKRGKFLPEKLAEYGLSEGPILGKLEKQGQIEWNGRIIRLEDVTGPRRKGVKVVYTGDTE 209
Query: 256 -TSEFMLNPRNADALRAKILITEATFLDDE 284
L NAD +LI EAT+L E
Sbjct: 210 PCERTRLFAENAD-----LLIHEATYLRPE 234
>gi|421654189|ref|ZP_16094520.1| putative ribonuclease Z [Acinetobacter baumannii Naval-72]
gi|408512039|gb|EKK13686.1| putative ribonuclease Z [Acinetobacter baumannii Naval-72]
Length = 324
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVAICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLY 110
Query: 174 LNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ 221
L L +DV E ++ ++ +V+ H +PS + IY+ ++KKL Q
Sbjct: 111 LPYSLQFIDVNEATPPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQ 163
>gi|312136968|ref|YP_004004305.1| rnase z [Methanothermus fervidus DSM 2088]
gi|311224687|gb|ADP77543.1| RNAse Z [Methanothermus fervidus DSM 2088]
Length = 328
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 33/185 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI G+P + S G N K P TI+ PP IKE E + + LG ++ D
Sbjct: 57 IFISHLHGDHILGIPGLIQSMGFRNRKKPLTIYGPPGIKEVKEAMMK----LGEFSIDFD 112
Query: 178 LVALDV---GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKK--LKKQYIHLK---GKQ 229
+ ++ G +E + KT H + Y I ++ L+++ I L G
Sbjct: 113 INVKEIKNEGIVFE-NEKYKIECIKTKHTTENYSYSIEEKKRPRFLREKAIKLGVKPGPA 171
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTT-SEFMLN-PRNADALRAKILI 275
KL + V++ D I+ PE V ++GDT E M+ ++AD +LI
Sbjct: 172 FSKLHRGIPVKVGDRIVKPEEVLGKPRKGIKVVYSGDTVPHEKMIEFAKDAD-----LLI 226
Query: 276 TEATF 280
++TF
Sbjct: 227 HDSTF 231
>gi|290769886|gb|ADD61657.1| putative protein [uncultured organism]
Length = 322
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 20/207 (9%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+ V +TH H DHI GLP + + N P TI+ PP + + + L
Sbjct: 81 DAVLLTHYHGDHILGLPGLLQTLASLNRTAPLTIYGPPGQESIAAAIMALAGPLPYP--- 137
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR------KKLKKQYIHLKGKQ 229
VA + E + V PF H +P GY ++L R + K I L+ +
Sbjct: 138 ---VAWKIAEGTCKEAGLTVTPFPLKHRVPCCGYRLHLPRAGRFDAARAKAAGIPLEYWR 194
Query: 230 IEKLKKS--GVEITDIILSPEVAFTGDTTSEFMLNPRNADALR-AKILITEATFLDDEMS 286
+ + +S G D++ P T ++ P +A R A +L ++T+ DD
Sbjct: 195 VLQAGQSIGGFAPGDVLGPPRRGLTVVYATDTRPCPAVLEAARGADLLCMDSTYADD-TD 253
Query: 287 IEHAQQHGHTHLSEDIRQAVLKLQSKV 313
+ A+ +GH E L ++KV
Sbjct: 254 LPKAKLYGHATCRE---TGALAAEAKV 277
>gi|41019477|sp|Q58897.2|RNZ_METJA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
Length = 317
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 38/218 (17%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI G+P + S G + K IF P KE +E ++ +E
Sbjct: 57 NHIFITHLHGDHILGIPGLLQSMGFFGREKELKIFGPEGTKEIIENSLKLGTHY--IEFP 114
Query: 176 LDLVALDVGE---TYEMRN-DIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHL 225
+ + + E Y+ N +I+ P T H IPS Y+ ++K K KK + +
Sbjct: 115 IKVYEIYTKEPITIYKEENYEIIAYP--TEHGIPSYAYIFKEIKKPRLDIEKAKKLGVKI 172
Query: 226 KGKQIEKLKKSGVEITDI---ILSPE-----------VAFTGDT--TSEFMLNPRNADAL 269
G ++KL K+G + +I I+ PE +A++GDT +F + L
Sbjct: 173 -GPDLKKL-KNGEAVKNIYGEIIKPEYVLLPPKKGFCLAYSGDTLPLEDF---GKYLKEL 227
Query: 270 RAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVL 307
+LI EATF D+ + + A+++ H+ + + + A L
Sbjct: 228 GCDVLIHEATF--DDSAKDAAKENMHSTIGDAVNIAKL 263
>gi|239827626|ref|YP_002950250.1| ribonuclease Z [Geobacillus sp. WCH70]
gi|259494136|sp|C5D428.1|RNZ_GEOSW RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|239807919|gb|ACS24984.1| ribonuclease Z [Geobacillus sp. WCH70]
Length = 308
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 28/196 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P TI+ P I+ +E + S ++ +L
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGDTPLTIYGPKGIQAFIE--ISLSVSYTRLKYDLQ 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLK---------KQ 221
+V ++ G +E +V+ + H IPS G+ + LL KLK Q
Sbjct: 117 VVEIEEGTIFEDERFLVIAK-QLDHGIPSYGFRVVEKDLPGTLLVDKLKVLGIRPGPIYQ 175
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITE 277
I L GK ++ + ++ D + P+ V GDT A A +L+ E
Sbjct: 176 QIKL-GKTVQLDNGTVIDGRDFVGPPQKGRIVTILGDTR---YCEASVELAKEADVLVHE 231
Query: 278 ATFLDDEMSIEHAQQH 293
ATF ++ ++ H H
Sbjct: 232 ATFAAEDSALAHDYFH 247
>gi|358051251|ref|ZP_09145467.1| ribonuclease Z [Staphylococcus simiae CCM 7213]
gi|357259264|gb|EHJ09105.1| ribonuclease Z [Staphylococcus simiae CCM 7213]
Length = 306
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 102/275 (37%), Gaps = 59/275 (21%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLY--NLKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP ++SR + KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSLKLGKVSHIFITHMHGDHIFGLPGLLSSRSFQGGDGKPLTLIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IKE V E+ SL LN + +++ E +D V +H IPS GY I
Sbjct: 96 GIKEFV----EMSLSLSESHLNYPITYIEIDEDLSYSHDGFTVEARILNHGIPSYGYRIE 151
Query: 213 LLRKKLKKQYIHLKGKQIE-KLKKSGVEITDII-----------------LSPEVAFTGD 254
L+ +E K V++ D P +A GD
Sbjct: 152 APETTGTINVQALRDIGLEPGPKYQEVKLQDTFEYNGQLYQSQDFRGQSKKGPIIAIFGD 211
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH------------------T 296
T A A +++ EAT+++ E ++ + H H T
Sbjct: 212 TKP---CANEQYIAQYADLMVHEATYIEGEKTLANNYHHSHIDDVFDLIKHAQVKHSLIT 268
Query: 297 HLS-----EDIRQAVLKLQSKVSAKVVPLTEGFKS 326
HLS EDI Q LQ+K + F S
Sbjct: 269 HLSNRYNVEDIEQINQALQNKADTPQFSFVKDFDS 303
>gi|294669231|ref|ZP_06734311.1| ribonuclease Z [Neisseria elongata subsp. glycolytica ATCC 29315]
gi|291308863|gb|EFE50106.1| ribonuclease Z [Neisseria elongata subsp. glycolytica ATCC 29315]
Length = 307
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 22/127 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL--KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FITH H DHI GLP ++SR +P ++ P I+ VE E+ ++ + +N
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFLGGADEPLCLYGPAGIRRFVESALEVSQTQLSYPINF 118
Query: 177 -----DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE 231
D + LD GE VR F H +PS Y I ++ G Q+E
Sbjct: 119 HEFVSDGLILDDGE-------FTVRAFGLAHSLPSFAYRI--------EEKERAGGLQME 163
Query: 232 KLKKSGV 238
+L++ G+
Sbjct: 164 RLRELGI 170
>gi|150401156|ref|YP_001324922.1| ribonuclease Z [Methanococcus aeolicus Nankai-3]
gi|166991483|sp|A6UUY8.1|RNZ_META3 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|150013859|gb|ABR56310.1| ribonuclease Z [Methanococcus aeolicus Nankai-3]
Length = 322
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 94/217 (43%), Gaps = 54/217 (24%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R + + N +FI+H H DHI GL + S G +P I+ PP
Sbjct: 33 FDCGEGTQRQMIYTDISPMKINNIFISHLHGDHILGLAGLLQSIGFNGRTEPINIYGPPE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMR----NDIVVRPFKTHHVIPSQGYV 210
IK +E + +I G +N + ++ M+ + + +H IP Y+
Sbjct: 93 IKNTIENILKI----GYHSINFKITVHEINSKKPMKIIDSEKYMAYAYPVNHSIPCYAYI 148
Query: 211 IYLLRKKLKKQYIHLK---------GKQIEKLK-------KSGVEI--TDIILSPE---- 248
+ K+ KK ++LK G ++ LK K+G I D++L P+
Sbjct: 149 L----KEKKKPQLNLKKAMELGVEVGPDLKSLKDGNEVKLKNGKIIYPNDVLLPPKDSMC 204
Query: 249 VAFTGDTT-----SEFMLNPRNADALRAKILITEATF 280
VA++GDT EF+ +++ +LI EATF
Sbjct: 205 VAYSGDTMPIEDFGEFL------NSIGCTVLIHEATF 235
>gi|293609558|ref|ZP_06691860.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427423300|ref|ZP_18913459.1| putative ribonuclease Z [Acinetobacter baumannii WC-136]
gi|292828010|gb|EFF86373.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425699945|gb|EKU69543.1| putative ribonuclease Z [Acinetobacter baumannii WC-136]
Length = 325
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVAICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLY 110
Query: 174 LNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKL 218
L L +DV E ++ ++ +V+ + H +PS + IY+ ++KKL
Sbjct: 111 LPYSLQFIDVNEATQPQQITDEFIVQAHQLSHRVPSFAFSIYIKSIQKKL 160
>gi|256810849|ref|YP_003128218.1| ribonuclease Z [Methanocaldococcus fervens AG86]
gi|256794049|gb|ACV24718.1| ribonuclease Z [Methanocaldococcus fervens AG86]
Length = 314
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 40/219 (18%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI G+P + S G + K IF P KE L + +LG +
Sbjct: 54 NKIFITHLHGDHILGIPGLLQSMGFFGRNKEIEIFGPEGTKE----LIKSSLNLGFHCIE 109
Query: 176 LDLVALDVGE-----TYEMRN-DIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYI 223
+ ++ E Y+ N +I+ P T H +PS Y+ ++K K KK +
Sbjct: 110 FPIKVYEICEKEPITIYKEENYEIIAYP--TKHSVPSYAYIFKEIKKPRLDIEKAKKLGV 167
Query: 224 HLKGKQIEKLKKSG---------VEITDIILSPE----VAFTGDT--TSEFMLNPRNADA 268
+ G ++KLK V D++L P+ +A++GDT +F + +
Sbjct: 168 RI-GPDLKKLKNGEAVKNIHGEIVRPEDVLLPPKKGFCLAYSGDTLPLEDF---GKYLEE 223
Query: 269 LRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVL 307
L +LI EATF D+++ + A+++ H+ + + + A L
Sbjct: 224 LGCDVLIHEATF--DDLAKDIAKENMHSTIGDAVSIAKL 260
>gi|408356557|ref|YP_006845088.1| ribonuclease Z [Amphibacillus xylanus NBRC 15112]
gi|407727328|dbj|BAM47326.1| ribonuclease Z [Amphibacillus xylanus NBRC 15112]
Length = 311
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 35/222 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR + P TI+ P I++ +E I ++ +LN
Sbjct: 59 IFITHLHGDHIYGLPGLLSSRSFQEGISPLTIYGPKGIRDYIEMSLSISQTKLGYQLNF- 117
Query: 178 LVALDVGETYE-MRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
++V ++ + ND + K H + S GY I L KLK Y
Sbjct: 118 ---VEVYHGFQFVENDYTIDVIKLDHGVDSFGYRIIEADQIGELQVDKLKSLGIKPGPIY 174
Query: 223 IHLKGKQIEKLKKSG-VEITDIILSP----EVAFTGDTTSEFMLNPRNADAL-RAKILIT 276
+K ++ +L + D++ S ++A GDT +N D + +LI
Sbjct: 175 QQIKSNEVTQLPNGELIYRQDVVGSNKKGRKIAIFGDTRYPL----KNVDFIYNCDLLIH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVV 318
EATF ++ ++ A Q+ H S +++ A L Q++V ++
Sbjct: 231 EATFHGEDQNL--ADQYYH---SSNVQVAELAKQAQVKQLIL 267
>gi|435850902|ref|YP_007312488.1| ribonuclease Z [Methanomethylovorans hollandica DSM 15978]
gi|433661532|gb|AGB48958.1| ribonuclease Z [Methanomethylovorans hollandica DSM 15978]
Length = 305
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 117/243 (48%), Gaps = 46/243 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRG-LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+F+TH H DH+ G+P + + L +P I+ P +KE V+ + E LG +L+ +
Sbjct: 57 IFVTHFHADHMLGIPGLIQTMSFLGRTEPLYIYGPQWVKEFVKIISE----LGYYKLHFE 112
Query: 178 LVALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKK---LKKQYIHLK---GKQ 229
+ +++ G+ + RND + T H +PS GY + ++K +++ I L G
Sbjct: 113 VEVIEMAPGDIIK-RNDYSIHAIGTDHSVPSLGYALIEDQRKGRFEREKAIALGVPPGPL 171
Query: 230 IEKLKKSGVEI---------TDII--LSP--EVAFTGDT--TSEFMLNPRNADALRAKIL 274
KL SGV++ TD++ + P ++ +TGDT + R+AD +L
Sbjct: 172 FSKL-HSGVDVEVNGKLIRSTDVVGQVRPGRKIVYTGDTRPCQSILAVSRDAD-----VL 225
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQAVLK-LQSKVSAKVVPLTEGFK 325
I ++T +D+ E A++ H+ SE +R+ VL + S+ + PL +
Sbjct: 226 IHDSTLGNDQS--EWAKESKHSTASEAAILAKEAGVRKLVLTHISSRYTDDASPLLREAQ 283
Query: 326 SVY 328
V+
Sbjct: 284 EVF 286
>gi|357979150|emb|CCE66771.1| conserved hypothetical protein (metallo-beta-lactamase superfamily
protein) [Candidatus Mycoplasma haemominutum 'Birmingham
1']
Length = 603
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FI+HGH DHIGG+P +A L+ P I+ P E ++K E ++ VELN L
Sbjct: 84 LFISHGHEDHIGGVPHLLA-----RLEVPAIYAPALALELIKKKLEENK----VELNSKL 134
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPS---------QGYVIYL--LRKKLKKQYIHLKG 227
D RN V F+ +H IP G V++ R LK + +
Sbjct: 135 EVYDADSLIVTRN-FAVEFFEVNHSIPDSYGLFVSTPNGAVVFSGDFRFDLKNK---INS 190
Query: 228 KQIEKLKKSGVEITDIILSPEVA 250
K +KL G D++L A
Sbjct: 191 KAFQKLINIGGRQVDLLLCESTA 213
>gi|126466127|ref|YP_001041236.1| RNAse Z [Staphylothermus marinus F1]
gi|126014950|gb|ABN70328.1| RNAse Z [Staphylothermus marinus F1]
Length = 251
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 74/185 (40%), Gaps = 41/185 (22%)
Query: 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
++ N V ITH H DH GL S L N K + P+ +D+ K F I L +E
Sbjct: 52 VKINAVMITHLHGDHYLGLFGMFQSMHLSNRKNELYLIAPAKLKDLLKEF-IELGLAKIE 110
Query: 174 LNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKL 233
L V GE Y + I V FK H I + GY++ L
Sbjct: 111 YPLYFVEAREGELYR-DSKISVEAFKVVHGIEAYGYILML-------------------- 149
Query: 234 KKSGVEITDIILSPEVAFTGDTT--SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQ 291
K+G + +TGDT E +NAD ILI EATF D + A
Sbjct: 150 -KNG---------KRIVYTGDTKPFEELESIAKNAD-----ILIHEATFTSDLR--KEAW 192
Query: 292 QHGHT 296
+ GH+
Sbjct: 193 EQGHS 197
>gi|259503099|ref|ZP_05746001.1| ribonuclease Z [Lactobacillus antri DSM 16041]
gi|259168965|gb|EEW53460.1| ribonuclease Z [Lactobacillus antri DSM 16041]
Length = 309
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 83/198 (41%), Gaps = 31/198 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR P TI+ P IK V ++ S + L
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGNEPLTIYGPVGIKRFVTTALQVSES--RLSYPLH 116
Query: 178 LVALD-VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
V +D GE + + V K H I GY + L KL+ Y
Sbjct: 117 FVEIDHEGEVFHDQG-FTVTAKKLDHKIACYGYRVVEADHPGELQVDKLRALNIPSGPVY 175
Query: 223 IHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILI 275
LK GK++ V D I +P+ V GDT T+ + R+AD IL+
Sbjct: 176 GQLKAGKEVTLADGRTVNGRDFIGAPQKGRIVTICGDTRKTANAVELARDAD-----ILV 230
Query: 276 TEATFLDDEMSIEHAQQH 293
E+TF DE + + H
Sbjct: 231 HESTFAKDEAKLARSYYH 248
>gi|347753276|ref|YP_004860841.1| ribonuclease Z [Bacillus coagulans 36D1]
gi|347585794|gb|AEP02061.1| Ribonuclease Z [Bacillus coagulans 36D1]
Length = 305
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 97/224 (43%), Gaps = 35/224 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++ SR P T++ P IK VE ++ + ++ L+
Sbjct: 59 IFITHLHGDHIFGLPGFLGSRSFQGGDGPLTVYGPKGIKAFVEVSLKVSET--RLKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIH------ 224
++ ++ G +E + V + H I S GY I L +LKK+ I
Sbjct: 117 IIEIEEGTVFE-DDRFTVCALRLDHGIESFGYRITEKDKPGALDADRLKKEGIRPGPVYR 175
Query: 225 -LKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNAD---ALRAKILI 275
LK + L+ V L P +A GDT P A+ A A +L+
Sbjct: 176 LLKEGRTVTLEDGRVISGKDYLGPAKKGKIIAILGDT------RPNEAEIRLAANADLLV 229
Query: 276 TEATFLDDEMSIEHAQQHGHT-HLSEDIRQAVLK--LQSKVSAK 316
EATF + + H H T ++ +QA K L + +SA+
Sbjct: 230 HEATFNKESGQMAHDYFHSTTADAAQTAKQAGAKRLLLTHISAR 273
>gi|257437856|ref|ZP_05613611.1| ribonuclease Z [Faecalibacterium prausnitzii A2-165]
gi|257199516|gb|EEU97800.1| putative ribonuclease Z [Faecalibacterium prausnitzii A2-165]
Length = 312
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 43/217 (19%)
Query: 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGN- 171
++ + + +TH H DHI GLP + + G +P T++ P E + +++ R+L
Sbjct: 52 MKLDAICLTHYHGDHIFGLPGLLQTLGCQGRERPLTLYGP----EGLGEVWPALRTLAGP 107
Query: 172 -------VELN---LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKK---- 217
V+L+ +DL L G + + PF+T H +PS+GY + L R
Sbjct: 108 LPYPVRAVQLDTDPIDLTTLSSGWPAGAQ----LTPFRTRHRVPSRGYRLDLPRAGRFDP 163
Query: 218 LKKQYIHL---------KGKQIEKLKKSGVEITDIILSP-----EVAFTGDTTSEFMLNP 263
K + +++ +G+ I L+ V +L P F+GDT L
Sbjct: 164 AKARALNVPVPAWKLLQRGQSI-PLENGAVVSPADVLGPARRGLRFVFSGDTAPCPAL-- 220
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
A A + + +AT+ D+E + A+Q GH+ ++
Sbjct: 221 -EQAAQNADLFLCDATYPDNEQEAQ-AKQWGHSTFAQ 255
>gi|312869010|ref|ZP_07729187.1| ribonuclease Z [Lactobacillus oris PB013-T2-3]
gi|311095436|gb|EFQ53703.1| ribonuclease Z [Lactobacillus oris PB013-T2-3]
Length = 309
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 84/198 (42%), Gaps = 31/198 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR +P TI+ P IK V ++ S + L
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRFVTTALQVSES--RLSYPLH 116
Query: 178 LVALD-VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
V +D GE + R V K H I GY + L KL+ Y
Sbjct: 117 FVEIDHEGEAFHDRG-FTVTARKLDHKIACYGYRVVEADHPGELQVDKLRALNIPSGPVY 175
Query: 223 IHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILI 275
LK GK + V D I +P+ +A GDT T+ + ++AD +L+
Sbjct: 176 GQLKAGKVVTLADGRTVNGQDFIGAPQKGRIIAICGDTRKTANAVELAQDAD-----VLV 230
Query: 276 TEATFLDDEMSIEHAQQH 293
E+TF DE + + H
Sbjct: 231 HESTFAKDEAKLARSYYH 248
>gi|345006121|ref|YP_004808974.1| ribonuclease Z [halophilic archaeon DL31]
gi|344321747|gb|AEN06601.1| Ribonuclease Z [halophilic archaeon DL31]
Length = 309
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 104/256 (40%), Gaps = 60/256 (23%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + + ++H H DH+ G+P V + + P I VPP
Sbjct: 35 FDCGEGTQRQMMRFGTGFDVDHLLVSHLHGDHVLGIPGLVQTWDFQERESPLAIHVPPDS 94
Query: 156 KEDVEKLF-EIHRSLGNV----ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV 210
+ +E L I + G E+ VA+D E YE VR FKT H S GY
Sbjct: 95 RRQIENLIGAIGHNAGFPIRIHEVTPGSVAIDA-EEYE------VRSFKTEHRTTSMGYA 147
Query: 211 IY-------LLRKKLKKQ--------YIHLKGKQIEKLKKSGVEITDIILSP-----EVA 250
+ +R+K +K+ Y L + +L+ V +D ++ P +
Sbjct: 148 LVEDDRPGRFMREKAEKELGIPPGPAYGKLHAGESVELEDGHVIDSDRVVGPPRPGRSLV 207
Query: 251 FTGDT-----TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
+TGDT T + P +LI +ATF D E A+ GH E
Sbjct: 208 YTGDTRPIQATVDVTEEP--------DLLIHDATFDDSEAG--RARSTGHATARE----- 252
Query: 306 VLKLQSKVSAKVVPLT 321
++ +++ AK + LT
Sbjct: 253 AGEIAARMGAKRLALT 268
>gi|260550918|ref|ZP_05825124.1| ribonuclease Z [Acinetobacter sp. RUH2624]
gi|424054982|ref|ZP_17792505.1| ribonuclease Z [Acinetobacter nosocomialis Ab22222]
gi|425741939|ref|ZP_18860069.1| putative ribonuclease Z [Acinetobacter baumannii WC-487]
gi|445430788|ref|ZP_21438547.1| putative ribonuclease Z [Acinetobacter baumannii OIFC021]
gi|260406045|gb|EEW99531.1| ribonuclease Z [Acinetobacter sp. RUH2624]
gi|407438907|gb|EKF45449.1| ribonuclease Z [Acinetobacter nosocomialis Ab22222]
gi|425489674|gb|EKU55977.1| putative ribonuclease Z [Acinetobacter baumannii WC-487]
gi|444760416|gb|ELW84866.1| putative ribonuclease Z [Acinetobacter baumannii OIFC021]
Length = 318
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 33/191 (17%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVAICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLH 110
Query: 174 LNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------- 221
L L +DV + ++ ++ +V+ H +PS + IY+ ++KKL Q
Sbjct: 111 LPYSLQFIDVNDAIQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDIQALTQLGV 170
Query: 222 -----YIHLK-GKQIEKLKKSGVEITDII----LSPEVAFTGDTTSEFMLNPRNADALR- 270
+ HLK G IE + ++ D I GD +L ADA +
Sbjct: 171 PQGDMWGHLKRGYNIE-FEGQTLKAQDFIKIQNQQVHAIIGGDNDQPELL----ADACKD 225
Query: 271 AKILITEATFL 281
A++LI E+T+L
Sbjct: 226 AQLLIHESTYL 236
>gi|456970666|gb|EMG11417.1| beta-lactamase domain protein [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 104
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 247 PEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
P ++F+GDT E++L + D + IL E T++D+E ++ A++ GHTHL E
Sbjct: 5 PVISFSGDTKIEYVL--EHEDVANSSILFIECTYIDNERNVAQAREWGHTHLDE 56
>gi|448457241|ref|ZP_21595736.1| ribonuclease Z [Halorubrum lipolyticum DSM 21995]
gi|445810822|gb|EMA60837.1| ribonuclease Z [Halorubrum lipolyticum DSM 21995]
Length = 310
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Query: 104 FDIGRCPTRAIQQN-------FVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + ++ VF++H H DH+ G+P V + G + + P TI PP
Sbjct: 35 FDCGEGTQRGMMRHGTGFGITHVFVSHLHGDHVLGIPGLVQTLGFNDREEPLTIHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+D+ L +H + + + + GE + VR F+T H SQGYV+
Sbjct: 95 ADDLRDL--VHAVGHDPAFRIRIDEVSPGEVALDADGYEVRAFETTHRTKSQGYVL 148
>gi|45358469|ref|NP_988026.1| ribonuclease Z [Methanococcus maripaludis S2]
gi|56749433|sp|Q6LYT2.1|RNZ_METMP RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|44921227|emb|CAF30462.1| conserved hypothetical protein [Methanococcus maripaludis S2]
Length = 308
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 57/250 (22%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R I + N +FITH H DH+ GLP + S K P I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFITHLHGDHVLGLPGLLQSIAFQGRKKPLNIYGPAE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ +E + + + +N+ ++ E N+ V + H +P+ YV
Sbjct: 93 TVKMIEHILGVGYHSIDYPINVHEISSKTPERIIFTNNYEVFSYPVVHSVPALAYVF--- 149
Query: 215 RKKLKKQYIHLKGKQIEKLKKSGVEI----------------------TDIILSPE---- 248
K++KK + L EK+KK G+EI D+ L P+
Sbjct: 150 -KQVKKPRMDL-----EKVKKLGIEIGPDLKRLKDGFNVELNGEIITLNDVTLPPKKGIC 203
Query: 249 VAFTGDTT-----SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIR 303
V ++GDT +EF+ L+ LI EATF D+ +A++ H+ ++ +
Sbjct: 204 VGYSGDTIPLKEFAEFL------KELKCNTLIHEATF--DKTMERNAKETLHSTATDALN 255
Query: 304 QAVLKLQSKV 313
A L S V
Sbjct: 256 IAKLSGVSTV 265
>gi|389845642|ref|YP_006347881.1| ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Haloferax
mediterranei ATCC 33500]
gi|448616739|ref|ZP_21665449.1| ribonuclease Z [Haloferax mediterranei ATCC 33500]
gi|388242948|gb|AFK17894.1| ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Haloferax
mediterranei ATCC 33500]
gi|445751394|gb|EMA02831.1| ribonuclease Z [Haloferax mediterranei ATCC 33500]
Length = 311
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 113/265 (42%), Gaps = 45/265 (16%)
Query: 101 KCAFDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV-- 151
+ FD G R + + + +F+TH H DHI G+P + + +N + + +
Sbjct: 32 RLLFDCGEGTQRQMMRFGTGFGISHLFVTHLHGDHILGIPGLIQTLD-FNERDDALAIHG 90
Query: 152 PPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
PP K +EKL +H ++ + G +D VR F+T H S GY +
Sbjct: 91 PPGSKRHLEKL--VHAGGYQPGFHVSVHETQPGNVAYRADDYEVRAFETEHRTSSVGYSL 148
Query: 212 -------YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFT 252
R+K ++ + + G+ +E + ++ ++ P +V +T
Sbjct: 149 VEDDRPGRFNREKAEELGVPVGPAFGRLHTGEDVELEDGTVIKSEQVVGEPRPGRKVVYT 208
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQ 304
GDT L+ A A +L+ +ATF D+E E A + H+ E D+R+
Sbjct: 209 GDTRP---LDSTIEIARDADLLVHDATFTDEES--ERATKTAHSTAREAARVARDADVRR 263
Query: 305 -AVLKLQSKVSAKVVPLTEGFKSVY 328
A+ + ++ +A PL E + VY
Sbjct: 264 FALTHISARYAANPKPLLEQARGVY 288
>gi|76801770|ref|YP_326778.1| hypothetical protein NP2254A [Natronomonas pharaonis DSM 2160]
gi|121708247|sp|Q3IRM5.1|RNZ_NATPD RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|76557635|emb|CAI49218.1| ribonuclease Z [Natronomonas pharaonis DSM 2160]
Length = 308
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 101/254 (39%), Gaps = 45/254 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + FITH H DHI GLP + + + + P +++VP
Sbjct: 35 FDCGEGTQRQMMRFGTGFAVSKAFITHLHGDHILGLPGLLQTMDFNDREEPLSVYVPSGK 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR 215
+ ++ L I + G + + + G+ +D +R F+T H S GY +
Sbjct: 95 QAELRDL--IDTAAGAPSFPVHVNGVSDGQVVVDADDYEIRAFETDHDARSLGYALIEAS 152
Query: 216 KKL----------------KKQYIHLKGKQIEKLKKSGVEITDIILSP----EVAFTGDT 255
+K K Q +H G+ +E + VE ++ P V +TGDT
Sbjct: 153 RKGRFDRERAEELGVPVGPKFQQLH-AGEAVELEDGTVVEPEQVVGDPRPGRRVVYTGDT 211
Query: 256 --TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-------RQAV 306
T + NAD +LI +ATF D H + DI R A+
Sbjct: 212 RPTDRTVTVAENAD-----LLIHDATFATDNADRAARTAHSTAAEAADIASRADARRLAL 266
Query: 307 LKLQSKVSAKVVPL 320
+ + S+ + P+
Sbjct: 267 VHISSRYAGDPSPI 280
>gi|397780456|ref|YP_006544929.1| ribonuclease Z [Methanoculleus bourgensis MS2]
gi|396938958|emb|CCJ36213.1| ribonuclease Z [Methanoculleus bourgensis MS2]
Length = 317
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 85/192 (44%), Gaps = 28/192 (14%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH G+ V + P I+ PP + E V+ + I R + +
Sbjct: 61 NAIFITHWHADHFLGVFGLVETLAFMGRTDPLPIYGPPWVGEFVDLVQGISRHVRGFSIT 120
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL---KKQYIHLK---GKQ 229
AL+ G N VR F T H IP GYV+ + ++Q I L G
Sbjct: 121 GH--ALEHGSVVPF-NGYTVRAFATFHGIPGLGYVLEEDERPGRFNREQAIALGIPPGPL 177
Query: 230 IEKLKKS--------GVEI----TDIILSP----EVAFTGDTTSEFMLNPRNADALR-AK 272
+L++ GVE +D++ P ++ +TGDT L P A +R A
Sbjct: 178 FGRLQRGEAIRIVCDGVETEVRPSDVMGEPRPGRKIVYTGDTRPLQRL-PDAAGMVRDAD 236
Query: 273 ILITEATFLDDE 284
+LI +ATF D+E
Sbjct: 237 LLIHDATFDDEE 248
>gi|227830151|ref|YP_002831930.1| ribonuclease Z [Sulfolobus islandicus L.S.2.15]
gi|259494142|sp|C3MPH2.1|RNZ_SULIL RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|227456598|gb|ACP35285.1| ribonuclease Z [Sulfolobus islandicus L.S.2.15]
Length = 291
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 41/220 (18%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
ITH H DH+ GL +AS GL + K I P +K+ + FE + N ++ +
Sbjct: 59 ITHMHGDHVFGLLGVIASMGLLDRKETLYILGPRDLKDFLYTSFEYSKF--NPSFKIEFI 116
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-----YLLRKKLKKQYIHLKGKQIEKLK 234
+ Y +N I + FKT H + SQGY+I + ++ ++ + + KLK
Sbjct: 117 -----DNYNDQN-ITIATFKTCHTVESQGYLISERDRVKIDEEKLEKEKIKDWRVMRKLK 170
Query: 235 KS-GVEITDIILSPE----------VAFTGDT--TSEFMLNPRNADALRAKILITEATFL 281
+ VE L PE VA+TGDT + + + AD +LI ++TFL
Sbjct: 171 EGKTVEYNGKFLKPEDYLVIKRGLKVAYTGDTIPCQSVIESVKGAD-----LLIHDSTFL 225
Query: 282 DDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
++ A +GH+++++ + A+ + S K++ LT
Sbjct: 226 NE----PSAFTYGHSNVADAAKVAL-----EASVKLLALT 256
>gi|374723933|gb|EHR76013.1| ribonuclease Z / metallo-beta-lactamase superfamily protein
[uncultured marine group II euryarchaeote]
Length = 379
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 104/260 (40%), Gaps = 71/260 (27%)
Query: 112 RAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKL--------- 162
RA + + V +THGHLDH GL ++ + L + P + + P+ E +E L
Sbjct: 60 RAAKIDAVCLTHGHLDHTWGLLPWLQTMALDRREKPLLIIGPTSSETLEALSAGLPVPPT 119
Query: 163 ------------------------FEIHRSLGN------VELNLDL---VALDVGETYEM 189
+++ LG+ +ELN + +LD E
Sbjct: 120 APPAELARQMQSWHSLGATSEGLGYKVRWILGDTVADKWIELNPETGGSSSLDAMPQPEG 179
Query: 190 RNDIVVRPFKTHHVIPSQGYVIYLLRK---------KLKKQYIHLKGKQIEKLKKSGVEI 240
+ + P T H +PS ++ K +LK + L +Q +L + G ++
Sbjct: 180 WKQVKIVPLATTHTVPSCAWMFESKEKSGXXXXXXNRLKAAELRLSKEQQTELGQ-GRDV 238
Query: 241 T----DIILSP----------EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMS 286
T +++L+ +GDT + P D +L+ EATFL+D +
Sbjct: 239 TLDNGEVLLASSFRSESIRPHRFVISGDTAEQA---PGLIDLEGVDVLVHEATFLED--T 293
Query: 287 IEHAQQHGHTHLSEDIRQAV 306
+HA +H H+ + +R A+
Sbjct: 294 KDHATEHLHSTATGAVRTAL 313
>gi|340624205|ref|YP_004742658.1| ribonuclease Z [Methanococcus maripaludis X1]
gi|339904473|gb|AEK19915.1| ribonuclease Z [Methanococcus maripaludis X1]
Length = 308
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 41/242 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R I + N +FITH H DH+ GLP + S K P I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFITHLHGDHVLGLPGLLQSIAFQGRKKPLNIYGPAE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ +E + + + +N+ ++ E N+ V + H +P+ YV +
Sbjct: 93 TVKMIEHILGVGYHSIDYPINVHEISSKTPERIISTNNYEVFSYPVVHSVPALAYVFRQV 152
Query: 215 RK------KLKKQYIHLKGKQIEKLKKSG--------VEITDIILSPE----VAFTGDTT 256
+K K+KK I + G +++LK + + D+ L P+ V ++GDT
Sbjct: 153 KKPRMDLEKVKKLGIEI-GPDLKRLKDGFNVELNGEIITLNDVTLPPKKGICVGYSGDTI 211
Query: 257 -----SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQS 311
+EF+ L+ LI EATF D+ ++A++ H+ ++ + A L S
Sbjct: 212 PLTEFAEFL------KELKCNTLIHEATF--DKTMDKNAKETLHSTATDALNIAKLSGVS 263
Query: 312 KV 313
V
Sbjct: 264 TV 265
>gi|410996702|gb|AFV98167.1| hypothetical protein B649_09275 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 261
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 29/153 (18%)
Query: 82 TIEGVSIGGHET------CVIIPELKCAFDIGRCPTRAIQQNF----VFITHGHLDHIGG 131
+IE + GG T C+ + E C D G F +F+TH HLDHI
Sbjct: 3 SIEFLGTGGTRTPTQGTTCLRVSE-HCVIDAGNIINTFGDNIFTIEHIFLTHSHLDHIID 61
Query: 132 LP----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRS---------LGNVELNLDL 178
+P ++V + + +LK I+ + +D+ + HR +G+ + ++L
Sbjct: 62 IPFLADLFVTQKSI-SLK---IYGLKATLDDLRQFIFNHRVWPNFEEITLIGHTDKTIEL 117
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+ LD+ Y + +D+++ PFKT+H S GY+I
Sbjct: 118 IELDLEHPYPI-DDVILTPFKTNHTEGSCGYII 149
>gi|330508890|ref|YP_004385318.1| ribonuclease Z [Methanosaeta concilii GP6]
gi|328929698|gb|AEB69500.1| ribonuclease Z [Methanosaeta concilii GP6]
Length = 305
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155
FD G R T ++ N++F+TH H DHI G+P + + P P
Sbjct: 34 FDCGEGTQRQMMRARTGMMRLNYIFLTHLHADHILGIPGLLETMAFQGRVEPITIAGPI- 92
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVG--ETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+L E +S+ N +++AL++ + +M+ VR +T H +PS GYV+
Sbjct: 93 --HTARLVECFKSVCYFSRNFEVIALELSPEDVVKMKG-YQVRAIETRHSVPSLGYVL 147
>gi|91774034|ref|YP_566726.1| ribonuclease Z [Methanococcoides burtonii DSM 6242]
gi|91713049|gb|ABE52976.1| Ribonuclease Z [Methanococcoides burtonii DSM 6242]
Length = 305
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 31/208 (14%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIH 166
R T + + +FITH H DHI G+P V + +P TI+ P E VE+ +I
Sbjct: 46 RAKTGMMNLSSIFITHFHADHILGIPGLVQTMSFQGRTEPLTIYGP----EWVEEFVKIL 101
Query: 167 RSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
++G +L ++ A+ + ++ D V KT H IPS G+ L+ + ++
Sbjct: 102 SAIGYYKLKFEIKAVKLKSGTSVKRDGYSVIALKTDHNIPSIGFA--LVEDERPGRFDRD 159
Query: 226 K--------GKQIEKLKKSG-VEITDIILSPE-----------VAFTGDTTSEFMLNPRN 265
K G KL G VE+ I+S E V ++GDT L+
Sbjct: 160 KAIALGVPVGPLFSKLHHGGSVEVDGNIISAEDVVGEPRPGRTVVYSGDTRP--CLDVLE 217
Query: 266 ADALRAKILITEATFLDDEMSIEHAQQH 293
A ++ A +LI ++T DD + H
Sbjct: 218 A-SVGADLLIHDSTLADDMLDWAKEAMH 244
>gi|419958267|ref|ZP_14474332.1| ribonuclease Z [Enterobacter cloacae subsp. cloacae GS1]
gi|388606950|gb|EIM36155.1| ribonuclease Z [Enterobacter cloacae subsp. cloacae GS1]
Length = 305
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + N P TI+ P I+E VE + S + L+
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNANPLTIYGPAGIQEFVETTLRLSGSW--TDYPLE 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + G ++ D VR + +H + GY +
Sbjct: 118 VVEIGEGLVFD-DGDYQVRAYPLNHPVECYGYRV 150
>gi|423682887|ref|ZP_17657726.1| ribonuclease Z [Bacillus licheniformis WX-02]
gi|383439661|gb|EID47436.1| ribonuclease Z [Bacillus licheniformis WX-02]
Length = 307
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 27/211 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP V+SR + P T++ P IK +E ++ S +V L
Sbjct: 59 IFITHLHGDHVYGLPGLVSSRSFQGGEGPLTVYGPQGIKTFLETALDV--SGTHVTYPLV 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQIE 231
+ ++ G +E + +V H IP+ GY + L + KQ G +
Sbjct: 117 IKEIEEGTVFE-DDQFIVTARSVSHGIPAFGYRVQEKDVPGALDAEALKQTGVSPGPVYQ 175
Query: 232 KLK-------KSGVEI--TDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
KLK + G +I D I P+ VAF+GDT N + A +A +LI EA
Sbjct: 176 KLKNGETVTLEDGRKIRGADFIGPPKKGRIVAFSGDTRP--CENVKKL-AEKADVLIHEA 232
Query: 279 TFLDDEMSIEHAQQHGHT-HLSEDIRQAVLK 308
TF + + H + +E R++ K
Sbjct: 233 TFAKGDRELARDYYHSTSEQAAETARESCAK 263
>gi|399022537|ref|ZP_10724611.1| ribonuclease Z [Chryseobacterium sp. CF314]
gi|398084597|gb|EJL75275.1| ribonuclease Z [Chryseobacterium sp. CF314]
Length = 304
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 14/139 (10%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLF--- 163
+ R + N +FI+H H DH GLP +AS L + P ++ P IK +E +F
Sbjct: 47 KAKARFSKINHIFISHLHGDHCFGLPGLIASFRLLGRETPLHVYGPKGIKSMLETIFTIT 106
Query: 164 EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYI 223
E HR V LD D E N + V H I G YL R+K K +++
Sbjct: 107 ETHRGFEVVYHELD---KDYSEKIYEDNRVEVFTIPLDHRIYCNG---YLFREKPKDRHL 160
Query: 224 HLKGKQIEKLKKSGVEITD 242
++K E K S +E+ D
Sbjct: 161 NMK----EIAKYSEIEVCD 175
>gi|417549979|ref|ZP_12201059.1| putative ribonuclease Z [Acinetobacter baumannii Naval-18]
gi|417566530|ref|ZP_12217402.1| putative ribonuclease Z [Acinetobacter baumannii OIFC143]
gi|421806928|ref|ZP_16242790.1| putative ribonuclease Z [Acinetobacter baumannii OIFC035]
gi|395552202|gb|EJG18210.1| putative ribonuclease Z [Acinetobacter baumannii OIFC143]
gi|400387947|gb|EJP51020.1| putative ribonuclease Z [Acinetobacter baumannii Naval-18]
gi|410417471|gb|EKP69241.1| putative ribonuclease Z [Acinetobacter baumannii OIFC035]
Length = 324
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVAICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLY 110
Query: 174 LNLDLVALDVGETY---EMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKL 218
L L +DV E ++ ++ +V+ H +PS + IY+ ++KKL
Sbjct: 111 LPYSLQFIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKL 160
>gi|424059327|ref|ZP_17796818.1| ribonuclease Z [Acinetobacter baumannii Ab33333]
gi|445492437|ref|ZP_21460384.1| putative ribonuclease Z [Acinetobacter baumannii AA-014]
gi|404670065|gb|EKB37957.1| ribonuclease Z [Acinetobacter baumannii Ab33333]
gi|444763676|gb|ELW88012.1| putative ribonuclease Z [Acinetobacter baumannii AA-014]
Length = 324
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVAICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLY 110
Query: 174 LNLDLVALDVGETY---EMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKL 218
L L +DV E ++ ++ +V+ H +PS + IY+ ++KKL
Sbjct: 111 LPYSLQFIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKL 160
>gi|193077819|gb|ABO12693.2| Metal-dependent Hydrolase of the beta-lactamase superfamily III
[Acinetobacter baumannii ATCC 17978]
Length = 324
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L L
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLYLPYSL 115
Query: 179 VALDVGETY---EMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKL 218
+DV E ++ ++ +V+ H +PS + IY+ ++KKL
Sbjct: 116 QFIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKL 160
>gi|378581464|ref|ZP_09830111.1| RNase BN [Pantoea stewartii subsp. stewartii DC283]
gi|377815971|gb|EHT99079.1| RNase BN [Pantoea stewartii subsp. stewartii DC283]
Length = 303
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L P T++ P +K VE + S + L+
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTTPMTVYGPAGLKAFVETALSLSSSY--TDYPLE 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+V + GE + + V + +H I GY I +L +LK + + +G
Sbjct: 116 IVEIAAGEVLD-DGEFRVTAWPMNHTIACFGYRIEQHDKPGFLDAPRLKAEGVP-RGPWY 173
Query: 231 EKLKKS 236
++LK+
Sbjct: 174 QQLKQG 179
>gi|227529067|ref|ZP_03959116.1| ribonuclease Z [Lactobacillus vaginalis ATCC 49540]
gi|227351079|gb|EEJ41370.1| ribonuclease Z [Lactobacillus vaginalis ATCC 49540]
Length = 309
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 102/228 (44%), Gaps = 42/228 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR P TI+ P IK+ V ++ S L+
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGNEPLTIYGPVGIKKFVMTALQVSES----RLSYP 114
Query: 178 LVALDVGETYEMRNDIVVRPFKT-----HHVIPSQGYVI-------YLLRKKLKKQ---- 221
L +++ + E+ N+ R FK H I GY I L KL++
Sbjct: 115 LKFVEIDHSQELFNE---RGFKVTTMSLDHKIACYGYRIEEADHPGELQVDKLRQDNIPS 171
Query: 222 ---YIHLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADAL--RA 271
Y LK + KL V + + I P+ +A GDT P NA L +A
Sbjct: 172 GPIYGQLKAGKTVKLDDGRVIDGKNYIGKPQPGRIIAILGDTRQ----TP-NAVVLAHKA 226
Query: 272 KILITEATFLDDEMSIEHAQQHGHT-HLSEDIRQAVLK--LQSKVSAK 316
+L+ E+TF +E + H H + +E +QA +K L + +SA+
Sbjct: 227 DVLVHESTFAKNEAKMAHNYYHSTSLQAAEVAKQAGVKKLLLTHISAR 274
>gi|383319182|ref|YP_005380023.1| ribonuclease Z [Methanocella conradii HZ254]
gi|379320552|gb|AFC99504.1| ribonuclease Z [Methanocella conradii HZ254]
Length = 304
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 33/196 (16%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIH 166
R T + + +FITH H DH G+P + + G +P I+ P ++E +I
Sbjct: 46 RARTGFMDVDSIFITHFHADHTLGMPGLIQTMGFQGRSRPLHIYGPRFVRE----YCDIM 101
Query: 167 RSLGNVELNLDLVA--LDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL---KKQ 221
+LG ++ D+VA L G+ E R + F+T H +PS GY + ++ K +
Sbjct: 102 NTLGYLKPGFDVVAHELKHGDVVE-RKGYRIEAFRTFHSVPSLGYALREDKRPGRFNKPR 160
Query: 222 YIHL---KGKQIEKLKKSG--------VEITDIILSPE----VAFTGDT--TSEFMLNPR 264
+ L +G KL++ V+ +D++ P + +TGDT + F+
Sbjct: 161 ALELGVPEGPLFGKLQRGEDVAVDGRIVKSSDVVGPPRPGRLIVYTGDTVPSHAFLSILE 220
Query: 265 NADALRAKILITEATF 280
AD + ++EATF
Sbjct: 221 GAD-----LWVSEATF 231
>gi|387594235|gb|EIJ89259.1| integrator complex subunit 11 [Nematocida parisii ERTm3]
gi|387594982|gb|EIJ92609.1| integrator complex subunit 11 [Nematocida parisii ERTm1]
Length = 502
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYN----LKPPTIFVPPSIKEDVEKLFEIHRSLGNV 172
+ V ITH H+DH GGLP Y R Y+ + PPT V P I +D K++ +G
Sbjct: 58 DCVIITHFHMDHCGGLP-YFTERCKYSGPIYMTPPTKAVLPIILQDYCKVYNERDDVGKF 116
Query: 173 ------ELNL-----DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
E N+ ++ + + ET E+ D + P+ HV+ + Y
Sbjct: 117 QHPTYNEENIKNCMKKIIPISIEETVEIEKDFTITPYYAGHVLGAAMY 164
>gi|381336943|ref|YP_005174718.1| beta-lactamase superfamily hydrolase [Leuconostoc mesenteroides
subsp. mesenteroides J18]
gi|356644909|gb|AET30752.1| beta-lactamase superfamily hydrolase [Leuconostoc mesenteroides
subsp. mesenteroides J18]
Length = 318
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 34/222 (15%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + +FITH H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFITHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVI 211
+KE V+ I + + ++ V L G +E +V P + H I + G+ +
Sbjct: 96 KGVKEFVQTALRISET--RLSYPIEYVDLTEGVIFEDHTFQVVAAPMR--HRIETWGFRV 151
Query: 212 Y-------LLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPEVAFTGDTTS----EF 259
LL KLK++ I G +LK V + D + F G F
Sbjct: 152 IEKDHPGELLVDKLKQENIP-SGPVYGQLKAGKTVTLPDGRIVNGHDFIGKAQKGRIVTF 210
Query: 260 MLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHT 296
+L+ R D A A +L+ E+T+ E + A+ H H+
Sbjct: 211 ILDTRPNDNVEWLAKNADVLVHESTYGSSEEEAKMAKAHAHS 252
>gi|375082902|ref|ZP_09729944.1| ribonuclease Z [Thermococcus litoralis DSM 5473]
gi|374742400|gb|EHR78796.1| ribonuclease Z [Thermococcus litoralis DSM 5473]
Length = 294
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 36/190 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L+N KP ++ P E ++ + G + D
Sbjct: 45 IFITHFHGDHYLGLMSLIQTMTLWNREKPLHVYGPKYTFEFIQNYLKS----GFFRPSFD 100
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK---------GK 228
+ ++GE D + FK H +P+ GYV ++K K+ L G
Sbjct: 101 IHVHELGEARLKFGDYEIWSFKVEHGVPALGYV---FKEKDKRGSFDLDKIRELGLKPGP 157
Query: 229 QIEKLKKSG--------VEITDIILSP----EVAFTGDT--TSEFMLNPRNADALRAKIL 274
+++L+ G + + D+ SP +V +TGDT L AD +L
Sbjct: 158 WMKELETKGKIEIDGKVIHLEDVTGSPKRGAKVVYTGDTEPCERVKLFSEKAD-----VL 212
Query: 275 ITEATFLDDE 284
I EAT+L +E
Sbjct: 213 IHEATYLSEE 222
>gi|254167734|ref|ZP_04874584.1| ribonuclease Z [Aciduliprofundum boonei T469]
gi|289597097|ref|YP_003483793.1| ribonuclease Z [Aciduliprofundum boonei T469]
gi|197623262|gb|EDY35827.1| ribonuclease Z [Aciduliprofundum boonei T469]
gi|289534884|gb|ADD09231.1| ribonuclease Z [Aciduliprofundum boonei T469]
Length = 308
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 90/199 (45%), Gaps = 33/199 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L K P I+ P + + K I + +
Sbjct: 60 IFITHYHGDHFLGLAGLIQTMTLNERKEPLEIYGPERTIDILTKFLNI--GYYSPSFKIV 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------YLLRKKLKKQYIHLKGKQIE 231
L L E+ + D VV+ KT H +PS Y I + R + K + L K +E
Sbjct: 118 LYELKGNESLDF-GDYVVKVMKTKHPVPSLAYAIKEKDMPRIDRNRAKA--LGLNSKILE 174
Query: 232 KLKKS------GVEIT------DIILSPEVAFTGDTT-SEFMLNPRNADALRAKILITEA 278
KL+K+ G EIT + + ++ ++GDT E M+ + A A +LI EA
Sbjct: 175 KLRKNGKIEYEGKEITIDEVSNGVRVGRKIVYSGDTAPMEEMI----SFAANANVLIHEA 230
Query: 279 TFLDDEMSI-EHAQQHGHT 296
T E S+ E A Q+GH+
Sbjct: 231 TV---ESSLEEQANQYGHS 246
>gi|448589300|ref|ZP_21649459.1| ribonuclease Z [Haloferax elongans ATCC BAA-1513]
gi|445735728|gb|ELZ87276.1| ribonuclease Z [Haloferax elongans ATCC BAA-1513]
Length = 312
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 116/265 (43%), Gaps = 45/265 (16%)
Query: 101 KCAFDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV-- 151
+ FD G R + + + +F+TH H DHI G+P + + +N + ++ +
Sbjct: 32 RLLFDCGEGTQRQMMRFGTGFGISHLFVTHLHGDHILGIPGLIQTLD-FNERDDSLAIHG 90
Query: 152 PPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
PP K+ ++KL +H ++ + G +D +R F+T H S GY +
Sbjct: 91 PPGSKQHLKKL--VHAGGYQPGFHVSVHETRPGNVAYRGDDYEIRAFETEHRTSSVGYAL 148
Query: 212 -------YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFT 252
R+K ++ + + G+ +E + ++ D++ P +V +T
Sbjct: 149 VEDDRPGRFNREKAEELGVPVGPAFGRLHSGEDVELEDGTVIKSEDVVGDPRPGRKVVYT 208
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQ 304
GDT L+ A A +L+ +ATF D+E E A + H+ E ++R+
Sbjct: 209 GDTRP---LDGTIEIARDADLLVHDATFTDEEA--ERAAKTAHSTAREAARVARDANVRR 263
Query: 305 -AVLKLQSKVSAKVVPLTEGFKSVY 328
A+ + ++ +A PL E K V+
Sbjct: 264 FALTHISARYAANPRPLLEQAKEVF 288
>gi|226311817|ref|YP_002771711.1| ribonuclease Z [Brevibacillus brevis NBRC 100599]
gi|254808619|sp|C0ZBP8.1|RNZ_BREBN RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|226094765|dbj|BAH43207.1| ribonuclease Z [Brevibacillus brevis NBRC 100599]
Length = 318
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 13/133 (9%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP--TIFVPPSIKEDVEKLFEI 165
R P + Q + +FITH H DH+ GL +ASR L N +P ++ PP + + E
Sbjct: 47 RAPMKISQLDKIFITHLHGDHLYGLIGLLASRSLRNTEPTPLELYGPPGLDRYFRGIMEA 106
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
S +++ L++ + G YE +IVV H +PS Y + + K+ +
Sbjct: 107 --SPVHLQYPLEIKIVSEGVIYE-DEEIVVSCRMAKHRVPSFAYAV--MEKEKTGAF--- 158
Query: 226 KGKQIEKLKKSGV 238
Q+E+ K++GV
Sbjct: 159 ---QVERAKQAGV 168
>gi|334124926|ref|ZP_08498920.1| ribonuclease Z [Enterobacter hormaechei ATCC 49162]
gi|333387496|gb|EGK58690.1| ribonuclease Z [Enterobacter hormaechei ATCC 49162]
Length = 305
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + N P TI+ P I+E VE + S + L+
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNANPLTIYGPVGIQEFVETTLRLSGSW--TDYPLE 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + G ++ D VR + +H + GY +
Sbjct: 118 VVEIGEGLVFD-DGDYQVRAYPLNHPVECYGYRV 150
>gi|300710119|ref|YP_003735933.1| ribonuclease Z [Halalkalicoccus jeotgali B3]
gi|448297109|ref|ZP_21487157.1| ribonuclease Z [Halalkalicoccus jeotgali B3]
gi|299123802|gb|ADJ14141.1| ribonuclease Z [Halalkalicoccus jeotgali B3]
gi|445580291|gb|ELY34677.1| ribonuclease Z [Halalkalicoccus jeotgali B3]
Length = 306
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 102/248 (41%), Gaps = 45/248 (18%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F+TH H DH+ GLP + + + P + P
Sbjct: 35 FDCGEGTQRQMMRFSTGFSISAIFLTHVHGDHVLGLPGLLQTLDFNDRADPLVVHTPRGT 94
Query: 156 KEDVEKLF-EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ VE L + LG +++ + GE D ++ F+T H S GYV+
Sbjct: 95 RRTVEDLVGALDARLG---FPVEVREVAPGEVVRDGEDYEIQAFRTDHRTHSVGYVLVEA 151
Query: 215 RKKLKKQYIHLK---------------GKQIEKLKKSGVEITDIILSP----EVAFTGDT 255
+K + + G+ +E + ++ ++ SP V +TGDT
Sbjct: 152 DRKGRFDRERAEELGVPVGPAFGRLHAGEPVELADGTVIKPEQVVGSPRPGRRVVYTGDT 211
Query: 256 --TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
T E + +AD +LI +ATF DD E A++ GH+ E +L ++
Sbjct: 212 RPTEETVDASEDAD-----LLIHDATFGDD--WAERARETGHSSARE-----AGELAART 259
Query: 314 SAKVVPLT 321
K + LT
Sbjct: 260 GVKRLALT 267
>gi|290473490|ref|YP_003466359.1| binuclear zinc phosphodiesterase [Xenorhabdus bovienii SS-2004]
gi|289172792|emb|CBJ79563.1| binuclear zinc phosphodiesterase [Xenorhabdus bovienii SS-2004]
Length = 304
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 34/201 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P T++ P I++ VE ++ S + LD
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGSTDPVTLYGPKGIRQFVETTLQLSGSF--LTYPLD 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V + G ++ ++ V + +H + GY I L ++L + I +G +
Sbjct: 117 IVEVQSGLLFD-DGELKVTAYALNHRVECYGYRIEEHDKPGGLNTQRLNQDNIP-RGSWM 174
Query: 231 EKLKKSG---------VEITDIILSP----EVAFTGDT--TSEFMLNPRNADALRAKILI 275
+ LK+ G V D + +P +A GDT T E + N D +++
Sbjct: 175 QTLKQGGTVTLEDGRTVCGKDYLGAPISGKSLAIFGDTTPTPEALKLAANVD-----VMV 229
Query: 276 TEATFLDDEMSIEHAQQHGHT 296
E T L+D ++ E A +GH+
Sbjct: 230 HEIT-LEDALA-EKANNNGHS 248
>gi|298674167|ref|YP_003725917.1| ribonuclease Z [Methanohalobium evestigatum Z-7303]
gi|298287155|gb|ADI73121.1| ribonuclease Z [Methanohalobium evestigatum Z-7303]
Length = 304
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 93/216 (43%), Gaps = 35/216 (16%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHR 167
R T + + +FITH H DH+ G+P + + P P E ++ +I
Sbjct: 46 RARTGMMSLSSIFITHFHADHVLGIPGLLQTMSFQGRTEPLYIYGP---EKIDVFIQILT 102
Query: 168 SLGNVELNLDL--VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
+LG +L ++ V L G+ E +N ++ KT H + S GY L+ K ++
Sbjct: 103 ALGYCQLGYEIKTVELKPGDIIE-KNGYHIKALKTEHGVKSIGYS--LVENKRPGKFDRD 159
Query: 226 K--------GKQIEKLKKSG-VEITDIILSPE-----------VAFTGDTT-SEFMLNPR 264
K G KL+K VE+ + PE V ++GDT E + N
Sbjct: 160 KAVSLGVPPGPLFSKLQKGNPVEVDGRTVHPEEVVGEPRPGRTVVYSGDTRPCEDVFNA- 218
Query: 265 NADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
+L A +LI + + LDD S E A + H+ SE
Sbjct: 219 ---SLEADVLIHDGS-LDDSQS-EWAAESMHSTASE 249
>gi|448578910|ref|ZP_21644269.1| ribonuclease Z [Haloferax larsenii JCM 13917]
gi|445724838|gb|ELZ76465.1| ribonuclease Z [Haloferax larsenii JCM 13917]
Length = 312
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 116/265 (43%), Gaps = 45/265 (16%)
Query: 101 KCAFDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV-- 151
+ FD G R + + + +F+TH H DHI G+P + + +N + ++ +
Sbjct: 32 RLLFDCGEGTQRQMMRFGTGFGISHLFVTHLHGDHILGIPGLIQTLD-FNERDDSLAIHG 90
Query: 152 PPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
PP K+ ++KL +H ++ + G +D +R F+T H S GY +
Sbjct: 91 PPGSKQHLKKL--VHAGGYQPGFHVSVHETRPGNVAYRGDDYEIRAFETEHRTSSVGYTL 148
Query: 212 -------YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFT 252
R+K ++ + + G+ +E + ++ D++ P +V +T
Sbjct: 149 VEDDRPGRFNREKAEELGVPVGPAFGRLHSGEDVELEDGTVIKSEDVVGDPRPGRKVVYT 208
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQ 304
GDT L+ A A +L+ +ATF D+E E A + H+ E ++R+
Sbjct: 209 GDTRP---LDRTIEIARDADLLVHDATFTDEEA--ERAAKTAHSTAREAARVARDANVRR 263
Query: 305 -AVLKLQSKVSAKVVPLTEGFKSVY 328
A+ + ++ +A PL E K V+
Sbjct: 264 FALTHISARYAANPRPLLEQAKEVF 288
>gi|356502382|ref|XP_003519998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Glycine max]
Length = 516
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 47/186 (25%)
Query: 110 PTRAIQQ--NFVFITHGHLDHIGGLPMYVASRGLYN----LKPPTIFVPPSIKEDVEKLF 163
P+R + + + ITH HLDH+G L + G YN + PT + P + ED K+
Sbjct: 52 PSRDLNSALSCIIITHFHLDHVGALAYFTEVLG-YNGPVYMTYPTKALAPLMLEDYRKVM 110
Query: 164 -------EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK 216
E+ S E ++A+D+ +T ++ D+ +R + HVI G ++ +
Sbjct: 111 VDRRGEEELFSSDQIAECMKKVIAVDLRQTVQVEKDLQIRAYYAGHVI---GAAMFYAK- 166
Query: 217 KLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD--TTSEFMLNPRNADALRAKIL 274
+ E+ +TGD T + L D LR +L
Sbjct: 167 ---------------------------VGDAEMVYTGDYNMTPDRHLGAAQIDRLRLDLL 199
Query: 275 ITEATF 280
ITE+T+
Sbjct: 200 ITESTY 205
>gi|319892488|ref|YP_004149363.1| ribonuclease Z [Staphylococcus pseudintermedius HKU10-03]
gi|386319238|ref|YP_006015401.1| ribonuclease Z [Staphylococcus pseudintermedius ED99]
gi|317162184|gb|ADV05727.1| Ribonuclease Z [Staphylococcus pseudintermedius HKU10-03]
gi|323464409|gb|ADX76562.1| ribonuclease Z [Staphylococcus pseudintermedius ED99]
Length = 305
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 100/244 (40%), Gaps = 47/244 (19%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DH+ GLP + SR KP T+ P
Sbjct: 36 FDVGEATQHQILHHSIKLGKVSHIFITHMHGDHVFGLPGVLTSRSFQGGESKPLTVIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVIY 212
IK+ V E + SL LN L +++ + + N V +H IP GY I
Sbjct: 96 GIKDYV----EYNLSLTYSHLNYPLHIIEIEDQMNLSINGFEVNARPLNHGIPCFGYRIQ 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTG 253
L +KL+ QY +K + + + D P+ V G
Sbjct: 152 APDTPGKLDVQKLQALGMPPGPQYQKVKSQDTFEFEGQIYNAND-FKGPDKKGQVVTIFG 210
Query: 254 DTT-SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSK 312
DT S++ L A A +L+ E+T++D + ++ +A H H + VL L K
Sbjct: 211 DTRPSQYALEL----AKDADVLVHESTYIDGDKTLANAYHHSHI-------EDVLALIEK 259
Query: 313 VSAK 316
S K
Sbjct: 260 ASVK 263
>gi|300778911|ref|ZP_07088769.1| ribonuclease Z [Chryseobacterium gleum ATCC 35910]
gi|300504421|gb|EFK35561.1| ribonuclease Z [Chryseobacterium gleum ATCC 35910]
Length = 304
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVAS-RGLYNLKPPTIFVPPSIKEDVEKLFEI- 165
+ R + N +FI+H H DH GLP +AS R L P ++ P IK+ +E +F+I
Sbjct: 47 KAKARFSKINHIFISHLHGDHCFGLPGLIASFRLLGRENPLHVYGPKGIKKMLETIFQIT 106
Query: 166 --HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYI 223
HR V LD D E N I V H I G YL ++K K +++
Sbjct: 107 ETHRGFEVVYHELD---KDYSEKIYEDNRIEVYTIPLDHRIYCNG---YLFKEKPKDRHL 160
Query: 224 HLKGKQIEKLKKSGVEITD 242
++K E K S +E D
Sbjct: 161 NMK----EIAKYSEIETCD 175
>gi|225022017|ref|ZP_03711209.1| hypothetical protein CORMATOL_02049 [Corynebacterium matruchotii
ATCC 33806]
gi|224945214|gb|EEG26423.1| hypothetical protein CORMATOL_02049 [Corynebacterium matruchotii
ATCC 33806]
Length = 307
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 95/216 (43%), Gaps = 34/216 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DH GLP +++SR P TI+ PP I E V ++ S ++ L
Sbjct: 58 VFITHMHGDHTFGLPGFISSRAFRTPGDPLTIYGPPGIAEFVS--VTLNTSASHIRYPLK 115
Query: 178 LVALD-VGETYEMRNDIV-VRPFKTHHVIPSQGYVIYLLRKKLKKQ-------------- 221
+V LD GE ++D V VR H + S Y I + + Q
Sbjct: 116 VVELDHAGEVPLGQDDTVTVRYTTLDHGVQSYAYRITEADQPGELQVDKLIDHGVQPGPC 175
Query: 222 YIHLK-GKQIEKLKKSGVEITDII----LSPEVAFTGDTTSEFMLNPRNAD-ALRAKILI 275
Y LK G+ I + + D + P++ GDT P +AD A A +++
Sbjct: 176 YGQLKRGEDITLDNGTVLRSADFVGPPQSGPDIVLFGDT----RFVPGHADFAAGADLMV 231
Query: 276 TEATFLDDEMSIEHAQQHGH---THLSEDIRQAVLK 308
EAT+ + + AQ++ H T +E RQA +K
Sbjct: 232 HEATYGPEYP--DKAQKYFHSTTTQAAELARQAGVK 265
>gi|381403203|ref|ZP_09927887.1| ribonuclease Z [Pantoea sp. Sc1]
gi|380736402|gb|EIB97465.1| ribonuclease Z [Pantoea sp. Sc1]
Length = 303
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L P T++ P +K VE I S + LN
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTTPMTVYGPKGLKTFVETALAISGSYTDYPLN-- 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V ++ G T + + + + +H + GY I
Sbjct: 116 IVEIEAGWTLD-DGEFRISAWPLNHPVACFGYRI 148
>gi|417885528|ref|ZP_12529682.1| ribonuclease Z [Lactobacillus oris F0423]
gi|341595450|gb|EGS38099.1| ribonuclease Z [Lactobacillus oris F0423]
Length = 309
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 84/198 (42%), Gaps = 31/198 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR +P TI+ P IK V ++ S + L
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRFVTTALQVSES--RLSYPLH 116
Query: 178 LVALD-VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
V +D GE + R V K H I GY + L KL+ Y
Sbjct: 117 FVEIDHEGEVFHDRG-FTVTARKLDHKIACYGYRVVEADHPGELQVDKLRALNIPSGPVY 175
Query: 223 IHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILI 275
LK GK + V D I +P+ +A GDT T+ + ++AD +L+
Sbjct: 176 GQLKAGKVVTLADGRTVNGQDFIGAPQKGRIIAICGDTRKTANAVELAQDAD-----VLV 230
Query: 276 TEATFLDDEMSIEHAQQH 293
E+TF DE + + H
Sbjct: 231 HESTFAKDEPKLARSYYH 248
>gi|398794833|ref|ZP_10554827.1| ribonuclease Z [Pantoea sp. YR343]
gi|398207906|gb|EJM94648.1| ribonuclease Z [Pantoea sp. YR343]
Length = 303
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRS-----LGNV 172
+FITH H DHI GLP + SR + + +P TI+ P I++ +E + S L V
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGIPEPMTIYGPKGIRQFIETALSLSGSYTSYPLEIV 117
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
E+ LV LD GE + V + +HVI GY I
Sbjct: 118 EIEAGLV-LDDGE-------VRVTAWPMNHVIECYGYRI 148
>gi|325103868|ref|YP_004273522.1| RNAse Z [Pedobacter saltans DSM 12145]
gi|324972716|gb|ADY51700.1| RNAse Z [Pedobacter saltans DSM 12145]
Length = 303
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 34/202 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH GL ++S L KP +F P + + ++ ++ S + +L+
Sbjct: 58 IFISHLHGDHFFGLIGLISSMNLNGRRKPLNLFGPQGLLDIIQ--IQLKYSDTRLIFDLN 115
Query: 178 LVALD---VGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLK 234
ALD G YE R D V +H IP G+++ R+K +++ I LK K +EKL
Sbjct: 116 FTALDPNNTGLVYETR-DFTVETIPLNHRIPCTGFIV---REKQRQRKI-LKEK-VEKLN 169
Query: 235 ---------KSGVEIT----------DIILSPEVAFTGDTTSEFMLNPRNADAL-RAKIL 274
K G++ T D+ +V S+ +L+ R + L + L
Sbjct: 170 IPPEYYPLIKRGIDYTDSSGYVYKAFDLTTEADVPKAYAYCSDTLLDERYINKLTKVDTL 229
Query: 275 ITEATFLDDEMSIEHAQQHGHT 296
EATFL D I+ A++ H+
Sbjct: 230 YHEATFLHD--MIDRAKETHHS 249
>gi|325982780|ref|YP_004295182.1| cyclic-AMP phosphodiesterase [Nitrosomonas sp. AL212]
gi|325532299|gb|ADZ27020.1| cyclic-AMP phosphodiesterase [Nitrosomonas sp. AL212]
Length = 254
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 89/237 (37%), Gaps = 54/237 (22%)
Query: 85 GVSIGGHETCVIIPE---LKCAFDIGRCPTR-AIQQNFVFITHGHLDHIGGLPMYVASRG 140
GV G H T +++ + + +G ++ + V +TH HLDH+ +P V + G
Sbjct: 11 GVGSGAHTTAMLLDDDVLIDAGTGVGNLTIEEMVRIDHVLVTHAHLDHVAFIPFLVDTVG 70
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMR---------- 190
KP I P+ + ++K L N L D + V MR
Sbjct: 71 SMRAKPIIIHAIPATLDILQK------HLFNWYLWPDFTKIPVATMPYMRYEALALNQTL 124
Query: 191 --NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPE 248
N + P HH IP+ GY Q++ + S
Sbjct: 125 CLNQRKITPLPAHHTIPAVGY-------------------QLDSGQAS------------ 153
Query: 249 VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQH-GHTHLSEDIRQ 304
+ FTGDTT+ L K LI E+ F + + I +H + L+ED+++
Sbjct: 154 LVFTGDTTTNDALWIAVNKIENLKYLIIESAFCNRKRDIAQRSRHYCPSLLAEDLKK 210
>gi|150402080|ref|YP_001329374.1| ribonuclease Z [Methanococcus maripaludis C7]
gi|166991485|sp|A6VFJ7.1|RNZ_METM7 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|150033110|gb|ABR65223.1| ribonuclease Z [Methanococcus maripaludis C7]
Length = 310
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 103/236 (43%), Gaps = 41/236 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R I + N +FI+H H DHI G+P + S KP I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFISHLHGDHILGIPGLMQSIAFQGRTKPLNIYGPKE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ +E + + + +N+ ++ E ++ V F H +P+ YV +
Sbjct: 93 TAKMIENILNVGYHSIDYPINVYEISAKSPEKIISSDNYEVFSFPVVHSVPALAYVFKQV 152
Query: 215 RK------KLKKQYIHLKGKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTT 256
+K K+ K I + G +++LK +E+ I++P+ V ++GDT
Sbjct: 153 KKPRMDLEKVNKLGIEI-GPDLKRLKDGFNIELNGKIITPDDVTVPPKKGICVGYSGDTI 211
Query: 257 -----SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVL 307
+EF+ L+ LI EATF D+ ++A++ H+ +S+ + A L
Sbjct: 212 PLNEFAEFL------KELKCTTLIHEATF--DKSMDKNAKETLHSTVSDALNIAKL 259
>gi|73662558|ref|YP_301339.1| hypothetical protein SSP1249 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|418576116|ref|ZP_13140262.1| hypothetical protein SSME_13180 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|123642642|sp|Q49XV1.1|RNZ_STAS1 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|72495073|dbj|BAE18394.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|379325178|gb|EHY92310.1| hypothetical protein SSME_13180 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 306
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 90/223 (40%), Gaps = 40/223 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGEGKPLTLIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK +E + S +LN + +++ +N+ V +H IPS GY I
Sbjct: 96 GIKAYIETTLRLSES----KLNYPITYIEIENHLSYQNNGFNVEAHMLNHGIPSFGYRIE 151
Query: 213 LLRKKLKKQYIHLKG------------KQIEKLKKSGVEIT------DIILSPEVAFTGD 254
K LK K E + +G+ D + P +A GD
Sbjct: 152 APYTSGKIDVSALKEIGLEPGPKYQDVKNNETFEYNGIIYNSKDFKGDAVKGPVIAIFGD 211
Query: 255 TTSEFMLNPRNAD--ALRAKILITEATFLDDEMSIEHAQQHGH 295
T + +N + A A +++ E+T+++ + S+ + H H
Sbjct: 212 T-----MPCQNEEIIADHANVMVHESTYIEGDKSLANNYHHSH 249
>gi|390960643|ref|YP_006424477.1| ribonuclease Z [Thermococcus sp. CL1]
gi|390518951|gb|AFL94683.1| ribonuclease Z [Thermococcus sp. CL1]
Length = 314
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 28/183 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L++ KP I+ P E V+ + G +
Sbjct: 57 IFITHFHGDHYLGLAALIQTMNLWDREKPLHIYGPKYTFEFVQHFLQS----GFFRPGFE 112
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+ ++GET D + FK H IP+ GYV L +KL QY +G +
Sbjct: 113 VHVHELGETRLRFGDYEIWSFKVEHGIPALGYVFKEKDRRGRFLPEKL-AQYGLSEGPVL 171
Query: 231 EKLKKSG-VEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALRAKILITEA 278
+L++ G +E I+ E V +TGDT A RA +LI +A
Sbjct: 172 GRLEREGKIEWNGRIIRLEDVTGPRRKGVKVVYTGDTGPA---ERTRLFAERADLLIHDA 228
Query: 279 TFL 281
T+L
Sbjct: 229 TYL 231
>gi|332159416|ref|YP_004424695.1| ribonuclease Z [Pyrococcus sp. NA2]
gi|331034879|gb|AEC52691.1| ribonuclease Z [Pyrococcus sp. NA2]
Length = 307
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 33/189 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH G+P V + L+ + P I+ P +E L + G E D
Sbjct: 57 IFITHFHGDHYLGIPALVQTMSLWKRRDPLHIYGPEGASTFIENLLK----SGYFEPPFD 112
Query: 178 LVALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVIYLLRKK-----LKKQYIHLK-GKQI 230
++ ++ Y ++ + + F+ H IP+ GYV K+ K + + LK G +
Sbjct: 113 VIVHEIPGKYRLKFENYEIWSFEVSHGIPALGYVFKERDKRGNFDLEKIKRLGLKPGSWM 172
Query: 231 EKLKKSGV-EITDIIL-----------SPEVAFTGDTTSEFMLNPRNADAL---RAKILI 275
++L+K + EI I+ ++ +TGDT P L RA ILI
Sbjct: 173 KELEKKKILEINGTIIRLSDVTGPKKRGAKIVYTGDT------EPCENVTLFSKRATILI 226
Query: 276 TEATFLDDE 284
EAT++ +E
Sbjct: 227 HEATYVSEE 235
>gi|156937959|ref|YP_001435755.1| beta-lactamase domain-containing protein [Ignicoccus hospitalis
KIN4/I]
gi|156566943|gb|ABU82348.1| beta-lactamase domain protein [Ignicoccus hospitalis KIN4/I]
Length = 240
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 12/95 (12%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+F+ I+H H+DH GGL + + + PT SIKE E + R + + +L
Sbjct: 60 DFILISHAHVDHWGGLNFF-----RWGPEMPTF----SIKETFEHPY--FREIKDAPFSL 108
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
L+ + ET+E++ + + PF +H IP+ G+++
Sbjct: 109 KLLEVRPFETFEIKG-VKITPFPLNHSIPASGFLV 142
>gi|320536508|ref|ZP_08036539.1| ribonuclease Z [Treponema phagedenis F0421]
gi|320146648|gb|EFW38233.1| ribonuclease Z [Treponema phagedenis F0421]
Length = 308
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIH 166
R R + N +FI+H H DH+ GLP + + S + P I PP I E V E
Sbjct: 47 RLNLRWKKINVIFISHTHADHVTGLPGLLMLSSQVDRDDPLYIIGPPKIAEYV----ETS 102
Query: 167 RSLGNVELNLDLVALDV---GETYEMRNDIVVRPFKTHHVIPSQGYVI 211
R + ++ +N +++ ++ G YE + D VR F H P GY +
Sbjct: 103 RRVLDMYINYEIIIKEITEPGVVYE-QEDFHVRAFWLDHTKPCLGYTL 149
>gi|260554454|ref|ZP_05826675.1| ribonuclease Z [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|260410996|gb|EEX04293.1| ribonuclease Z [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|452950718|gb|EME56172.1| ribonuclease Z [Acinetobacter baumannii MSP4-16]
Length = 318
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 29/185 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L L
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARNNPLIVIAP---KEIQQWFEITAQLTDLHLPYSL 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL----KGKQ 229
+DV E ++ +++ ++ H +PS + IY+ +KK+ Q + KG
Sbjct: 116 QFIDVNEATQPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGVPKGDI 175
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILIT 276
LK+ VE +L + GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYDVEFEGRVLKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDAQLLIH 231
Query: 277 EATFL 281
EAT+L
Sbjct: 232 EATYL 236
>gi|389860396|ref|YP_006362635.1| ribonuclease Z [Thermogladius cellulolyticus 1633]
gi|388525299|gb|AFK50497.1| ribonuclease Z [Thermogladius cellulolyticus 1633]
Length = 250
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 73/185 (39%), Gaps = 52/185 (28%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFE--IHRSLGNVELNL 176
VFITHGH DH GL V S L + V P E V +L + L V +
Sbjct: 57 VFITHGHGDHYLGLFGLVQSMNLLGRESELNVVAP---EQVVQLISGVLESMLEKVGFEV 113
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
++V GE Y+ ND+ V P+ H + + GY++ + K
Sbjct: 114 NVVVGRTGEVYK-ENDLEVTPYPVCHTVEAHGYLVRVGDKT------------------- 153
Query: 237 GVEITDIILSPEVAFTGDT-----TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQ 291
V++TGDT EF N AKILI EATF + E A
Sbjct: 154 ------------VSYTGDTRPCPSIVEFSKN--------AKILIHEATFASEYS--EEAL 191
Query: 292 QHGHT 296
+ GH+
Sbjct: 192 KQGHS 196
>gi|313683214|ref|YP_004060952.1| metal dependent phosphohydrolase [Sulfuricurvum kujiense DSM 16994]
gi|313156074|gb|ADR34752.1| metal dependent phosphohydrolase [Sulfuricurvum kujiense DSM 16994]
Length = 800
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 90 GHETCVIIPELKCAFDIGRC-----PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNL 144
G TC+ + + D G ++ N +F TH HLDHI + + ++
Sbjct: 17 GFTTCIQVND-HTLIDAGNIMHSLGADAVVKINAIFFTHSHLDHIIDSAFLLDNVLVHRN 75
Query: 145 KPPTIF-VPPSIKEDVEKLFE--IHRSLGNVEL------NLDLVALDVGETYEMRNDIVV 195
KP T++ +P +I E F I + L +L+ V ++ + Y M +DIV+
Sbjct: 76 KPLTLYGLPETIASLKEHFFNDTIWPDFTKINLVGTHQPSLEYVEINYNQRYMMEDDIVL 135
Query: 196 RPFKTHHVIPSQGYVI 211
P ++H + GY+I
Sbjct: 136 TPIPSNHAVACCGYII 151
>gi|254166986|ref|ZP_04873839.1| ribonuclease Z [Aciduliprofundum boonei T469]
gi|197623842|gb|EDY36404.1| ribonuclease Z [Aciduliprofundum boonei T469]
Length = 308
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 90/199 (45%), Gaps = 33/199 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L K P I+ P + + K I + +
Sbjct: 60 IFITHYHGDHFLGLAGLIQTMTLNERKEPLEIYGPDRTIDILTKFLTI--GYYSPSFKIV 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------YLLRKKLKKQYIHLKGKQIE 231
L L E+ + D VV+ KT H +PS Y I + R + K + L K +E
Sbjct: 118 LYELKGNESLDF-GDYVVKVMKTKHPVPSLAYAIKEKDMPRIDRNRAKA--LGLNSKILE 174
Query: 232 KLKKS------GVEIT------DIILSPEVAFTGDTT-SEFMLNPRNADALRAKILITEA 278
KL+K+ G EIT + + ++ ++GDT E M+ + A A +LI EA
Sbjct: 175 KLRKNGKIEYEGKEITIDEVSNGVRVGRKIVYSGDTAPMEEMI----SFAANANVLIHEA 230
Query: 279 TFLDDEMSI-EHAQQHGHT 296
T E S+ E A Q+GH+
Sbjct: 231 TV---ESSLEEQANQYGHS 246
>gi|392394446|ref|YP_006431048.1| hypothetical protein Desde_2955 [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390525524|gb|AFM01255.1| hypothetical protein Desde_2955 [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 552
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 84/200 (42%), Gaps = 27/200 (13%)
Query: 105 DIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFE 164
DI R + +FITHGH DHIGGLP L L+ P ++ KL
Sbjct: 50 DITYLEKRKSKIQGIFITHGHEDHIGGLPFI-----LPKLEAPVYGTKLTMGLVRAKL-- 102
Query: 165 IHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQ---------GYVIYLLR 215
R G NL L ++ GE +MR D V F+ H +P G V+Y
Sbjct: 103 --RERGGYPENL-LRIINPGEPVKMR-DFEVEAFRVTHSVPDAVGYGILTPIGRVVY--T 156
Query: 216 KKLKKQYIHLKGKQIE--KLKKSGVEITDIIL--SPEVAFTGDTTSEFMLNPRNADAL-R 270
K Y + G++++ +L G E +L S +G T SE ++ DA R
Sbjct: 157 GDFKVDYTPIDGQEMDLGRLAAWGQEGVLALLCDSTNAERSGSTISEKVVGKTLRDAFSR 216
Query: 271 AKILITEATFLDDEMSIEHA 290
A+ I ATF + I+ A
Sbjct: 217 AEGKIIMATFASNVHRIQQA 236
>gi|427392476|ref|ZP_18886481.1| ribonuclease Z [Alloiococcus otitis ATCC 51267]
gi|425731437|gb|EKU94255.1| ribonuclease Z [Alloiococcus otitis ATCC 51267]
Length = 309
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 83/196 (42%), Gaps = 27/196 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DHI GLP +++SR P T++ PP IK V+ + ++ +++ ++
Sbjct: 59 VFITHLHGDHIFGLPGFLSSRAFQGGASPLTLYGPPGIKSFVQTALTVSKT--HLKFPIN 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKK--LKKQYIHLKG-------K 228
V G+ + V K H I S G+ I KK L Q + G
Sbjct: 117 YVEFCDGDRVLSDDHFQVTVKKVKHGIDSFGFRIVERDKKGSLNSQALKEAGVPFGPLYG 176
Query: 229 QIEKLKKSGVEITDII-----LSPE-----VAFTGDTTSEFMLNPRNAD-ALRAKILITE 277
Q++ K+ +E II + P+ + GDT P D A A +L+ E
Sbjct: 177 QLKAGKQVTLEDGRIINGKDYIGPDIPGRKITIIGDTRP----CPNTLDLAQDADVLVHE 232
Query: 278 ATFLDDEMSIEHAQQH 293
TF E + A H
Sbjct: 233 GTFSHQEKDLAKAYNH 248
>gi|227827458|ref|YP_002829237.1| ribonuclease Z [Sulfolobus islandicus M.14.25]
gi|229584673|ref|YP_002843174.1| ribonuclease Z [Sulfolobus islandicus M.16.27]
gi|238619614|ref|YP_002914439.1| ribonuclease Z [Sulfolobus islandicus M.16.4]
gi|385773135|ref|YP_005645701.1| ribonuclease Z [Sulfolobus islandicus HVE10/4]
gi|385775765|ref|YP_005648333.1| ribonuclease Z [Sulfolobus islandicus REY15A]
gi|259494140|sp|C3N554.1|RNZ_SULIA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|259494141|sp|C4KGQ7.1|RNZ_SULIK RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|259494143|sp|C3MYG0.1|RNZ_SULIM RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|227459253|gb|ACP37939.1| ribonuclease Z [Sulfolobus islandicus M.14.25]
gi|228019722|gb|ACP55129.1| ribonuclease Z [Sulfolobus islandicus M.16.27]
gi|238380683|gb|ACR41771.1| ribonuclease Z [Sulfolobus islandicus M.16.4]
gi|323474513|gb|ADX85119.1| ribonuclease Z [Sulfolobus islandicus REY15A]
gi|323477249|gb|ADX82487.1| ribonuclease Z [Sulfolobus islandicus HVE10/4]
Length = 291
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 41/220 (18%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
ITH H DH+ GL +AS GL + K I P +K+ + FE + N ++ +
Sbjct: 59 ITHMHGDHVFGLLGVIASMGLLDRKETLYILGPRDLKDFLYTSFEYSKF--NPSFKIEFI 116
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-----YLLRKKLKKQYIHLKGKQIEKLK 234
+ Y +N I + FKT H + SQGY+I + ++ ++ + + KLK
Sbjct: 117 -----DNYNDQN-ITIATFKTCHTVESQGYLISERDRVKIDEEKLEKEKIKDWRVMRKLK 170
Query: 235 KS-GVEITDIILSPE----------VAFTGDT--TSEFMLNPRNADALRAKILITEATFL 281
+ VE L PE VA+TGDT + + + D +LI ++TFL
Sbjct: 171 EGKTVEYNGKFLKPEDYLVIKRGLKVAYTGDTIPCQSVIESVKGVD-----LLIHDSTFL 225
Query: 282 DDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
++ A +GH+++++ + A+ + S K++ LT
Sbjct: 226 NE----PSACTYGHSNVADAAKVAL-----EASVKLLALT 256
>gi|41614860|ref|NP_963358.1| hypothetical protein NEQ064 [Nanoarchaeum equitans Kin4-M]
gi|56749442|sp|Q74MH2.1|RNZ_NANEQ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|40068584|gb|AAR38919.1| NEQ064 [Nanoarchaeum equitans Kin4-M]
Length = 316
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 101/229 (44%), Gaps = 42/229 (18%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLP--MYVASRGLYNLKPPTIFVPP 153
FD G R + Q +++F+TH H DHI GLP + S YN + TIF P
Sbjct: 32 FDAGENTQRQMRLLNLSPTQIDYIFLTHIHGDHILGLPGILLSLSNQDYN-RELTIFGPK 90
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV--- 210
IKE +EK+ + S + +N L ++GET + H +P Y
Sbjct: 91 GIKEVIEKIID---SFA-ININFPLKIKEIGETKIDFGPFYIESIYGIHQVPVLAYSFKE 146
Query: 211 ---IYLLRKKLKKQYIHLKGKQIEKLKKS-GVEITDIILSPE--------VAFTGDTTS- 257
I + ++KL K I ++ KLK+ V I I L P+ + FT T +
Sbjct: 147 KDKIKINKEKLAKYNIR-SNPKLAKLKEGKSVTINGITLDPKEFTYIQKGLKFTLITDTL 205
Query: 258 ---EFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIR 303
+F+ R++D I+ E FLD + + A +H H+ +S+ R
Sbjct: 206 FREQFIDFARDSD-----IIFHELAFLDKDK--DKAIEHYHSTISDAFR 247
>gi|134045752|ref|YP_001097238.1| ribonuclease Z [Methanococcus maripaludis C5]
gi|166991484|sp|A4FXT9.1|RNZ_METM5 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|132663377|gb|ABO35023.1| RNAse Z [Methanococcus maripaludis C5]
Length = 314
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 108/250 (43%), Gaps = 46/250 (18%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R I + N +FI+H H DH+ G+P + S KP I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFISHLHGDHVLGIPGLLQSIAFQGRTKPLNIYGPEE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ ++ + + + +N+ ++ E ++ V F H +P+ YV +
Sbjct: 93 TAKMIKNILNVGYHSIDYPINVYEISSKTSEKIISTDNYDVFSFPVVHSVPAVAYVFRQV 152
Query: 215 RK------KLKKQYIHLKGKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTT 256
+K K+ K I + G +++LK VE+ I++PE V ++GDT
Sbjct: 153 KKPRMDLEKVNKLGIEI-GPDLKRLKDGYNVELNGKIITPEDVTLPPKKGICVGYSGDTI 211
Query: 257 --SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQS 311
+EF AD L+ ILI EATF D+ ++A++ H+ + + L +
Sbjct: 212 PLNEF------ADFLKELKCTILIHEATF--DKTMDKNAKETLHSTVHD-----ALNIAK 258
Query: 312 KVSAKVVPLT 321
+ A V LT
Sbjct: 259 RSGANTVILT 268
>gi|410461422|ref|ZP_11315073.1| ribonuclease Z [Bacillus azotoformans LMG 9581]
gi|409925928|gb|EKN63128.1| ribonuclease Z [Bacillus azotoformans LMG 9581]
Length = 316
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IKE VE I S +++ ++
Sbjct: 61 IFITHLHGDHVFGLPGLLGSRSFQDGTSLLTIYGPRGIKEYVEVSLRI--SATHLKYPIE 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSG 237
+V ++ G +E + +V K H I S GY I + K LK +++KLKK G
Sbjct: 119 IVEIEDGVIFE-DHQFIVTAGKLEHGITSYGYRI--VEKDLKGAL------EVDKLKKLG 169
Query: 238 V 238
+
Sbjct: 170 I 170
>gi|336054229|ref|YP_004562516.1| ribonuclease Z [Lactobacillus kefiranofaciens ZW3]
gi|333957606|gb|AEG40414.1| Ribonuclease Z [Lactobacillus kefiranofaciens ZW3]
Length = 312
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 39/221 (17%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP +++R ++ P TI+ P
Sbjct: 36 FDVGEATQHQILRTNIRLRKITKIFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPTG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
I++ V+ ++ R+ + + V L D V + H IPS G+ +
Sbjct: 96 IEQFVKTALKVSRT--KISYPIKYVVLSEPGLICEDKDFRVYTDQLEHRIPSFGFRVVES 153
Query: 213 -----LLRKKLKKQYIHLKGKQIEKLKKS-GVEITD-------IILSPE-------VAFT 252
LL KL K ++ G + KLK+ V + D L PE + +
Sbjct: 154 SHSGELLMDKLAKYHVP-NGPLLGKLKRGEQVALADGTVLNGKDFLGPEKPGRIVTIIYD 212
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQH 293
+T +NAD +L+ E+TF +E + H H
Sbjct: 213 TRSTPSIARLAKNAD-----VLVHESTFAGNEAKMAHNYYH 248
>gi|432328975|ref|YP_007247119.1| ribonuclease Z [Aciduliprofundum sp. MAR08-339]
gi|432135684|gb|AGB04953.1| ribonuclease Z [Aciduliprofundum sp. MAR08-339]
Length = 305
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 98/231 (42%), Gaps = 41/231 (17%)
Query: 104 FDIGRCPTRAIQQN--------FVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R + + +FITH H DH GL + + L + K P I+ P
Sbjct: 37 FDCGEGTQRQMMRTNMSFMKIKRIFITHYHGDHFLGLAGLIQTMALNDRKEPLEIYGPER 96
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
+ + + F I + + L L+ E + D + +T H +PS Y I
Sbjct: 97 TVDILTRYFSI--GYYSTTFPVKLYELEGNEILDF-GDYTISTLRTKHPVPSLAYSIKEK 153
Query: 212 ---YLLRKKLKKQYIHLKGKQIEKLKKSG--------VEITDII----LSPEVAFTGDTT 256
+ R K K + L K +EKL++ G + I D+ + ++ ++GDT
Sbjct: 154 DMPRIDRNKAKS--MKLNSKILEKLRREGEIEYRGKTIRIEDVSNGTRIGRKIVYSGDTA 211
Query: 257 -SEFMLNPRNADALRAKILITEATFLDDEMSIE-HAQQHGHTHLSEDIRQA 305
+ M+N A A +LI EAT E S+E A ++GH+ + R A
Sbjct: 212 PMDEMINF----ARDASVLIHEAT---TESSLEDKANEYGHSSARQAARIA 255
>gi|448512382|ref|ZP_21616371.1| ribonuclease Z [Halorubrum distributum JCM 9100]
gi|448526826|ref|ZP_21619962.1| ribonuclease Z [Halorubrum distributum JCM 10118]
gi|445694350|gb|ELZ46480.1| ribonuclease Z [Halorubrum distributum JCM 9100]
gi|445698506|gb|ELZ50549.1| ribonuclease Z [Halorubrum distributum JCM 10118]
Length = 310
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 104/262 (39%), Gaps = 45/262 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF++H H DH+ G+P V + G + P T+ P
Sbjct: 35 FDCGEGTQREMMRAGTGFAVDRVFVSHLHGDHVLGIPGLVQTLGFNDRTDPLTVHCPLGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ + L +H + + + + GE ++ VR F+T H SQGYV+
Sbjct: 95 DDHLHDL--VHAVGHDPAFPVRIEPVAPGEVAYETDEYEVRAFETEHRTVSQGYVLEEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R K + + + +G+ +E + VE ++ P ++ +T DT
Sbjct: 153 RPGRFDRPKAEALGVPVGPKFGRLHEGESVEAEDGTVVEPEQVVGPPRPGRKLVYTADT- 211
Query: 257 SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-------RQAV 306
PR A A A +LI +ATF DD H + I R A+
Sbjct: 212 -----RPREATVEAAKDADLLIHDATFADDMADRARDTAHSTGREAGSIADRADAKRLAL 266
Query: 307 LKLQSKVSAKVVPLTEGFKSVY 328
+ + S+ +A P+ + +
Sbjct: 267 VHISSRYAADARPIRRDAREAF 288
>gi|375362918|ref|YP_005130957.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|421731099|ref|ZP_16170225.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|451346411|ref|YP_007445042.1| ribonuclease Z [Bacillus amyloliquefaciens IT-45]
gi|371568912|emb|CCF05762.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|407075253|gb|EKE48240.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|449850169|gb|AGF27161.1| ribonuclease Z [Bacillus amyloliquefaciens IT-45]
Length = 308
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 34/202 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK +E + + ++ L
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLNV--TATHLTYPLT 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ ++ G +E + IV H V + GY + L +LK+ I G
Sbjct: 117 VHEIEEGTVFEDEHFIVTAASVIHGV-EAFGYRVQEKDIPGALQAGRLKEMNIP-PGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLN--PRNADALRAKIL 274
+KLKK G +T D + SP+ VAF+GDT + + RNAD +L
Sbjct: 175 QKLKK-GETVTLDDGRIINGRDFLESPKKGRIVAFSGDTRASERVTELARNAD-----VL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHT 296
+ EATF ++ + H H T
Sbjct: 229 VHEATFAKEDAKLAHNYYHATT 250
>gi|149199049|ref|ZP_01876089.1| Metal-dependent Hydrolase of the beta-lactamase superfamily III
[Lentisphaera araneosa HTCC2155]
gi|149137838|gb|EDM26251.1| Metal-dependent Hydrolase of the beta-lactamase superfamily III
[Lentisphaera araneosa HTCC2155]
Length = 352
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT--IFVPPSIKEDVEKLFEIHRSLGNVEL 174
N +FITH H DH GL + SRGL + IF P IKE ++ + ++ S N+
Sbjct: 73 NKIFITHMHGDHCYGLFGLLTSRGLMSGGEEAVHIFGPKGIKEMIKTVLKL--SYVNLSA 130
Query: 175 NLDLVALD-VGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
L D G+ +E ++ +V + H +PS GYV+
Sbjct: 131 PLTFTEFDEAGDLFE-DDEFIVSNVRLSHDVPSWGYVV 167
>gi|15614276|ref|NP_242579.1| hypothetical protein BH1713 [Bacillus halodurans C-125]
gi|41017582|sp|Q9KC61.1|RNZ_BACHD RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|10174330|dbj|BAB05432.1| BH1713 [Bacillus halodurans C-125]
Length = 309
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 27/207 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P ++ P I+ VE ++ + EL ++
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGENPLFLYGPKGIRSFVETALQVSNTHVKYELTIE 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIH------ 224
+ + G + V HV+P + + LL +LK + +
Sbjct: 119 EFS-EPGLLFH-EEGFKVETILLDHVMPCYAFKVTEDDRPGELLVDRLKAKGVPPGPLYR 176
Query: 225 --LKGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
+G+ +E +E + P+ GDT L P A +LI EA
Sbjct: 177 KIQQGETVELPTGERLEANAFLGPPKRGRSFVLAGDTRPVKELIPF---AKNVNVLIHEA 233
Query: 279 TFLDDEMSIEHAQQHGHTHLSEDIRQA 305
TFLDD+ HA ++GH+ +++ I+ A
Sbjct: 234 TFLDDKKG--HAHEYGHSTMADAIQLA 258
>gi|345862528|ref|ZP_08814748.1| ribonuclease Z [Desulfosporosinus sp. OT]
gi|344324388|gb|EGW35946.1| ribonuclease Z [Desulfosporosinus sp. OT]
Length = 303
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 28/213 (13%)
Query: 110 PTRAIQQNF-----VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLF 163
P R F V TH H DHI GLP + + G KP T+ PP +K+ VE L
Sbjct: 43 PLRMAAWGFKTIDAVLFTHYHGDHIAGLPGLLLTIGNSGREKPLTLLGPPGLKKVVEGLT 102
Query: 164 EIHRSLGNVELNLDLVALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVIYLLRKKL---- 218
I L LDL+ L E+ E D+ ++ H +P Y + L R+
Sbjct: 103 VIAPLL---PFELDLIELSDMESAETHIGDLNIKSIPVEHTLPCLSYCLELKRQGRFNVE 159
Query: 219 KKQYIHLKGKQIEKLKKSGVEIT--DIILSPEVAFTGDTTSE----FMLNPRNADAL--- 269
+ + + + +L+K GV I D I+SP++ G+T + + R + L
Sbjct: 160 RAKQLGIPVSYWSRLQK-GVTIILEDQIVSPQMVL-GETRKGIKVCYCTDTRPTEGLIEF 217
Query: 270 --RAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
+ + I E + DE + A Q H SE
Sbjct: 218 IEGSDLFICEGMY-GDEDDLSKAIQKKHMMFSE 249
>gi|445400654|ref|ZP_21430125.1| putative ribonuclease Z [Acinetobacter baumannii Naval-57]
gi|444783228|gb|ELX07089.1| putative ribonuclease Z [Acinetobacter baumannii Naval-57]
Length = 318
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 29/185 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L +
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLHLPYSI 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL----KGKQ 229
+DV E ++ +++ ++ H +PS + IY+ +KK+ Q + KG
Sbjct: 116 KFIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGVPKGDI 175
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILIT 276
LK+ VE IL + GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDAQLLIH 231
Query: 277 EATFL 281
EAT+L
Sbjct: 232 EATYL 236
>gi|336114307|ref|YP_004569074.1| ribonuclease Z [Bacillus coagulans 2-6]
gi|335367737|gb|AEH53688.1| ribonuclease Z [Bacillus coagulans 2-6]
Length = 305
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 97/224 (43%), Gaps = 35/224 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++ SR P T++ P K VE ++ + +++ L+
Sbjct: 59 IFITHLHGDHIFGLPGFLGSRSFQGGNGPLTVYGPKGTKAFVEVSLKVSET--HLKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIH------ 224
++ ++ G +E + +V + H I S GY I L +LKK+ I
Sbjct: 117 IIEIEEGTVFE-DDRFMVCALRLDHGIESFGYRIAEKDKPGALDADQLKKEGIRPGPVYR 175
Query: 225 -LKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNAD---ALRAKILI 275
LK + L+ V L P +A GDT P A A A +LI
Sbjct: 176 LLKEGRTVTLEDGRVISGKDYLGPAKKGKIIAILGDT------RPNEAAIRLAANADLLI 229
Query: 276 TEATFLDDEMSIEHAQQHGHT-HLSEDIRQAVLK--LQSKVSAK 316
EATF + + H H T ++ +QA K L + +SA+
Sbjct: 230 HEATFNKESGQMAHDYFHSTTADAAQTAKQAGAKRLLLTHISAR 273
>gi|284044651|ref|YP_003394991.1| ribonuclease Z [Conexibacter woesei DSM 14684]
gi|283948872|gb|ADB51616.1| ribonuclease Z [Conexibacter woesei DSM 14684]
Length = 328
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 26/192 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DH GLP + + L KP TI PP +++ + + + G E+ L
Sbjct: 57 VFITHFHADHWLGLPGMLKTFDLRARDKPLTIHGPPGLRKLMNDMRYVWGGCG-YEITLS 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQIE 231
+ D R++ V+ PF +H + GYVI +L +Q G
Sbjct: 116 ELPPDA---MVERDEYVIEPFLVNHRGTAYGYVITEDDRPGRFDAQLAEQLGVTPGPDFG 172
Query: 232 KLKK----SGVEITDII----LSPEVAFTGDT--TSEFMLNPRNADALRAKILITEATFL 281
+L++ GV +I L ++ +GDT E + AD +L+ EATF
Sbjct: 173 RLQRGETIGGVRPEQVIGETRLGRKLVISGDTGPCEELIEIAHGAD-----VLVHEATFT 227
Query: 282 DDEMSIEHAQQH 293
+E QH
Sbjct: 228 QEEADRARQTQH 239
>gi|427400749|ref|ZP_18891987.1| ribonuclease Z [Massilia timonae CCUG 45783]
gi|425720262|gb|EKU83185.1| ribonuclease Z [Massilia timonae CCUG 45783]
Length = 320
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 25/196 (12%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R P + VFITH H DH GLP +AS GL P TI PP ++ +E + +
Sbjct: 47 RTPLSVMSLRAVFITHMHGDHCYGLPGLLASAGLLGRSEPLTIVGPPPLRTMIECIMQA- 105
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQ--GYVIYLLRKKLKKQYIH 224
S ++ L + D + D+ V H IPS G+ + ++L + +
Sbjct: 106 -SELSLPFPLAWLTPDDLAHGPLLPDLAVDATALSHRIPSWAYGFTEAAIERRLDTEKLR 164
Query: 225 L-------------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNAD 267
+G+ + + D +L P + GD S +L A
Sbjct: 165 ADAVPSSALWGEIQQGRDVVLPDGRAITAADYLLPPRRARRIVVAGDNDSPELL---AAG 221
Query: 268 ALRAKILITEATFLDD 283
A A +L+ EAT+ ++
Sbjct: 222 AQGADVLVHEATYTEE 237
>gi|253576741|ref|ZP_04854068.1| ribonuclease Z [Paenibacillus sp. oral taxon 786 str. D14]
gi|251843951|gb|EES71972.1| ribonuclease Z [Paenibacillus sp. oral taxon 786 str. D14]
Length = 312
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 88/220 (40%), Gaps = 38/220 (17%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R P + + ++FITH H DH+ GLP ++SR P I+ P
Sbjct: 36 FDCGEGTQHQILRSPLKLSKLEYIFITHLHGDHLFGLPGLISSRAYQGGDTPLVIYGPKG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
+K+ VE + S + L+LV G +E + V H I S GY +
Sbjct: 96 LKKFVETALSLSES--RINYKLELVEHQGGVLFE-DDSFRVEAALLEHRIDSYGYRVIEK 152
Query: 212 ---------YLLRKKLKKQYIHLKGKQIEKL---KKSGVEITDIILSPE----VAFTGDT 255
L R ++ ++ K K+ E + V D++ P+ V GDT
Sbjct: 153 DLPGKLDSAVLERCGIRPGPLYGKLKRGESVVAPNGETVHAKDVLGMPKAGRIVTILGDT 212
Query: 256 --TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQH 293
+ +NAD +L+ EATFL + H H
Sbjct: 213 RPCESVLTLAQNAD-----MLVHEATFLHELAKTAHDYHH 247
>gi|169795341|ref|YP_001713134.1| ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Acinetobacter
baumannii AYE]
gi|213158673|ref|YP_002319971.1| ribonuclease Z [Acinetobacter baumannii AB0057]
gi|215482875|ref|YP_002325078.1| ribonuclease Z [Acinetobacter baumannii AB307-0294]
gi|301347162|ref|ZP_07227903.1| Ribonuclease Z [Acinetobacter baumannii AB056]
gi|301511969|ref|ZP_07237206.1| Ribonuclease Z [Acinetobacter baumannii AB058]
gi|301595649|ref|ZP_07240657.1| Ribonuclease Z [Acinetobacter baumannii AB059]
gi|332850452|ref|ZP_08432772.1| putative ribonuclease Z [Acinetobacter baumannii 6013150]
gi|332871904|ref|ZP_08440316.1| putative ribonuclease Z [Acinetobacter baumannii 6013113]
gi|417573750|ref|ZP_12224604.1| putative ribonuclease Z [Acinetobacter baumannii Canada BC-5]
gi|421620409|ref|ZP_16061346.1| putative ribonuclease Z [Acinetobacter baumannii OIFC074]
gi|421642704|ref|ZP_16083216.1| putative ribonuclease Z [Acinetobacter baumannii IS-235]
gi|421646873|ref|ZP_16087312.1| putative ribonuclease Z [Acinetobacter baumannii IS-251]
gi|421660284|ref|ZP_16100484.1| putative ribonuclease Z [Acinetobacter baumannii Naval-83]
gi|421701088|ref|ZP_16140596.1| putative ribonuclease Z [Acinetobacter baumannii IS-58]
gi|421795459|ref|ZP_16231542.1| putative ribonuclease Z [Acinetobacter baumannii Naval-21]
gi|421802277|ref|ZP_16238230.1| putative ribonuclease Z [Acinetobacter baumannii Canada BC1]
gi|169148268|emb|CAM86133.1| Ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Acinetobacter
baumannii AYE]
gi|213057833|gb|ACJ42735.1| ribonuclease Z [Acinetobacter baumannii AB0057]
gi|213986249|gb|ACJ56548.1| Ribonuclease Z [Acinetobacter baumannii AB307-0294]
gi|332730723|gb|EGJ62034.1| putative ribonuclease Z [Acinetobacter baumannii 6013150]
gi|332731118|gb|EGJ62419.1| putative ribonuclease Z [Acinetobacter baumannii 6013113]
gi|400209318|gb|EJO40288.1| putative ribonuclease Z [Acinetobacter baumannii Canada BC-5]
gi|404568142|gb|EKA73248.1| putative ribonuclease Z [Acinetobacter baumannii IS-58]
gi|408512156|gb|EKK13802.1| putative ribonuclease Z [Acinetobacter baumannii IS-235]
gi|408517019|gb|EKK18570.1| putative ribonuclease Z [Acinetobacter baumannii IS-251]
gi|408700704|gb|EKL46152.1| putative ribonuclease Z [Acinetobacter baumannii OIFC074]
gi|408705308|gb|EKL50650.1| putative ribonuclease Z [Acinetobacter baumannii Naval-83]
gi|410401956|gb|EKP54091.1| putative ribonuclease Z [Acinetobacter baumannii Naval-21]
gi|410404074|gb|EKP56147.1| putative ribonuclease Z [Acinetobacter baumannii Canada BC1]
Length = 318
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 29/185 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L +
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLHLPYSI 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL----KGKQ 229
+DV E ++ +++ ++ H +PS + IY+ +KK+ Q + KG
Sbjct: 116 KFIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQVLTQLGVPKGDI 175
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILIT 276
LK+ VE IL + GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDAQLLIH 231
Query: 277 EATFL 281
EAT+L
Sbjct: 232 EATYL 236
>gi|417552171|ref|ZP_12203241.1| putative ribonuclease Z [Acinetobacter baumannii Naval-81]
gi|417562383|ref|ZP_12213262.1| putative ribonuclease Z [Acinetobacter baumannii OIFC137]
gi|421198101|ref|ZP_15655268.1| putative ribonuclease Z [Acinetobacter baumannii OIFC109]
gi|421457009|ref|ZP_15906346.1| putative ribonuclease Z [Acinetobacter baumannii IS-123]
gi|421632144|ref|ZP_16072806.1| putative ribonuclease Z [Acinetobacter baumannii Naval-13]
gi|421804099|ref|ZP_16240009.1| putative ribonuclease Z [Acinetobacter baumannii WC-A-694]
gi|395524965|gb|EJG13054.1| putative ribonuclease Z [Acinetobacter baumannii OIFC137]
gi|395566069|gb|EJG27714.1| putative ribonuclease Z [Acinetobacter baumannii OIFC109]
gi|400206733|gb|EJO37704.1| putative ribonuclease Z [Acinetobacter baumannii IS-123]
gi|400392430|gb|EJP59476.1| putative ribonuclease Z [Acinetobacter baumannii Naval-81]
gi|408710280|gb|EKL55510.1| putative ribonuclease Z [Acinetobacter baumannii Naval-13]
gi|410411470|gb|EKP63339.1| putative ribonuclease Z [Acinetobacter baumannii WC-A-694]
Length = 318
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 29/185 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L +
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLHLPYSI 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL----KGKQ 229
+DV E ++ +++ ++ H +PS + IY+ +KK+ Q + KG
Sbjct: 116 KFIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQVLTQLGVSKGDI 175
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILIT 276
LK+ VE IL + GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDAQLLIH 231
Query: 277 EATFL 281
EAT+L
Sbjct: 232 EATYL 236
>gi|377576560|ref|ZP_09805544.1| ribonuclease BN [Escherichia hermannii NBRC 105704]
gi|377542592|dbj|GAB50709.1| ribonuclease BN [Escherichia hermannii NBRC 105704]
Length = 304
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI GLP + SR + N P T++ P I++ +E ++ S
Sbjct: 57 NKIFITHLHGDHIFGLPGLLCSRSMAGNENPLTVYGPAGIRQFIEMALQLSGSW--TGFP 114
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
L++V + GE + + V + H + GY I
Sbjct: 115 LEIVEITAGEVF-CDEEFRVTAYPLTHPVECYGYRI 149
>gi|116618569|ref|YP_818940.1| beta-lactamase superfamily hydrolase [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|122271231|sp|Q03W55.1|RNZ_LEUMM RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|116097416|gb|ABJ62567.1| RNAse Z [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
Length = 318
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 34/222 (15%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + +FITH H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFITHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVI 211
+KE V+ I + + ++ V L G +E +V P + H I + G+ +
Sbjct: 96 KGVKEFVQTALRISET--RLSYPIEYVDLTEGVIFEDHTFQVVAAPMR--HRIETWGFRV 151
Query: 212 Y-------LLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPEVAFTGDTTS----EF 259
LL KLK+ I G +LK V + D + F G F
Sbjct: 152 IEKDHPGELLVDKLKQGNIP-SGPVYGQLKAGKTVTLPDGRIVNGHDFIGKAQKGRIVTF 210
Query: 260 MLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHT 296
+L+ R D A A +L+ E+T+ E + A+ H H+
Sbjct: 211 ILDTRPNDNVEWLAKNADVLVHESTYGSSEEEAKMAKAHAHS 252
>gi|341820573|emb|CCC56855.1| ribonuclease Z [Weissella thailandensis fsh4-2]
Length = 343
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 102/242 (42%), Gaps = 43/242 (17%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD+G R R + +FITH H DHI GLP ++SR + TI+ P
Sbjct: 53 FDVGEGTQRQMLRSTIRPRKVTKIFITHLHGDHIYGLPGLLSSRSFQGGEDALTIYGPKG 112
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY- 212
I++ VE + ++ ++ + V L + G V H I S GY +
Sbjct: 113 IRQFVEVSLRVSQT--HLTYPIKFVELPETGGDVLQTEKFTVSALPLDHRITSFGYRVTE 170
Query: 213 ------LLRKKLKK-------QYIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGD 254
LL ++L++ Y LK GK + + D+I P+ VA GD
Sbjct: 171 HAHPGELLVERLRELNVPAGPLYGQLKQGKDVTLADGRTIHGADVIGDPQPGRCVAIMGD 230
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSK 312
T T M RNAD +L+ E+T+ E + A+ H H + ++ A + Q++
Sbjct: 231 TRKTDNTMTLARNAD-----VLVHESTYGKGEG--KQARNHFH---ATSVQAATIADQAQ 280
Query: 313 VS 314
V
Sbjct: 281 VG 282
>gi|302338444|ref|YP_003803650.1| ribonuclease Z [Spirochaeta smaragdinae DSM 11293]
gi|301635629|gb|ADK81056.1| ribonuclease Z [Spirochaeta smaragdinae DSM 11293]
Length = 309
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 119 VFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + + S + +P TI PP IKE V E RS+ ++ +N +
Sbjct: 58 IFISHTHADHVTGLPGIMMLSSQVDREEPLTIIGPPKIKEYV----ETARSVLDMYINYE 113
Query: 178 LVALDVGETYEMRN--DIVVRPFKTHHVIPSQGYVI 211
++ ++ E+ VR F H P GYV+
Sbjct: 114 VIIKEINAPCEVYRGEGYAVRAFPLLHSKPCVGYVL 149
>gi|115479027|ref|NP_001063107.1| Os09g0397900 [Oryza sativa Japonica Group]
gi|50252615|dbj|BAD28786.1| putative FEG protein [Oryza sativa Japonica Group]
gi|113631340|dbj|BAF25021.1| Os09g0397900 [Oryza sativa Japonica Group]
gi|218202115|gb|EEC84542.1| hypothetical protein OsI_31281 [Oryza sativa Indica Group]
gi|222641522|gb|EEE69654.1| hypothetical protein OsJ_29268 [Oryza sativa Japonica Group]
Length = 559
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 43/186 (23%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN---LKPPTIFVPPSIKEDVEKLFEIHRSLGN---- 171
V ITH HLDHIG LP + G + + PT + P + ED K+ HR
Sbjct: 66 VVITHFHLDHIGALPYFTEVCGYHGPVYMTYPTKALAPLMLEDYRKVMVDHRGEEEQYSY 125
Query: 172 ---VELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGK 228
+ ++ LD+ +T ++ D+ +R + HV+ + +IY
Sbjct: 126 EDILRCMRKVIPLDLKQTIQVDKDLSIRAYYAGHVLGAA--MIY---------------- 167
Query: 229 QIEKLKKSGVEITDIILSPEVAFTGD--TTSEFMLNPRNADALRAKILITEATFLDDEMS 286
K G + +TGD T + L D L+ +LITE+T+
Sbjct: 168 -----AKVG--------DAAIVYTGDYNMTPDRHLGAAQIDRLKLDLLITESTYAKTVRD 214
Query: 287 IEHAQQ 292
+HA++
Sbjct: 215 SKHARE 220
>gi|338997225|ref|ZP_08635926.1| metallo-beta-lactamase family protein [Halomonas sp. TD01]
gi|338765822|gb|EGP20753.1| metallo-beta-lactamase family protein [Halomonas sp. TD01]
Length = 320
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 27/198 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ ITH H DH GLP +AS + K P TI P SIK +E E+ + + L+
Sbjct: 58 ILITHVHGDHCYGLPGILASAAMGGRKAPLTIVAPASIKTWLEATCEVTQLC--LPFALE 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGY------------VIYLLRKKLKKQYIHL 225
+A D + E N I V F H + S Y V L +K + + +
Sbjct: 116 FIASDDLPSVEFEN-IAVETFSLSHRVASYAYAFTERKVDAVLDVAKLAQKGIPRGPLWG 174
Query: 226 KGKQIEKLKKSGVEIT--DIIL---SP-EVAFTGDTTSEFMLNPRNADALRAKILITEAT 279
+ KQ ++ +G + D ++ +P +V GD +LN A+ A++L+ EAT
Sbjct: 175 QLKQGFDIEFAGERLKSHDYLIFKNTPRKVVIAGDNDQPDLLNEACAE---AQVLVHEAT 231
Query: 280 FLDDEMSIEHAQQHGHTH 297
+ +EM+ + A GH++
Sbjct: 232 Y-TEEMA-QKAGDVGHSY 247
>gi|229578965|ref|YP_002837363.1| ribonuclease Z [Sulfolobus islandicus Y.G.57.14]
gi|229582282|ref|YP_002840681.1| ribonuclease Z [Sulfolobus islandicus Y.N.15.51]
gi|284997568|ref|YP_003419335.1| ribonuclease Z [Sulfolobus islandicus L.D.8.5]
gi|259494144|sp|C3NHZ9.1|RNZ_SULIN RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|259494145|sp|C3NDQ2.1|RNZ_SULIY RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|228009679|gb|ACP45441.1| ribonuclease Z [Sulfolobus islandicus Y.G.57.14]
gi|228012998|gb|ACP48759.1| ribonuclease Z [Sulfolobus islandicus Y.N.15.51]
gi|284445463|gb|ADB86965.1| ribonuclease Z [Sulfolobus islandicus L.D.8.5]
Length = 291
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 41/220 (18%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
ITH H DH+ GL +AS GL + K I P +K+ + FE + N ++ +
Sbjct: 59 ITHMHGDHVFGLLGVIASMGLLDRKETLYILGPRDLKDFLYTSFEYSKF--NPSFKIEFI 116
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-----YLLRKKLKKQYIHLKGKQIEKLK 234
+ Y +N I + FKT H + SQGY+I + ++ ++ + + KLK
Sbjct: 117 -----DNYNDQN-ITIATFKTCHTVESQGYLISERDRVKIDEEKLEKEKIKDWRVMRKLK 170
Query: 235 KS-GVEITDIILSPE----------VAFTGDT--TSEFMLNPRNADALRAKILITEATFL 281
+ VE L PE VA+TGDT + + + D +LI ++TFL
Sbjct: 171 EGKTVEYNGKFLKPEDYLVIKRGLKVAYTGDTIPCQSVIESVKGVD-----LLIHDSTFL 225
Query: 282 DDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
++ A +GH+++++ + A+ + S K++ LT
Sbjct: 226 NE----PSAFTYGHSNVADAAKVAL-----EASVKLLALT 256
>gi|48477347|ref|YP_023053.1| metal dependent hydrolase [Picrophilus torridus DSM 9790]
gi|48429995|gb|AAT42860.1| metal dependent hydrolase [Picrophilus torridus DSM 9790]
Length = 228
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 60/208 (28%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
N V ITH HLDH GL + R + N P I P +I++ ++KL +++ S N
Sbjct: 51 NPVLITHMHLDHFSGLIELIWHRSMSNCDPLLIIGPENIEDSIKKLLKLYYSPENF---Y 107
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
+ LD E F H P GY I +++K
Sbjct: 108 NFKVLDKFNGIER--------FNGKHPAPDYGYRI-----------------EMDK---- 138
Query: 237 GVEITDIILSPEVAFTGDTT-SEFMLNPRNADALRAKILITEATF---LDDEMSIEHAQQ 292
+ F+GDT+ S+ ++N A ++ +L+ EAT+ +++E A
Sbjct: 139 -----------TLFFSGDTSLSDEIIN----GAYKSDVLMHEATYPSGMENE-----AAL 178
Query: 293 HGHTHLSEDIRQAVLKLQSKVSAKVVPL 320
HGH+ +S QA+ + SA +VP+
Sbjct: 179 HGHSTVS----QAIEAFKRSGSAMLVPM 202
>gi|421697441|ref|ZP_16137004.1| putative ribonuclease Z [Acinetobacter baumannii WC-692]
gi|404558202|gb|EKA63486.1| putative ribonuclease Z [Acinetobacter baumannii WC-692]
Length = 324
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 29/185 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ I + P +++++ FEI L ++ L L
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARSKLLIVIAP---KEIQQWFEITAQLTDLHLPYSL 115
Query: 179 VALDVGETY---EMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------------ 221
+DV E ++ ++ +V+ H +PS + IY+ ++KKL Q
Sbjct: 116 QFIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGVPQGDI 175
Query: 222 YIHLKGKQIEKLKKSGVEITDII----LSPEVAFTGDTTSEFMLNPRNADALR-AKILIT 276
+ HLK + + ++ D I GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYNVEFEGRTLKAQDFIKVQNQQVHAIIGGDNDQPELL----ADACKDAQLLIH 231
Query: 277 EATFL 281
E+T+L
Sbjct: 232 ESTYL 236
>gi|169632990|ref|YP_001706726.1| ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Acinetobacter
baumannii SDF]
gi|169151782|emb|CAP00601.1| Ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Acinetobacter
baumannii]
Length = 318
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 29/185 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L +
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARNNPLIVIAP---KEIQQWFEITAQLTDLHLPYSI 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL----KGKQ 229
+DV E ++ +++ ++ H +PS + IY+ +KK+ Q + KG
Sbjct: 116 KFIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGIPKGDI 175
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILIT 276
LK+ VE IL + GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDAQLLIH 231
Query: 277 EATFL 281
EAT+L
Sbjct: 232 EATYL 236
>gi|421651875|ref|ZP_16092242.1| putative ribonuclease Z [Acinetobacter baumannii OIFC0162]
gi|425750040|ref|ZP_18868007.1| putative ribonuclease Z [Acinetobacter baumannii WC-348]
gi|445460325|ref|ZP_21448234.1| putative ribonuclease Z [Acinetobacter baumannii OIFC047]
gi|408507808|gb|EKK09502.1| putative ribonuclease Z [Acinetobacter baumannii OIFC0162]
gi|425487442|gb|EKU53800.1| putative ribonuclease Z [Acinetobacter baumannii WC-348]
gi|444773560|gb|ELW97656.1| putative ribonuclease Z [Acinetobacter baumannii OIFC047]
Length = 318
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 29/185 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L +
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLHLPYSI 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL----KGKQ 229
+DV E ++ +++ ++ H +PS + IY+ +KK+ Q + KG
Sbjct: 116 KFIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGIPKGDI 175
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILIT 276
LK+ VE IL + GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDAQLLIH 231
Query: 277 EATFL 281
EAT+L
Sbjct: 232 EATYL 236
>gi|269986720|gb|EEZ93000.1| beta-lactamase domain protein [Candidatus Parvarchaeum acidiphilum
ARMAN-4]
Length = 236
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV-PPSIKEDVEKLFEIHRSLGNVELNLD 177
V ITH HLDH GLP R ++N + I + P IK + EKL + ++ ++N +
Sbjct: 53 VAITHMHLDHFSGLPELFWYRAIHNAQNKLIVLGPEGIKNNTEKLLKTLQTPKEFKVNAE 112
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
V + + D ++ PF+ H++ GY +
Sbjct: 113 FVE-------DKKYDFIM-PFRARHLVIDNGYRV 138
>gi|257457947|ref|ZP_05623106.1| ribonuclease Z [Treponema vincentii ATCC 35580]
gi|257444660|gb|EEV19744.1| ribonuclease Z [Treponema vincentii ATCC 35580]
Length = 308
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIH 166
R R + N +FI+H H DH+ GLP + + S + +P I PP IKE + E
Sbjct: 47 RLNLRWKKINTIFISHTHADHVTGLPGILMLSAQVDRDEPLYIIGPPKIKEYI----ETS 102
Query: 167 RSLGNVELNLDLVALDVGE---TYEMRNDIVVRPFKTHHVIPSQGYVI 211
R + ++ +N +++ ++ E Y+ ++ VR F H P GYV
Sbjct: 103 RQVLDMYINYEIIIKEITEPGIVYKT-DEFQVRAFWLEHTKPCLGYVF 149
>gi|345559789|gb|EGX42921.1| hypothetical protein AOL_s00215g870 [Arthrobotrys oligospora ATCC
24927]
Length = 438
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 197 PFKTH-----------HVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIIL 245
P KTH H +PS G++ +LK +Y L G +++ L++ GV+IT
Sbjct: 255 PLKTHPTISVSILPRSHTVPSVGFLFTQTSNRLKSEYRSLPGTELKNLRQQGVDITYQHR 314
Query: 246 SPEVAFTGD-------TTSEFMLNPRNADALRAKILITEATFL 281
+P AF GD E+++ + ++ITE +FL
Sbjct: 315 TPIFAFLGDGDHTSLLGDPEWLVGNEDKGISGCPVVITECSFL 357
>gi|417654474|ref|ZP_12304193.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21193]
gi|417797458|ref|ZP_12444654.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21305]
gi|329730860|gb|EGG67238.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21193]
gi|334266950|gb|EGL85420.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21305]
Length = 306
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 93/224 (41%), Gaps = 42/224 (18%)
Query: 104 FDIGRCPTRAIQQN--------FVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK V E+ +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYV----EMSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
T ++E +++ RNAD +++ EAT++D E + + H H
Sbjct: 212 TKPCSNEHVIS-RNAD-----VMVHEATYIDGEKHLANNYHHSH 249
>gi|421664435|ref|ZP_16104575.1| putative ribonuclease Z [Acinetobacter baumannii OIFC110]
gi|408712732|gb|EKL57915.1| putative ribonuclease Z [Acinetobacter baumannii OIFC110]
Length = 324
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 29/185 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ I + P +++++ FEI L ++ L L
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARSKLLIVIAP---KEIQQWFEITAQLTDLHLPYSL 115
Query: 179 VALDVGETY---EMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------------ 221
+DV E ++ ++ +V+ H +PS + IY+ ++KKL Q
Sbjct: 116 QFIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGVPQGDI 175
Query: 222 YIHLKGKQIEKLKKSGVEITDII----LSPEVAFTGDTTSEFMLNPRNADALR-AKILIT 276
+ HLK + + ++ D I GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYNVEFEGRTLKAQDFIKVQNQQVHAIIGGDNDQPELL----ADACKDAQLLIH 231
Query: 277 EATFL 281
E+T+L
Sbjct: 232 ESTYL 236
>gi|323488957|ref|ZP_08094194.1| ribonuclease Z [Planococcus donghaensis MPA1U2]
gi|323397349|gb|EGA90158.1| ribonuclease Z [Planococcus donghaensis MPA1U2]
Length = 314
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 39/234 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR +P I+ P IKE ++ + R+ L
Sbjct: 59 IFITHMHGDHIFGLPGLLGSRSFQAGEEPLEIYGPVGIKEYIQMTLTLSRT----HLTYP 114
Query: 178 LVALDVGETYEMRNDIV-VRPFKTHHVIPSQGYVIY---LLRKKLKKQYIHL---KGKQI 230
+V ++ E ++++ V HVIPS G+ I L K L + + L KG +
Sbjct: 115 IVYHELSEGMIFEDELMTVETRLLDHVIPSYGFRITQKPLPPKLLINKALSLGVPKGPLL 174
Query: 231 EKLKKS-GVEITD-------IILSPE-----VAFTGDT--TSEFMLNPRNADALRAKILI 275
KLK +E+ D + PE + GDT + R AD +L+
Sbjct: 175 AKLKTGQDIELADGQWVRSGDVTEPEQPGFVMTILGDTRFCKTAVELGRGAD-----VLV 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLK-----LQSKVSAKVVPLTEGF 324
EATF D + + A ++GH + + A L + + +SA+ +P E F
Sbjct: 230 HEATF--DATAKKMAAEYGHATVYDAAETARLAGANTLIMNHISARFLPEDEKF 281
>gi|308188524|ref|YP_003932655.1| ribonuclease Z [Pantoea vagans C9-1]
gi|308059034|gb|ADO11206.1| ribonuclease Z [Pantoea vagans C9-1]
Length = 303
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L P T++ P +K VE I S + LN
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTSPMTVYGPRGLKTFVETALSISGSYTDYPLN-- 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+V ++ G T + + + + H + GY I L ++LK + + +G
Sbjct: 116 IVEIEAGWTLD-DGEFRISAWPLSHPVECFGYRIEQHDKPGLLDAERLKAEGVP-RGPWF 173
Query: 231 EKLKKS 236
++LK+
Sbjct: 174 QQLKQG 179
>gi|448497735|ref|ZP_21610549.1| ribonuclease Z [Halorubrum coriense DSM 10284]
gi|445699476|gb|ELZ51501.1| ribonuclease Z [Halorubrum coriense DSM 10284]
Length = 310
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 106/262 (40%), Gaps = 45/262 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF++H H DH+ G+P V + G + P TI PP
Sbjct: 35 FDCGEGTQREMMRSGTGFAVDRVFVSHLHGDHVLGIPGLVQTLGFNDRTDPLTIHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ L +H + + + ++ G ++ VR F+T H SQGYV+
Sbjct: 95 GGQLHDL--VHAVGHDPAFPVRVEPVEPGAVAFETDEYEVRAFETEHRTVSQGYVLEEAD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R + ++ + + +G+ +E + VE ++ P ++A+T DT
Sbjct: 153 RPGRFDRPRAEELGVPVGPKFGRLHEGETVEAEDGTVVEPEQVVGPPRPGRKLAYTADT- 211
Query: 257 SEFMLNPRNA---DALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-------RQAV 306
PR A A A +LI +ATF DD H + I R A+
Sbjct: 212 -----RPREATVDAAADADLLIHDATFADDMADRARDTAHSTGREAGSIADRANAKRLAL 266
Query: 307 LKLQSKVSAKVVPLTEGFKSVY 328
+ + S+ +A P+ + +
Sbjct: 267 VHISSRYAADPRPIRRDAREAF 288
>gi|456011721|gb|EMF45458.1| DNA polymerase IV [Planococcus halocryophilus Or1]
Length = 752
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 98/238 (41%), Gaps = 47/238 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRS-----LGNV 172
+FITH H DHI GLP + SR + P I+ P IKE V+ + R+ +
Sbjct: 492 IFITHMHGDHIFGLPGLLGSRSFQAGEEPLDIYGPVGIKEYVQMTLTLSRTHLTYPIAYH 551
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--------YLLRKKLKKQ--- 221
EL+ ++ D T E R HVIPS G+ I L+ K L
Sbjct: 552 ELSEGMIFEDELMTVETR--------LLDHVIPSYGFRITQKPLPPKLLINKALSLGVPK 603
Query: 222 ---YIHLK-GKQIEKLKKSGVEITDIILSPEVAFT----GDT--TSEFMLNPRNADALRA 271
LK G+ IE V D+ S + F GDT + R AD
Sbjct: 604 GPLLAKLKTGQDIELANGQWVRSGDVTESEQPGFVVTILGDTRFCKAAVELGRGAD---- 659
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLK-----LQSKVSAKVVPLTEGF 324
+L+ EATF D + + A ++GH + + A L + + +SA+ +P E F
Sbjct: 660 -VLVHEATF--DATAKKMATEYGHATVYDAAETARLARANTLIMNHISARFLPEDEKF 714
>gi|375147746|ref|YP_005010187.1| RNAse Z [Niastella koreensis GR20-10]
gi|361061792|gb|AEW00784.1| RNAse Z [Niastella koreensis GR20-10]
Length = 293
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 98/244 (40%), Gaps = 42/244 (17%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRC-------PTRAIQQNFVFITHGHLDHIGGLP 133
Y I G S T I EL+ FD G +R I+ VFI+H DH+ GL
Sbjct: 3 YNITGYSTALFSTWYFIDELRLLFDAGDGLMANLLQKSRKIEH--VFISHADRDHVTGLL 60
Query: 134 MYVASRGLYNLKP--PTIFVP------PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGE 185
+ N +P P I+ P P++ D F+ H + G V +
Sbjct: 61 QF----NQLNSRPGFPVIYYPKDSGSFPALS-DFSVKFDPHVT-GTV-----WTPISPEN 109
Query: 186 TYEMRNDIVVRPFKTHHV-----IPSQGYVIYLLRKKLKKQYIHLKGKQIEKL--KKSGV 238
+R D+ VR H I S + + + KL + + L I+++ +K
Sbjct: 110 DVPIRKDMFVRSIPNTHAAQKGGIRSLSFKVIQTKMKLNPELVKLPAADIKRIIEQKGKA 169
Query: 239 EITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFL--DDEMSIEHAQQHGHT 296
+ + ++++GDT E + N ++ILI EATFL DDE H+
Sbjct: 170 RTHTEVQTNLISYSGDTPVEDLGRWEN-----SQILIHEATFLRDDDEEKELGGHSAKHS 224
Query: 297 HLSE 300
+L E
Sbjct: 225 YLEE 228
>gi|295398003|ref|ZP_06808059.1| ribonuclease Z [Aerococcus viridans ATCC 11563]
gi|294973761|gb|EFG49532.1| ribonuclease Z [Aerococcus viridans ATCC 11563]
Length = 306
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 102/231 (44%), Gaps = 44/231 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR + P TI+ P IK ++ ++ R+ L D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSHQGGESPVTIYGPKGIKAYIDNFLQVTRT----TLGYD 114
Query: 178 LVALDVG-ETYEMRNDIVVRPFKT-HHVIPSQGYVIY-------LLRKKLKKQYI----- 223
L+ ++ E +ND +KT H + S G+ + LL K ++ +
Sbjct: 115 LIIQELADEGMVFQNDQYQVLYKTLDHAVQSYGFRVIEADQVGELLIDKAREAGVPNGPL 174
Query: 224 --HLK-GKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALR--AKI 273
LK GK I + ++ D I P+ V GDT +NA AL A
Sbjct: 175 LGQLKQGKTITLEDGTQLDGRDFI-GPDKKGHIVTILGDTRYN-----KNAVALAKDADF 228
Query: 274 LITEATFLDDEMSIEH------AQQHGHTHLSEDIRQAVLKLQSKVSAKVV 318
L+ EATF E + A+Q G +++Q +L + +SA+ V
Sbjct: 229 LVHEATFAAGEERMARNYYHSTAKQAGQVAKEANVKQLLL---THISARYV 276
>gi|298368726|ref|ZP_06980044.1| ribonuclease Z [Neisseria sp. oral taxon 014 str. F0314]
gi|298282729|gb|EFI24216.1| ribonuclease Z [Neisseria sp. oral taxon 014 str. F0314]
Length = 307
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 22/127 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLK--PPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FITH H DHI GLP ++SR P +++ P I+ VE E+ ++ + +N
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFLGGADGPLSLYGPAGIRRFVESALEVSQTQLSYPINF 118
Query: 177 -----DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE 231
D + LD GE V F H +PS Y I ++ G QI+
Sbjct: 119 HEFVSDGLILDDGE-------FTVSAFGLAHSLPSFAYRI--------EEKERAGGLQID 163
Query: 232 KLKKSGV 238
+L++ G+
Sbjct: 164 RLRELGI 170
>gi|448302492|ref|ZP_21492471.1| ribonuclease Z [Natronorubrum tibetense GA33]
gi|445581158|gb|ELY35520.1| ribonuclease Z [Natronorubrum tibetense GA33]
Length = 311
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 40/227 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSI 155
FD+G R + + + +F+TH H DHI GLP + + KP I P
Sbjct: 33 FDVGEGTQRQMMRFSTGFDISTIFLTHLHGDHILGLPGLLQTLDFNERTKPLEICTPAGT 92
Query: 156 KEDVEKLFEIHRSLGNVELNL-DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
DV++ + + + + +L + DVG + ++ ++ F+T H S GY +
Sbjct: 93 GTDVDQFLTASGTDPDYPVRIRELTSGDVGLEH---DEYTIQAFETEHRTRSLGYALVEA 149
Query: 215 RKK---LKKQYIHL---KGKQIEKL-KKSGVEITD-IILSPE-----------VAFTGDT 255
+K +++ + L +G +L + + VE+TD ++ P+ V +TGDT
Sbjct: 150 ERKGRFDRERALELGVPEGPMFGRLHEGNSVELTDGTVIHPDQVVGDPRPGRRVVYTGDT 209
Query: 256 --TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
T + +AD +LI +A F D ++ A+Q GH+ E
Sbjct: 210 RPTDRTISIASDAD-----LLIHDAMFAQDR--VDRARQTGHSTAEE 249
>gi|386077497|ref|YP_005991022.1| ribonuclease Z Rnz [Pantoea ananatis PA13]
gi|354986678|gb|AER30802.1| ribonuclease Z Rnz [Pantoea ananatis PA13]
Length = 303
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L P T++ P +K V+ + S + L+
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTTPMTVYGPKGLKAFVDSALSLSSSY--TDYPLE 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
++ + GE + + V + +H I GY I +L +LK + + +G
Sbjct: 116 VIEIAAGEVLD-DGEFRVTAWPMNHTIDCFGYRIEQRDKPGFLDAARLKAEGVP-RGPWY 173
Query: 231 EKLKKS 236
++LK+
Sbjct: 174 QQLKQG 179
>gi|339448222|ref|ZP_08651778.1| ribonuclease Z [Lactobacillus fructivorans KCTC 3543]
Length = 315
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 83/198 (41%), Gaps = 27/198 (13%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI GLP ++SR P TI+ P IK V+ ++ ++ +
Sbjct: 57 NKIFITHLHGDHIYGLPGLLSSRSFQGGDDPVTIYGPHGIKNYVQTSLQVTQT--KLGYR 114
Query: 176 LDLVALDV-GETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ------ 221
+ V L G+ +E R V K H + S G+ I LL KL++
Sbjct: 115 IKYVELGQPGKIFEGRK-FTVYAEKLDHQVQSWGFRIVEHDHPGELLVNKLRENNIPAGP 173
Query: 222 -YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILI 275
Y LK GK I+ + D I + + GDT +N D A +L+
Sbjct: 174 LYGQLKQGKTIQLNDGRIINGNDYIGKAQKGRIITILGDTRKVDTINELAQD---ADVLV 230
Query: 276 TEATFLDDEMSIEHAQQH 293
E+TF E + H H
Sbjct: 231 HESTFGKGEAKLAHNYYH 248
>gi|123506046|ref|XP_001329114.1| Sulphohydrolase/Glycosulfatase, Zn-dependent hydrolase [Trichomonas
vaginalis G3]
gi|121912065|gb|EAY16891.1| Sulphohydrolase/Glycosulfatase, Zn-dependent hydrolase, putative
[Trichomonas vaginalis G3]
Length = 245
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 30/169 (17%)
Query: 91 HETCVIIPELKCAFDIGRCPTRAIQQN-----FVFITHGHLDHIGGLPMYVASRGLYNLK 145
H +IPEL FD G RA Q +F++H HLDH GL + LYN K
Sbjct: 18 HTPSYMIPELGIIFDSGNGIHRAPQYVETETIHIFLSHAHLDHTEGLRV---VNYLYNDK 74
Query: 146 PPTIFVPP--SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHV 203
I V I E + LF + G+ + +L ++ G+ +++N + + F+ +H
Sbjct: 75 CTKIIVHARKEIIEAIPLLFNQPFAGGHT-MPFELEEVEAGKPIQLQNGVTITAFELNHT 133
Query: 204 IPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFT 252
P+ GY +++ K+S +TD PE +T
Sbjct: 134 SPNFGY-------------------RLDTPKRSMAYVTDTTFIPEKDYT 163
>gi|448727066|ref|ZP_21709443.1| ribonuclease Z [Halococcus morrhuae DSM 1307]
gi|445792266|gb|EMA42877.1| ribonuclease Z [Halococcus morrhuae DSM 1307]
Length = 305
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 43/247 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF++H H DH+ GLP + + + I PP
Sbjct: 33 FDCGEGTQRQMMRFGTGFSVSHVFLSHLHGDHVLGLPGLCQTLDFNDREEALAIHTPPGT 92
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR 215
K VE L + + + + V G ++ VR F+T H S GY L+
Sbjct: 93 KSAVENLVGVTGARPGYPIRVHEV--QPGGVALREDEYEVRAFETDHRTRSVGYA--LVE 148
Query: 216 KKLKKQYIHLKGKQI--------EKLKKSG-VEITD-IILSPE-----------VAFTGD 254
K ++ + +++ KL + VE+ D ++ PE + +TGD
Sbjct: 149 DDRKGRFDRERAEELGVPAGPLFSKLHEGNPVELDDGTVVDPEQVVGEPRPGRRIVYTGD 208
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS 314
T +D A +LI EA+F +D E A + GH+ RQA +L ++
Sbjct: 209 TRPTAATTEAASD---ADLLIHEASFGEDRS--ERAGKTGHST----ARQAA-ELATRAD 258
Query: 315 AKVVPLT 321
AK + LT
Sbjct: 259 AKRLALT 265
>gi|219669537|ref|YP_002459972.1| beta-lactamase [Desulfitobacterium hafniense DCB-2]
gi|219539797|gb|ACL21536.1| beta-lactamase domain protein [Desulfitobacterium hafniense DCB-2]
Length = 552
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 79/186 (42%), Gaps = 27/186 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGGLP L L+ P ++ KL R G NL L
Sbjct: 64 IFITHGHEDHIGGLPFL-----LPKLEAPVYGTKLTMGLVRAKL----RERGGYPENL-L 113
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPSQ---------GYVIYLLRKKLKKQYIHLKGKQ 229
+D GE + + D V F+ H IP G VIY K Y + G++
Sbjct: 114 RVIDPGEPVKAK-DFQVEAFRVTHSIPDAVGYGILTPLGRVIY--TGDFKVDYTPIDGQE 170
Query: 230 IE--KLKKSGVEITDIIL--SPEVAFTGDTTSEFMLNPRNADAL-RAKILITEATFLDDE 284
++ +L G E +L S +G T SE ++ DA RA+ I ATF +
Sbjct: 171 MDLGRLAAWGQEGVLALLCDSTNAERSGSTISEKVVGKTLMDAFSRAEGKIIMATFASNV 230
Query: 285 MSIEHA 290
I+ A
Sbjct: 231 HRIQQA 236
>gi|440759280|ref|ZP_20938426.1| Ribonuclease Z [Pantoea agglomerans 299R]
gi|436426983|gb|ELP24674.1| Ribonuclease Z [Pantoea agglomerans 299R]
Length = 303
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L P T++ P +K VE I S + L
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTSPMTVYGPKGLKTFVETALSISGSY--TDYPLS 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
LV ++ G T + + + + H + GY I
Sbjct: 116 LVEIEAGWTLD-DGEFRISAWPLSHPVACFGYRI 148
>gi|299537849|ref|ZP_07051138.1| ribonuclease Z [Lysinibacillus fusiformis ZC1]
gi|298726828|gb|EFI67414.1| ribonuclease Z [Lysinibacillus fusiformis ZC1]
Length = 310
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 26/197 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR P TIF P +++ +E+ + ++ ++ L
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIFGPSGLQQWIEQTLALSKT--HLTYPLR 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL-------KKQYIHL-KGKQ 229
V + G +E + + + HV+P GY I +K L K Q + + KG
Sbjct: 117 FVEVQEGIIFEDAH-FTIYAKELRHVVPCYGYRIE--QKDLPGELLIDKAQALGVPKGPL 173
Query: 230 IEKLKKSG---VEITDIILSPEV---AFTGDTTSEFMLNPRNADALR----AKILITEAT 279
+ +LK +E D++ + +V A G T S +A++ A I++ EAT
Sbjct: 174 LGQLKDGHDIVLENGDVVHAKDVVAPAKKGFTLSVLGDTKYCEEAIQLSMGADIIVHEAT 233
Query: 280 FLDDEMSIEHAQQHGHT 296
F D + + A +GH
Sbjct: 234 F--DGTTTDLAASYGHA 248
>gi|262046039|ref|ZP_06019003.1| ribonuclease Z [Lactobacillus crispatus MV-3A-US]
gi|295692862|ref|YP_003601472.1| ribonuclease z [Lactobacillus crispatus ST1]
gi|260573998|gb|EEX30554.1| ribonuclease Z [Lactobacillus crispatus MV-3A-US]
gi|295030968|emb|CBL50447.1| Ribonuclease Z [Lactobacillus crispatus ST1]
Length = 312
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 25/195 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++R ++ P TI+ P I+E V ++ R+ +++
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPITIYGPSGIEEFVRTALKVSRT----KISYP 114
Query: 178 LVALDVGETYEMRNDIVVRPF--KTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGK 228
+ +++ ++ + D R + + H IPS G+ + LL KL QY G
Sbjct: 115 IRFVELAKSGLICEDKGFRVYTEQLDHRIPSFGFRVVEASHPGELLIDKL-AQYNVPNGP 173
Query: 229 QIEKLKKS-GVEITDIILSPEVAFTGDTTS----EFMLNPRNADALR-----AKILITEA 278
+ KLK V + D + F G T S + + R+ ++ A +L+ E+
Sbjct: 174 LLGKLKNGEKVTLADGTVLDGKNFLGPTKSGRIVTVIYDTRSTPSIARLAKDADVLVHES 233
Query: 279 TFLDDEMSIEHAQQH 293
TF DE + H H
Sbjct: 234 TFAGDEQKLAHDYYH 248
>gi|395243539|ref|ZP_10420524.1| Ribonuclease Z [Lactobacillus hominis CRBIP 24.179]
gi|394484159|emb|CCI81532.1| Ribonuclease Z [Lactobacillus hominis CRBIP 24.179]
Length = 313
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP ++SR + P TI+ PP
Sbjct: 36 FDVGEATQHQILRTNIRPRKITRIFISHNHGDHIFGLPGLLSSRSFQGDGGPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
I++ V+ ++ R+ V + V L D G +E + V K H +PS G+ +
Sbjct: 96 IEQFVQTSLKVSRT--KVSYPIKYVNLTDDGLIFE-NSSFAVFTAKLDHRVPSYGFRV 150
>gi|385781789|ref|YP_005757960.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 11819-97]
gi|418574528|ref|ZP_13138697.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21333]
gi|364522778|gb|AEW65528.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 11819-97]
gi|371979255|gb|EHO96490.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21333]
Length = 306
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 93/224 (41%), Gaps = 42/224 (18%)
Query: 104 FDIGRCPTRAIQQN--------FVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK V E+ +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYV----EMSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
T ++E +++ RNAD +++ EAT++D E + + H H
Sbjct: 212 TKPCSNEHVIS-RNAD-----LMVHEATYIDGEKHLANNYHHSH 249
>gi|304397924|ref|ZP_07379800.1| ribonuclease Z [Pantoea sp. aB]
gi|304354635|gb|EFM19006.1| ribonuclease Z [Pantoea sp. aB]
Length = 303
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L P T++ P +K VE I S + L
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTSPMTVYGPKGLKTFVETALSISGSY--TDYPLS 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
LV ++ G T + + + + H + GY I
Sbjct: 116 LVEIEAGWTLD-DGEFRISAWPLSHPVACFGYRI 148
>gi|291619324|ref|YP_003522066.1| Rnz [Pantoea ananatis LMG 20103]
gi|378765240|ref|YP_005193699.1| ribonuclease Z [Pantoea ananatis LMG 5342]
gi|386017570|ref|YP_005935868.1| ribonuclease Z Rnz [Pantoea ananatis AJ13355]
gi|291154354|gb|ADD78938.1| Rnz [Pantoea ananatis LMG 20103]
gi|327395650|dbj|BAK13072.1| ribonuclease Z Rnz [Pantoea ananatis AJ13355]
gi|365184712|emb|CCF07662.1| ribonuclease Z [Pantoea ananatis LMG 5342]
Length = 338
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L P T++ P +K V+ + S + L+
Sbjct: 93 IFITHLHGDHIFGLPGLLTSRSMAGLTTPMTVYGPKGLKAFVDSALSLSSSY--TDYPLE 150
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
++ + GE + + V + +H I GY I +L +LK + + +G
Sbjct: 151 VIEIAAGEVLD-DGEFRVTAWPMNHTIDCFGYRIEQRDKPGFLDAARLKAEGVP-RGPWY 208
Query: 231 EKLKKS 236
++LK+
Sbjct: 209 QQLKQG 214
>gi|410084875|ref|ZP_11281596.1| Ribonuclease Z [Morganella morganii SC01]
gi|409768520|gb|EKN52580.1| Ribonuclease Z [Morganella morganii SC01]
Length = 305
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 38/224 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P T+F P + + VE + S + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGCEDPLTLFGPQGLAQFVETALTLSGSY--LTFPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
++ +D + V + H + S GY I L ++LK + + G +
Sbjct: 117 IIEIDEEGVIYDDGQLKVSAYSLEHPVISYGYRIEEHDKPGALDAQRLKAEGVP-GGPWM 175
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTT-SEFMLN-PRNADALRAKIL 274
+ LK+ G E+T D + P+ + GDT E L +NAD ++
Sbjct: 176 QTLKQGG-EVTLDDGRVICGADYLGEPQRGRHLVIFGDTAPCENALKLAQNAD-----VI 229
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVV 318
+ EAT LD M+ E A GH S ++ A L + V +
Sbjct: 230 VLEAT-LDGTMT-EKANSRGH---SSTVQTATLARDAGVGTLIA 268
>gi|407979759|ref|ZP_11160567.1| ribonuclease Z [Bacillus sp. HYC-10]
gi|407413584|gb|EKF35281.1| ribonuclease Z [Bacillus sp. HYC-10]
Length = 309
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 30/208 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK V ++ ++ L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTIYGPRGIKAFVNAALSATQT--HLTYPLH 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK-------QYI 223
++ +D G +E + V + H +P+ GY + L + LKK Y
Sbjct: 117 IIEIDEGIVFE-DDTFQVEAKRVSHGVPAYGYRVVEKDVPGALKAEDLKKIGVKPGPLYQ 175
Query: 224 HLKGKQIEKLKKS-GVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
LK + L+ ++ TD + P+ VAF+GDT +NAD +L+
Sbjct: 176 KLKNGETVTLEDGRRIDGTDYLEPPKKGRIVAFSGDTRLCENITRLAKNAD-----VLVH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEDIRQ 304
EATF ++ + + H T + Q
Sbjct: 231 EATFSKEDAELAYHYYHSTTEQAAKTAQ 258
>gi|398799521|ref|ZP_10558810.1| ribonuclease Z [Pantoea sp. GM01]
gi|398098491|gb|EJL88777.1| ribonuclease Z [Pantoea sp. GM01]
Length = 303
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRS-----LGNV 172
+FITH H DHI GLP + SR + + +P TI+ P I++ +E + S L V
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGIPEPMTIYGPAGIRQFIETALSLSGSYTSYPLEIV 117
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
E+ LV LD GE V + +HVI GY I
Sbjct: 118 EIEAGLV-LDDGE-------FRVTAWPMNHVIECFGYRI 148
>gi|429963288|gb|ELA42832.1| hypothetical protein VICG_00147 [Vittaforma corneae ATCC 50505]
Length = 513
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 43/176 (24%)
Query: 117 NFVFITHGHLDHIGGLPMY---VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
+ + I+H HLDH G LP + + +G + PT V P + ED +K+ + N+
Sbjct: 59 DCILISHFHLDHCGALPYFTEVLGYKGPIYMTYPTKAVLPILLEDCQKILSMKSHDSNIY 118
Query: 174 LNLD-------LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK 226
D +V +++ ET E+ + + HVI + + + +
Sbjct: 119 SFEDIKKCMEKIVPINMNETVEVSKGFTITAYYAGHVIGAAMFYVKV------------- 165
Query: 227 GKQIEKLKKSGVEITDIILSPEVAFTGD--TTSEFMLNPRNADALRAKILITEATF 280
G Q V +TGD TT++ L D LR ++ITE+T+
Sbjct: 166 GDQ------------------SVVYTGDYSTTADQHLGTAWIDTLRPDLMITESTY 203
>gi|292490002|ref|YP_003532894.1| ribonuclease Z [Erwinia amylovora CFBP1430]
gi|292901024|ref|YP_003540393.1| ribonuclease Z [Erwinia amylovora ATCC 49946]
gi|428786988|ref|ZP_19004464.1| ribonuclease Z [Erwinia amylovora ACW56400]
gi|291200872|emb|CBJ48007.1| ribonuclease Z [Erwinia amylovora ATCC 49946]
gi|291555441|emb|CBA23898.1| ribonuclease Z [Erwinia amylovora CFBP1430]
gi|312174192|emb|CBX82445.1| ribonuclease Z [Erwinia amylovora ATCC BAA-2158]
gi|426274455|gb|EKV52197.1| ribonuclease Z [Erwinia amylovora ACW56400]
Length = 304
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + ++P T++ PP IK VE + S + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLTSRSMNGCVEPMTLYGPPGIKTFVETSLSLSGSW--LTFPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
++ + GE ++ V + H + GY I
Sbjct: 117 IIEIGAGEVFQ-DAQFRVTAYPLTHPVECYGYRI 149
>gi|449131654|ref|ZP_21767862.1| ribonuclease Z [Treponema denticola SP37]
gi|448938513|gb|EMB19443.1| ribonuclease Z [Treponema denticola SP37]
Length = 308
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPS 154
FD G R R + N +FI+H H DHI GLP + + S + +P I PP
Sbjct: 35 FDCGEGTQVALRRLNLRWKRINAIFISHTHADHITGLPGLLMLSSQVDREEPLYIIGPPK 94
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGE--TYEMRNDIVVRPFKTHHVIPSQGYVI 211
+ E V E R + ++ +N D++ ++ E + VR F H P GY
Sbjct: 95 VAEYV----ETSRKVLDMYINYDIIVKEIKEPGVVYSTEEFQVRSFWLDHTKPCMGYTF 149
>gi|424735601|ref|ZP_18164064.1| ribonuclease Z [Lysinibacillus fusiformis ZB2]
gi|422950258|gb|EKU44627.1| ribonuclease Z [Lysinibacillus fusiformis ZB2]
Length = 311
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 26/197 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR P TIF P +++ +E+ + ++ ++ L
Sbjct: 60 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIFGPSGLQQWIEQTLALSKT--HLTYPLR 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL-------KKQYIHL-KGKQ 229
V + G +E + + + HV+P GY I +K L K Q + + KG
Sbjct: 118 FVEVQEGIIFEDAH-FTIYAKELRHVVPCYGYRIE--QKDLPGELLIDKAQALGVPKGPL 174
Query: 230 IEKLKKSG---VEITDIILSPEV---AFTGDTTSEFMLNPRNADALR----AKILITEAT 279
+ +LK +E D++ + +V A G T S +A++ A I++ EAT
Sbjct: 175 LGQLKDGHDIVLENGDVVHAKDVVAPAKKGFTLSVLGDTKYCEEAIQLSMGADIIVHEAT 234
Query: 280 FLDDEMSIEHAQQHGHT 296
F D + + A +GH
Sbjct: 235 F--DGTTTDLAASYGHA 249
>gi|417545642|ref|ZP_12196728.1| putative ribonuclease Z [Acinetobacter baumannii OIFC032]
gi|421668421|ref|ZP_16108460.1| putative ribonuclease Z [Acinetobacter baumannii OIFC087]
gi|421671576|ref|ZP_16111546.1| putative ribonuclease Z [Acinetobacter baumannii OIFC099]
gi|400383530|gb|EJP42208.1| putative ribonuclease Z [Acinetobacter baumannii OIFC032]
gi|410380313|gb|EKP32901.1| putative ribonuclease Z [Acinetobacter baumannii OIFC087]
gi|410381538|gb|EKP34103.1| putative ribonuclease Z [Acinetobacter baumannii OIFC099]
Length = 318
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 29/185 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L +
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARTKPLIVIAP---KEIQQWFEITAQLTDLYLPYSI 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL----KGKQ 229
+DV E ++ +++ ++ H +PS + IY+ +KK+ Q + KG
Sbjct: 116 KFIDVNEATQPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGVPKGDI 175
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILIT 276
LK+ VE IL + GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDAQLLIH 231
Query: 277 EATFL 281
EAT+L
Sbjct: 232 EATYL 236
>gi|56420868|ref|YP_148186.1| ribonuclease Z [Geobacillus kaustophilus HTA426]
gi|375009401|ref|YP_004983034.1| ribonuclease Z [Geobacillus thermoleovorans CCB_US3_UF5]
gi|76363377|sp|Q5KXG8.1|RNZ_GEOKA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|56380710|dbj|BAD76618.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|359288250|gb|AEV19934.1| Ribonuclease Z [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 307
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 32/201 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + + P T+F P I+ VE + + ELN
Sbjct: 59 IFITHLHGDHLFGLPGLLGSRSFQSGETPLTVFGPKGIRSFVETALAVSGTKLRYELN-- 116
Query: 178 LVALDVGETY-EMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V +D G + + R ++ + + H +PS G+ + LL ++L+ Y
Sbjct: 117 IVEIDEGVIFDDERFSVIAK--RLDHGMPSYGFRVVEKDLPGPLLVERLQALGVRPGPIY 174
Query: 223 IHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTT-SEFMLN-PRNADALRAKILI 275
+K GK + + ++ + + P+ VA GDT E + R+AD +++
Sbjct: 175 QEIKQGKTVVLDDGTVIDGREFVGPPQKGRIVAVLGDTRFCEAAIELARDAD-----VVV 229
Query: 276 TEATFLDDEMSIEHAQQHGHT 296
EATF E + H H T
Sbjct: 230 HEATFAAAEQRLAHDYFHSTT 250
>gi|421786914|ref|ZP_16223297.1| putative ribonuclease Z [Acinetobacter baumannii Naval-82]
gi|410410524|gb|EKP62428.1| putative ribonuclease Z [Acinetobacter baumannii Naval-82]
Length = 318
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 29/185 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L +
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARTKPLIVIAP---KEIQQWFEITAQLTDLHLPYSI 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL----KGKQ 229
+DV E ++ +++ ++ H +PS + IY+ +KK+ Q + KG
Sbjct: 116 KFIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGVPKGDI 175
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILIT 276
LK+ VE +L + GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYDVEFEGRVLKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDAQLLIH 231
Query: 277 EATFL 281
EAT+L
Sbjct: 232 EATYL 236
>gi|297623458|ref|YP_003704892.1| beta-lactamase domain-containing protein [Truepera radiovictrix DSM
17093]
gi|297164638|gb|ADI14349.1| beta-lactamase domain protein [Truepera radiovictrix DSM 17093]
Length = 247
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 24/161 (14%)
Query: 87 SIGGHETCVII--PELKCAFDIGRCPTRAIQQN--------FVFITHGHLDHIGGLPMYV 136
S G TC ++ P D G A+++ +FITH H DH+GGLP +
Sbjct: 15 SGGRFNTCFLVEAPSAHFLIDFGASSLAALKRAGRSVRDLPLIFITHLHGDHVGGLPFLL 74
Query: 137 ASRGLYNLK--PPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDV-----GETYEM 189
L + + P TI PP +K + KL E ++L +L L++ GE
Sbjct: 75 LEASLVDKRTAPLTIAGPPGLKAHLPKLIEALFPGTELQLPFELSVLELPPDVRGEV--- 131
Query: 190 RNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQI 230
+ V P++ H P V LR +L + + G +
Sbjct: 132 -GGVTVTPYQVEHAKP---LVCTGLRFELGGKVLAYSGDTV 168
>gi|306490831|gb|ADM94951.1| metal-dependent hydrolase [uncultured candidate division JS1
bacterium]
Length = 315
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 38/224 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +A+RGL +K IF P ++ ++ F+ S ++
Sbjct: 59 IFISHLHGDHIFGLPGLLATRGLLGIKKSINIFGPIGLENYLKNNFD--YSCTHIPYFYH 116
Query: 178 LVALDVGETYEMRN------DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK----- 226
+ A++ E Y N +I V +H + S GY I + K +K+ + K
Sbjct: 117 IYAIE-KENYLSSNLLWKNENISVYCALLNHYLDSFGYAI--IEKNIKRNILVEKLVKLG 173
Query: 227 ---GKQIEKLKKSGV-------------EITDIILSPEVAFTGDTTSEFMLNPRNADALR 270
G +K K++G+ I + I ++ + GDTT N A
Sbjct: 174 VPPGPIYKKFKENGIINLNDGMVLKADDFIKESISIKKLCYCGDTT---FSNNAVILAQE 230
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS 314
A +LI E TF + A+Q H+ + E I+ A L K++
Sbjct: 231 ADLLIHEGTFCSKRK--QEAKQSYHSTIEEAIKVARLARVKKLA 272
>gi|224108267|ref|XP_002314781.1| predicted protein [Populus trichocarpa]
gi|222863821|gb|EEF00952.1| predicted protein [Populus trichocarpa]
Length = 639
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYN----LKPPTIFVPPSIKEDVEKLFEIHR----- 167
+ V ITH HLDH+G LP + G YN + PT + P + ED K+ R
Sbjct: 61 DCVIITHFHLDHVGALPYFTEVCG-YNGPIYMTYPTKALAPLMLEDFRKVLVDRRGEEEQ 119
Query: 168 --SLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVI 204
SL + ++A+D+ +T ++ +D+ +R + HV+
Sbjct: 120 FTSLHISQCMEKVIAVDLKQTVQVDDDLQIRAYYAGHVL 158
>gi|422010256|ref|ZP_16357237.1| binuclear zinc phosphodiesterase [Providencia rettgeri Dmel1]
gi|414091559|gb|EKT53242.1| binuclear zinc phosphodiesterase [Providencia rettgeri Dmel1]
Length = 304
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTI-FVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P I + P +K+ +E + + S+ + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGATDPLIVYGPKGLKQYIETVLTV--SVSYMTYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V ++ G+ ++ +++V + H + GY I
Sbjct: 117 IVEIEAGQLFD-DGELIVTAYALDHRVECYGYRI 149
>gi|448680389|ref|ZP_21690706.1| ribonuclease Z [Haloarcula argentinensis DSM 12282]
gi|445768833|gb|EMA19910.1| ribonuclease Z [Haloarcula argentinensis DSM 12282]
Length = 311
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 97/232 (41%), Gaps = 37/232 (15%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + +P + P
Sbjct: 35 FDCGEGTQRQMMRFGTGFAIDHLFVTHLHGDHVLGIPGLLQTWDFNERERPIAVHTPAGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ ++++L + + + + + ++ V+ G+ R++ VR +T H S GYV+
Sbjct: 95 RGNIKQLIQANGTTPSFPVRINEVS--AGDVVLDRSEYEVRAIETTHRCASVGYVLDEDD 152
Query: 212 ---YLLRKKLKKQYIHLKGKQIEKLKKS-GVEITDIILSPEV-----------AFTGDT- 255
R+K + ++ G + KL + VE + PE +TGDT
Sbjct: 153 RKGKFDREKAEAEFGIPPGPKYSKLHRGEAVEHEGETIQPEAVVGPARPGRRFVYTGDTL 212
Query: 256 -TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-RQA 305
T + AD +L+ +ATF +D A H + D+ RQA
Sbjct: 213 PTESVIEASEGAD-----LLVHDATFAEDRKERAKATAHSTAREAADVARQA 259
>gi|448238624|ref|YP_007402682.1| ribonuclease Z [Geobacillus sp. GHH01]
gi|445207466|gb|AGE22931.1| ribonuclease Z [Geobacillus sp. GHH01]
Length = 307
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 32/201 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + + P T+F P I+ VE + + ELN
Sbjct: 59 IFITHLHGDHLFGLPGLLGSRSFQSGETPLTVFGPKGIRAFVETALAVSGTKLRYELN-- 116
Query: 178 LVALDVGETY-EMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V +D G + + R ++ + + H +PS G+ + LL ++L+ Y
Sbjct: 117 IVEIDEGVIFDDERFSVIAK--RLDHGMPSYGFRVVEKDLPGPLLVERLQALGVRPGPIY 174
Query: 223 IHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTT-SEFMLN-PRNADALRAKILI 275
+K GK + + ++ + + P+ VA GDT E + R+AD +++
Sbjct: 175 QEIKQGKTVVLDDGTVIDGREFVGPPQKGRIVAVLGDTRFCEAAIELARDAD-----VVV 229
Query: 276 TEATFLDDEMSIEHAQQHGHT 296
EATF E + H H T
Sbjct: 230 HEATFAAAEQRLAHDYFHSTT 250
>gi|387813479|ref|YP_005428961.1| binuclear zinc phosphodiesterase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381338491|emb|CCG94538.1| binuclear zinc phosphodiesterase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 323
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 19/162 (11%)
Query: 87 SIGGHETCVIIPELKCAFDIG--------RCPTRAIQQNFVFITHGHLDHIGGLP-MYVA 137
++ G C+ P+ D G R +Q +FITH H DHI GLP + +
Sbjct: 18 NVTGLALCLSGPKPWYLVDCGEGTQHQLMRTRYSVMQLRAIFITHIHGDHIFGLPGLLTS 77
Query: 138 SRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRP 197
+ L +P I PP ++ ++ + E S ++ L+ + + + Y + + V
Sbjct: 78 ASMLGRTEPLDIIAPPQVRRFIDAVIE--NSDSSLSYPLNFINSEAPDFYWQDDHLGVTN 135
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVE 239
H +P + YV + L++Q Q EKL G+E
Sbjct: 136 VALSHRVPCRAYV--FTERNLERQL------QKEKLVADGIE 169
>gi|386041378|ref|YP_005960332.1| ribonuclease Z [Paenibacillus polymyxa M1]
gi|343097416|emb|CCC85625.1| ribonuclease Z [Paenibacillus polymyxa M1]
Length = 310
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 28/210 (13%)
Query: 105 DIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLF 163
++ R P + + +FITH H DH+ GLP ++SR P T++ PP +++ +E
Sbjct: 45 EVLRSPLKLSRLEKIFITHLHGDHLFGLPGLLSSRAYQGGTAPLTVYGPPGLQQYIELSL 104
Query: 164 EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKK 217
I +S N +L+ + G V H I S GY I L ++
Sbjct: 105 GISQSRINYQLH---IVEHTGGVLFDDGQFRVESALLDHRIDSYGYRIVEMDKPGKLNQE 161
Query: 218 LKKQYIHLKGKQIEKLKKS-GVEI--------TDIILSPE----VAFTGDTTSEFMLNPR 264
L ++Y G KLK+ VE+ D++ SP+ V GDT P
Sbjct: 162 LLERYGIKPGPVYGKLKRGESVEVEGGVILHPQDVLGSPKKGRIVTILGDTRP----CPN 217
Query: 265 NADALR-AKILITEATFLDDEMSIEHAQQH 293
R A +++ EATFL D + H
Sbjct: 218 TVVLARDATVVVHEATFLHDLADTAYEYHH 247
>gi|401764540|ref|YP_006579547.1| ribonuclease Z [Enterobacter cloacae subsp. cloacae ENHKU01]
gi|400176074|gb|AFP70923.1| ribonuclease Z [Enterobacter cloacae subsp. cloacae ENHKU01]
Length = 305
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + N P TI+ P I+E VE + S + L+
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNANPLTIYGPVGIREFVETALRLSGSW--TDYPLE 117
Query: 178 LVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVI 211
+V + G ++ N + RP +H + GY I
Sbjct: 118 VVEITEGLVFDDGNYQVTARPL--NHPVECYGYRI 150
>gi|377831397|ref|ZP_09814374.1| ribonuclease Z [Lactobacillus mucosae LM1]
gi|377554824|gb|EHT16526.1| ribonuclease Z [Lactobacillus mucosae LM1]
Length = 308
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 82/193 (42%), Gaps = 21/193 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP ++SR P TI+ P IKE V+ ++ S + L
Sbjct: 59 IFISHLHGDHIFGLPGLLSSRSFQGGNEPLTIYGPVGIKEFVKTALKVSES--RLSYPLK 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
V L D GE + + V K +H I GY + L +KL+ Y
Sbjct: 117 FVELRDDGEIFSDKT-FTVYTKKLNHKIACFGYRVVEHDHPGELQVEKLRAAQVPSGPIY 175
Query: 223 IHLK-GKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNAD-ALRAKILITEATF 280
LK GK +E ++ D I +P+ S+ P + A A +LI E TF
Sbjct: 176 GQLKAGKVVELPDGRVLDGHDFIGAPQKGRVITIISDTRHTPAAIELAKDADVLIHEGTF 235
Query: 281 LDDEMSIEHAQQH 293
DE + + H
Sbjct: 236 AKDETKMARSYYH 248
>gi|421492448|ref|ZP_15939808.1| ELAC [Morganella morganii subsp. morganii KT]
gi|455738357|ref|YP_007504623.1| Ribonuclease Z [Morganella morganii subsp. morganii KT]
gi|400193055|gb|EJO26191.1| ELAC [Morganella morganii subsp. morganii KT]
gi|455419920|gb|AGG30250.1| Ribonuclease Z [Morganella morganii subsp. morganii KT]
Length = 305
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 38/224 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P T+F P + + VE + S + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGCEEPLTLFGPQGLAQFVETALTLSGSY--LTFPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
++ +D + V + H + S GY I L ++LK + + G +
Sbjct: 117 IIEIDEEGVIYDDGQLKVSAYSLKHPVISYGYRIEEHDKPGALDAQRLKAEGVP-GGPWM 175
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTT-SEFMLN-PRNADALRAKIL 274
+ LK+ G E+T D + P+ + GDT E L +NAD ++
Sbjct: 176 QTLKQGG-EVTLDDGRVICGADYLGEPQRGRHLVIFGDTAPCENALKLAQNAD-----VI 229
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVV 318
+ EAT LD M+ E A GH S ++ A L + V +
Sbjct: 230 VLEAT-LDGTMT-EKANSRGH---SSTVQTATLARDAGVGTLIA 268
>gi|312967571|ref|ZP_07781786.1| ribonuclease Z [Escherichia coli 2362-75]
gi|417756532|ref|ZP_12404607.1| ribonuclease Z [Escherichia coli DEC2B]
gi|418997790|ref|ZP_13545384.1| ribonuclease Z [Escherichia coli DEC1A]
gi|419002821|ref|ZP_13550348.1| ribonuclease Z [Escherichia coli DEC1B]
gi|419008515|ref|ZP_13555946.1| ribonuclease Z [Escherichia coli DEC1C]
gi|419014199|ref|ZP_13561549.1| ribonuclease Z [Escherichia coli DEC1D]
gi|419019198|ref|ZP_13566505.1| ribonuclease Z [Escherichia coli DEC1E]
gi|419024701|ref|ZP_13571927.1| ribonuclease Z [Escherichia coli DEC2A]
gi|419029739|ref|ZP_13576902.1| ribonuclease Z [Escherichia coli DEC2C]
gi|419035664|ref|ZP_13582750.1| ribonuclease Z [Escherichia coli DEC2D]
gi|419040427|ref|ZP_13587455.1| ribonuclease Z [Escherichia coli DEC2E]
gi|312287768|gb|EFR15673.1| ribonuclease Z [Escherichia coli 2362-75]
gi|377843617|gb|EHU08657.1| ribonuclease Z [Escherichia coli DEC1A]
gi|377844033|gb|EHU09070.1| ribonuclease Z [Escherichia coli DEC1C]
gi|377847700|gb|EHU12698.1| ribonuclease Z [Escherichia coli DEC1B]
gi|377857052|gb|EHU21907.1| ribonuclease Z [Escherichia coli DEC1D]
gi|377860252|gb|EHU25078.1| ribonuclease Z [Escherichia coli DEC1E]
gi|377863485|gb|EHU28290.1| ribonuclease Z [Escherichia coli DEC2A]
gi|377873948|gb|EHU38579.1| ribonuclease Z [Escherichia coli DEC2B]
gi|377877921|gb|EHU42510.1| ribonuclease Z [Escherichia coli DEC2C]
gi|377880020|gb|EHU44592.1| ribonuclease Z [Escherichia coli DEC2D]
gi|377890467|gb|EHU54924.1| ribonuclease Z [Escherichia coli DEC2E]
Length = 305
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 16/123 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKK 235
+V + GE ++ +R V + H + GY I +++ L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRI--------EEHDKLGALNAQALKA 166
Query: 236 SGV 238
+GV
Sbjct: 167 AGV 169
>gi|408383254|ref|ZP_11180791.1| Ribonuclease Z [Methanobacterium formicicum DSM 3637]
gi|407814036|gb|EKF84674.1| Ribonuclease Z [Methanobacterium formicicum DSM 3637]
Length = 302
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 40/222 (18%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPS 154
FD G R + + + +FITH H DH GLP + S P I+ P
Sbjct: 33 FDCGEGTQRQMARIKLSPMKVDHIFITHLHGDHFLGLPGMIQSMAFRGRTEPLHIYGPEG 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIYL 213
I + VE + ++LG L+ + A +V E ++ D ++ THH + + Y +
Sbjct: 93 IIKTVESI----KNLGYYALSFPIHAYEVTEGTVLQTDEYLIECCPTHHSVLNLAYSVEE 148
Query: 214 LR--KKLKKQYIHLK---GKQIEKLKKS-GVEITDIILSPE-----------VAFTGDT- 255
R K L+++ I L G KL+K VE+ ++ P+ V ++GDT
Sbjct: 149 KRSPKFLREKAIQLGLKPGPDFGKLQKGIPVEVDGTMIKPDQVLGEKRKGRKVVYSGDTK 208
Query: 256 -TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHT 296
E + AD +LI E+T+ + S A ++GH+
Sbjct: 209 PCPEMVQFASGAD-----VLIHESTYESAQES--KAIENGHS 243
>gi|384265998|ref|YP_005421705.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387899017|ref|YP_006329313.1| ribonuclease Z [Bacillus amyloliquefaciens Y2]
gi|380499351|emb|CCG50389.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387173127|gb|AFJ62588.1| ribonuclease Z [Bacillus amyloliquefaciens Y2]
Length = 308
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 34/202 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK +E +H + ++ L
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIET--SLHVTATHLTYPLT 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ ++ G +E +V H + + GY + L +LK+ I G
Sbjct: 117 VHEIEEGTVFE-DEQFIVTAASVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIP-PGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLN--PRNADALRAKIL 274
+K+KK G +T D + P+ VAF+GDT + + RNAD +L
Sbjct: 175 QKIKK-GETVTLDDGRIINGRDFLEPPKKGRIVAFSGDTRASERVTELARNAD-----VL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHT 296
+ EATF ++ + H H T
Sbjct: 229 VHEATFAKEDAKLAHNYYHATT 250
>gi|310642368|ref|YP_003947126.1| ribonuclease z [Paenibacillus polymyxa SC2]
gi|309247318|gb|ADO56885.1| Ribonuclease Z [Paenibacillus polymyxa SC2]
Length = 320
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 28/210 (13%)
Query: 105 DIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLF 163
++ R P + + +FITH H DH+ GLP ++SR P T++ PP +++ +E
Sbjct: 55 EVLRSPLKLSRLEKIFITHLHGDHLFGLPGLLSSRAYQGGTAPLTVYGPPGLQQYIELSL 114
Query: 164 EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKK 217
I +S N +L+ + G V H I S GY I L ++
Sbjct: 115 GISQSRINYQLH---IVEHTGGVLFDDGQFRVESALLDHRIDSYGYRIVEMDKPGKLNQE 171
Query: 218 LKKQYIHLKGKQIEKLKKS-GVEI--------TDIILSPE----VAFTGDTTSEFMLNPR 264
L ++Y G KLK+ VE+ D++ SP+ V GDT P
Sbjct: 172 LLERYGIKPGPVYGKLKRGESVEVEGGVILHPQDVLGSPKKGRIVTILGDTRP----CPN 227
Query: 265 NADALR-AKILITEATFLDDEMSIEHAQQH 293
R A +++ EATFL D + H
Sbjct: 228 TVVLARDATVVVHEATFLHDLADTAYEYHH 257
>gi|159906130|ref|YP_001549792.1| ribonuclease Z [Methanococcus maripaludis C6]
gi|254808648|sp|A9AB37.1|RNZ_METM6 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|159887623|gb|ABX02560.1| ribonuclease Z [Methanococcus maripaludis C6]
Length = 308
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 35/233 (15%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R I + N +FI+H H DHI GLP + S KP I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFISHLHGDHILGLPGLLQSVAFQGRTKPLNIYGPEE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ +E + + + +N+ ++ E ++ V F H +P+ YV +
Sbjct: 93 TAKMLENILNVGYHSIDYPINVYEISSKTPEKIISTDNYEVYSFPVVHSVPALAYVFRQV 152
Query: 215 RK------KLKKQYIHLKGKQIEKLKKS-GVEIT-------DIILSPE----VAFTGDTT 256
+K K+ K I + G +++LK VE+ D+ L P+ V ++GDT
Sbjct: 153 KKPRMDLEKVNKLGIEI-GPDLKRLKDGFSVELNGKIITLEDVTLPPKKGICVGYSGDTI 211
Query: 257 --SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVL 307
+EF R L+ LI EATF D+ ++A++ H+ + + + A L
Sbjct: 212 PLNEFAEFLRE---LKCTTLIHEATF--DKTMDKNAKETLHSTVHDALNIAKL 259
>gi|306490860|gb|ADM94979.1| metal-dependent hydrolase [uncultured candidate division JS1
bacterium]
Length = 315
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 34/222 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +A+RGL +K IF P +K ++ F+ S ++
Sbjct: 59 IFISHLHGDHIFGLPGLLATRGLLGIKKSINIFGPIGLKNYLKNNFD--YSYTHIPYFYH 116
Query: 178 LVALDVGETYEMRN------DIVVRPFKTHHVIPSQGYVIY---LLRKKLKKQYIHLK-- 226
+ ++ E+Y N +I V +H + S GY I + R L ++ + L
Sbjct: 117 IYTIE-KESYLSNNLLWENGNISVYCALLNHYLDSFGYAIIEKNIRRNILVEKLVKLGIP 175
Query: 227 -GKQIEKLKKSGVE-------------ITDIILSPEVAFTGDTTSEFMLNPRNADALRAK 272
G +K K++G+ I + I ++ + GDTT N A A
Sbjct: 176 PGPIYKKFKENGIVNLDDGTVLKSADFIKESISIKKLCYCGDTT---FSNNAVILAQEAD 232
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS 314
+LI E TF + A+Q H+ + E I+ A L K++
Sbjct: 233 LLIHEGTFCSKRK--QEAKQSYHSTIEEAIKVARLARVKKLA 272
>gi|239502887|ref|ZP_04662197.1| Ribonuclease Z [Acinetobacter baumannii AB900]
gi|421676934|ref|ZP_16116829.1| putative ribonuclease Z [Acinetobacter baumannii OIFC111]
gi|410393891|gb|EKP46242.1| putative ribonuclease Z [Acinetobacter baumannii OIFC111]
Length = 318
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 111 TRAIQQNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRS 168
TR QN + ITH H DH GL +AS G+ P + + P +++++ FEI
Sbjct: 49 TRLSLQNLIAICITHVHGDHCYGLVGLLASAGMNARSKPLVVIAP---KEIQQWFEITAQ 105
Query: 169 LGNVELNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL 213
L ++ L + +DV E ++ +++ ++ H +PS + IY+
Sbjct: 106 LTDLHLPYSIKFIDVNEATQPQQLTDELFIQAHPLSHRVPSFAFSIYI 153
>gi|381184019|ref|ZP_09892696.1| ribonuclease Z [Listeriaceae bacterium TTU M1-001]
gi|380316087|gb|EIA19529.1| ribonuclease Z [Listeriaceae bacterium TTU M1-001]
Length = 304
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 92/215 (42%), Gaps = 32/215 (14%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R P R + +FITH H DHI GLP ++SR + T++ PP I ++ E+
Sbjct: 48 RSPIRLSKLEKIFITHLHGDHIFGLPGLLSSRSFQGGETELTVYGPPGIALYIKDSLELS 107
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLK 219
S ++ L +V ++ GE + + VV + H I S GY + L KLK
Sbjct: 108 GS--HLTYPLQIVEVESGEIFSDKQWKVVCD-ELDHGIQSFGYRLMESAKPGSLDAAKLK 164
Query: 220 KQ-------YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNP--RN 265
+ Y LK + L + PE + GDT P RN
Sbjct: 165 AEGVPAGPLYQELKEGKTVTLPDGRTIDGQAFIGPEQKGRIITIFGDTRQHKNELPLARN 224
Query: 266 ADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
AD I++ EATF + +E A+++ H+ +E
Sbjct: 225 AD-----IIVHEATF--EASKVEMAKEYMHSTTTE 252
>gi|448735735|ref|ZP_21717923.1| metal-dependent RNase [Halococcus salifodinae DSM 8989]
gi|445797313|gb|EMA47789.1| metal-dependent RNase [Halococcus salifodinae DSM 8989]
Length = 603
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI---KEDVEKLFEIHR 167
VF+TH H+DH GGLP+ A RGL P I PP+I K +E +IHR
Sbjct: 81 VFLTHAHIDHSGGLPILEA-RGLLADDAPIIATPPTIEIAKTLLEDSLKIHR 131
>gi|425058500|ref|ZP_18461881.1| ribonuclease Z [Enterococcus faecium 504]
gi|403038441|gb|EJY49657.1| ribonuclease Z [Enterococcus faecium 504]
Length = 313
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 102/238 (42%), Gaps = 36/238 (15%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R R + +FITH H DHI GLP ++SR P I+ P I+E ++ +
Sbjct: 48 RTTIRPRKIGKIFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGPKGIEEYIK----VS 103
Query: 167 RSLGNVELNLDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH 224
+ L+ L +++ ET + D V K +H I S GY + K + Q
Sbjct: 104 LGISQTRLSYPLKFIELNETAPIFTDQQFSVYTKKLNHGIDSFGYRVVEHDHKGELQVDR 163
Query: 225 LK------GKQIEKLKKS-GVEITD-------IILSPE-----VAFTGDT--TSEFMLNP 263
LK G KLK+ +++ D + P+ V GDT T ++
Sbjct: 164 LKELGIPSGPLYGKLKQGETIQLEDGRTINGKDFVGPDKKGRIVTILGDTRKTHNSVVLA 223
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI---RQAVLKLQSKVSAKVV 318
N+D IL+ E+TF DE + H H TH + ++ QA L + +SA+ +
Sbjct: 224 ENSD-----ILVHESTFNKDEARMAHNYFHSTTHQAAEVAKEAQAKRLLLTHISARYL 276
>gi|390453631|ref|ZP_10239159.1| ribonuclease Z [Paenibacillus peoriae KCTC 3763]
Length = 309
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 28/210 (13%)
Query: 105 DIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLF 163
+I R P + + +FITH H DH+ GLP ++SR P T++ PP +K+ +E
Sbjct: 45 EILRSPLKLSRLEKIFITHLHGDHLFGLPGLLSSRAYQGGTAPLTVYGPPGLKQYIELSL 104
Query: 164 EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKK 217
I +S N +L+ + G V H I S GY I L ++
Sbjct: 105 GISQSRINYQLH---IVEHTGGVLFDDGQFRVESALLDHRIDSFGYRIVEMDKPGKLNQE 161
Query: 218 LKKQY------IHLKGKQIEKLKKSGVEI---TDIILSPE----VAFTGDTTSEFMLNPR 264
L +QY I+ K K+ E ++ G I D++ SP+ + GDT P
Sbjct: 162 LLEQYGIKPGPIYGKLKRGESVEVEGGVILHPQDVLGSPKKGRIITILGDTRP----CPN 217
Query: 265 NAD-ALRAKILITEATFLDDEMSIEHAQQH 293
A A +++ EATFL + + H
Sbjct: 218 TVVLAQDATVVVHEATFLHELADTAYEYHH 247
>gi|227431959|ref|ZP_03913979.1| ribonuclease Z [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
gi|227352244|gb|EEJ42450.1| ribonuclease Z [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
Length = 318
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 40/225 (17%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + +FITH H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFITHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVI 211
+KE V+ I + + ++ V L G +E +V P + H I + G+ +
Sbjct: 96 KGVKEFVQTALRISET--RLSYPIEYVDLTEGVIFEDHTFQVVAAPMR--HRIETWGFRV 151
Query: 212 Y-------LLRKKLKKQ-------YIHLK-GKQIEKLKKSGVEITDIILSPEVAFTGDTT 256
LL KLK++ Y LK GK + + V D I +
Sbjct: 152 IEKDHPGELLVDKLKQENIPSGPVYGQLKAGKTVTLPEGRIVNGHDFIGKAQKG----RI 207
Query: 257 SEFMLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHT 296
+L+ R D A A +L+ E+T+ E + A+ H H+
Sbjct: 208 VTLILDTRPNDNVEWLAKNADVLVHESTYGSSEEEAKMAKAHAHS 252
>gi|448736741|ref|ZP_21718828.1| metal-dependent RNase [Halococcus thailandensis JCM 13552]
gi|445805838|gb|EMA56034.1| metal-dependent RNase [Halococcus thailandensis JCM 13552]
Length = 606
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI---KEDVEKLFEIHR 167
VF+TH H+DH GGLP+ A RGL P I PP+I K +E +IHR
Sbjct: 88 VFLTHAHIDHSGGLPILEA-RGLLADDAPIIATPPTIEIAKTLLEDSLKIHR 138
>gi|257878181|ref|ZP_05657834.1| ribonuclease Z [Enterococcus faecium 1,230,933]
gi|257881036|ref|ZP_05660689.1| ribonuclease Z [Enterococcus faecium 1,231,502]
gi|257884697|ref|ZP_05664350.1| ribonuclease Z [Enterococcus faecium 1,231,501]
gi|257889621|ref|ZP_05669274.1| ribonuclease Z [Enterococcus faecium 1,231,410]
gi|257892438|ref|ZP_05672091.1| ribonuclease Z [Enterococcus faecium 1,231,408]
gi|260559227|ref|ZP_05831413.1| ribonuclease Z [Enterococcus faecium C68]
gi|261207760|ref|ZP_05922445.1| ribonuclease Z [Enterococcus faecium TC 6]
gi|289565835|ref|ZP_06446277.1| ribonuclease Z [Enterococcus faecium D344SRF]
gi|293553444|ref|ZP_06674072.1| ribonuclease Z [Enterococcus faecium E1039]
gi|293560345|ref|ZP_06676840.1| ribonuclease Z [Enterococcus faecium E1162]
gi|293569803|ref|ZP_06680890.1| ribonuclease Z [Enterococcus faecium E1071]
gi|294614050|ref|ZP_06693979.1| ribonuclease Z [Enterococcus faecium E1636]
gi|294617214|ref|ZP_06696864.1| ribonuclease Z [Enterococcus faecium E1679]
gi|294620548|ref|ZP_06699849.1| ribonuclease Z [Enterococcus faecium U0317]
gi|314939158|ref|ZP_07846415.1| ribonuclease Z [Enterococcus faecium TX0133a04]
gi|314943927|ref|ZP_07850644.1| ribonuclease Z [Enterococcus faecium TX0133C]
gi|314948037|ref|ZP_07851440.1| ribonuclease Z [Enterococcus faecium TX0082]
gi|314953288|ref|ZP_07856219.1| ribonuclease Z [Enterococcus faecium TX0133A]
gi|314993367|ref|ZP_07858734.1| ribonuclease Z [Enterococcus faecium TX0133B]
gi|314994953|ref|ZP_07860074.1| ribonuclease Z [Enterococcus faecium TX0133a01]
gi|383328336|ref|YP_005354220.1| Ribonuclease Z [Enterococcus faecium Aus0004]
gi|389868486|ref|YP_006375909.1| ribonuclease Z [Enterococcus faecium DO]
gi|406581399|ref|ZP_11056555.1| Ribonuclease Z [Enterococcus sp. GMD4E]
gi|406583697|ref|ZP_11058751.1| Ribonuclease Z [Enterococcus sp. GMD3E]
gi|406586015|ref|ZP_11060966.1| Ribonuclease Z [Enterococcus sp. GMD2E]
gi|406591403|ref|ZP_11065686.1| Ribonuclease Z [Enterococcus sp. GMD1E]
gi|410938171|ref|ZP_11370028.1| ribonuclease Z [Enterococcus sp. GMD5E]
gi|415890234|ref|ZP_11549434.1| ribonuclease Z [Enterococcus faecium E4453]
gi|416138563|ref|ZP_11599061.1| ribonuclease Z [Enterococcus faecium E4452]
gi|424790566|ref|ZP_18217099.1| ribonuclease Z [Enterococcus faecium V689]
gi|424796645|ref|ZP_18222345.1| ribonuclease Z [Enterococcus faecium S447]
gi|424819680|ref|ZP_18244749.1| ribonuclease Z [Enterococcus faecium R501]
gi|424855846|ref|ZP_18280140.1| ribonuclease Z [Enterococcus faecium R499]
gi|424877874|ref|ZP_18301515.1| ribonuclease Z [Enterococcus faecium R497]
gi|424945328|ref|ZP_18361031.1| ribonuclease Z [Enterococcus faecium R496]
gi|424953519|ref|ZP_18368473.1| ribonuclease Z [Enterococcus faecium R494]
gi|424957259|ref|ZP_18371995.1| ribonuclease Z [Enterococcus faecium R446]
gi|424961503|ref|ZP_18375943.1| ribonuclease Z [Enterococcus faecium P1986]
gi|424963896|ref|ZP_18378044.1| ribonuclease Z [Enterococcus faecium P1190]
gi|424967518|ref|ZP_18381212.1| ribonuclease Z [Enterococcus faecium P1140]
gi|424969726|ref|ZP_18383279.1| ribonuclease Z [Enterococcus faecium P1139]
gi|424974945|ref|ZP_18388146.1| ribonuclease Z [Enterococcus faecium P1137]
gi|424976355|ref|ZP_18389451.1| ribonuclease Z [Enterococcus faecium P1123]
gi|424981849|ref|ZP_18394552.1| ribonuclease Z [Enterococcus faecium ERV99]
gi|424985274|ref|ZP_18397758.1| ribonuclease Z [Enterococcus faecium ERV69]
gi|424987221|ref|ZP_18399605.1| ribonuclease Z [Enterococcus faecium ERV38]
gi|424992003|ref|ZP_18404109.1| ribonuclease Z [Enterococcus faecium ERV26]
gi|424994170|ref|ZP_18406123.1| ribonuclease Z [Enterococcus faecium ERV168]
gi|424998570|ref|ZP_18410248.1| ribonuclease Z [Enterococcus faecium ERV165]
gi|425001540|ref|ZP_18413045.1| ribonuclease Z [Enterococcus faecium ERV161]
gi|425004179|ref|ZP_18415507.1| ribonuclease Z [Enterococcus faecium ERV102]
gi|425007433|ref|ZP_18418564.1| ribonuclease Z [Enterococcus faecium ERV1]
gi|425010862|ref|ZP_18421792.1| ribonuclease Z [Enterococcus faecium E422]
gi|425013930|ref|ZP_18424629.1| ribonuclease Z [Enterococcus faecium E417]
gi|425017575|ref|ZP_18428075.1| ribonuclease Z [Enterococcus faecium C621]
gi|425021372|ref|ZP_18431630.1| ribonuclease Z [Enterococcus faecium C497]
gi|425022936|ref|ZP_18433088.1| ribonuclease Z [Enterococcus faecium C1904]
gi|425032701|ref|ZP_18437725.1| ribonuclease Z [Enterococcus faecium 515]
gi|425036475|ref|ZP_18441224.1| ribonuclease Z [Enterococcus faecium 514]
gi|425039314|ref|ZP_18443865.1| ribonuclease Z [Enterococcus faecium 513]
gi|425041269|ref|ZP_18445676.1| ribonuclease Z [Enterococcus faecium 511]
gi|425046260|ref|ZP_18450289.1| ribonuclease Z [Enterococcus faecium 510]
gi|425048319|ref|ZP_18452228.1| ribonuclease Z [Enterococcus faecium 509]
gi|425051710|ref|ZP_18455360.1| ribonuclease Z [Enterococcus faecium 506]
gi|425060699|ref|ZP_18463981.1| ribonuclease Z [Enterococcus faecium 503]
gi|427394986|ref|ZP_18887908.1| ribonuclease Z [Enterococcus durans FB129-CNAB-4]
gi|430820209|ref|ZP_19438845.1| ribonuclease Z [Enterococcus faecium E0045]
gi|430822218|ref|ZP_19440797.1| ribonuclease Z [Enterococcus faecium E0120]
gi|430825269|ref|ZP_19443474.1| ribonuclease Z [Enterococcus faecium E0164]
gi|430828522|ref|ZP_19446642.1| ribonuclease Z [Enterococcus faecium E0269]
gi|430830468|ref|ZP_19448526.1| ribonuclease Z [Enterococcus faecium E0333]
gi|430833352|ref|ZP_19451365.1| ribonuclease Z [Enterococcus faecium E0679]
gi|430836048|ref|ZP_19454033.1| ribonuclease Z [Enterococcus faecium E0680]
gi|430837840|ref|ZP_19455790.1| ribonuclease Z [Enterococcus faecium E0688]
gi|430844340|ref|ZP_19462238.1| ribonuclease Z [Enterococcus faecium E1050]
gi|430846321|ref|ZP_19464181.1| ribonuclease Z [Enterococcus faecium E1133]
gi|430849926|ref|ZP_19467693.1| ribonuclease Z [Enterococcus faecium E1185]
gi|430852629|ref|ZP_19470360.1| ribonuclease Z [Enterococcus faecium E1258]
gi|430854570|ref|ZP_19472283.1| ribonuclease Z [Enterococcus faecium E1392]
gi|430858399|ref|ZP_19476027.1| ribonuclease Z [Enterococcus faecium E1552]
gi|430862137|ref|ZP_19479489.1| ribonuclease Z [Enterococcus faecium E1573]
gi|430864714|ref|ZP_19480539.1| ribonuclease Z [Enterococcus faecium E1574]
gi|430870818|ref|ZP_19483424.1| ribonuclease Z [Enterococcus faecium E1575]
gi|430959858|ref|ZP_19486993.1| ribonuclease Z [Enterococcus faecium E1576]
gi|431008979|ref|ZP_19489419.1| ribonuclease Z [Enterococcus faecium E1578]
gi|431195454|ref|ZP_19500432.1| ribonuclease Z [Enterococcus faecium E1620]
gi|431228550|ref|ZP_19501691.1| ribonuclease Z [Enterococcus faecium E1622]
gi|431258989|ref|ZP_19505166.1| ribonuclease Z [Enterococcus faecium E1623]
gi|431295275|ref|ZP_19507163.1| ribonuclease Z [Enterococcus faecium E1626]
gi|431369891|ref|ZP_19509590.1| ribonuclease Z [Enterococcus faecium E1627]
gi|431539677|ref|ZP_19517881.1| ribonuclease Z [Enterococcus faecium E1731]
gi|431622424|ref|ZP_19522851.1| ribonuclease Z [Enterococcus faecium E1904]
gi|431743652|ref|ZP_19532528.1| ribonuclease Z [Enterococcus faecium E2071]
gi|431745931|ref|ZP_19534768.1| ribonuclease Z [Enterococcus faecium E2134]
gi|431748561|ref|ZP_19537317.1| ribonuclease Z [Enterococcus faecium E2297]
gi|431754572|ref|ZP_19543233.1| ribonuclease Z [Enterococcus faecium E2883]
gi|431765358|ref|ZP_19553872.1| ribonuclease Z [Enterococcus faecium E4215]
gi|431766942|ref|ZP_19555402.1| ribonuclease Z [Enterococcus faecium E1321]
gi|431770562|ref|ZP_19558962.1| ribonuclease Z [Enterococcus faecium E1644]
gi|431773085|ref|ZP_19561419.1| ribonuclease Z [Enterococcus faecium E2369]
gi|431776048|ref|ZP_19564316.1| ribonuclease Z [Enterococcus faecium E2560]
gi|431778489|ref|ZP_19566700.1| ribonuclease Z [Enterococcus faecium E4389]
gi|431782148|ref|ZP_19570286.1| ribonuclease Z [Enterococcus faecium E6012]
gi|431785464|ref|ZP_19573489.1| ribonuclease Z [Enterococcus faecium E6045]
gi|447913076|ref|YP_007394488.1| Ribonuclease Z [Enterococcus faecium NRRL B-2354]
gi|257812409|gb|EEV41167.1| ribonuclease Z [Enterococcus faecium 1,230,933]
gi|257816694|gb|EEV44022.1| ribonuclease Z [Enterococcus faecium 1,231,502]
gi|257820535|gb|EEV47683.1| ribonuclease Z [Enterococcus faecium 1,231,501]
gi|257825981|gb|EEV52607.1| ribonuclease Z [Enterococcus faecium 1,231,410]
gi|257828817|gb|EEV55424.1| ribonuclease Z [Enterococcus faecium 1,231,408]
gi|260074984|gb|EEW63300.1| ribonuclease Z [Enterococcus faecium C68]
gi|260078143|gb|EEW65849.1| ribonuclease Z [Enterococcus faecium TC 6]
gi|289162378|gb|EFD10236.1| ribonuclease Z [Enterococcus faecium D344SRF]
gi|291587551|gb|EFF19428.1| ribonuclease Z [Enterococcus faecium E1071]
gi|291593096|gb|EFF24676.1| ribonuclease Z [Enterococcus faecium E1636]
gi|291596527|gb|EFF27770.1| ribonuclease Z [Enterococcus faecium E1679]
gi|291599785|gb|EFF30789.1| ribonuclease Z [Enterococcus faecium U0317]
gi|291602321|gb|EFF32545.1| ribonuclease Z [Enterococcus faecium E1039]
gi|291605690|gb|EFF35129.1| ribonuclease Z [Enterococcus faecium E1162]
gi|313590810|gb|EFR69655.1| ribonuclease Z [Enterococcus faecium TX0133a01]
gi|313592151|gb|EFR70996.1| ribonuclease Z [Enterococcus faecium TX0133B]
gi|313594670|gb|EFR73515.1| ribonuclease Z [Enterococcus faecium TX0133A]
gi|313597431|gb|EFR76276.1| ribonuclease Z [Enterococcus faecium TX0133C]
gi|313641538|gb|EFS06118.1| ribonuclease Z [Enterococcus faecium TX0133a04]
gi|313645517|gb|EFS10097.1| ribonuclease Z [Enterococcus faecium TX0082]
gi|364090988|gb|EHM33509.1| ribonuclease Z [Enterococcus faecium E4452]
gi|364094529|gb|EHM36689.1| ribonuclease Z [Enterococcus faecium E4453]
gi|378938030|gb|AFC63102.1| Ribonuclease Z [Enterococcus faecium Aus0004]
gi|388533735|gb|AFK58927.1| ribonuclease Z [Enterococcus faecium DO]
gi|402920627|gb|EJX41125.1| ribonuclease Z [Enterococcus faecium V689]
gi|402922695|gb|EJX43048.1| ribonuclease Z [Enterococcus faecium S447]
gi|402926011|gb|EJX46085.1| ribonuclease Z [Enterococcus faecium R501]
gi|402931079|gb|EJX50679.1| ribonuclease Z [Enterococcus faecium R499]
gi|402934231|gb|EJX53599.1| ribonuclease Z [Enterococcus faecium R497]
gi|402935205|gb|EJX54474.1| ribonuclease Z [Enterococcus faecium R496]
gi|402938795|gb|EJX57772.1| ribonuclease Z [Enterococcus faecium R494]
gi|402943499|gb|EJX61981.1| ribonuclease Z [Enterococcus faecium P1986]
gi|402943978|gb|EJX62430.1| ribonuclease Z [Enterococcus faecium R446]
gi|402947915|gb|EJX66095.1| ribonuclease Z [Enterococcus faecium P1190]
gi|402954205|gb|EJX71846.1| ribonuclease Z [Enterococcus faecium P1140]
gi|402955195|gb|EJX72750.1| ribonuclease Z [Enterococcus faecium P1137]
gi|402962442|gb|EJX79381.1| ribonuclease Z [Enterococcus faecium ERV99]
gi|402963489|gb|EJX80351.1| ribonuclease Z [Enterococcus faecium P1139]
gi|402966254|gb|EJX82905.1| ribonuclease Z [Enterococcus faecium ERV69]
gi|402969804|gb|EJX86189.1| ribonuclease Z [Enterococcus faecium P1123]
gi|402974875|gb|EJX90882.1| ribonuclease Z [Enterococcus faecium ERV38]
gi|402974916|gb|EJX90916.1| ribonuclease Z [Enterococcus faecium ERV26]
gi|402980678|gb|EJX96266.1| ribonuclease Z [Enterococcus faecium ERV168]
gi|402982622|gb|EJX98074.1| ribonuclease Z [Enterococcus faecium ERV165]
gi|402986150|gb|EJY01294.1| ribonuclease Z [Enterococcus faecium ERV161]
gi|402990280|gb|EJY05155.1| ribonuclease Z [Enterococcus faecium ERV102]
gi|402995032|gb|EJY09518.1| ribonuclease Z [Enterococcus faecium ERV1]
gi|402998637|gb|EJY12885.1| ribonuclease Z [Enterococcus faecium E422]
gi|402999898|gb|EJY14064.1| ribonuclease Z [Enterococcus faecium E417]
gi|403004048|gb|EJY17881.1| ribonuclease Z [Enterococcus faecium C621]
gi|403006910|gb|EJY20520.1| ribonuclease Z [Enterococcus faecium C497]
gi|403011523|gb|EJY24819.1| ribonuclease Z [Enterococcus faecium C1904]
gi|403012306|gb|EJY25543.1| ribonuclease Z [Enterococcus faecium 515]
gi|403014515|gb|EJY27510.1| ribonuclease Z [Enterococcus faecium 514]
gi|403016581|gb|EJY29392.1| ribonuclease Z [Enterococcus faecium 513]
gi|403024797|gb|EJY36930.1| ribonuclease Z [Enterococcus faecium 510]
gi|403026321|gb|EJY38319.1| ribonuclease Z [Enterococcus faecium 511]
gi|403031005|gb|EJY42653.1| ribonuclease Z [Enterococcus faecium 509]
gi|403037105|gb|EJY48428.1| ribonuclease Z [Enterococcus faecium 506]
gi|403042354|gb|EJY53314.1| ribonuclease Z [Enterococcus faecium 503]
gi|404452700|gb|EJZ99854.1| Ribonuclease Z [Enterococcus sp. GMD4E]
gi|404456256|gb|EKA02985.1| Ribonuclease Z [Enterococcus sp. GMD3E]
gi|404461791|gb|EKA07650.1| Ribonuclease Z [Enterococcus sp. GMD2E]
gi|404467784|gb|EKA12848.1| Ribonuclease Z [Enterococcus sp. GMD1E]
gi|410733458|gb|EKQ75382.1| ribonuclease Z [Enterococcus sp. GMD5E]
gi|425724122|gb|EKU87006.1| ribonuclease Z [Enterococcus durans FB129-CNAB-4]
gi|430439699|gb|ELA50020.1| ribonuclease Z [Enterococcus faecium E0045]
gi|430443276|gb|ELA53261.1| ribonuclease Z [Enterococcus faecium E0120]
gi|430446162|gb|ELA55847.1| ribonuclease Z [Enterococcus faecium E0164]
gi|430483070|gb|ELA60169.1| ribonuclease Z [Enterococcus faecium E0333]
gi|430483355|gb|ELA60433.1| ribonuclease Z [Enterococcus faecium E0269]
gi|430486807|gb|ELA63643.1| ribonuclease Z [Enterococcus faecium E0679]
gi|430488888|gb|ELA65536.1| ribonuclease Z [Enterococcus faecium E0680]
gi|430492120|gb|ELA68534.1| ribonuclease Z [Enterococcus faecium E0688]
gi|430496930|gb|ELA72989.1| ribonuclease Z [Enterococcus faecium E1050]
gi|430536621|gb|ELA76988.1| ribonuclease Z [Enterococcus faecium E1185]
gi|430539115|gb|ELA79377.1| ribonuclease Z [Enterococcus faecium E1133]
gi|430541463|gb|ELA81608.1| ribonuclease Z [Enterococcus faecium E1258]
gi|430545608|gb|ELA85581.1| ribonuclease Z [Enterococcus faecium E1552]
gi|430548229|gb|ELA88134.1| ribonuclease Z [Enterococcus faecium E1392]
gi|430549428|gb|ELA89260.1| ribonuclease Z [Enterococcus faecium E1573]
gi|430553495|gb|ELA93181.1| ribonuclease Z [Enterococcus faecium E1574]
gi|430556342|gb|ELA95850.1| ribonuclease Z [Enterococcus faecium E1576]
gi|430558777|gb|ELA98183.1| ribonuclease Z [Enterococcus faecium E1575]
gi|430560894|gb|ELB00186.1| ribonuclease Z [Enterococcus faecium E1578]
gi|430571832|gb|ELB10706.1| ribonuclease Z [Enterococcus faecium E1620]
gi|430574852|gb|ELB13615.1| ribonuclease Z [Enterococcus faecium E1622]
gi|430577084|gb|ELB15689.1| ribonuclease Z [Enterococcus faecium E1623]
gi|430581365|gb|ELB19810.1| ribonuclease Z [Enterococcus faecium E1626]
gi|430583638|gb|ELB21996.1| ribonuclease Z [Enterococcus faecium E1627]
gi|430593897|gb|ELB31872.1| ribonuclease Z [Enterococcus faecium E1731]
gi|430603394|gb|ELB40919.1| ribonuclease Z [Enterococcus faecium E1904]
gi|430606441|gb|ELB43792.1| ribonuclease Z [Enterococcus faecium E2071]
gi|430609571|gb|ELB46755.1| ribonuclease Z [Enterococcus faecium E2134]
gi|430613334|gb|ELB50350.1| ribonuclease Z [Enterococcus faecium E2297]
gi|430619166|gb|ELB55994.1| ribonuclease Z [Enterococcus faecium E2883]
gi|430628445|gb|ELB64880.1| ribonuclease Z [Enterococcus faecium E4215]
gi|430631815|gb|ELB68115.1| ribonuclease Z [Enterococcus faecium E1321]
gi|430635489|gb|ELB71585.1| ribonuclease Z [Enterococcus faecium E1644]
gi|430637372|gb|ELB73395.1| ribonuclease Z [Enterococcus faecium E2369]
gi|430641785|gb|ELB77579.1| ribonuclease Z [Enterococcus faecium E2560]
gi|430644035|gb|ELB79738.1| ribonuclease Z [Enterococcus faecium E4389]
gi|430647433|gb|ELB82879.1| ribonuclease Z [Enterococcus faecium E6045]
gi|430648163|gb|ELB83586.1| ribonuclease Z [Enterococcus faecium E6012]
gi|445188785|gb|AGE30427.1| Ribonuclease Z [Enterococcus faecium NRRL B-2354]
Length = 313
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 99/227 (43%), Gaps = 36/227 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR P I+ P I+E ++ + + L+
Sbjct: 59 IFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGPKGIEEYIK----VSLGISQTRLSYP 114
Query: 178 LVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQ 229
L +++ ET + D V K +H I S GY + K + Q LK G
Sbjct: 115 LKFIELNETAPIFTDQQFSVYTKKLNHGIDSFGYRVVEHDHKGELQVDRLKELGIPAGPL 174
Query: 230 IEKLKKS-GVEITD-------IILSPE-----VAFTGDT--TSEFMLNPRNADALRAKIL 274
KLK+ +++ D + P+ V GDT T ++ N+D IL
Sbjct: 175 YGKLKQGETIQLEDGRTINGKDFVGPDKKGRIVTILGDTRKTHNSVVLAENSD-----IL 229
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEDI---RQAVLKLQSKVSAKVV 318
+ E+TF DE + H H TH + ++ QA L + +SA+ +
Sbjct: 230 VHESTFNKDEARMAHNYFHSTTHQAAEVAKEAQAKRLLLTHISARYL 276
>gi|126179500|ref|YP_001047465.1| ribonuclease Z [Methanoculleus marisnigri JR1]
gi|125862294|gb|ABN57483.1| RNAse Z [Methanoculleus marisnigri JR1]
Length = 317
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 30/193 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELN 175
N VFITH H DH G+ V + P I+ PP + E V+ + I R +
Sbjct: 61 NAVFITHWHADHFLGVFGLVETLAFMGRTDPLPIYGPPWVGEFVDLVQRISRHTRGFSVT 120
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL---KKQYIHL------- 225
+ L+ G N VR F T H IP GYV+ + +++ I L
Sbjct: 121 AHV--LEHGSVVPF-NGYTVRAFTTLHGIPGLGYVLEEDERPGRFNRERAIELGVPPGPL 177
Query: 226 -----KGKQIEKLKKSGVEI----TDIILSP----EVAFTGDTTSEFMLNPRNADALR-A 271
+G+++ ++ + GVE D++ P ++ +TGD T P A +R A
Sbjct: 178 FGRLQRGEEV-RVVRDGVETAVRPADVMGEPRPGRKIVYTGD-TRPLQDQPGIAALIRGA 235
Query: 272 KILITEATFLDDE 284
+LI +ATF D E
Sbjct: 236 DLLIHDATFDDQE 248
>gi|320100786|ref|YP_004176378.1| RNAse Z [Desulfurococcus mucosus DSM 2162]
gi|319753138|gb|ADV64896.1| RNAse Z [Desulfurococcus mucosus DSM 2162]
Length = 249
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 79/203 (38%), Gaps = 48/203 (23%)
Query: 104 FDIGR-CPTRAIQQNF-------VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155
FD+G C ++ ++ VF+TH H DH GLP + + GL K P + P
Sbjct: 34 FDVGEGCQSKMLKAGLSPLKVKAVFVTHPHGDHYLGLPGVIQTMGLTGRKEPLKLLLPRE 93
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR 215
++ +L + R L ++ L GE Y I VR + +H + + G+
Sbjct: 94 LDEYFRLI-LERKLLKPGFPVEFTVLANGEVYR-DEKISVRAYPVNHGVEAYGF------ 145
Query: 216 KKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT--TSEFMLNPRNADALRAKI 273
++ + GK + +TGDT S + N R D +
Sbjct: 146 ------HVAVAGKTL-------------------CYTGDTMPCSSVVENCRGVD-----V 175
Query: 274 LITEATFLDDEMSIEHAQQHGHT 296
LI E+TF D H + H T
Sbjct: 176 LIHESTFTSDMGPEAHEEYHSTT 198
>gi|407718055|ref|YP_006795460.1| metal-dependent hydrolase of the beta-lactamase superfamily III()
[Leuconostoc carnosum JB16]
gi|407241811|gb|AFT81461.1| metal-dependent hydrolase of the beta-lactamase superfamily III()
[Leuconostoc carnosum JB16]
Length = 321
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 34/222 (15%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + +FI+H H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFISHLHGDHIFGLPGFLSSRSFQGANKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIV-VRPFKTHHVIPSQGYVI 211
++E VE + + L+ +V +++ E + V K H I S G+ +
Sbjct: 96 KGVEEFVETSLRVSET----RLSYPVVYVEIQEGVIFEDSTFKVIAAKMRHRITSWGFRV 151
Query: 212 -------YLLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPEVAFTGDTTS----EF 259
LL +KL+ + G +LK V ++D F G+ F
Sbjct: 152 EEKDHPGELLVEKLRDLNVP-SGPVFGQLKAGKRVTLSDGRTLDGADFIGEAQKGRVVTF 210
Query: 260 MLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHT 296
+L+ R D A +A +L+ E+T+ E + A+ H H+
Sbjct: 211 ILDTRPNDNIATLAYQADVLVHESTYGASEEEAKMAKAHAHS 252
>gi|327400955|ref|YP_004341794.1| Ribonuclease Z [Archaeoglobus veneficus SNP6]
gi|327316463|gb|AEA47079.1| Ribonuclease Z [Archaeoglobus veneficus SNP6]
Length = 303
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 106/261 (40%), Gaps = 46/261 (17%)
Query: 104 FDIGRCPTR-------AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIK 156
FD G R + + +FITH H DH GL + + L + P+ +
Sbjct: 35 FDCGEGTQRQMMIAKTGFKLDAIFITHLHTDHFIGLFGLLETMSLNERREKLAIYSPNAR 94
Query: 157 EDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIYLLR 215
L + ++ G EL+ + +++ + E++ D V FKT H++PS GY L+
Sbjct: 95 ----FLASLFKAFGYDELSYPIEVVELRDGDEVKFDGFKVVAFKTDHIVPSLGYA--LIE 148
Query: 216 KKLKKQYIHLKGKQI---------EKLKKSGVEITDIILSPE-----------VAFTGDT 255
K ++ K + + + +K V + +++PE + +TGDT
Sbjct: 149 KDRPGKFYREKAEALGIPPGPLYAKLVKGESVVVGGKVITPEMVVGKPRPGRKIVYTGDT 208
Query: 256 TSEFMLNPRNADALR-AKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA--VLKL--- 309
R + R A +LI +A F D +H + ++ +A V KL
Sbjct: 209 RP----CERTIEIARSADVLIHDAAFTSDLQEWAEETKHSTAREAAEVAKAAGVKKLVLT 264
Query: 310 --QSKVSAKVVPLTEGFKSVY 328
++ S PL E ++V+
Sbjct: 265 HVSARYSKDATPLLEEARAVF 285
>gi|56295604|emb|CAH04845.1| metal dependent hydrolase of beta-lactamase superfamily III (ElaC)
[uncultured archaeon]
Length = 312
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 48/260 (18%)
Query: 101 KCAFDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFV 151
+ FD G R + + +F+TH H DH G+P + + L +P I+
Sbjct: 39 RLLFDCGEGTQRQMMKARSGFMDIGHMFLTHFHADHTLGIPGLLQTMSLQGRTEPLNIYG 98
Query: 152 PPSIKEDVEKLFEIHRSLGNVELNLDLV--ALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
P + VE+ + LG + L+ ++ L G+ + + V F+T H +PS GY
Sbjct: 99 P----DYVEEYCSLLSRLGYLSLSYQVIPRRLSPGDVIKFKG-YSVEAFRTFHSVPSLGY 153
Query: 210 VIYLLRKKL---KKQYIHL---KGKQIEKLKK------SGVEIT--DIILSPE----VAF 251
+ +K K + + L +G KL + +G IT +++ P + +
Sbjct: 154 ALKEDQKPGRFNKARALELGVPEGPLFSKLHRGESVVVNGRTITSEEVVGEPRRGRTIVY 213
Query: 252 TGDT--TSEFMLNPRNADALRAKILITEATFLDDEMSIE----HAQQHGHTHLS--EDIR 303
TGDT ++ F+ + + AD + I+E+TF DD H+ G L+ ++
Sbjct: 214 TGDTVASASFLPHLQGAD-----VWISESTFGDDMAGKAEETLHSTAGGVAELAARAGVK 268
Query: 304 QAVLK-LQSKVSAKVVPLTE 322
Q VL + S+ S PL E
Sbjct: 269 QLVLTHVSSRYSTDTTPLLE 288
>gi|374314894|ref|YP_005061322.1| ribonuclease Z [Sphaerochaeta pleomorpha str. Grapes]
gi|359350538|gb|AEV28312.1| ribonuclease Z [Sphaerochaeta pleomorpha str. Grapes]
Length = 307
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 119 VFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + + S + P TI+ PP +KE ++ +R + ++ +N +
Sbjct: 58 IFISHMHADHVTGLPGILMLSSQVDRDDPLTIYGPPRLKEYIDS----NRKILDMYINYE 113
Query: 178 LVALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVI 211
++ V E + + V F+ H P GYV+
Sbjct: 114 IIVETVQEGVVLDLPEFTVSAFRLDHTKPCMGYVM 148
>gi|425305998|ref|ZP_18695707.1| ribonuclease Z [Escherichia coli N1]
gi|408228165|gb|EKI51707.1| ribonuclease Z [Escherichia coli N1]
Length = 305
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|326693133|ref|ZP_08230138.1| metal-dependent hydrolase of the beta-lactamase superfamily
III(putative) [Leuconostoc argentinum KCTC 3773]
Length = 314
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 38/224 (16%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + +FI+H H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFISHLHGDHIFGLPGFLSSRSFQGADKHEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI- 211
IK+ V+ + + + L V L G ++ + V+ K H I + G+ +
Sbjct: 96 KGIKDFVQTALRVSET--RLSYPLVYVELTEGVIFDDKTFRVIAA-KMRHRIDTWGFRVE 152
Query: 212 ------YLLRKKLKKQYI-------HLK-GKQIEKLKKSGVEITDIILSPEVAFTGDTTS 257
LL +KL++Q + LK GK++ ++ D I + +
Sbjct: 153 EKDHPGELLVEKLREQNVPSGPVFGQLKAGKRVTLPDGRILDGRDYIGAAQKG----RVV 208
Query: 258 EFMLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHT 296
F+L+ R D AL A +L+ E+T+ + + A+ H H+
Sbjct: 209 TFILDTRPNDNIEVLALNADVLVHESTYGAGDEEAKMARAHAHS 252
>gi|396082329|gb|AFN83939.1| putative beta-lactamase fold-containingexonuclease [Encephalitozoon
romaleae SJ-2008]
Length = 496
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 43/173 (24%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN----LKPPTIFVPPSIKEDVEKLFE-----IHRSL 169
V I+H HLDH G LP + G YN + PT V P + +D K+ E I
Sbjct: 61 VVISHFHLDHCGALPYFTEVCG-YNGPVYMTLPTKEVCPVLLDDFRKIVEGKGDSIFTYQ 119
Query: 170 GNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQ 229
+ + +++ ETY+ D + P+ HV+ + + +
Sbjct: 120 DILNCMKKVTTINMNETYKHDEDFYITPYYAGHVLGAAMFHV------------------ 161
Query: 230 IEKLKKSGVEITDIILSPEVAFTGD--TTSEFMLNPRNADALRAKILITEATF 280
++ V +TGD TT + L P + +R +LITE+T+
Sbjct: 162 -------------VVGDQSVVYTGDYSTTPDKHLGPASIKCVRPDLLITESTY 201
>gi|418325402|ref|ZP_12936608.1| ribonuclease Z [Staphylococcus epidermidis VCU071]
gi|365228004|gb|EHM69189.1| ribonuclease Z [Staphylococcus epidermidis VCU071]
Length = 306
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + N +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKINHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVI 211
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYPITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRI 150
>gi|403238201|ref|ZP_10916787.1| ribonuclease Z [Bacillus sp. 10403023]
Length = 307
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 85/209 (40%), Gaps = 48/209 (22%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKP-PTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DHI GLP ++ SR K T++ P IK +E + S ++ L+
Sbjct: 59 VFITHLHGDHIFGLPGFLGSRSFQGGKSLLTVYGPKGIKAFIETSLTV--STTHIRYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYI------- 223
+V ++ G +E + V + H I S GY I LL KL K+ I
Sbjct: 117 VVEIEEGVIFE-DDQFCVIAKELDHGIQSFGYRIVEKDLPGTLLVDKLSKEGIKPGPIYQ 175
Query: 224 --------------HLKGKQIEKLKKSGVEITDIILSPEVAFTGDT--TSEFMLNPRNAD 267
HL GK+ K G I I+ GDT E + ++AD
Sbjct: 176 KIKEGQTVVLEDGRHLNGKEYIGAPKKG-RIATIL--------GDTRYVKESIELAKDAD 226
Query: 268 ALRAKILITEATFLDDEMSIEHAQQHGHT 296
+LI EATF E + H H T
Sbjct: 227 -----LLIHEATFRSKEADLAHDYFHSTT 250
>gi|306814617|ref|ZP_07448779.1| ribonuclease Z [Escherichia coli NC101]
gi|432382009|ref|ZP_19624952.1| ribonuclease Z [Escherichia coli KTE15]
gi|432387821|ref|ZP_19630710.1| ribonuclease Z [Escherichia coli KTE16]
gi|432514571|ref|ZP_19751795.1| ribonuclease Z [Escherichia coli KTE224]
gi|432612079|ref|ZP_19848241.1| ribonuclease Z [Escherichia coli KTE72]
gi|432646841|ref|ZP_19882631.1| ribonuclease Z [Escherichia coli KTE86]
gi|432656423|ref|ZP_19892127.1| ribonuclease Z [Escherichia coli KTE93]
gi|432699700|ref|ZP_19934854.1| ribonuclease Z [Escherichia coli KTE169]
gi|432746312|ref|ZP_19980978.1| ribonuclease Z [Escherichia coli KTE43]
gi|432905528|ref|ZP_20114395.1| ribonuclease Z [Escherichia coli KTE194]
gi|432938621|ref|ZP_20136899.1| ribonuclease Z [Escherichia coli KTE183]
gi|432972472|ref|ZP_20161339.1| ribonuclease Z [Escherichia coli KTE207]
gi|432986028|ref|ZP_20174751.1| ribonuclease Z [Escherichia coli KTE215]
gi|433039269|ref|ZP_20226868.1| ribonuclease Z [Escherichia coli KTE113]
gi|433083227|ref|ZP_20269684.1| ribonuclease Z [Escherichia coli KTE133]
gi|433101815|ref|ZP_20287901.1| ribonuclease Z [Escherichia coli KTE145]
gi|433144859|ref|ZP_20330003.1| ribonuclease Z [Escherichia coli KTE168]
gi|433189053|ref|ZP_20373151.1| ribonuclease Z [Escherichia coli KTE88]
gi|305852011|gb|EFM52463.1| ribonuclease Z [Escherichia coli NC101]
gi|430906469|gb|ELC28069.1| ribonuclease Z [Escherichia coli KTE16]
gi|430907484|gb|ELC28982.1| ribonuclease Z [Escherichia coli KTE15]
gi|431041967|gb|ELD52462.1| ribonuclease Z [Escherichia coli KTE224]
gi|431148253|gb|ELE49544.1| ribonuclease Z [Escherichia coli KTE72]
gi|431180878|gb|ELE80765.1| ribonuclease Z [Escherichia coli KTE86]
gi|431190893|gb|ELE90279.1| ribonuclease Z [Escherichia coli KTE93]
gi|431243449|gb|ELF37836.1| ribonuclease Z [Escherichia coli KTE169]
gi|431291351|gb|ELF81864.1| ribonuclease Z [Escherichia coli KTE43]
gi|431432763|gb|ELH14440.1| ribonuclease Z [Escherichia coli KTE194]
gi|431463356|gb|ELH43549.1| ribonuclease Z [Escherichia coli KTE183]
gi|431481974|gb|ELH61681.1| ribonuclease Z [Escherichia coli KTE207]
gi|431500265|gb|ELH79281.1| ribonuclease Z [Escherichia coli KTE215]
gi|431551369|gb|ELI25355.1| ribonuclease Z [Escherichia coli KTE113]
gi|431602119|gb|ELI71628.1| ribonuclease Z [Escherichia coli KTE133]
gi|431619409|gb|ELI88333.1| ribonuclease Z [Escherichia coli KTE145]
gi|431661554|gb|ELJ28367.1| ribonuclease Z [Escherichia coli KTE168]
gi|431705759|gb|ELJ70349.1| ribonuclease Z [Escherichia coli KTE88]
Length = 305
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|120555084|ref|YP_959435.1| ribonuclease Z [Marinobacter aquaeolei VT8]
gi|166991482|sp|A1U2M9.1|RNZ_MARAV RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|120324933|gb|ABM19248.1| RNAse Z [Marinobacter aquaeolei VT8]
Length = 323
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 19/162 (11%)
Query: 87 SIGGHETCVIIPELKCAFDIG--------RCPTRAIQQNFVFITHGHLDHIGGLP-MYVA 137
++ G C+ P+ D G R +Q +FITH H DHI GLP + +
Sbjct: 18 NVTGLALCLSGPKPWYLVDCGEGTQHQLMRTRYSVMQLRAMFITHIHGDHIFGLPGLLTS 77
Query: 138 SRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRP 197
+ L +P I PP ++ ++ + E S ++ L+ + + + Y + + V
Sbjct: 78 ASMLGRTEPLDIIAPPQVRRFIDAVIE--NSDSSLSYPLNFINSEAPDFYWQDDHLGVTN 135
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVE 239
H +P + YV + L++Q Q EKL G+E
Sbjct: 136 VALSHRVPCRAYV--FTERNLERQL------QKEKLVADGIE 169
>gi|385265379|ref|ZP_10043466.1| ribonuclease Z [Bacillus sp. 5B6]
gi|385149875|gb|EIF13812.1| ribonuclease Z [Bacillus sp. 5B6]
Length = 308
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 34/202 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK +E + + ++ L
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLNV--TATHLTYPLT 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ ++ G +E +V H + + GY + L +LK+ I G
Sbjct: 117 VHEIEEGTVFE-DEQFIVTAASVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIR-PGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLN--PRNADALRAKIL 274
+K+KK G +T D + P+ VAF+GDT + + RNAD +L
Sbjct: 175 QKIKK-GETVTLDDGRIINGRDFLEPPKKGRIVAFSGDTRASERVTELARNAD-----VL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHT 296
+ EATF ++ + H H T
Sbjct: 229 VHEATFAKEDAKLAHNYYHATT 250
>gi|357158307|ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Brachypodium distachyon]
Length = 553
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 33/141 (23%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN---LKPPTIFVPPSIKEDVEKLF------------ 163
V ITH HLDHIG LP + G + + PT + P + ED K+
Sbjct: 67 VIITHFHLDHIGALPYFTEVCGYHGPIYMTYPTKALAPLMLEDYRKVMVDQRGEEEQYSY 126
Query: 164 -EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQY 222
+I R + V + +D+ +T ++ D+V+R + HV+ + ++Y Y
Sbjct: 127 EDILRCMKKV------IPVDLKQTIQVNRDLVIRAYYAGHVLGAA--MVYAKVGDAAMVY 178
Query: 223 I---------HLKGKQIEKLK 234
HL QIE+LK
Sbjct: 179 TGDYNMTPDRHLGAAQIERLK 199
>gi|257388166|ref|YP_003177939.1| beta-lactamase [Halomicrobium mukohataei DSM 12286]
gi|257170473|gb|ACV48232.1| beta-lactamase domain protein [Halomicrobium mukohataei DSM 12286]
Length = 256
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL-GNVELN 175
+ V +TH HLDH+ L +++ +R L TI PP ++ +E L ++H + G ++L
Sbjct: 54 DTVLLTHHHLDHVSDLDVFMKARWLAGDTDLTIAGPPGTRDLIEGLLDLHGYMRGRLDLT 113
Query: 176 LDLVALD 182
+D V +D
Sbjct: 114 IDEVGVD 120
>gi|157144795|ref|YP_001452114.1| ribonuclease Z [Citrobacter koseri ATCC BAA-895]
gi|166991097|sp|A8ADW5.1|RBN_CITK8 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|157082000|gb|ABV11678.1| hypothetical protein CKO_00522 [Citrobacter koseri ATCC BAA-895]
Length = 305
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + N +P TI+ P I+E E + S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMAGNAQPLTIYGPKGIREFTETALRLSGSW--TDYPLE 117
Query: 178 LVALDVGETYEMRNDIV--VRPFKTHHVIPSQGYVI 211
+V + G E+ ND + V F H + GY I
Sbjct: 118 IVEITAG---EILNDGLRKVTAFALEHPLECYGYRI 150
>gi|242053629|ref|XP_002455960.1| hypothetical protein SORBIDRAFT_03g028040 [Sorghum bicolor]
gi|241927935|gb|EES01080.1| hypothetical protein SORBIDRAFT_03g028040 [Sorghum bicolor]
Length = 558
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 43/207 (20%)
Query: 98 PELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN---LKPPTIFVPPS 154
P+ A P + V ITH HLDHIG LP + G + + PT + P
Sbjct: 45 PDFARALAAWGAPDFTTAISCVVITHFHLDHIGALPYFTEICGYHGPIYMTYPTKALAPF 104
Query: 155 IKEDVEKLFEIHRSLGNVELNLDL-------VALDVGETYEMRNDIVVRPFKTHHVIPSQ 207
+ ED K+ R D+ + +D+ +T ++ D+V+R + HVI +
Sbjct: 105 MLEDYRKVTMDQRGEEEQYSYEDILRCMKKVIPMDLKQTIQVDKDLVIRAYYAGHVIGAA 164
Query: 208 GYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD--TTSEFMLNPRN 265
+IY ++ D + +TGD T + L
Sbjct: 165 --MIY-------------------------AKVGDAAM----VYTGDYNMTPDRHLGAAQ 193
Query: 266 ADALRAKILITEATFLDDEMSIEHAQQ 292
D L+ +LITE+T+ +HA++
Sbjct: 194 IDHLKLDLLITESTYAKTIRDSKHARE 220
>gi|432543882|ref|ZP_19780725.1| ribonuclease Z [Escherichia coli KTE236]
gi|432549372|ref|ZP_19786140.1| ribonuclease Z [Escherichia coli KTE237]
gi|432622522|ref|ZP_19858553.1| ribonuclease Z [Escherichia coli KTE76]
gi|432816025|ref|ZP_20049809.1| ribonuclease Z [Escherichia coli KTE115]
gi|431074292|gb|ELD81856.1| ribonuclease Z [Escherichia coli KTE236]
gi|431079650|gb|ELD86604.1| ribonuclease Z [Escherichia coli KTE237]
gi|431159322|gb|ELE59879.1| ribonuclease Z [Escherichia coli KTE76]
gi|431364249|gb|ELG50793.1| ribonuclease Z [Escherichia coli KTE115]
Length = 305
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETTLRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|425067050|ref|ZP_18470166.1| ribonuclease Z [Proteus mirabilis WGLW6]
gi|404601721|gb|EKB02113.1| ribonuclease Z [Proteus mirabilis WGLW6]
Length = 305
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 97/227 (42%), Gaps = 36/227 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI GLP + SR + + P +I+ P IK +E + +S +
Sbjct: 57 NKIFITHLHGDHIFGLPGLLCSRSMGGTENPLSIYGPTGIKTFIETALTLSQSY--LTYP 114
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE---- 231
LD++ ++ G I V H +P GY + K K L+ + I
Sbjct: 115 LDIIEIEQGGFLFEEEGIRVSCGALSHPVPCFGYRLEEDNKPGKLNADKLEAENIPRGPW 174
Query: 232 -KLKKSGVEIT----DII-----LSPE-----VAFTGDT--TSEFMLNPRNADALRAKIL 274
KL K G +T II LS E + GDT T + NAD ++
Sbjct: 175 YKLLKQGKTVTLPDGRIIDGKDYLSTEIKGRCIVIFGDTQPTPNAVKLAENAD-----VI 229
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
+ EATF D + A GH S I+ A +L K +AK + +T
Sbjct: 230 VHEATFKHD--MADKANSRGH---SSTIQAA--ELAKKANAKRLIIT 269
>gi|429087438|ref|ZP_19150170.1| Ribonuclease Z [Cronobacter universalis NCTC 9529]
gi|426507241|emb|CCK15282.1| Ribonuclease Z [Cronobacter universalis NCTC 9529]
Length = 304
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 87/200 (43%), Gaps = 32/200 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P I+ P I E VE + S + LN+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGPKGIAEFVETTLRLSGSWTSYPLNVH 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIE 231
+ G+ ++ ++ V F H + GY I K LK G +
Sbjct: 119 EIT--EGQLFD-DGELTVTAFPLTHPVECYGYRIEEHDKPGALDAARLKAAGVAPGPLFQ 175
Query: 232 KLKKS---------GVEITDIILSP----EVAFTGDT--TSEFMLNPRNADALRAKILIT 276
+LK+ + TD + +P ++A GDT TS+ + R+ D ++I
Sbjct: 176 QLKRGETVTLPDGRTLRGTDYLSAPRPGKKIAIFGDTGPTSQAVNLARDVD-----VMIH 230
Query: 277 EATFLDDEMSIEHAQQHGHT 296
E T L+ M+ E A GH+
Sbjct: 231 ETT-LEAAMA-EKANGRGHS 248
>gi|398811313|ref|ZP_10570114.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Variovorax sp. CF313]
gi|398080853|gb|EJL71646.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Variovorax sp. CF313]
Length = 319
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 22/185 (11%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
V ITH H DH GLP +AS G+ P + P V + FE R L ++ L ++
Sbjct: 60 VCITHVHGDHCYGLPGLLASAGMNKRTKPLKLIAPL---PVWEWFEATRQLTDLHLPYEV 116
Query: 179 VALDVGE---TYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQI----- 230
+D+ YE + R H V PS Y + + ++++ + L+ +
Sbjct: 117 EHVDLENQALVYEAPGVRIERHLLRHRV-PSHAYRVQVETRRVRLKADALRAAGLPPGPA 175
Query: 231 EKLKKSGVEI---TDIILSPEVAFTGDTTSEFMLNPRNA------DALR-AKILITEATF 280
+ ++G ++ D++ S + T T+ +L NA DA R A++L+ EATF
Sbjct: 176 WRALQTGEDVPFNGDVLRSADYTETQVDTAVAVLGGDNAEPALLRDACRGAQLLVHEATF 235
Query: 281 LDDEM 285
D +
Sbjct: 236 TQDAL 240
>gi|153813336|ref|ZP_01966004.1| hypothetical protein RUMOBE_03753 [Ruminococcus obeum ATCC 29174]
gi|149830626|gb|EDM85717.1| ribonuclease Z [Ruminococcus obeum ATCC 29174]
Length = 303
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 30/204 (14%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ + TH H DHI GLP + + G + P V P + +E++ R + EL
Sbjct: 55 DVICFTHYHGDHISGLPGLLLTMGNADRTEPLTLVGP---KGLERVVNALRVIAP-ELPF 110
Query: 177 DLVALDVGETYEM--RNDIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHLKG- 227
++ +++ + E+ N + F+ +H + GY I +LR+ + K+Q I LK
Sbjct: 111 EIRFIEITKPQEVLELNGYRITAFRVNHNVICYGYTIEILRQGKFSPERAKEQAIPLKYW 170
Query: 228 ---KQIEKLKKSGVEIT-DIILSPE-----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
++ + ++ GV T D++L P+ V +T DT T + N +D + I
Sbjct: 171 NPLQKGQTIEVDGVVYTPDMVLGPDRKGIKVTYTTDTRPTESILRNAAESD-----LFIC 225
Query: 277 EATFLDDEMSIEHAQQHGHTHLSE 300
E + +E IE A+ + H E
Sbjct: 226 EGMY-GEEDKIEKAKGYKHMTFRE 248
>gi|419923065|ref|ZP_14441037.1| ribonuclease Z [Escherichia coli 541-15]
gi|388394639|gb|EIL55901.1| ribonuclease Z [Escherichia coli 541-15]
Length = 311
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|184158791|ref|YP_001847130.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ACICU]
gi|332875160|ref|ZP_08442993.1| putative ribonuclease Z [Acinetobacter baumannii 6014059]
gi|384131176|ref|YP_005513788.1| RNase Z [Acinetobacter baumannii 1656-2]
gi|384143909|ref|YP_005526619.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
MDR-ZJ06]
gi|385238206|ref|YP_005799545.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
TCDC-AB0715]
gi|387123277|ref|YP_006289159.1| beta-lactamase superfamily metal-dependent hydrolase [Acinetobacter
baumannii MDR-TJ]
gi|407933414|ref|YP_006849057.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
TYTH-1]
gi|416147360|ref|ZP_11601738.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
AB210]
gi|417569408|ref|ZP_12220266.1| putative ribonuclease Z [Acinetobacter baumannii OIFC189]
gi|417578400|ref|ZP_12229237.1| putative ribonuclease Z [Acinetobacter baumannii Naval-17]
gi|417869102|ref|ZP_12514097.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH1]
gi|417874066|ref|ZP_12518925.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH2]
gi|417879371|ref|ZP_12523943.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH3]
gi|417882430|ref|ZP_12526727.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH4]
gi|421203958|ref|ZP_15661089.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii AC12]
gi|421534622|ref|ZP_15980894.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii AC30]
gi|421628332|ref|ZP_16069115.1| putative ribonuclease Z [Acinetobacter baumannii OIFC180]
gi|421686166|ref|ZP_16125921.1| putative ribonuclease Z [Acinetobacter baumannii IS-143]
gi|421703957|ref|ZP_16143407.1| RNase Z [Acinetobacter baumannii ZWS1122]
gi|421707911|ref|ZP_16147292.1| RNase Z [Acinetobacter baumannii ZWS1219]
gi|421794352|ref|ZP_16230453.1| putative ribonuclease Z [Acinetobacter baumannii Naval-2]
gi|424051704|ref|ZP_17789236.1| ribonuclease Z [Acinetobacter baumannii Ab11111]
gi|424063254|ref|ZP_17800739.1| ribonuclease Z [Acinetobacter baumannii Ab44444]
gi|425753369|ref|ZP_18871253.1| putative ribonuclease Z [Acinetobacter baumannii Naval-113]
gi|445473903|ref|ZP_21453015.1| putative ribonuclease Z [Acinetobacter baumannii OIFC338]
gi|445477372|ref|ZP_21454288.1| putative ribonuclease Z [Acinetobacter baumannii Naval-78]
gi|183210385|gb|ACC57783.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Acinetobacter baumannii ACICU]
gi|322507396|gb|ADX02850.1| RNase Z [Acinetobacter baumannii 1656-2]
gi|323518706|gb|ADX93087.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
TCDC-AB0715]
gi|332736604|gb|EGJ67598.1| putative ribonuclease Z [Acinetobacter baumannii 6014059]
gi|333365591|gb|EGK47605.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
AB210]
gi|342228829|gb|EGT93706.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH3]
gi|342229820|gb|EGT94670.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH2]
gi|342231509|gb|EGT96318.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH1]
gi|342237791|gb|EGU02244.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH4]
gi|347594402|gb|AEP07123.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
MDR-ZJ06]
gi|385877769|gb|AFI94864.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Acinetobacter baumannii MDR-TJ]
gi|395553631|gb|EJG19637.1| putative ribonuclease Z [Acinetobacter baumannii OIFC189]
gi|395569097|gb|EJG29767.1| putative ribonuclease Z [Acinetobacter baumannii Naval-17]
gi|398326499|gb|EJN42646.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii AC12]
gi|404568768|gb|EKA73863.1| putative ribonuclease Z [Acinetobacter baumannii IS-143]
gi|404665260|gb|EKB33223.1| ribonuclease Z [Acinetobacter baumannii Ab11111]
gi|404674822|gb|EKB42558.1| ribonuclease Z [Acinetobacter baumannii Ab44444]
gi|407191004|gb|EKE62215.1| RNase Z [Acinetobacter baumannii ZWS1219]
gi|407191126|gb|EKE62336.1| RNase Z [Acinetobacter baumannii ZWS1122]
gi|407901995|gb|AFU38826.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
TYTH-1]
gi|408707439|gb|EKL52723.1| putative ribonuclease Z [Acinetobacter baumannii OIFC180]
gi|409987512|gb|EKO43693.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii AC30]
gi|410394499|gb|EKP46827.1| putative ribonuclease Z [Acinetobacter baumannii Naval-2]
gi|425497981|gb|EKU64070.1| putative ribonuclease Z [Acinetobacter baumannii Naval-113]
gi|444768615|gb|ELW92826.1| putative ribonuclease Z [Acinetobacter baumannii OIFC338]
gi|444776450|gb|ELX00492.1| putative ribonuclease Z [Acinetobacter baumannii Naval-78]
Length = 318
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L +
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARTKPLIVIAP---KEIQQWFEITAQLTDLHLPYSI 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL 213
+DV E ++ +++ ++ H +PS + IY+
Sbjct: 116 KFIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYI 153
>gi|432602825|ref|ZP_19839069.1| ribonuclease Z [Escherichia coli KTE66]
gi|432719392|ref|ZP_19954361.1| ribonuclease Z [Escherichia coli KTE9]
gi|431141399|gb|ELE43164.1| ribonuclease Z [Escherichia coli KTE66]
gi|431263204|gb|ELF55193.1| ribonuclease Z [Escherichia coli KTE9]
Length = 305
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|331658352|ref|ZP_08359314.1| ribonuclease Z [Escherichia coli TA206]
gi|331056600|gb|EGI28609.1| ribonuclease Z [Escherichia coli TA206]
Length = 305
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|402849703|ref|ZP_10897929.1| beta-lactamase domain protein [Rhodovulum sp. PH10]
gi|402499986|gb|EJW11672.1| beta-lactamase domain protein [Rhodovulum sp. PH10]
Length = 245
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY--NLKPPTIFVPPSIKEDVEKLFEIH---RSLGN 171
+ V ITH H DH GGLP V + +P T+ PP + + E+ S
Sbjct: 54 DLVLITHLHADHAGGLPFLVLDAQFFAKRTRPLTVAGPPGLASWYPQAMELAFPGSSRTR 113
Query: 172 VELNLDLVALDVGETYEMRNDIVVRPFKTHH---VIPSQGYVIYL 213
+ L LV L ET+ D+ VRP H + P+ GY I L
Sbjct: 114 QQFPLTLVELVADETWRF-ADLTVRPSPVAHGEAIAPAYGYRIEL 157
>gi|315303944|ref|ZP_07874400.1| ribonuclease Z [Listeria ivanovii FSL F6-596]
gi|313627682|gb|EFR96359.1| ribonuclease Z [Listeria ivanovii FSL F6-596]
Length = 306
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 95/227 (41%), Gaps = 34/227 (14%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R + + F+FITH H DHI GLP ++SR TI+ PP ++E +E +
Sbjct: 48 RSQIKLSKLEFIFITHMHGDHIFGLPGLLSSRSFQGGDSDLTIYGPPGVQEYIETSLRLS 107
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK 226
+ ++ + + V EM + + H + S GY I K+ LK
Sbjct: 108 GTRLTYKIIFEEIEPGVIFEDEM---FAITADELEHGMQSFGYRIVEKDKQGALNAAKLK 164
Query: 227 GKQIE------KLKKS-------GVEI--TDIILSPE----VAFTGD---TTSEFMLNPR 264
+E KLK G EI + I +P+ ++ GD T SEF L
Sbjct: 165 ADGVEPGPVFQKLKNGEIVTLPDGREIDGKNYIGNPQKGKIISIFGDTRATASEFRL-AE 223
Query: 265 NADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI--RQAVLKL 309
NAD +L+ EATF D+ + H T + ++ R V KL
Sbjct: 224 NAD-----VLVHEATFEGDKGKMAAEYMHSTTVQAAELAKRAGVKKL 265
>gi|432489948|ref|ZP_19731822.1| ribonuclease Z [Escherichia coli KTE213]
gi|432839956|ref|ZP_20073442.1| ribonuclease Z [Escherichia coli KTE140]
gi|433203888|ref|ZP_20387663.1| ribonuclease Z [Escherichia coli KTE95]
gi|431020565|gb|ELD33910.1| ribonuclease Z [Escherichia coli KTE213]
gi|431389129|gb|ELG72844.1| ribonuclease Z [Escherichia coli KTE140]
gi|431721067|gb|ELJ85066.1| ribonuclease Z [Escherichia coli KTE95]
Length = 305
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|157692882|ref|YP_001487344.1| ribonuclease Z [Bacillus pumilus SAFR-032]
gi|157681640|gb|ABV62784.1| ribonuclease Z [Bacillus pumilus SAFR-032]
Length = 309
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 30/208 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK V ++ ++ L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTIYGPKGIKAFVNATLSATQT--HLTYPLH 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLK-GKQ 229
++ +D G +E + V + H IP+ GY + L + LK+ I +K G
Sbjct: 117 IIEIDEGVVFE-DDTFQVEARRVSHGIPAYGYRVVEKDVPGALKAEDLKE--IGVKPGPL 173
Query: 230 IEKLKKSG---------VEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILIT 276
+KLK ++ TD + P+ VAF+GDT + A A +L+
Sbjct: 174 YQKLKNGDTVTLEDGRIIDGTDYLEPPKKGRIVAFSGDTR---LCENITRLAKDADVLVH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEDIRQ 304
EATF ++ + + H T + Q
Sbjct: 231 EATFGKEDADLAYNYYHSTTEQAAKTAQ 258
>gi|432793487|ref|ZP_20027571.1| ribonuclease Z [Escherichia coli KTE78]
gi|432799445|ref|ZP_20033467.1| ribonuclease Z [Escherichia coli KTE79]
gi|431339150|gb|ELG26212.1| ribonuclease Z [Escherichia coli KTE78]
gi|431343311|gb|ELG30275.1| ribonuclease Z [Escherichia coli KTE79]
Length = 311
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|147920763|ref|YP_685431.1| ribonuclease Z [Methanocella arvoryzae MRE50]
gi|110620827|emb|CAJ36105.1| RNase Z [Methanocella arvoryzae MRE50]
Length = 304
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 48/260 (18%)
Query: 101 KCAFDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFV 151
+ FD G R + + +F+TH H DH G+P + + L +P I+
Sbjct: 31 RLLFDCGEGTQRQMMKARSGFMDIGHMFLTHFHADHTLGIPGLLQTMSLQGRTEPLNIYG 90
Query: 152 PPSIKEDVEKLFEIHRSLGNVELNLDLV--ALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
P + VE+ + LG + L+ ++ L G+ + + V F+T H +PS GY
Sbjct: 91 P----DYVEEYCSLLSRLGYLSLSYQVIPRRLSPGDVIKFKG-YSVEAFRTFHSVPSLGY 145
Query: 210 VIYLLRKKL---KKQYIHL---KGKQIEKLKK------SGVEIT--DIILSPE----VAF 251
+ +K K + + L +G KL + +G IT +++ P + +
Sbjct: 146 ALKEDQKPGRFNKARALELGVPEGPLFSKLHRGESVVVNGRTITSEEVVGEPRRGRTIVY 205
Query: 252 TGDT--TSEFMLNPRNADALRAKILITEATFLDDEMSIE----HAQQHGHTHLS--EDIR 303
TGDT ++ F+ + + AD + I+E+TF DD H+ G L+ ++
Sbjct: 206 TGDTVASASFLPHLQGAD-----VWISESTFGDDMAGKAEETLHSTAGGVAELAARAGVK 260
Query: 304 QAVLK-LQSKVSAKVVPLTE 322
Q VL + S+ S PL E
Sbjct: 261 QLVLTHVSSRYSTDTTPLLE 280
>gi|422829667|ref|ZP_16877832.1| ribonuclease Z [Escherichia coli B093]
gi|371608651|gb|EHN97203.1| ribonuclease Z [Escherichia coli B093]
Length = 305
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|432680885|ref|ZP_19916259.1| ribonuclease Z [Escherichia coli KTE143]
gi|431220282|gb|ELF17662.1| ribonuclease Z [Escherichia coli KTE143]
Length = 305
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|402573323|ref|YP_006622666.1| RNAse Z [Desulfosporosinus meridiei DSM 13257]
gi|402254520|gb|AFQ44795.1| RNAse Z [Desulfosporosinus meridiei DSM 13257]
Length = 303
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 110 PTRAIQQNF-----VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLF 163
P R I+ F + TH H DHI GLP + S G K P T+ PP I++ V+ L
Sbjct: 43 PLRKIKWGFKGIDVILFTHYHADHISGLPGILLSIGNSGRKEPLTLMGPPGIQKVVDCLT 102
Query: 164 EIHRSLGNVELNLDLVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK 216
I L +L L+ L D T + ++I ++ H +P + I R+
Sbjct: 103 VISPGL---PYDLSLIELSDTNRTTTIMSNIEIKSIPVEHTLPCLAFSIEFKRQ 153
>gi|386624972|ref|YP_006144700.1| RNase BN, tRNA processing enzyme [Escherichia coli O7:K1 str. CE10]
gi|349738709|gb|AEQ13415.1| RNase BN, tRNA processing enzyme [Escherichia coli O7:K1 str. CE10]
Length = 311
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|331673779|ref|ZP_08374542.1| ribonuclease Z [Escherichia coli TA280]
gi|331069052|gb|EGI40444.1| ribonuclease Z [Escherichia coli TA280]
Length = 311
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|293410631|ref|ZP_06654207.1| ribonuclease Z [Escherichia coli B354]
gi|291471099|gb|EFF13583.1| ribonuclease Z [Escherichia coli B354]
Length = 311
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|170680744|ref|YP_001744468.1| ribonuclease Z [Escherichia coli SMS-3-5]
gi|170518462|gb|ACB16640.1| ribonuclease Z [Escherichia coli SMS-3-5]
Length = 311
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|110642477|ref|YP_670207.1| ribonuclease Z [Escherichia coli 536]
gi|191170037|ref|ZP_03031591.1| ribonuclease Z [Escherichia coli F11]
gi|300981142|ref|ZP_07175386.1| ribonuclease Z [Escherichia coli MS 200-1]
gi|422375528|ref|ZP_16455793.1| ribonuclease Z [Escherichia coli MS 60-1]
gi|432471636|ref|ZP_19713682.1| ribonuclease Z [Escherichia coli KTE206]
gi|432714048|ref|ZP_19949088.1| ribonuclease Z [Escherichia coli KTE8]
gi|433078448|ref|ZP_20264985.1| ribonuclease Z [Escherichia coli KTE131]
gi|123049023|sp|Q0TFH3.1|RBN_ECOL5 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|110344069|gb|ABG70306.1| protein ElaC [Escherichia coli 536]
gi|190909553|gb|EDV69138.1| ribonuclease Z [Escherichia coli F11]
gi|300307663|gb|EFJ62183.1| ribonuclease Z [Escherichia coli MS 200-1]
gi|324013131|gb|EGB82350.1| ribonuclease Z [Escherichia coli MS 60-1]
gi|430998025|gb|ELD14274.1| ribonuclease Z [Escherichia coli KTE206]
gi|431256825|gb|ELF49760.1| ribonuclease Z [Escherichia coli KTE8]
gi|431596281|gb|ELI66236.1| ribonuclease Z [Escherichia coli KTE131]
Length = 305
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|417238087|ref|ZP_12035818.1| ribonuclease BN [Escherichia coli 9.0111]
gi|386213865|gb|EII24290.1| ribonuclease BN [Escherichia coli 9.0111]
Length = 311
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|218700743|ref|YP_002408372.1| ribonuclease Z [Escherichia coli IAI39]
gi|432869636|ref|ZP_20090229.1| ribonuclease Z [Escherichia coli KTE147]
gi|254808632|sp|B7NNU8.1|RBN_ECO7I RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|218370729|emb|CAR18542.1| binuclear zinc phosphodiesterase [Escherichia coli IAI39]
gi|431410222|gb|ELG93384.1| ribonuclease Z [Escherichia coli KTE147]
Length = 305
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|304314168|ref|YP_003849315.1| ribonuclease Z [Methanothermobacter marburgensis str. Marburg]
gi|302587627|gb|ADL58002.1| predicted ribonuclease Z [Methanothermobacter marburgensis str.
Marburg]
Length = 306
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 89/208 (42%), Gaps = 42/208 (20%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI G+P + S G + P I+ PP I E E + + LG L+ D
Sbjct: 56 MFITHLHGDHILGIPGMIQSMGFRGRQEPLEIYGPPGIHELHESIMK----LGYFTLDFD 111
Query: 178 LVALDV-GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
+ +V G T D + H + + Y + KK+ L+ K IE K
Sbjct: 112 IHVHEVKGGTVLEEEDYRITSAPASHSVFNLAYCF-----EEKKRPRFLREKAIELGLKP 166
Query: 237 G-----------VEITDIILSPE-----------VAFTGDTT-SEFMLN-PRNADALRAK 272
G V + D I+ PE + ++GDT E +++ R AD
Sbjct: 167 GPAFGKLHRGIPVRVGDRIIKPEEVLGSPRRGVKICYSGDTRPCESVIDLAREAD----- 221
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSE 300
+LI E+TF + S + A + GH+ E
Sbjct: 222 LLIHESTF--EAGSEDKAAESGHSTARE 247
>gi|431499524|ref|ZP_19515103.1| ribonuclease Z [Enterococcus faecium E1634]
gi|430588160|gb|ELB26365.1| ribonuclease Z [Enterococcus faecium E1634]
Length = 313
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 36/227 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR P I+ P I+E ++ + + L+
Sbjct: 59 IFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGPKGIEEYIK----VSLGISQTRLSYP 114
Query: 178 LVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQ 229
L +++ ET + D V K +H I S GY + K + Q LK G
Sbjct: 115 LKFIELNETAPIFTDQQFSVYTKKLNHGIDSFGYRVVEHDHKGELQVDRLKELGIPAGPL 174
Query: 230 IEKLKKS-GVEITD-------IILSPE-----VAFTGDT--TSEFMLNPRNADALRAKIL 274
KLK+ +++ D + P+ V GDT T ++ N+D +L
Sbjct: 175 YGKLKQGETIQLEDGRTINGKDFVGPDKKGRIVTILGDTRKTHNSVVLAENSD-----VL 229
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEDI---RQAVLKLQSKVSAKVV 318
+ E+TF DE + H H TH + ++ QA L + +SA+ +
Sbjct: 230 VHESTFNKDEARMAHNYFHSTTHQAAEVAKEAQAKRLLLTHISARYL 276
>gi|339499904|ref|YP_004697939.1| ribonuclease Z [Spirochaeta caldaria DSM 7334]
gi|338834253|gb|AEJ19431.1| Ribonuclease Z [Spirochaeta caldaria DSM 7334]
Length = 309
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 119 VFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + + S + P TI PP I E +E R + ++ +N D
Sbjct: 58 IFISHTHADHVTGLPGILMLSSQVDRDDPLTIIGPPKIAEYIES----SRRVLDMYINYD 113
Query: 178 LVALDVGE---TYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V ++ E YE + +R F H P GYV
Sbjct: 114 IVVKEITEPGIVYEGEH-FHIRAFPLRHTKPCVGYVF 149
>gi|283768806|ref|ZP_06341717.1| putative ribonuclease Z [Bulleidia extructa W1219]
gi|283104592|gb|EFC05965.1| putative ribonuclease Z [Bulleidia extructa W1219]
Length = 303
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 31/211 (14%)
Query: 115 QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
Q + + +TH H DH GLP + + N L+P I+ P +KE ++ + + R +
Sbjct: 53 QIDTIILTHYHADHTAGLPGLLLTMAKNNRLEPIRIYGPKGLKEVIQGVTLLARF---IP 109
Query: 174 LNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL----KKQYIHLKGKQ 229
++ + +D + + ++ V+ F H + GY L RK K + ++L +
Sbjct: 110 FEVNCIEIDGHSVFSLE-ELQVQAFPLIHSVECLGYRFDLKRKPKFLVEKAKALNLPVQY 168
Query: 230 IEKLKKS------GVEIT-DIILSPE-----VAFTGDT--TSEFMLNPRNADALRAKILI 275
KL+K G EI +L E + + DT TS + AL+A +LI
Sbjct: 169 WSKLQKGETVLFEGKEILPSAVLGNERKGISLVYATDTRPTSSLV-----RQALQADLLI 223
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSE--DIRQ 304
E + D E IE+AQ + H + E DI Q
Sbjct: 224 AEGMYGDVE-KIENAQMNKHMMMQEACDIAQ 253
>gi|218289402|ref|ZP_03493636.1| ribonuclease Z [Alicyclobacillus acidocaldarius LAA1]
gi|218240508|gb|EED07689.1| ribonuclease Z [Alicyclobacillus acidocaldarius LAA1]
Length = 313
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 88/214 (41%), Gaps = 35/214 (16%)
Query: 104 FDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKL 162
FD P R + VFITH H DHI GLP +++R N+ P ++ PP I+ V
Sbjct: 47 FDAPFGPNRV---DRVFITHLHGDHIFGLPGLLSTRSFPENVGPLRLYGPPGIRAFVRAA 103
Query: 163 FEIHRSLGNVELNL-DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--YLLRKKLK 219
++ ++ + E+ + + + +E VR H IPS GY + +L
Sbjct: 104 IDVSQTHLSYEIQFREWTSPEPAPVHE--GLYTVRAALLDHAIPSYGYRVEEAPFPGRLH 161
Query: 220 KQYIHLKGKQIEKLK---KSGVEIT----------DIILSPE----VAFTGDTTSEFMLN 262
+ +G Q L K+G ++T D + E +A GDT
Sbjct: 162 ADRLRAEGLQPSPLWAQLKAGEDVTLPDGRRLRAADFVDPAEPGRVIAILGDT------R 215
Query: 263 PRNAD---ALRAKILITEATFLDDEMSIEHAQQH 293
P A A A L+ EATFLD + A H
Sbjct: 216 PCKAAVELARGADCLVHEATFLDRHAHLASAFFH 249
>gi|188026419|ref|ZP_02962021.2| hypothetical protein PROSTU_04109 [Providencia stuartii ATCC 25827]
gi|188020017|gb|EDU58057.1| ribonuclease Z [Providencia stuartii ATCC 25827]
Length = 309
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P T++ P +K+ VE + + S + L+
Sbjct: 64 IFITHLHGDHIFGLPGLLCSRSMGGSTDPLTLYGPKGLKQYVETVLTLSSSY--MTYPLE 121
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
++ ++ G+ ++ +++V + H + GY I
Sbjct: 122 MIEIEPGQLFD-DGELIVTAYPLDHRVECYGYRI 154
>gi|433456122|ref|ZP_20414179.1| ribonuclease Z [Arthrobacter crystallopoietes BAB-32]
gi|432196632|gb|ELK53070.1| ribonuclease Z [Arthrobacter crystallopoietes BAB-32]
Length = 298
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 25/194 (12%)
Query: 113 AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV 172
A Q + +TH H DH GLP ++ L ++ P P+ EDV + S G
Sbjct: 51 ATQITRICLTHVHGDHCYGLPGVLSRMALDGVQHPVYLHYPASGEDVVQALVSVASPG-- 108
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLK 226
+DL G + + VRP K H I + GY + LL K+L I
Sbjct: 109 ---IDLRLWPHGAGGPVAPGLEVRPLK--HRIETYGYRLAEPDGHTLLPKRLAAAGI--S 161
Query: 227 GKQIEKLKK----SGVEITDI-ILSP--EVAFTGDTTSEFMLNPRNADALRAKILITEAT 279
G I +L++ +GV + D+ + P AF D T++ AD +L++E+T
Sbjct: 162 GPDIGRLQREGSLAGVRLEDVSVYRPGQSFAFVMD-TAQCSGAEELADG--TDLLVSEST 218
Query: 280 FLDDEMSIEHAQQH 293
F DD+ S+ +H
Sbjct: 219 FNDDDASLAAQYRH 232
>gi|431751691|ref|ZP_19540378.1| ribonuclease Z [Enterococcus faecium E2620]
gi|430614985|gb|ELB51955.1| ribonuclease Z [Enterococcus faecium E2620]
Length = 313
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 36/238 (15%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R R + +FITH H DHI GLP ++SR P I+ P I+E ++ +
Sbjct: 48 RTTIRPRKIGKIFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGPKGIEEYIK----VS 103
Query: 167 RSLGNVELNLDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH 224
+ L+ L +++ ET + D V K +H I S GY + K + Q
Sbjct: 104 LGISQTRLSYPLKFIELNETDPIFTDQQFSVYAKKLNHGIDSFGYRVVEHDHKGELQVDR 163
Query: 225 LK------GKQIEKLKKS-GVEITD-------IILSPE-----VAFTGDT--TSEFMLNP 263
LK G KLK+ V++ D + P V GDT T ++
Sbjct: 164 LKELGIPAGPLYGKLKQGETVQLEDGRTINGKDFVGPNKKGRIVTILGDTRKTHNSVVLA 223
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI---RQAVLKLQSKVSAKVV 318
N+D IL+ E+TF DE + H H TH + ++ QA L + +SA+ +
Sbjct: 224 ENSD-----ILVHESTFNKDEARMAHNYFHSTTHQAAEVAKEAQAKRLLLTHISARYL 276
>gi|417308736|ref|ZP_12095577.1| Ribonuclease Z [Escherichia coli PCN033]
gi|338769364|gb|EGP24143.1| Ribonuclease Z [Escherichia coli PCN033]
Length = 305
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|294494977|ref|YP_003541470.1| RNAse Z [Methanohalophilus mahii DSM 5219]
gi|292665976|gb|ADE35825.1| RNAse Z [Methanohalophilus mahii DSM 5219]
Length = 312
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 41/230 (17%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155
FD G R T + + +FI+H H DH+ G+P + + + P P
Sbjct: 42 FDCGEGTQQQMMRARTGMMSLSSIFISHFHADHVLGIPGLLQTLSFHGRDTPLTIYGPVW 101
Query: 156 KEDVEKLFEIHRSLGNVELNLDL--VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY- 212
E KL + LG LN ++ V L+ G+ + R VV + H +PS Y +
Sbjct: 102 VEQFVKLVSL---LGYCRLNFEVKAVPLEAGDVVQ-REGYVVNAIASEHSVPSLAYALVE 157
Query: 213 ------LLRKKLKKQYIHLKGKQIEKLKKS-GVEITDIILSP-----------EVAFTGD 254
R++ ++ + + G +L+K VE+ I+ P ++ +TGD
Sbjct: 158 NERPGKFDRRRAEEMGVPV-GPLYSRLQKGESVEVNGRIIHPNEVIGPSRRGRKLIYTGD 216
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
T + +NAD +LI + T ++ H + + D+
Sbjct: 217 TRPCEAILEASKNAD-----VLIHDGTLAQEKADWARESLHSTANEAADV 261
>gi|375135382|ref|YP_004996032.1| ribonuclease Z [Acinetobacter calcoaceticus PHEA-2]
gi|325122827|gb|ADY82350.1| ribonuclease Z [Acinetobacter calcoaceticus PHEA-2]
Length = 318
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 31/190 (16%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ F+I L ++
Sbjct: 54 QNLVAICITHVHGDHCYGLVGLLASAGMNARTKPLIVIAP---KEIQQWFKITAQLTDLH 110
Query: 174 LNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL--- 225
L + +DV E ++ +++ ++ H +PS + IY+ +KK+ Q +
Sbjct: 111 LPYSIKFIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGV 170
Query: 226 -KGKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-A 271
KG LK+ VE IL + GD +L ADA + A
Sbjct: 171 PKGDIWGHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKNA 226
Query: 272 KILITEATFL 281
++LI EAT+L
Sbjct: 227 QLLIHEATYL 236
>gi|432398096|ref|ZP_19640877.1| ribonuclease Z [Escherichia coli KTE25]
gi|432407324|ref|ZP_19650033.1| ribonuclease Z [Escherichia coli KTE28]
gi|432723720|ref|ZP_19958640.1| ribonuclease Z [Escherichia coli KTE17]
gi|432728307|ref|ZP_19963186.1| ribonuclease Z [Escherichia coli KTE18]
gi|432742001|ref|ZP_19976720.1| ribonuclease Z [Escherichia coli KTE23]
gi|432991308|ref|ZP_20179972.1| ribonuclease Z [Escherichia coli KTE217]
gi|433111519|ref|ZP_20297384.1| ribonuclease Z [Escherichia coli KTE150]
gi|430916200|gb|ELC37278.1| ribonuclease Z [Escherichia coli KTE25]
gi|430930083|gb|ELC50592.1| ribonuclease Z [Escherichia coli KTE28]
gi|431266274|gb|ELF57836.1| ribonuclease Z [Escherichia coli KTE17]
gi|431273996|gb|ELF65070.1| ribonuclease Z [Escherichia coli KTE18]
gi|431283692|gb|ELF74551.1| ribonuclease Z [Escherichia coli KTE23]
gi|431495390|gb|ELH74976.1| ribonuclease Z [Escherichia coli KTE217]
gi|431628823|gb|ELI97199.1| ribonuclease Z [Escherichia coli KTE150]
Length = 305
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEISTGEIFDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|345019719|ref|ZP_08783332.1| ribonuclease Z [Ornithinibacillus scapharcae TW25]
Length = 307
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 28/201 (13%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI GLP ++SR + TIF P IKE V+ + S ++
Sbjct: 57 NKIFITHMHGDHIFGLPGLLSSRSFQGGEDELTIFGPKGIKEFVDTSLTL--SGTHITYP 114
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKG-------- 227
L V ++ G+ +E V K H +PS G+ I K + Q LK
Sbjct: 115 LTFVEIEEGKIFE-DEQFSVYCKKLEHGVPSYGFRIEEKNKPGELQVDQLKAFGIPPGPI 173
Query: 228 -KQIEKLK----KSGVEIT--DII----LSPEVAFTGDTTSEFMLNPRNADALRA-KILI 275
+QI++ + + G ++ D I + +A GDT S RN + + +L+
Sbjct: 174 YRQIKENEVVTLEDGRKLNRKDFIGPDKIGRHIAILGDTRS----THRNHEFVNGVDVLV 229
Query: 276 TEATFLDDEMSIEHAQQHGHT 296
EATF +++++ H T
Sbjct: 230 HEATFDKEKVALAEDYYHSTT 250
>gi|416343827|ref|ZP_11677727.1| Ribonuclease Z [Escherichia coli EC4100B]
gi|320199859|gb|EFW74448.1| Ribonuclease Z [Escherichia coli EC4100B]
Length = 311
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + VGE + +R V + H + GY I
Sbjct: 124 IVEIGVGEILDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|331647927|ref|ZP_08349019.1| ribonuclease Z [Escherichia coli M605]
gi|386619890|ref|YP_006139470.1| Ribonuclease Z [Escherichia coli NA114]
gi|387830202|ref|YP_003350139.1| hypothetical protein ECSF_2149 [Escherichia coli SE15]
gi|417662879|ref|ZP_12312460.1| ribonuclease Z [Escherichia coli AA86]
gi|432422617|ref|ZP_19665162.1| ribonuclease Z [Escherichia coli KTE178]
gi|432500755|ref|ZP_19742512.1| ribonuclease Z [Escherichia coli KTE216]
gi|432559519|ref|ZP_19796188.1| ribonuclease Z [Escherichia coli KTE49]
gi|432695130|ref|ZP_19930329.1| ribonuclease Z [Escherichia coli KTE162]
gi|432711322|ref|ZP_19946382.1| ribonuclease Z [Escherichia coli KTE6]
gi|432919732|ref|ZP_20123846.1| ribonuclease Z [Escherichia coli KTE173]
gi|432927635|ref|ZP_20129064.1| ribonuclease Z [Escherichia coli KTE175]
gi|432981697|ref|ZP_20170472.1| ribonuclease Z [Escherichia coli KTE211]
gi|433097139|ref|ZP_20283323.1| ribonuclease Z [Escherichia coli KTE139]
gi|433106561|ref|ZP_20292536.1| ribonuclease Z [Escherichia coli KTE148]
gi|281179359|dbj|BAI55689.1| conserved hypothetical protein [Escherichia coli SE15]
gi|330912097|gb|EGH40607.1| ribonuclease Z [Escherichia coli AA86]
gi|331043651|gb|EGI15789.1| ribonuclease Z [Escherichia coli M605]
gi|333970391|gb|AEG37196.1| Ribonuclease Z [Escherichia coli NA114]
gi|430944229|gb|ELC64328.1| ribonuclease Z [Escherichia coli KTE178]
gi|431028332|gb|ELD41376.1| ribonuclease Z [Escherichia coli KTE216]
gi|431090739|gb|ELD96490.1| ribonuclease Z [Escherichia coli KTE49]
gi|431233712|gb|ELF29299.1| ribonuclease Z [Escherichia coli KTE162]
gi|431249002|gb|ELF43177.1| ribonuclease Z [Escherichia coli KTE6]
gi|431443776|gb|ELH24802.1| ribonuclease Z [Escherichia coli KTE173]
gi|431444158|gb|ELH25182.1| ribonuclease Z [Escherichia coli KTE175]
gi|431491006|gb|ELH70613.1| ribonuclease Z [Escherichia coli KTE211]
gi|431615487|gb|ELI84616.1| ribonuclease Z [Escherichia coli KTE139]
gi|431627268|gb|ELI95679.1| ribonuclease Z [Escherichia coli KTE148]
Length = 305
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEISTGEIFDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|227879077|ref|ZP_03996966.1| ribonuclease Z [Lactobacillus crispatus JV-V01]
gi|256843066|ref|ZP_05548554.1| ribonuclease Z [Lactobacillus crispatus 125-2-CHN]
gi|256850282|ref|ZP_05555711.1| ribonuclease Z [Lactobacillus crispatus MV-1A-US]
gi|293381292|ref|ZP_06627295.1| ribonuclease Z [Lactobacillus crispatus 214-1]
gi|312977251|ref|ZP_07788999.1| ribonuclease Z [Lactobacillus crispatus CTV-05]
gi|423318856|ref|ZP_17296733.1| ribonuclease Z [Lactobacillus crispatus FB049-03]
gi|423321567|ref|ZP_17299438.1| ribonuclease Z [Lactobacillus crispatus FB077-07]
gi|227861318|gb|EEJ68948.1| ribonuclease Z [Lactobacillus crispatus JV-V01]
gi|256614486|gb|EEU19687.1| ribonuclease Z [Lactobacillus crispatus 125-2-CHN]
gi|256712919|gb|EEU27911.1| ribonuclease Z [Lactobacillus crispatus MV-1A-US]
gi|290922108|gb|EFD99107.1| ribonuclease Z [Lactobacillus crispatus 214-1]
gi|310895682|gb|EFQ44748.1| ribonuclease Z [Lactobacillus crispatus CTV-05]
gi|405591842|gb|EKB65306.1| ribonuclease Z [Lactobacillus crispatus FB049-03]
gi|405594256|gb|EKB67673.1| ribonuclease Z [Lactobacillus crispatus FB077-07]
Length = 312
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 25/195 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++R ++ P TI+ P I+E V ++ R+ +++
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPITIYGPSGIEEFVRTALKVSRT----KISYS 114
Query: 178 LVALDVGETYEMRNDIVVRPF--KTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGK 228
+ +++ ++ + D R + + H IPS G+ + LL KL QY G
Sbjct: 115 IRFVELAKSGLICEDKGFRVYTEQLDHRIPSFGFRVVEASHPGELLIDKL-AQYNVPNGP 173
Query: 229 QIEKLKKS-GVEITDIILSPEVAFTGDTT----SEFMLNPRNADALR-----AKILITEA 278
+ KLK V + D + F G T + + R+ ++ A +L+ E+
Sbjct: 174 LLGKLKNGEKVTLADGTVLDGKNFLGPTKPGRIVTVIYDTRSTPSIARLAKDADVLVHES 233
Query: 279 TFLDDEMSIEHAQQH 293
TF DE + H H
Sbjct: 234 TFAGDEQKLAHDYYH 248
>gi|161507441|ref|YP_001577395.1| ribonuclease Z [Lactobacillus helveticus DPC 4571]
gi|172048277|sp|A8YV16.1|RNZ_LACH4 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|160348430|gb|ABX27104.1| ribonuclease Z [Lactobacillus helveticus DPC 4571]
Length = 312
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 94/226 (41%), Gaps = 49/226 (21%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP +++R ++ P TI+ PP
Sbjct: 36 FDVGEATQHQILRTNIRLRKVTKIFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRS-----LGNVELNL-DLVALDVG-ETYEMRNDIVVRPFKTHHVIPSQ 207
I++ V+ ++ R+ + VEL L+ D G Y R D H IPS
Sbjct: 96 IEQFVKVSLKVSRTKVSYPIKFVELTKPGLICEDKGFRVYTDRLD---------HRIPSF 146
Query: 208 GYVIY-------LLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPEVAFTG------ 253
G+ + LL KL K I G + +LK+ V + D + F G
Sbjct: 147 GFRVVEDSHPGELLIDKLAKYNIP-NGPLLGQLKRGDQVTLADGTVLNGKDFLGAEKPGR 205
Query: 254 ------DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQH 293
DT S + D A +L+ E+TF DE + H H
Sbjct: 206 IVTIIYDTRSTPSIARLAKD---ADVLVHESTFAGDEAKMAHNYYH 248
>gi|386742982|ref|YP_006216161.1| binuclear zinc phosphodiesterase [Providencia stuartii MRSN 2154]
gi|384479675|gb|AFH93470.1| binuclear zinc phosphodiesterase [Providencia stuartii MRSN 2154]
Length = 304
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 34/201 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P T++ P +K+ VE + + S + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGSTDPLTLYGPKGLKQYVETVLTLSSSY--MTYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
++ ++ G+ ++ +++V + H + GY I L KL + I +G +
Sbjct: 117 MIEIEPGQLFD-DGELIVTAYPLDHRVECYGYRIEEHPKRGSLDVDKLAQDNIP-RGPWM 174
Query: 231 EKLKKS---------GVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILI 275
+ LK V D + P+ +A GDT T + + +NAD +++
Sbjct: 175 QALKAGETIMLADGRRVNGADYLGEPKPGKVIAIFGDTKPTEQALFLAKNAD-----VMV 229
Query: 276 TEATFLDDEMSIEHAQQHGHT 296
E T + E A GH+
Sbjct: 230 HETTL--ENAYHEKANDRGHS 248
>gi|90962068|ref|YP_535984.1| ribonuclease Z [Lactobacillus salivarius UCC118]
gi|122448828|sp|Q1WT50.1|RNZ_LACS1 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|90821262|gb|ABD99901.1| Ribonuclease Z [Lactobacillus salivarius UCC118]
Length = 317
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 102/253 (40%), Gaps = 49/253 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR G + P TI+ P I + V ++ ++ + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
V L+ + V +K H I GY I L +KL++
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRIEEKDYPGELQVEKLREAKAPSGPI 176
Query: 222 YIHLKGKQIEKLKKS-GVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKIL 274
Y LK ++ L+ ++ D I + V GDT T L ++AD +L
Sbjct: 177 YGRLKAGEVVTLEDGRTIDGKDFIGKAKKGRIVTILGDTRQTPNLKLLAKDAD-----VL 231
Query: 275 ITEATFLDDEMSIEHAQQHGH------------------THLSEDIRQAVLKLQSKVSAK 316
+ E+TF E + H TH+S ++K+ K + K
Sbjct: 232 VHESTFGKGEGKLARNYHHSTCVQAATLAKEVGVKQLLLTHISARYVGKMVKVLEKEAKK 291
Query: 317 VVPLTEGFKSVYT 329
V P T+ K T
Sbjct: 292 VFPNTKVVKDFDT 304
>gi|306490893|gb|ADM95011.1| metal-dependent hydrolase [uncultured candidate division JS1
bacterium]
Length = 315
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 42/226 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP +A+RGL +K IF P + ++ F+ S ++
Sbjct: 59 IFISHLHGDHLFGLPGLLATRGLLGIKKSINIFGPVGLDNYLKNNFD--YSCTHIPYFYH 116
Query: 178 LVALDVGETYEMRN------DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK----- 226
+ A++ E+Y +N +I + +H + S GY I + K +K+ + K
Sbjct: 117 IYAIE-KESYLSKNLLWENGNISIYCALLNHYLDSFGYAI--IEKNIKRNILVEKLVKMG 173
Query: 227 ---GKQIEKLKKSGV-------------EITDIILSPEVAFTGDTT--SEFMLNPRNADA 268
G +K K++G+ I + I ++ + GDTT S ++ + AD
Sbjct: 174 IPPGPIYKKFKENGIINLNDGTVLKAVDFIKESISIKKLCYCGDTTFSSNAVILAQGAD- 232
Query: 269 LRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS 314
+LI E TF + A Q H+ + E I+ A L K++
Sbjct: 233 ----LLIHEGTFCSKRK--QEANQSYHSTIEEAIKVARLARVKKLA 272
>gi|218690432|ref|YP_002398644.1| ribonuclease Z [Escherichia coli ED1a]
gi|419701104|ref|ZP_14228706.1| ribonuclease Z [Escherichia coli SCI-07]
gi|422382142|ref|ZP_16462303.1| ribonuclease Z [Escherichia coli MS 57-2]
gi|432441765|ref|ZP_19684105.1| ribonuclease Z [Escherichia coli KTE189]
gi|432446881|ref|ZP_19689180.1| ribonuclease Z [Escherichia coli KTE191]
gi|432733004|ref|ZP_19967837.1| ribonuclease Z [Escherichia coli KTE45]
gi|432760090|ref|ZP_19994584.1| ribonuclease Z [Escherichia coli KTE46]
gi|433014534|ref|ZP_20202882.1| ribonuclease Z [Escherichia coli KTE104]
gi|433024154|ref|ZP_20212141.1| ribonuclease Z [Escherichia coli KTE106]
gi|433323743|ref|ZP_20401074.1| ribonuclease Z [Escherichia coli J96]
gi|254808633|sp|B7MXV1.1|RBN_ECO81 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|218427996|emb|CAR08917.2| binuclear zinc phosphodiesterase [Escherichia coli ED1a]
gi|324006621|gb|EGB75840.1| ribonuclease Z [Escherichia coli MS 57-2]
gi|380347850|gb|EIA36136.1| ribonuclease Z [Escherichia coli SCI-07]
gi|430966219|gb|ELC83627.1| ribonuclease Z [Escherichia coli KTE189]
gi|430973154|gb|ELC90122.1| ribonuclease Z [Escherichia coli KTE191]
gi|431276191|gb|ELF67218.1| ribonuclease Z [Escherichia coli KTE45]
gi|431307744|gb|ELF96034.1| ribonuclease Z [Escherichia coli KTE46]
gi|431530632|gb|ELI07311.1| ribonuclease Z [Escherichia coli KTE104]
gi|431535226|gb|ELI11607.1| ribonuclease Z [Escherichia coli KTE106]
gi|432347841|gb|ELL42298.1| ribonuclease Z [Escherichia coli J96]
Length = 305
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|26248658|ref|NP_754698.1| ribonuclease Z [Escherichia coli CFT073]
gi|91211564|ref|YP_541550.1| ribonuclease Z [Escherichia coli UTI89]
gi|117624461|ref|YP_853374.1| ribonuclease Z [Escherichia coli APEC O1]
gi|218559185|ref|YP_002392098.1| ribonuclease Z [Escherichia coli S88]
gi|227887328|ref|ZP_04005133.1| ribonuclease Z [Escherichia coli 83972]
gi|237704746|ref|ZP_04535227.1| ribonuclease Z [Escherichia sp. 3_2_53FAA]
gi|300983331|ref|ZP_07176545.1| ribonuclease Z [Escherichia coli MS 45-1]
gi|301049024|ref|ZP_07196010.1| ribonuclease Z [Escherichia coli MS 185-1]
gi|386600148|ref|YP_006101654.1| ribonuclease Z [Escherichia coli IHE3034]
gi|386603708|ref|YP_006110008.1| ribonuclease Z [Escherichia coli UM146]
gi|386630067|ref|YP_006149787.1| ribonuclease Z [Escherichia coli str. 'clone D i2']
gi|386634987|ref|YP_006154706.1| ribonuclease Z [Escherichia coli str. 'clone D i14']
gi|386639842|ref|YP_006106640.1| ribonuclease Z [Escherichia coli ABU 83972]
gi|417085535|ref|ZP_11952963.1| ribonuclease Z [Escherichia coli cloneA_i1]
gi|417286660|ref|ZP_12073949.1| ribonuclease BN [Escherichia coli TW07793]
gi|419947206|ref|ZP_14463563.1| ribonuclease Z [Escherichia coli HM605]
gi|422360289|ref|ZP_16440923.1| ribonuclease Z [Escherichia coli MS 110-3]
gi|422365072|ref|ZP_16445576.1| ribonuclease Z [Escherichia coli MS 153-1]
gi|422749549|ref|ZP_16803461.1| ribonuclease BN [Escherichia coli H252]
gi|422755694|ref|ZP_16809518.1| ribonuclease BN [Escherichia coli H263]
gi|422837677|ref|ZP_16885650.1| ribonuclease Z [Escherichia coli H397]
gi|432358613|ref|ZP_19601839.1| ribonuclease Z [Escherichia coli KTE4]
gi|432363347|ref|ZP_19606514.1| ribonuclease Z [Escherichia coli KTE5]
gi|432412481|ref|ZP_19655144.1| ribonuclease Z [Escherichia coli KTE39]
gi|432432557|ref|ZP_19674986.1| ribonuclease Z [Escherichia coli KTE187]
gi|432436994|ref|ZP_19679382.1| ribonuclease Z [Escherichia coli KTE188]
gi|432457376|ref|ZP_19699560.1| ribonuclease Z [Escherichia coli KTE201]
gi|432496377|ref|ZP_19738173.1| ribonuclease Z [Escherichia coli KTE214]
gi|432505115|ref|ZP_19746839.1| ribonuclease Z [Escherichia coli KTE220]
gi|432524466|ref|ZP_19761594.1| ribonuclease Z [Escherichia coli KTE230]
gi|432569348|ref|ZP_19805860.1| ribonuclease Z [Escherichia coli KTE53]
gi|432574348|ref|ZP_19810828.1| ribonuclease Z [Escherichia coli KTE55]
gi|432588596|ref|ZP_19824952.1| ribonuclease Z [Escherichia coli KTE58]
gi|432593534|ref|ZP_19829851.1| ribonuclease Z [Escherichia coli KTE60]
gi|432598255|ref|ZP_19834531.1| ribonuclease Z [Escherichia coli KTE62]
gi|432608155|ref|ZP_19844340.1| ribonuclease Z [Escherichia coli KTE67]
gi|432651841|ref|ZP_19887595.1| ribonuclease Z [Escherichia coli KTE87]
gi|432755083|ref|ZP_19989633.1| ribonuclease Z [Escherichia coli KTE22]
gi|432779208|ref|ZP_20013451.1| ribonuclease Z [Escherichia coli KTE59]
gi|432784234|ref|ZP_20018413.1| ribonuclease Z [Escherichia coli KTE63]
gi|432788155|ref|ZP_20022287.1| ribonuclease Z [Escherichia coli KTE65]
gi|432821604|ref|ZP_20055296.1| ribonuclease Z [Escherichia coli KTE118]
gi|432827736|ref|ZP_20061388.1| ribonuclease Z [Escherichia coli KTE123]
gi|432845239|ref|ZP_20078072.1| ribonuclease Z [Escherichia coli KTE141]
gi|432974416|ref|ZP_20163255.1| ribonuclease Z [Escherichia coli KTE209]
gi|432996004|ref|ZP_20184609.1| ribonuclease Z [Escherichia coli KTE218]
gi|433000591|ref|ZP_20189116.1| ribonuclease Z [Escherichia coli KTE223]
gi|433005726|ref|ZP_20194155.1| ribonuclease Z [Escherichia coli KTE227]
gi|433008309|ref|ZP_20196726.1| ribonuclease Z [Escherichia coli KTE229]
gi|433058787|ref|ZP_20245833.1| ribonuclease Z [Escherichia coli KTE124]
gi|433087948|ref|ZP_20274319.1| ribonuclease Z [Escherichia coli KTE137]
gi|433116202|ref|ZP_20301993.1| ribonuclease Z [Escherichia coli KTE153]
gi|433125870|ref|ZP_20311429.1| ribonuclease Z [Escherichia coli KTE160]
gi|433139939|ref|ZP_20325195.1| ribonuclease Z [Escherichia coli KTE167]
gi|433149856|ref|ZP_20334877.1| ribonuclease Z [Escherichia coli KTE174]
gi|433154390|ref|ZP_20339332.1| ribonuclease Z [Escherichia coli KTE176]
gi|433164143|ref|ZP_20348881.1| ribonuclease Z [Escherichia coli KTE179]
gi|433169248|ref|ZP_20353876.1| ribonuclease Z [Escherichia coli KTE180]
gi|433198904|ref|ZP_20382806.1| ribonuclease Z [Escherichia coli KTE94]
gi|433208443|ref|ZP_20392117.1| ribonuclease Z [Escherichia coli KTE97]
gi|433213179|ref|ZP_20396769.1| ribonuclease Z [Escherichia coli KTE99]
gi|442608047|ref|ZP_21022807.1| Ribonuclease Z [Escherichia coli Nissle 1917]
gi|41017561|sp|Q8FFK8.1|RBN_ECOL6 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|122423124|sp|Q1R9E5.1|RBN_ECOUT RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|166991101|sp|A1ADC0.1|RBN_ECOK1 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|254808630|sp|B7MG36.1|RBN_ECO45 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|26109063|gb|AAN81266.1|AE016763_225 Protein elaC [Escherichia coli CFT073]
gi|91073138|gb|ABE08019.1| protein ElaC [Escherichia coli UTI89]
gi|115513585|gb|ABJ01660.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|218365954|emb|CAR03698.1| binuclear zinc phosphodiesterase [Escherichia coli S88]
gi|226901112|gb|EEH87371.1| ribonuclease Z [Escherichia sp. 3_2_53FAA]
gi|227835678|gb|EEJ46144.1| ribonuclease Z [Escherichia coli 83972]
gi|294491729|gb|ADE90485.1| ribonuclease Z [Escherichia coli IHE3034]
gi|300299172|gb|EFJ55557.1| ribonuclease Z [Escherichia coli MS 185-1]
gi|300408589|gb|EFJ92127.1| ribonuclease Z [Escherichia coli MS 45-1]
gi|307554334|gb|ADN47109.1| ribonuclease Z [Escherichia coli ABU 83972]
gi|307626192|gb|ADN70496.1| ribonuclease Z [Escherichia coli UM146]
gi|315285864|gb|EFU45302.1| ribonuclease Z [Escherichia coli MS 110-3]
gi|315292193|gb|EFU51545.1| ribonuclease Z [Escherichia coli MS 153-1]
gi|323952064|gb|EGB47938.1| ribonuclease BN [Escherichia coli H252]
gi|323956038|gb|EGB51791.1| ribonuclease BN [Escherichia coli H263]
gi|355351307|gb|EHG00499.1| ribonuclease Z [Escherichia coli cloneA_i1]
gi|355420966|gb|AER85163.1| ribonuclease Z [Escherichia coli str. 'clone D i2']
gi|355425886|gb|AER90082.1| ribonuclease Z [Escherichia coli str. 'clone D i14']
gi|371610586|gb|EHN99114.1| ribonuclease Z [Escherichia coli H397]
gi|386250119|gb|EII96288.1| ribonuclease BN [Escherichia coli TW07793]
gi|388411125|gb|EIL71311.1| ribonuclease Z [Escherichia coli HM605]
gi|430877268|gb|ELC00724.1| ribonuclease Z [Escherichia coli KTE4]
gi|430886566|gb|ELC09421.1| ribonuclease Z [Escherichia coli KTE5]
gi|430934888|gb|ELC55235.1| ribonuclease Z [Escherichia coli KTE39]
gi|430952982|gb|ELC71896.1| ribonuclease Z [Escherichia coli KTE187]
gi|430962325|gb|ELC80182.1| ribonuclease Z [Escherichia coli KTE188]
gi|430982110|gb|ELC98829.1| ribonuclease Z [Escherichia coli KTE201]
gi|431023635|gb|ELD36830.1| ribonuclease Z [Escherichia coli KTE214]
gi|431038209|gb|ELD49178.1| ribonuclease Z [Escherichia coli KTE220]
gi|431051582|gb|ELD61245.1| ribonuclease Z [Escherichia coli KTE230]
gi|431100062|gb|ELE05078.1| ribonuclease Z [Escherichia coli KTE53]
gi|431107946|gb|ELE12110.1| ribonuclease Z [Escherichia coli KTE55]
gi|431120929|gb|ELE23927.1| ribonuclease Z [Escherichia coli KTE58]
gi|431127634|gb|ELE29934.1| ribonuclease Z [Escherichia coli KTE60]
gi|431131122|gb|ELE33205.1| ribonuclease Z [Escherichia coli KTE62]
gi|431138041|gb|ELE39881.1| ribonuclease Z [Escherichia coli KTE67]
gi|431190288|gb|ELE89688.1| ribonuclease Z [Escherichia coli KTE87]
gi|431302292|gb|ELF91480.1| ribonuclease Z [Escherichia coli KTE22]
gi|431327361|gb|ELG14706.1| ribonuclease Z [Escherichia coli KTE59]
gi|431328657|gb|ELG15961.1| ribonuclease Z [Escherichia coli KTE63]
gi|431337872|gb|ELG24960.1| ribonuclease Z [Escherichia coli KTE65]
gi|431368451|gb|ELG54919.1| ribonuclease Z [Escherichia coli KTE118]
gi|431372985|gb|ELG58647.1| ribonuclease Z [Escherichia coli KTE123]
gi|431394661|gb|ELG78194.1| ribonuclease Z [Escherichia coli KTE141]
gi|431489277|gb|ELH68905.1| ribonuclease Z [Escherichia coli KTE209]
gi|431505564|gb|ELH84170.1| ribonuclease Z [Escherichia coli KTE218]
gi|431508577|gb|ELH86849.1| ribonuclease Z [Escherichia coli KTE223]
gi|431514713|gb|ELH92554.1| ribonuclease Z [Escherichia coli KTE227]
gi|431523639|gb|ELI00776.1| ribonuclease Z [Escherichia coli KTE229]
gi|431569042|gb|ELI42004.1| ribonuclease Z [Escherichia coli KTE124]
gi|431604459|gb|ELI73868.1| ribonuclease Z [Escherichia coli KTE137]
gi|431633964|gb|ELJ02226.1| ribonuclease Z [Escherichia coli KTE153]
gi|431645104|gb|ELJ12757.1| ribonuclease Z [Escherichia coli KTE160]
gi|431660252|gb|ELJ27140.1| ribonuclease Z [Escherichia coli KTE167]
gi|431670525|gb|ELJ36878.1| ribonuclease Z [Escherichia coli KTE174]
gi|431673933|gb|ELJ40121.1| ribonuclease Z [Escherichia coli KTE176]
gi|431687448|gb|ELJ52999.1| ribonuclease Z [Escherichia coli KTE179]
gi|431688100|gb|ELJ53641.1| ribonuclease Z [Escherichia coli KTE180]
gi|431721608|gb|ELJ85602.1| ribonuclease Z [Escherichia coli KTE94]
gi|431729728|gb|ELJ93347.1| ribonuclease Z [Escherichia coli KTE97]
gi|431734204|gb|ELJ97605.1| ribonuclease Z [Escherichia coli KTE99]
gi|441710652|emb|CCQ08784.1| Ribonuclease Z [Escherichia coli Nissle 1917]
Length = 305
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|431430744|ref|ZP_19512884.1| ribonuclease Z [Enterococcus faecium E1630]
gi|431759059|ref|ZP_19547676.1| ribonuclease Z [Enterococcus faecium E3346]
gi|430587768|gb|ELB25985.1| ribonuclease Z [Enterococcus faecium E1630]
gi|430626684|gb|ELB63250.1| ribonuclease Z [Enterococcus faecium E3346]
Length = 313
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 33/219 (15%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R R + +FITH H DHI GLP ++SR + P I+ P I+E ++ +
Sbjct: 48 RTTIRPRKIGKIFITHLHGDHIFGLPGLISSRSFQSGDTPLEIYGPKGIEEYIK----VS 103
Query: 167 RSLGNVELNLDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH 224
+ L+ L +++ ET + D V K +H I S GY + K + Q
Sbjct: 104 LGISQTRLSYPLKFIELNETAPIFTDQQFSVYTKKLNHGIDSFGYRVVEHDHKGELQVDR 163
Query: 225 LK------GKQIEKLKKS-GVEITD-------IILSPE-----VAFTGDT--TSEFMLNP 263
LK G KLK+ +++ D + P+ V GDT T ++
Sbjct: 164 LKELGIPAGPLYGKLKQGETIQLEDGRTINGKDFVGPDKKGRIVTILGDTRKTHNSVVLA 223
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
N+D IL+ E+TF DE + H H TH + ++
Sbjct: 224 ENSD-----ILVHESTFNKDEARMAHNYFHSTTHQAAEV 257
>gi|220925940|ref|YP_002501242.1| beta-lactamase domain-containing protein [Methylobacterium nodulans
ORS 2060]
gi|219950547|gb|ACL60939.1| beta-lactamase domain protein [Methylobacterium nodulans ORS 2060]
Length = 243
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 113 AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLK--PPTIFVPPSIKEDVEKLFE-IHRSL 169
AIQ VF+TH H DH GGLP + L + + P TI P +++E + L E +
Sbjct: 52 AIQT--VFLTHLHGDHFGGLPFLILDAQLVSRRTAPLTIVGPSTLRERLAALMEAMFPGS 109
Query: 170 GNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKG- 227
VE DL +++G D + V F H PS G Y LR + + + G
Sbjct: 110 STVERRFDLRLIELGPEMPTEVDGVTVTAFPVRH--PS-GAPSYALRLACEGRTLCYTGD 166
Query: 228 -KQIEKLKKSGVEITDII 244
+ ++ L +G E+ +I
Sbjct: 167 TEWVDALYPAGREVDLLI 184
>gi|257387128|ref|YP_003176901.1| ribonuclease Z [Halomicrobium mukohataei DSM 12286]
gi|257169435|gb|ACV47194.1| ribonuclease Z [Halomicrobium mukohataei DSM 12286]
Length = 306
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 99/248 (39%), Gaps = 39/248 (15%)
Query: 101 KCAFDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVP 152
K FD G R + + + VF+TH H DH+ G+P + + + + P I P
Sbjct: 30 KLLFDCGEGTQRQMMRFGTGFAVDHVFVTHTHGDHVLGIPGLLQTFDFNDREEPLAIHAP 89
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI- 211
+ +E L + + + + V+ G+T + VR +T H S GY +
Sbjct: 90 AGTRGTIEDLVSVTGDTPSFPVRITQVS--AGDTVLDGDGYEVRAIRTQHRCQSVGYAVV 147
Query: 212 ------YLLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPE-----------VAFTG 253
R+K +++ G + KL + VE + PE + +TG
Sbjct: 148 EDDRKGRFDREKAEEELGIEPGPKYSKLHRGEPVEHEGRTIQPEAVVGPDRPGRTLVYTG 207
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
DT + + D A +L+ +ATF DD E A++ H E ++ +
Sbjct: 208 DTRPTDSVVEASED---ADLLVHDATFADD--WAERARKTAHATGRE-----AAEVAQEA 257
Query: 314 SAKVVPLT 321
AK + LT
Sbjct: 258 GAKRLALT 265
>gi|215487486|ref|YP_002329917.1| ribonuclease Z [Escherichia coli O127:H6 str. E2348/69]
gi|415840545|ref|ZP_11521973.1| ribonuclease Z [Escherichia coli RN587/1]
gi|416335457|ref|ZP_11672150.1| Ribonuclease Z [Escherichia coli WV_060327]
gi|417281262|ref|ZP_12068562.1| ribonuclease BN [Escherichia coli 3003]
gi|425278569|ref|ZP_18669815.1| ribonuclease Z [Escherichia coli ARS4.2123]
gi|432466429|ref|ZP_19708517.1| ribonuclease Z [Escherichia coli KTE205]
gi|433073469|ref|ZP_20260123.1| ribonuclease Z [Escherichia coli KTE129]
gi|433120868|ref|ZP_20306540.1| ribonuclease Z [Escherichia coli KTE157]
gi|433183941|ref|ZP_20368191.1| ribonuclease Z [Escherichia coli KTE85]
gi|254808629|sp|B7UFT1.1|RBN_ECO27 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|215265558|emb|CAS09961.1| binuclear zinc phosphodiesterase [Escherichia coli O127:H6 str.
E2348/69]
gi|320196140|gb|EFW70764.1| Ribonuclease Z [Escherichia coli WV_060327]
gi|323188002|gb|EFZ73297.1| ribonuclease Z [Escherichia coli RN587/1]
gi|386245591|gb|EII87321.1| ribonuclease BN [Escherichia coli 3003]
gi|408202131|gb|EKI27265.1| ribonuclease Z [Escherichia coli ARS4.2123]
gi|430993235|gb|ELD09589.1| ribonuclease Z [Escherichia coli KTE205]
gi|431587743|gb|ELI59095.1| ribonuclease Z [Escherichia coli KTE129]
gi|431642469|gb|ELJ10192.1| ribonuclease Z [Escherichia coli KTE157]
gi|431706191|gb|ELJ70765.1| ribonuclease Z [Escherichia coli KTE85]
Length = 305
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|432554359|ref|ZP_19791082.1| ribonuclease Z [Escherichia coli KTE47]
gi|431084164|gb|ELD90335.1| ribonuclease Z [Escherichia coli KTE47]
Length = 305
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|432802488|ref|ZP_20036467.1| ribonuclease Z [Escherichia coli KTE84]
gi|431348277|gb|ELG35135.1| ribonuclease Z [Escherichia coli KTE84]
Length = 305
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|425301133|ref|ZP_18691031.1| ribonuclease Z [Escherichia coli 07798]
gi|408213519|gb|EKI38004.1| ribonuclease Z [Escherichia coli 07798]
Length = 305
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|417138882|ref|ZP_11982409.1| putative ribonuclease Z [Escherichia coli 97.0259]
gi|386157527|gb|EIH13867.1| putative ribonuclease Z [Escherichia coli 97.0259]
Length = 242
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|422974439|ref|ZP_16976349.1| ribonuclease Z [Escherichia coli TA124]
gi|371595818|gb|EHN84665.1| ribonuclease Z [Escherichia coli TA124]
Length = 311
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S +
Sbjct: 64 NKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYP 121
Query: 176 LDLVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
L++V + GE + +R V + H + GY I
Sbjct: 122 LEIVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|385813956|ref|YP_005850349.1| Ribonuclease Z [Lactobacillus helveticus H10]
gi|323466675|gb|ADX70362.1| Ribonuclease Z [Lactobacillus helveticus H10]
Length = 312
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 47/225 (20%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP +++R ++ P TI+ PP
Sbjct: 36 FDVGEATQHQILRTNIRLRKVTKIFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRS-----LGNVELNL-DLVALDVG-ETYEMRNDIVVRPFKTHHVIPSQ 207
I++ V+ ++ R+ + VEL L+ D G Y R D H IPS
Sbjct: 96 IEQFVKVSLKVSRTKVSYPIKFVELTKPGLICEDKGFRVYTDRLD---------HRIPSF 146
Query: 208 GYVIY-------LLRKKLKKQYI-------HLK-GKQIEKLKKSGVEITDIILSPE---- 248
G+ + LL KL K I LK G+Q+ + + D + + +
Sbjct: 147 GFRVVEDSHPGELLIDKLAKYNIPNGPLLGQLKRGEQVTLADGTVLNGKDFLGAEKPGRI 206
Query: 249 VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQH 293
V DT S + D A +L+ E+TF DE + H H
Sbjct: 207 VTIIYDTRSTPSIARLAKD---ADVLVHESTFAGDEAKMAHNYYH 248
>gi|194017036|ref|ZP_03055649.1| ribonuclease Z [Bacillus pumilus ATCC 7061]
gi|194011642|gb|EDW21211.1| ribonuclease Z [Bacillus pumilus ATCC 7061]
Length = 309
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 26/206 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK V ++ ++ L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTIYGPKGIKAFVSAALSATQT--HLTYPLH 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK-------QYI 223
++ +D G +E + V + H IP+ GY + L + LK+ Y
Sbjct: 117 IIEIDEGIVFE-DDTFQVEARRVSHGIPAYGYRVVEKDVPGALKAEDLKEIGVKPGPLYQ 175
Query: 224 HLKGKQIEKLKKSG-VEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
LK + L+ ++ TD + P+ VAF+GDT + A A +L+ EA
Sbjct: 176 KLKNGETVTLEDGRIIDGTDYLEPPKKGRIVAFSGDTR---LCENITRLAKDADVLVHEA 232
Query: 279 TFLDDEMSIEHAQQHGHTHLSEDIRQ 304
TF ++ + + H T + Q
Sbjct: 233 TFGKEDADLAYNYYHSTTEQAAKTAQ 258
>gi|363896228|ref|ZP_09322782.1| ribonuclease Z [Oribacterium sp. ACB7]
gi|361961236|gb|EHL14454.1| ribonuclease Z [Oribacterium sp. ACB7]
Length = 301
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 28/204 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRG-LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ TH H DHI GLP + S G KP + P +K V+ L I L +L+
Sbjct: 57 ICFTHYHADHISGLPGMLLSMGNAERTKPVRLIGPKGLKRVVDGLRMIAPEL---PFSLE 113
Query: 178 LVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIYLLRK-KLKKQYIHLKGKQIEKLKK 235
V + GE +++++ V+ FK H IP GY + + RK K + +G + +
Sbjct: 114 YVEI-TGEVEKLQSESFVIEAFKVQHSIPCYGYRLSIPRKGKFSVERAEEQGIPLRCWNR 172
Query: 236 ----SGVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILITEAT 279
VE I +P+ V + DT PR ++ + A + I E
Sbjct: 173 LQHGEAVEWEGRIFTPDMVMGEARKGISVVYCTDTRP----VPRISEMAKGADLFICEGM 228
Query: 280 FLDDEMSIEHAQQHGHTHLSEDIR 303
+ +E +A++H H + E R
Sbjct: 229 Y-GEEDKAGNAKKHKHMTMEEAAR 251
>gi|260101648|ref|ZP_05751885.1| ribonuclease Z [Lactobacillus helveticus DSM 20075]
gi|417007582|ref|ZP_11945387.1| ribonuclease Z [Lactobacillus helveticus MTCC 5463]
gi|260084549|gb|EEW68669.1| ribonuclease Z [Lactobacillus helveticus DSM 20075]
gi|328467455|gb|EGF38530.1| ribonuclease Z [Lactobacillus helveticus MTCC 5463]
Length = 312
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 47/225 (20%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP +++R ++ P TI+ PP
Sbjct: 36 FDVGEATQHQILRTNIRLRKVTKIFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRS-----LGNVELNL-DLVALDVG-ETYEMRNDIVVRPFKTHHVIPSQ 207
I++ V+ ++ R+ + VEL L+ D G Y R D H IPS
Sbjct: 96 IEQFVKVSLKVSRTKVSYPIKFVELTKPGLICEDKGFRVYTDRLD---------HRIPSF 146
Query: 208 GYVIY-------LLRKKLKKQYI-------HLK-GKQIEKLKKSGVEITDIILSPE---- 248
G+ + LL KL K I LK G+Q+ + + D + + +
Sbjct: 147 GFRVVEDSHPGELLIDKLAKYNIPNGPLLGQLKRGEQVTLADGTVLNGKDFLGAEKPGRI 206
Query: 249 VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQH 293
V DT S + D A +L+ E+TF DE + H H
Sbjct: 207 VTIIYDTRSTPSIARLAKD---ADVLVHESTFAGDEAKMAHNYYH 248
>gi|403515157|ref|YP_006655977.1| ribonuclease Z [Lactobacillus helveticus R0052]
gi|403080595|gb|AFR22173.1| ribonuclease Z [Lactobacillus helveticus R0052]
Length = 312
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 47/225 (20%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP +++R ++ P TI+ PP
Sbjct: 36 FDVGEATQHQILRTNIRLRKVTKIFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRS-----LGNVELNL-DLVALDVG-ETYEMRNDIVVRPFKTHHVIPSQ 207
I++ V+ ++ R+ + VEL L+ D G Y R D H IPS
Sbjct: 96 IEQFVKVSLKVSRTKVSYPIKFVELTKPGLICEDKGFRVYTDRLD---------HRIPSF 146
Query: 208 GYVIY-------LLRKKLKKQYI-------HLK-GKQIEKLKKSGVEITDIILSPE---- 248
G+ + LL KL K I LK G+Q+ + + D + + +
Sbjct: 147 GFRVVEDSHPGELLIDKLAKYNIPNGPLLGQLKRGEQVTLADGTVLNGKDFLGAEKPGRI 206
Query: 249 VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQH 293
V DT S + D A +L+ E+TF DE + H H
Sbjct: 207 VTIIYDTRSTPSIARLAKD---ADVLVHESTFAGDEAKMAHNYYH 248
>gi|259910153|ref|YP_002650509.1| ribonuclease Z [Erwinia pyrifoliae Ep1/96]
gi|224965775|emb|CAX57307.1| Ribonuclease Z [Erwinia pyrifoliae Ep1/96]
Length = 304
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R P + + +FITH H DHI GLP + SR + ++P T++ P
Sbjct: 36 FDCGEGTQHQILRTPIKPGRIEKIFITHLHGDHIFGLPGLLTSRSMNGCVEPMTLYGPSG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
IK VE + S N L+++ + GE ++ + V + H + GY I
Sbjct: 96 IKTFVETSLSLSGSWLN--FPLEIIEISAGEVFQDAH-FRVTAYPLTHPVECYGYRI 149
>gi|325971176|ref|YP_004247367.1| ribonuclease Z [Sphaerochaeta globus str. Buddy]
gi|324026414|gb|ADY13173.1| Ribonuclease Z [Sphaerochaeta globus str. Buddy]
Length = 307
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + + S + +P TI+ P +KE ++ +R + ++ +N +
Sbjct: 58 IFISHMHADHVTGLPGILMLSSQVDRNEPLTIYGPARLKEYIDA----NRRILDMYINYE 113
Query: 178 LVALDVGETYEM--RNDIVVRPFKTHHVIPSQGYVI 211
+V + V E+ + +D + F HH P GYV+
Sbjct: 114 IV-VKVAESGVILETDDFTISAFPLHHTKPCVGYVM 148
>gi|410720670|ref|ZP_11360023.1| ribonuclease Z [Methanobacterium sp. Maddingley MBC34]
gi|410600381|gb|EKQ54909.1| ribonuclease Z [Methanobacterium sp. Maddingley MBC34]
Length = 303
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 38/221 (17%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPS 154
FD G R + + + +FITH H DH GLP + S K I+ P
Sbjct: 33 FDCGEGTQRQMARIKLSPMKVDHIFITHLHGDHFLGLPGMIQSMAFRGRKESLHIYGPEG 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVIYL 213
+ + VE + ++LG L+ + +V E ++ N+ ++ THH I + Y +
Sbjct: 93 MIKTVENI----KNLGYYALSFPIHTYEVMEGVVLQTNEYLIECCPTHHSILNLAYSVEE 148
Query: 214 LR--KKLKKQYIHLK---GKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTT 256
R K L+++ I L G KL+K VE+ ++ PE + ++GDT
Sbjct: 149 KRSPKFLREKAIQLGLKPGPDFGKLQKGIPVELEGTLIKPEQVLGAKRKGRKIVYSGDTK 208
Query: 257 SEFMLNPRNAD-ALRAKILITEATFLDDEMSIEHAQQHGHT 296
P A+ A +LI E+T+ + S A ++GH+
Sbjct: 209 P----CPEMVQFAIHADVLIHESTYESAQES--KALENGHS 243
>gi|344213174|ref|YP_004797494.1| metallo-beta-lactamase-like/ribonuclease Z [Haloarcula hispanica
ATCC 33960]
gi|343784529|gb|AEM58506.1| metallo-beta-lactamase-like / ribonuclease Z [Haloarcula hispanica
ATCC 33960]
Length = 309
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 37/232 (15%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + + I P
Sbjct: 33 FDCGEGTQRQMMRYGTGFAIDHLFVTHLHGDHVLGIPGLLQTWDFNERERAIAIHTPAGT 92
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ ++++L + + + + + ++ V+ G+ R++ +R +T H S GYV+
Sbjct: 93 RGNIKQLIQANGTTPSFPVRINEVS--AGDVVLDRSEYEIRAIETEHRCASVGYVLDEDD 150
Query: 212 ---YLLRKKLKKQYIHLKGKQIEKLKKS-GVEITDIILSPEV-----------AFTGDT- 255
R+K ++++ G + KL + VE + PE +TGDT
Sbjct: 151 RKGKFDREKAEEEFGIPPGPKYSKLHRGEAVEHDGETIQPEAVVGPARPGRRFVYTGDTL 210
Query: 256 -TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-RQA 305
T + +AD +L+ +ATF +D A H + D+ RQA
Sbjct: 211 PTESVIEASEDAD-----LLVHDATFAEDRKERAKATAHSTAREAADVARQA 257
>gi|253733248|ref|ZP_04867413.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH130]
gi|386831116|ref|YP_006237770.1| hypothetical protein SAEMRSA15_14260 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|417798930|ref|ZP_12446084.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21310]
gi|417897979|ref|ZP_12541905.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21259]
gi|417901911|ref|ZP_12545787.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21266]
gi|418313243|ref|ZP_12924737.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21334]
gi|418600026|ref|ZP_13163500.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21343]
gi|418645177|ref|ZP_13207305.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-55]
gi|418656714|ref|ZP_13218513.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-105]
gi|421150523|ref|ZP_15610179.1| metallo-beta-lactamase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443639944|ref|ZP_21123944.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21196]
gi|448743020|ref|ZP_21724934.1| ribonuclease Z [Staphylococcus aureus KT/Y21]
gi|253728788|gb|EES97517.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH130]
gi|334275092|gb|EGL93393.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21310]
gi|341845750|gb|EGS86952.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21266]
gi|341849481|gb|EGS90624.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21259]
gi|365236514|gb|EHM77403.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21334]
gi|374395615|gb|EHQ66878.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21343]
gi|375024010|gb|EHS17455.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-55]
gi|375032877|gb|EHS26096.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-105]
gi|385196508|emb|CCG16137.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|394329913|gb|EJE56015.1| metallo-beta-lactamase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443406219|gb|ELS64803.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21196]
gi|445563707|gb|ELY19864.1| ribonuclease Z [Staphylococcus aureus KT/Y21]
Length = 306
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK V E+ +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYV----EMSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
T S + R+AD +++ EAT++D E + + H H
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHLANNYHHSH 249
>gi|227891089|ref|ZP_04008894.1| ribonuclease Z [Lactobacillus salivarius ATCC 11741]
gi|227866963|gb|EEJ74384.1| ribonuclease Z [Lactobacillus salivarius ATCC 11741]
Length = 317
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 119 VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR G + P TI+ P I + V ++ ++ + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
V L+ + V +K H I GY I
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRI 152
>gi|222157024|ref|YP_002557163.1| ribonuclease Z [Escherichia coli LF82]
gi|387617629|ref|YP_006120651.1| ribonuclease Z [Escherichia coli O83:H1 str. NRG 857C]
gi|222034029|emb|CAP76770.1| ribonuclease Z [Escherichia coli LF82]
gi|312946890|gb|ADR27717.1| ribonuclease Z [Escherichia coli O83:H1 str. NRG 857C]
Length = 305
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|418961583|ref|ZP_13513469.1| ribonuclease Z [Lactobacillus salivarius SMXD51]
gi|380344115|gb|EIA32462.1| ribonuclease Z [Lactobacillus salivarius SMXD51]
Length = 317
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 119 VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR G + P TI+ P I + V ++ ++ + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
V L+ + V +K H I GY I
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRI 152
>gi|424798152|ref|ZP_18223694.1| Ribonuclease Z [Cronobacter sakazakii 696]
gi|423233873|emb|CCK05564.1| Ribonuclease Z [Cronobacter sakazakii 696]
Length = 304
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 98/238 (41%), Gaps = 46/238 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P I+ P I E VE + S + LN+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGPKGIAEFVETTLRLSGSWTSYPLNVH 118
Query: 178 LVA----LDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLK 226
+ LD GE + V + H + GY I L +LK + +
Sbjct: 119 EITEGQLLDDGE-------LTVTAYPLTHPVECYGYRIEEQDKSGALDAARLKAAGV-MP 170
Query: 227 GKQIEKLKKSGVEIT----------DIILSP----EVAFTGDTTSEFMLNPRNADALRAK 272
G ++LK+ G +T D + +P ++A GDT P+ + R
Sbjct: 171 GPLFQQLKR-GETVTLADGRTVCGADYLSAPRPGKKIAIFGDTGP----TPQAVNLARDV 225
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLTEGFKSVYTS 330
++ T L+ M+ E A GH+ Q ++ AK + +T F S Y++
Sbjct: 226 DVMVHETTLEAAMA-EKANGRGHS-----TTQQAAEVARDAGAKRLLMTH-FSSRYSA 276
>gi|418875441|ref|ZP_13429698.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC93]
gi|377769997|gb|EHT93763.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC93]
Length = 306
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK V E+ +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYV----EMSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
T S + R+AD +++ EAT++D E + + H H
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHLANNYHHSH 249
>gi|417810057|ref|ZP_12456737.1| ribonuclease Z [Lactobacillus salivarius GJ-24]
gi|335349929|gb|EGM51427.1| ribonuclease Z [Lactobacillus salivarius GJ-24]
Length = 317
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 119 VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR G + P TI+ P I + V ++ ++ + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
V L+ + V +K H I GY I
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRI 152
>gi|57650460|ref|YP_186389.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus COL]
gi|87159998|ref|YP_494149.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|88195309|ref|YP_500113.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|151221623|ref|YP_001332445.1| hypothetical protein NWMN_1411 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509732|ref|YP_001575391.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|221140075|ref|ZP_03564568.1| ribonuclease Z [Staphylococcus aureus subsp. aureus str. JKD6009]
gi|253732147|ref|ZP_04866312.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|258451162|ref|ZP_05699197.1| ribonuclease Z [Staphylococcus aureus A5948]
gi|262049091|ref|ZP_06021968.1| hypothetical protein SAD30_0248 [Staphylococcus aureus D30]
gi|262051174|ref|ZP_06023398.1| hypothetical protein SA930_1605 [Staphylococcus aureus 930918-3]
gi|282924753|ref|ZP_06332420.1| ribonuclease Z [Staphylococcus aureus A9765]
gi|284024564|ref|ZP_06378962.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 132]
gi|294848534|ref|ZP_06789280.1| ribonuclease Z [Staphylococcus aureus A9754]
gi|304380909|ref|ZP_07363569.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|379014713|ref|YP_005290949.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VC40]
gi|384550327|ref|YP_005739579.1| metallo-beta-lactamase, AtsA/ElaC family [Staphylococcus aureus
subsp. aureus JKD6159]
gi|384862106|ref|YP_005744826.1| metallo-beta-lactamase, AtsA/ElaC family [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|384870047|ref|YP_005752761.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus T0131]
gi|387143113|ref|YP_005731506.1| hypothetical protein SATW20_15020 [Staphylococcus aureus subsp.
aureus TW20]
gi|415686312|ref|ZP_11450449.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CGS01]
gi|417649964|ref|ZP_12299747.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21189]
gi|418277317|ref|ZP_12891904.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21178]
gi|418285027|ref|ZP_12897727.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21209]
gi|418316388|ref|ZP_12927826.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21340]
gi|418319468|ref|ZP_12930848.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21232]
gi|418569487|ref|ZP_13133813.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21283]
gi|418579431|ref|ZP_13143526.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1114]
gi|418641709|ref|ZP_13203914.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-24]
gi|418648724|ref|ZP_13210762.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-88]
gi|418650598|ref|ZP_13212616.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-91]
gi|418658987|ref|ZP_13220682.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-111]
gi|418871275|ref|ZP_13425656.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-125]
gi|418903812|ref|ZP_13457853.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1770]
gi|418906450|ref|ZP_13460476.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC345D]
gi|418912116|ref|ZP_13466097.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG547]
gi|418925766|ref|ZP_13479668.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG2018]
gi|418928856|ref|ZP_13482742.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1612]
gi|418948563|ref|ZP_13500859.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-157]
gi|418955673|ref|ZP_13507610.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-189]
gi|419773376|ref|ZP_14299384.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CO-23]
gi|422742712|ref|ZP_16796715.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MRSA177]
gi|422746204|ref|ZP_16800137.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MRSA131]
gi|424785340|ref|ZP_18212143.1| Ribonuclease Z [Staphylococcus aureus CN79]
gi|440707357|ref|ZP_20888056.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21282]
gi|440734956|ref|ZP_20914567.1| ribonuclease Z [Staphylococcus aureus subsp. aureus DSM 20231]
gi|76363381|sp|Q5HFR8.1|RNZ_STAAC RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|122539452|sp|Q2FY67.1|RNZ_STAA8 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|123485735|sp|Q2FGM9.1|RNZ_STAA3 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|172048896|sp|A6QH51.1|RNZ_STAAE RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|189043793|sp|A8Z2D7.1|RNZ_STAAT RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|57284646|gb|AAW36740.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus COL]
gi|87125972|gb|ABD20486.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|87202867|gb|ABD30677.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|150374423|dbj|BAF67683.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368541|gb|ABX29512.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|253724102|gb|EES92831.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|257861217|gb|EEV84030.1| ribonuclease Z [Staphylococcus aureus A5948]
gi|259160811|gb|EEW45831.1| hypothetical protein SA930_1605 [Staphylococcus aureus 930918-3]
gi|259162760|gb|EEW47325.1| hypothetical protein SAD30_0248 [Staphylococcus aureus D30]
gi|269940996|emb|CBI49380.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282592760|gb|EFB97766.1| ribonuclease Z [Staphylococcus aureus A9765]
gi|294824560|gb|EFG40983.1| ribonuclease Z [Staphylococcus aureus A9754]
gi|302333176|gb|ADL23369.1| metallo-beta-lactamase, AtsA/ElaC family [Staphylococcus aureus
subsp. aureus JKD6159]
gi|302751335|gb|ADL65512.1| metallo-beta-lactamase, AtsA/ElaC family [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304340636|gb|EFM06570.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|315198805|gb|EFU29133.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CGS01]
gi|320140612|gb|EFW32466.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MRSA131]
gi|320144148|gb|EFW35917.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MRSA177]
gi|329314182|gb|AEB88595.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus T0131]
gi|329725275|gb|EGG61762.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21189]
gi|365172038|gb|EHM62783.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21209]
gi|365173607|gb|EHM64096.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21178]
gi|365240587|gb|EHM81359.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21232]
gi|365241072|gb|EHM81827.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21340]
gi|371985616|gb|EHP02677.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21283]
gi|374363410|gb|AEZ37515.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VC40]
gi|375018164|gb|EHS11744.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-24]
gi|375025283|gb|EHS18688.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-88]
gi|375027884|gb|EHS21242.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-91]
gi|375036972|gb|EHS30030.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-111]
gi|375368744|gb|EHS72652.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-125]
gi|375370759|gb|EHS74557.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-189]
gi|375371662|gb|EHS75429.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-157]
gi|377697458|gb|EHT21813.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1114]
gi|377722373|gb|EHT46499.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG547]
gi|377738768|gb|EHT62777.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1612]
gi|377742827|gb|EHT66812.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1770]
gi|377744835|gb|EHT68812.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG2018]
gi|377763355|gb|EHT87211.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC345D]
gi|383972799|gb|EID88823.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CO-23]
gi|421956750|gb|EKU09079.1| Ribonuclease Z [Staphylococcus aureus CN79]
gi|436431051|gb|ELP28405.1| ribonuclease Z [Staphylococcus aureus subsp. aureus DSM 20231]
gi|436506113|gb|ELP41952.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21282]
Length = 306
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK V E+ +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYV----EMSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
T S + R+AD +++ EAT++D E + + H H
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHLANNYHHSH 249
>gi|301300910|ref|ZP_07207082.1| ribonuclease Z [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851509|gb|EFK79221.1| ribonuclease Z [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 317
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 119 VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR G + P TI+ P I + V ++ ++ + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
V L+ + V +K H I GY I
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRI 152
>gi|422806264|ref|ZP_16854696.1| ribonuclease BN [Escherichia fergusonii B253]
gi|324112802|gb|EGC06778.1| ribonuclease BN [Escherichia fergusonii B253]
Length = 305
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 43/226 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + +++P TI+ P I+E VE + S + LD
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMAGSMQPLTIYGPKGIQEFVETALRLSSSW--TDYPLD 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGK 228
++ + GE + +R V + H + G+ I L K LK + G
Sbjct: 118 IIEISAGEILDDGLRK---VTAYPMEHPLECYGFRIEEYEKPGALDAKGLKAAGVQ-PGP 173
Query: 229 QIEKLK-------KSGVEITDI-ILSPE-----VAFTGDT--TSEFMLNPRNADALRAKI 273
+ LK + G +I L+P +A GDT + R+AD +
Sbjct: 174 LFQDLKAGKTVTLEDGRQINGADYLAPATPGKVLAIFGDTAPCDNALELARHAD-----V 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEDIRQAVLKLQSKVSAKVV 318
+I EAT +MS+E A GH S + A L ++ VS ++
Sbjct: 229 MIHEATL---DMSMEAKANSRGH---SSTCQAATLAREAGVSKLII 268
>gi|385840643|ref|YP_005863967.1| Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Lactobacillus salivarius CECT 5713]
gi|300214764|gb|ADJ79180.1| Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Lactobacillus salivarius CECT 5713]
Length = 317
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 119 VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR G + P TI+ P I + V ++ ++ + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
V L+ + V +K H I GY I
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRI 152
>gi|15924494|ref|NP_372028.1| metallo-beta-lactamase [Staphylococcus aureus subsp. aureus Mu50]
gi|15927085|ref|NP_374618.1| hypothetical protein SA1335 [Staphylococcus aureus subsp. aureus
N315]
gi|148267988|ref|YP_001246931.1| ribonuclease Z [Staphylococcus aureus subsp. aureus JH9]
gi|150394053|ref|YP_001316728.1| ribonuclease Z [Staphylococcus aureus subsp. aureus JH1]
gi|156979823|ref|YP_001442082.1| hypothetical protein SAHV_1492 [Staphylococcus aureus subsp. aureus
Mu3]
gi|253314872|ref|ZP_04838085.1| hypothetical protein SauraC_01605 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255006290|ref|ZP_05144891.2| hypothetical protein SauraM_07475 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257793581|ref|ZP_05642560.1| ribonuclease Z [Staphylococcus aureus A9781]
gi|258411119|ref|ZP_05681399.1| ribonuclease Z [Staphylococcus aureus A9763]
gi|258419917|ref|ZP_05682878.1| ribonuclease Z [Staphylococcus aureus A9719]
gi|258437335|ref|ZP_05689319.1| ribonuclease Z [Staphylococcus aureus A9299]
gi|258443540|ref|ZP_05691879.1| ribonuclease Z [Staphylococcus aureus A8115]
gi|258446747|ref|ZP_05694901.1| ribonuclease Z [Staphylococcus aureus A6300]
gi|258448662|ref|ZP_05696774.1| ribonuclease Z [Staphylococcus aureus A6224]
gi|258454278|ref|ZP_05702248.1| ribonuclease Z [Staphylococcus aureus A5937]
gi|269203131|ref|YP_003282400.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus ED98]
gi|282893003|ref|ZP_06301237.1| ribonuclease Z [Staphylococcus aureus A8117]
gi|282928974|ref|ZP_06336561.1| ribonuclease Z [Staphylococcus aureus A10102]
gi|295406624|ref|ZP_06816429.1| ribonuclease Z [Staphylococcus aureus A8819]
gi|296276346|ref|ZP_06858853.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MR1]
gi|297245792|ref|ZP_06929657.1| ribonuclease Z [Staphylococcus aureus A8796]
gi|384864726|ref|YP_005750085.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|387150646|ref|YP_005742210.1| Ribonuclease Z [Staphylococcus aureus 04-02981]
gi|415692617|ref|ZP_11454537.1| hypothetical protein CGSSa03_01788 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417651188|ref|ZP_12300951.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21172]
gi|417801339|ref|ZP_12448434.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21318]
gi|417894562|ref|ZP_12538577.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21201]
gi|418424653|ref|ZP_12997767.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS1]
gi|418427647|ref|ZP_13000652.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS2]
gi|418430489|ref|ZP_13003400.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS3a]
gi|418433632|ref|ZP_13006224.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS4]
gi|418437127|ref|ZP_13008923.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS5]
gi|418440027|ref|ZP_13011728.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS6]
gi|418443045|ref|ZP_13014644.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS7]
gi|418446107|ref|ZP_13017581.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS8]
gi|418449121|ref|ZP_13020507.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS9]
gi|418451934|ref|ZP_13023268.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS10]
gi|418454927|ref|ZP_13026186.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS11a]
gi|418457805|ref|ZP_13029004.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS11b]
gi|418567174|ref|ZP_13131539.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21272]
gi|418640284|ref|ZP_13202516.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-3]
gi|418652910|ref|ZP_13214873.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-99]
gi|418662133|ref|ZP_13223687.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-122]
gi|418878420|ref|ZP_13432655.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1165]
gi|418881185|ref|ZP_13435402.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1213]
gi|418884036|ref|ZP_13438229.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1769]
gi|418886769|ref|ZP_13440917.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1150]
gi|418895265|ref|ZP_13449360.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1057]
gi|418914603|ref|ZP_13468575.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC340D]
gi|418920586|ref|ZP_13474518.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC348]
gi|418931808|ref|ZP_13485643.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1750]
gi|418991432|ref|ZP_13539093.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1096]
gi|419784652|ref|ZP_14310415.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-M]
gi|424769036|ref|ZP_18196273.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CM05]
gi|443635588|ref|ZP_21119716.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21236]
gi|41017526|sp|P60196.1|RNZ_STAAM RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|41017527|sp|P60197.1|RNZ_STAAN RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|166991504|sp|A7X2M2.1|RNZ_STAA1 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|189043791|sp|A6U1X3.1|RNZ_STAA2 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|189043792|sp|A5IT32.1|RNZ_STAA9 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|13701303|dbj|BAB42597.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247275|dbj|BAB57666.1| similar to metallo-beta-lactamase, AtsA/ElaC family [Staphylococcus
aureus subsp. aureus Mu50]
gi|147741057|gb|ABQ49355.1| RNAse Z [Staphylococcus aureus subsp. aureus JH9]
gi|149946505|gb|ABR52441.1| ribonuclease Z [Staphylococcus aureus subsp. aureus JH1]
gi|156721958|dbj|BAF78375.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|257787553|gb|EEV25893.1| ribonuclease Z [Staphylococcus aureus A9781]
gi|257840269|gb|EEV64733.1| ribonuclease Z [Staphylococcus aureus A9763]
gi|257844102|gb|EEV68490.1| ribonuclease Z [Staphylococcus aureus A9719]
gi|257848540|gb|EEV72528.1| ribonuclease Z [Staphylococcus aureus A9299]
gi|257850946|gb|EEV74889.1| ribonuclease Z [Staphylococcus aureus A8115]
gi|257854322|gb|EEV77271.1| ribonuclease Z [Staphylococcus aureus A6300]
gi|257857940|gb|EEV80829.1| ribonuclease Z [Staphylococcus aureus A6224]
gi|257863557|gb|EEV86315.1| ribonuclease Z [Staphylococcus aureus A5937]
gi|262075421|gb|ACY11394.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus ED98]
gi|282589381|gb|EFB94472.1| ribonuclease Z [Staphylococcus aureus A10102]
gi|282764321|gb|EFC04447.1| ribonuclease Z [Staphylococcus aureus A8117]
gi|285817185|gb|ADC37672.1| Ribonuclease Z [Staphylococcus aureus 04-02981]
gi|294968371|gb|EFG44395.1| ribonuclease Z [Staphylococcus aureus A8819]
gi|297177443|gb|EFH36695.1| ribonuclease Z [Staphylococcus aureus A8796]
gi|312829893|emb|CBX34735.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129777|gb|EFT85767.1| hypothetical protein CGSSa03_01788 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329727372|gb|EGG63828.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21172]
gi|334276961|gb|EGL95201.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21318]
gi|341851856|gb|EGS92760.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21201]
gi|371982878|gb|EHP00027.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21272]
gi|375014848|gb|EHS08519.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-3]
gi|375021078|gb|EHS14585.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-99]
gi|375037078|gb|EHS30132.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-122]
gi|377694542|gb|EHT18907.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1165]
gi|377695071|gb|EHT19435.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1057]
gi|377712986|gb|EHT37199.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1750]
gi|377714371|gb|EHT38572.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1769]
gi|377723554|gb|EHT47679.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1096]
gi|377725722|gb|EHT49835.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1150]
gi|377730928|gb|EHT54986.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1213]
gi|377758105|gb|EHT81993.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC340D]
gi|377764312|gb|EHT88165.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC348]
gi|383363862|gb|EID41188.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-M]
gi|387717935|gb|EIK05930.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS2]
gi|387718229|gb|EIK06213.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS3a]
gi|387719432|gb|EIK07377.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS1]
gi|387724856|gb|EIK12487.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS4]
gi|387727115|gb|EIK14647.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS5]
gi|387730177|gb|EIK17584.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS6]
gi|387735245|gb|EIK22374.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS8]
gi|387736721|gb|EIK23809.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS7]
gi|387736884|gb|EIK23970.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS9]
gi|387744815|gb|EIK31579.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS10]
gi|387744980|gb|EIK31742.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS11a]
gi|387746573|gb|EIK33302.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS11b]
gi|402348427|gb|EJU83419.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CM05]
gi|408423641|emb|CCJ11052.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408425631|emb|CCJ13018.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408427618|emb|CCJ14981.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408429607|emb|CCJ26772.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408431594|emb|CCJ18909.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408433588|emb|CCJ20873.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408435580|emb|CCJ22840.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408437564|emb|CCJ24807.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|443409229|gb|ELS67727.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21236]
Length = 306
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK V E+ +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYV----EMSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
T S + R+AD +++ EAT++D E + + H H
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHLANNYHHSH 249
>gi|422370149|ref|ZP_16450543.1| ribonuclease Z [Escherichia coli MS 16-3]
gi|432899288|ref|ZP_20109980.1| ribonuclease Z [Escherichia coli KTE192]
gi|433029245|ref|ZP_20217104.1| ribonuclease Z [Escherichia coli KTE109]
gi|315298072|gb|EFU57341.1| ribonuclease Z [Escherichia coli MS 16-3]
gi|431426940|gb|ELH08984.1| ribonuclease Z [Escherichia coli KTE192]
gi|431542985|gb|ELI17981.1| ribonuclease Z [Escherichia coli KTE109]
Length = 305
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|257887532|ref|ZP_05667185.1| ribonuclease Z [Enterococcus faecium 1,141,733]
gi|431034937|ref|ZP_19491814.1| ribonuclease Z [Enterococcus faecium E1590]
gi|431761784|ref|ZP_19550346.1| ribonuclease Z [Enterococcus faecium E3548]
gi|257823586|gb|EEV50518.1| ribonuclease Z [Enterococcus faecium 1,141,733]
gi|430563652|gb|ELB02861.1| ribonuclease Z [Enterococcus faecium E1590]
gi|430624476|gb|ELB61126.1| ribonuclease Z [Enterococcus faecium E3548]
Length = 313
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 99/238 (41%), Gaps = 36/238 (15%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R R + +FITH H DHI GLP ++SR P I+ P I+E ++ +
Sbjct: 48 RTTIRPRKIGKIFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGPKGIEEYIK----VS 103
Query: 167 RSLGNVELNLDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH 224
+ L+ L +++ ET + D V K +H I S GY + K + Q
Sbjct: 104 LGISQTRLSYPLKFIELNETDPIFTDQQFSVYAKKLNHGIDSFGYRVVEHDHKGELQVDR 163
Query: 225 LK------GKQIEKLK-------KSGVEITDI-ILSPE-----VAFTGDT--TSEFMLNP 263
LK G KLK K G I + P V GDT T ++
Sbjct: 164 LKELGIPAGPLYGKLKQGETIQLKDGRTINGKDFVGPNKKGRIVTILGDTRKTHNSVVLA 223
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI---RQAVLKLQSKVSAKVV 318
N+D IL+ E+TF DE + H H TH + ++ QA L + +SA+ +
Sbjct: 224 ENSD-----ILVHESTFNKDEARMAHNYFHSTTHQAAEVAKEAQAKRLLLTHISARYL 276
>gi|425423085|ref|ZP_18804253.1| ribonuclease Z [Escherichia coli 0.1288]
gi|408343640|gb|EKJ58034.1| ribonuclease Z [Escherichia coli 0.1288]
Length = 305
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 100 LKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKED 158
L AF++G+ + +FI+H H DH+ GLP + SR + ++P TI+ P I+E
Sbjct: 48 LHTAFNLGKL-------DKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREF 100
Query: 159 VEKLFEIHRSLGNVELNLDLVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
VE I S + L++V + GE + +R V + H + GY I
Sbjct: 101 VETALRISGSW--TDYPLEIVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|227893473|ref|ZP_04011278.1| ribonuclease Z [Lactobacillus ultunensis DSM 16047]
gi|227864698|gb|EEJ72119.1| ribonuclease Z [Lactobacillus ultunensis DSM 16047]
Length = 312
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 85/218 (38%), Gaps = 33/218 (15%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP +++R ++ P TI+ P
Sbjct: 36 FDVGEATQHQILRTNIRLRKITKIFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
I++ V+ ++ R+ V + V L V + H IPS G+ I
Sbjct: 96 IEQFVKTSLKVSRT--KVSYPIKFVELSKPGLICQDKSFRVYTDRLDHRIPSFGFRIVED 153
Query: 213 -----LLRKKLKKQYI-------HLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDT 255
LL KL K + LK Q L V L PE V DT
Sbjct: 154 SHPGELLIDKLAKYNVPNGPLLGKLKQGQQIVLSDGTVLNGKDFLGPEKPGRIVTIIYDT 213
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQH 293
S + D A +L+ E+TF DE + H H
Sbjct: 214 RSTPSIARLAKD---ADVLVHESTFAGDEAKMAHNYYH 248
>gi|261417831|ref|YP_003251513.1| ribonuclease Z [Geobacillus sp. Y412MC61]
gi|297529499|ref|YP_003670774.1| ribonuclease Z [Geobacillus sp. C56-T3]
gi|319767357|ref|YP_004132858.1| ribonuclease Z [Geobacillus sp. Y412MC52]
gi|261374288|gb|ACX77031.1| ribonuclease Z [Geobacillus sp. Y412MC61]
gi|297252751|gb|ADI26197.1| ribonuclease Z [Geobacillus sp. C56-T3]
gi|317112223|gb|ADU94715.1| ribonuclease Z [Geobacillus sp. Y412MC52]
Length = 307
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + + P T+F P I+ VE + + ELN
Sbjct: 59 IFITHLHGDHLFGLPGLLGSRSFQSGETPLTVFGPKGIRAFVETALAVSGTKLRYELN-- 116
Query: 178 LVALDVGETY-EMRNDIVVRPFKTHHVIPSQGYVI 211
+V +D G + + R ++ + + H +PS G+ +
Sbjct: 117 IVEIDEGVIFDDERFSVIAK--RLDHGMPSYGFRV 149
>gi|170017531|ref|YP_001728450.1| beta-lactamase superfamily hydrolase [Leuconostoc citreum KM20]
gi|414596893|ref|ZP_11446465.1| Ribonuclease Z [Leuconostoc citreum LBAE E16]
gi|421877707|ref|ZP_16309248.1| Ribonuclease Z [Leuconostoc citreum LBAE C10]
gi|421879667|ref|ZP_16311128.1| Ribonuclease Z [Leuconostoc citreum LBAE C11]
gi|254808645|sp|B1MZQ4.1|RNZ_LEUCK RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|169804388|gb|ACA83006.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Leuconostoc citreum KM20]
gi|372556485|emb|CCF25368.1| Ribonuclease Z [Leuconostoc citreum LBAE C10]
gi|390446434|emb|CCF27248.1| Ribonuclease Z [Leuconostoc citreum LBAE C11]
gi|390482257|emb|CCF28526.1| Ribonuclease Z [Leuconostoc citreum LBAE E16]
Length = 322
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 32/221 (14%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + +FI+H H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFISHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI- 211
+KE V+ + + + L V L G ++ + V+ K H I S G+ +
Sbjct: 96 KGVKEFVQTALRVSET--RLSYPLVFVELTAGVVFDDKTFRVIAA-KMKHRIESWGFRVE 152
Query: 212 ------YLLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPEVAFTGDTTS----EFM 260
LL KL+ + I G +LK V + D + + G F+
Sbjct: 153 EKDHPGELLVNKLRAENIP-SGPIFGQLKAGKRVSLPDGRILDGHDYVGPAQRGRVVTFI 211
Query: 261 LNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHT 296
L+ R D A A +L+ E+T+ E + A+ H H+
Sbjct: 212 LDTRPNDNIELLARHADVLVHESTYGAGEDEAKMARAHAHS 252
>gi|409096056|ref|ZP_11216080.1| ribonuclease Z [Thermococcus zilligii AN1]
Length = 311
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 34/189 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L+N K P I+ P E V+ + G D
Sbjct: 57 IFITHFHGDHYLGLGGLLQTMNLWNRKKPLHIYGPEHTFEFVQNFI----NSGFFGPAFD 112
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+ ++GE + +R F+ H IP+ GYV L +KL K Y G +
Sbjct: 113 IYVHELGEARLKFDGYEIRSFRVKHGIPALGYVFKEEDRRGKFLPEKL-KVYGLEPGPLL 171
Query: 231 EKLKKSG-VEITDIILSPE-----------VAFTGDTTSEFMLNPRNADAL---RAKILI 275
KL++ G +E+ ++ E + +TGDT P AL +A +LI
Sbjct: 172 GKLEREGQIELNGRVIRLEDVTGPRRRGVKLVYTGDTA------PCKRVALFSEKADLLI 225
Query: 276 TEATFLDDE 284
+AT+L E
Sbjct: 226 HDATYLTPE 234
>gi|385786468|ref|YP_005817577.1| ribonuclease Z [Erwinia sp. Ejp617]
gi|310765740|gb|ADP10690.1| ribonuclease Z [Erwinia sp. Ejp617]
Length = 304
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R P + + +FITH H DHI GLP + SR + ++P T++ P
Sbjct: 36 FDCGEGTQHQILRTPIKPGRIEKIFITHLHGDHIFGLPGLLTSRSMNGCVEPMTLYGPSG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
IK VE + S N L+++ + GE ++ + V + H + GY I
Sbjct: 96 IKTFVETSLSLSGSWLN--FPLEIIEISAGEVFQDAH-FRVTAYPLTHPVECYGYRI 149
>gi|386714729|ref|YP_006181052.1| ribonuclease Z [Halobacillus halophilus DSM 2266]
gi|384074285|emb|CCG45778.1| ribonuclease Z [Halobacillus halophilus DSM 2266]
Length = 308
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 82/196 (41%), Gaps = 28/196 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR + P T++ P +KE ++ +I L
Sbjct: 59 IFITHLHGDHIYGLPGLLSSRSFQGGETPVTVYGPRGLKEYIDITLQI----SGTHLRYP 114
Query: 178 LVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
L +V E +D VV H + S GY++ L KLK+ Y
Sbjct: 115 LYVEEVEEGILFEDDQFVVEAVSLQHGLESYGYILTEKDKIGELKPSKLKELGLEPGPIY 174
Query: 223 IHLKGKQIEKLKKSGVEITDIILSP-----EVAFTGDTTSEFMLNPRNADALRAKILITE 277
+K + +L + +L P +++ GDT L + D + +L+ E
Sbjct: 175 QLIKSQSQTRLDNGKIIYRKDVLGPPKKGRKISILGDTRYIPDLKYKVKD---SDVLVHE 231
Query: 278 ATFLDDEMSIEHAQQH 293
ATF DE + + H
Sbjct: 232 ATFASDENQMAYDYFH 247
>gi|227551356|ref|ZP_03981405.1| ribonuclease Z [Enterococcus faecium TX1330]
gi|257896027|ref|ZP_05675680.1| ribonuclease Z [Enterococcus faecium Com12]
gi|257898655|ref|ZP_05678308.1| ribonuclease Z [Enterococcus faecium Com15]
gi|293378801|ref|ZP_06624958.1| ribonuclease Z [Enterococcus faecium PC4.1]
gi|293570538|ref|ZP_06681593.1| ribonuclease Z [Enterococcus faecium E980]
gi|424763632|ref|ZP_18191102.1| ribonuclease Z [Enterococcus faecium TX1337RF]
gi|425054097|ref|ZP_18457612.1| ribonuclease Z [Enterococcus faecium 505]
gi|430841145|ref|ZP_19459064.1| ribonuclease Z [Enterococcus faecium E1007]
gi|431071397|ref|ZP_19494368.1| ribonuclease Z [Enterococcus faecium E1604]
gi|431104268|ref|ZP_19496992.1| ribonuclease Z [Enterococcus faecium E1613]
gi|431582257|ref|ZP_19520206.1| ribonuclease Z [Enterococcus faecium E1861]
gi|431737852|ref|ZP_19526804.1| ribonuclease Z [Enterococcus faecium E1972]
gi|431740270|ref|ZP_19529187.1| ribonuclease Z [Enterococcus faecium E2039]
gi|431756532|ref|ZP_19545164.1| ribonuclease Z [Enterococcus faecium E3083]
gi|227179475|gb|EEI60447.1| ribonuclease Z [Enterococcus faecium TX1330]
gi|257832592|gb|EEV59013.1| ribonuclease Z [Enterococcus faecium Com12]
gi|257836567|gb|EEV61641.1| ribonuclease Z [Enterococcus faecium Com15]
gi|291609484|gb|EFF38751.1| ribonuclease Z [Enterococcus faecium E980]
gi|292642594|gb|EFF60747.1| ribonuclease Z [Enterococcus faecium PC4.1]
gi|402422529|gb|EJV54766.1| ribonuclease Z [Enterococcus faecium TX1337RF]
gi|403036622|gb|EJY47965.1| ribonuclease Z [Enterococcus faecium 505]
gi|430493921|gb|ELA70171.1| ribonuclease Z [Enterococcus faecium E1007]
gi|430567030|gb|ELB06116.1| ribonuclease Z [Enterococcus faecium E1604]
gi|430569856|gb|ELB08835.1| ribonuclease Z [Enterococcus faecium E1613]
gi|430594147|gb|ELB32117.1| ribonuclease Z [Enterococcus faecium E1861]
gi|430598458|gb|ELB36199.1| ribonuclease Z [Enterococcus faecium E1972]
gi|430603806|gb|ELB41319.1| ribonuclease Z [Enterococcus faecium E2039]
gi|430620386|gb|ELB57188.1| ribonuclease Z [Enterococcus faecium E3083]
Length = 313
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 101/238 (42%), Gaps = 36/238 (15%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R R + +FITH H DHI GLP ++SR P I+ P I+E ++ +
Sbjct: 48 RTTIRPRKIGKIFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGPKGIEEYIK----VS 103
Query: 167 RSLGNVELNLDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH 224
+ L+ L +++ ET + D V K +H I S GY + K + Q
Sbjct: 104 LGISQTRLSYPLKFIELNETDPIFTDQQFSVYAKKLNHGIDSFGYRVVEHDHKGELQVDR 163
Query: 225 LK------GKQIEKLKKS-GVEITD-------IILSPE-----VAFTGDT--TSEFMLNP 263
LK G KLK+ +++ D + P V GDT T ++
Sbjct: 164 LKELGIPAGPLYGKLKQGETIQLEDGRTINGKDFVGPNKKGRIVTILGDTRKTHNSVVLA 223
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI---RQAVLKLQSKVSAKVV 318
N+D IL+ E+TF DE + H H TH + ++ QA L + +SA+ +
Sbjct: 224 ENSD-----ILVHESTFNKDEARMAHNYFHSTTHQAAEVAKEAQAKRLLLTHISARYL 276
>gi|419932923|ref|ZP_14450198.1| ribonuclease Z [Escherichia coli 576-1]
gi|388414897|gb|EIL74840.1| ribonuclease Z [Escherichia coli 576-1]
Length = 311
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S ++ L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--IDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|420192253|ref|ZP_14698113.1| ribonuclease Z [Staphylococcus epidermidis NIHLM023]
gi|394261464|gb|EJE06261.1| ribonuclease Z [Staphylococcus epidermidis NIHLM023]
Length = 306
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVI 211
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYSITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRI 150
>gi|300936832|ref|ZP_07151723.1| ribonuclease Z [Escherichia coli MS 21-1]
gi|300458075|gb|EFK21568.1| ribonuclease Z [Escherichia coli MS 21-1]
Length = 305
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE 188
+V + GE ++
Sbjct: 118 IVEIGAGEIFD 128
>gi|366086046|ref|ZP_09452531.1| ribonuclease Z [Lactobacillus zeae KCTC 3804]
Length = 319
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 98/239 (41%), Gaps = 38/239 (15%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G I Q VFITH H DHI GLP ++ASR P TI+ PP
Sbjct: 36 FDVGEGTQHQILQTTIKPRKIAKVFITHLHGDHIFGLPGFLASRANQGGTDPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
I++ V ++ +S ++ L V L T V + H I S G+ +
Sbjct: 96 IEDFVRTSLKVSQS--HLSYALKFVLLRHPGTVFEDQTFKVSFDRLDHRITSFGFRVEEK 153
Query: 212 ----YLLRKKLKKQ-------YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
LL K++ Y LK GKQ+ + D I + V GDT
Sbjct: 154 PHPGELLIDKVRAAKIPSGPVYAELKAGKQVTLPDGRTFDGHDFIGPAQPGRIVTIFGDT 213
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS 314
P A A +L+ E+TF DE + A+Q+ H S +I+ A L ++ V
Sbjct: 214 RKCSRALPLAAG---ADVLVHESTFGPDESQL--AKQYYH---STNIQAAELAKRAGVG 264
>gi|331683945|ref|ZP_08384541.1| ribonuclease Z [Escherichia coli H299]
gi|432617372|ref|ZP_19853486.1| ribonuclease Z [Escherichia coli KTE75]
gi|450190833|ref|ZP_21890994.1| RNase BN, tRNA processing enzyme [Escherichia coli SEPT362]
gi|331078897|gb|EGI50099.1| ribonuclease Z [Escherichia coli H299]
gi|431153792|gb|ELE54687.1| ribonuclease Z [Escherichia coli KTE75]
gi|449320141|gb|EMD10178.1| RNase BN, tRNA processing enzyme [Escherichia coli SEPT362]
Length = 305
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|293405737|ref|ZP_06649729.1| ribonuclease Z [Escherichia coli FVEC1412]
gi|298381420|ref|ZP_06991019.1| ribonuclease Z [Escherichia coli FVEC1302]
gi|291427945|gb|EFF00972.1| ribonuclease Z [Escherichia coli FVEC1412]
gi|298278862|gb|EFI20376.1| ribonuclease Z [Escherichia coli FVEC1302]
Length = 311
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S ++ L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--IDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|397691645|ref|YP_006528899.1| Beta-lactamase domain protein [Melioribacter roseus P3M]
gi|395813137|gb|AFN75886.1| Beta-lactamase domain protein [Melioribacter roseus P3M]
Length = 240
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 105 DIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLF 163
D+G P ++ + +FI+HGH DH+GG+ + + K P +I+ P E +E ++
Sbjct: 57 DVG--PETILRVSDIFISHGHHDHVGGVWSLLTYWSVLRRKTPLSIYYPEGCVE-IESIY 113
Query: 164 EIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHV----------IPSQGYVIY 212
+ + EL+ + + + RN + ++PFK +H IPS G+ Y
Sbjct: 114 KAFNEVYGKELSYKITLKPISDQKAFTRNSVRIKPFKVNHRELNPDGTSAEIPSLGFKYY 173
Query: 213 LLRKKL 218
K +
Sbjct: 174 YDSKSI 179
>gi|387873158|ref|YP_005804546.1| ribonuclease Z [Erwinia pyrifoliae DSM 12163]
gi|283480259|emb|CAY76175.1| ribonuclease Z [Erwinia pyrifoliae DSM 12163]
Length = 318
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R P + + +FITH H DHI GLP + SR + ++P T++ P
Sbjct: 50 FDCGEGTQHQILRTPIKPGRIEKIFITHLHGDHIFGLPGLLTSRSMNGCVEPMTLYGPSG 109
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
IK VE + S N L+++ + GE ++ + V + H + GY I
Sbjct: 110 IKTFVETSLSLSGSWLN--FPLEIIEISAGEVFQDAH-FRVTAYPLTHPVECYGYRI 163
>gi|218705802|ref|YP_002413321.1| ribonuclease Z [Escherichia coli UMN026]
gi|300896943|ref|ZP_07115426.1| ribonuclease Z [Escherichia coli MS 198-1]
gi|331663785|ref|ZP_08364695.1| ribonuclease Z [Escherichia coli TA143]
gi|417587288|ref|ZP_12238058.1| ribonuclease Z [Escherichia coli STEC_C165-02]
gi|422334240|ref|ZP_16415247.1| ribonuclease Z [Escherichia coli 4_1_47FAA]
gi|432354211|ref|ZP_19597484.1| ribonuclease Z [Escherichia coli KTE2]
gi|432402563|ref|ZP_19645315.1| ribonuclease Z [Escherichia coli KTE26]
gi|432426827|ref|ZP_19669328.1| ribonuclease Z [Escherichia coli KTE181]
gi|432461293|ref|ZP_19703442.1| ribonuclease Z [Escherichia coli KTE204]
gi|432476518|ref|ZP_19718516.1| ribonuclease Z [Escherichia coli KTE208]
gi|432518342|ref|ZP_19755530.1| ribonuclease Z [Escherichia coli KTE228]
gi|432538463|ref|ZP_19775365.1| ribonuclease Z [Escherichia coli KTE235]
gi|432632058|ref|ZP_19867984.1| ribonuclease Z [Escherichia coli KTE80]
gi|432641772|ref|ZP_19877606.1| ribonuclease Z [Escherichia coli KTE83]
gi|432666667|ref|ZP_19902248.1| ribonuclease Z [Escherichia coli KTE116]
gi|432775364|ref|ZP_20009635.1| ribonuclease Z [Escherichia coli KTE54]
gi|432887253|ref|ZP_20101327.1| ribonuclease Z [Escherichia coli KTE158]
gi|432913451|ref|ZP_20119148.1| ribonuclease Z [Escherichia coli KTE190]
gi|433019346|ref|ZP_20207561.1| ribonuclease Z [Escherichia coli KTE105]
gi|433053879|ref|ZP_20241058.1| ribonuclease Z [Escherichia coli KTE122]
gi|433068584|ref|ZP_20255373.1| ribonuclease Z [Escherichia coli KTE128]
gi|433159316|ref|ZP_20344153.1| ribonuclease Z [Escherichia coli KTE177]
gi|433179127|ref|ZP_20363526.1| ribonuclease Z [Escherichia coli KTE82]
gi|254808635|sp|B7N5N4.1|RBN_ECOLU RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|218432899|emb|CAR13793.1| binuclear zinc phosphodiesterase [Escherichia coli UMN026]
gi|300359254|gb|EFJ75124.1| ribonuclease Z [Escherichia coli MS 198-1]
gi|331059584|gb|EGI31561.1| ribonuclease Z [Escherichia coli TA143]
gi|345336424|gb|EGW68860.1| ribonuclease Z [Escherichia coli STEC_C165-02]
gi|373244785|gb|EHP64264.1| ribonuclease Z [Escherichia coli 4_1_47FAA]
gi|430875384|gb|ELB98926.1| ribonuclease Z [Escherichia coli KTE2]
gi|430925034|gb|ELC45707.1| ribonuclease Z [Escherichia coli KTE26]
gi|430955759|gb|ELC74541.1| ribonuclease Z [Escherichia coli KTE181]
gi|430988983|gb|ELD05452.1| ribonuclease Z [Escherichia coli KTE204]
gi|431005134|gb|ELD20342.1| ribonuclease Z [Escherichia coli KTE208]
gi|431050964|gb|ELD60640.1| ribonuclease Z [Escherichia coli KTE228]
gi|431069352|gb|ELD77681.1| ribonuclease Z [Escherichia coli KTE235]
gi|431170258|gb|ELE70452.1| ribonuclease Z [Escherichia coli KTE80]
gi|431181655|gb|ELE81517.1| ribonuclease Z [Escherichia coli KTE83]
gi|431200961|gb|ELE99679.1| ribonuclease Z [Escherichia coli KTE116]
gi|431317976|gb|ELG05745.1| ribonuclease Z [Escherichia coli KTE54]
gi|431416251|gb|ELG98738.1| ribonuclease Z [Escherichia coli KTE158]
gi|431439751|gb|ELH21084.1| ribonuclease Z [Escherichia coli KTE190]
gi|431530823|gb|ELI07499.1| ribonuclease Z [Escherichia coli KTE105]
gi|431569951|gb|ELI42880.1| ribonuclease Z [Escherichia coli KTE122]
gi|431583656|gb|ELI55651.1| ribonuclease Z [Escherichia coli KTE128]
gi|431677548|gb|ELJ43623.1| ribonuclease Z [Escherichia coli KTE177]
gi|431700947|gb|ELJ65871.1| ribonuclease Z [Escherichia coli KTE82]
Length = 305
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S ++ L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--IDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|418562635|ref|ZP_13127092.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21262]
gi|371973739|gb|EHO91087.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21262]
Length = 306
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 83/200 (41%), Gaps = 32/200 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FITH H DHI GLP ++SR KP T+ P IK V E+ +L LN
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYV----EMSMNLSESHLNY 114
Query: 177 DLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY-------LLRKKLKK-------Q 221
+ +++ + +D V +H IPS GY + + + LK +
Sbjct: 115 PITYIEIDDYLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKNIGLEPGPK 174
Query: 222 YIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGDT--TSEFMLNPRNADALRAKILI 275
Y +K + + D P VA GDT S + R+AD +++
Sbjct: 175 YQEVKSHDTFEHNGQVYQSKDFRGESKQGPIVAIFGDTKPCSNERVISRDAD-----VMV 229
Query: 276 TEATFLDDEMSIEHAQQHGH 295
EAT++D E + + H H
Sbjct: 230 HEATYIDGEKHLANNYHHSH 249
>gi|357009736|ref|ZP_09074735.1| ribonuclease Z [Paenibacillus elgii B69]
Length = 322
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 92/224 (41%), Gaps = 33/224 (14%)
Query: 106 IGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFE 164
I R P + + +FITH H DHI GLP ++SR P TI+ P I+E VE
Sbjct: 46 ILRAPVKISKLEKLFITHLHGDHIYGLPGLMSSRSYQGGDTPFTIYGPVGIREFVETALR 105
Query: 165 IHRSLGNVELNLDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLRKKLKKQY 222
I S ++ +V + + + D +V+ H + S GY I +K K
Sbjct: 106 ISDS--HLSYQTKIVEFEEKVEFVLYEDEQFIVKAAPLVHRVDSYGYRIEEKPQKGKLDA 163
Query: 223 IHLK------GKQIEKLKK---------SGVEITDIILSPE----VAFTGDT--TSEFML 261
LK G K+KK + +E + I P V GDT +
Sbjct: 164 AKLKELGIASGPLYGKIKKGEAVTLEDGTVLEASRFIGPPVPGRIVTILGDTQPCEHAVT 223
Query: 262 NPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
R AD +L+ EATF +D + A Q+ H+ + R A
Sbjct: 224 LARQAD-----VLVHEATFAEDRKEL--AMQYDHSTAMDAARTA 260
>gi|152993439|ref|YP_001359160.1| hypothetical protein SUN_1856 [Sulfurovum sp. NBC37-1]
gi|151425300|dbj|BAF72803.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 465
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 15/104 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKL------FEIHRSLGNV 172
VFITH H DHI LP + S KP ++ ++KE+++ L + I + N+
Sbjct: 47 VFITHTHFDHIVDLPFIIDSYFNCRTKPLKVY---ALKENLDTLKQYLFNWNISPNFANI 103
Query: 173 -----ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
E +L + ++ G+T + N I + K +H +P+ G+ +
Sbjct: 104 KHINNEFSLKFIPIEYGQTITVDN-IKMTAVKANHTVPTCGFKV 146
>gi|449128002|ref|ZP_21764272.1| ribonuclease Z [Treponema denticola SP33]
gi|448943334|gb|EMB24226.1| ribonuclease Z [Treponema denticola SP33]
Length = 308
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPS 154
FD G R R + N +FI+H H DHI GLP + + S + +P I PP
Sbjct: 35 FDCGEGTQVALRRLNLRWKRINAIFISHTHADHITGLPGLMMLSSQVDREEPLYIIGPPK 94
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGE---TYEMRNDIVVRPFKTHHVIPSQGYVI 211
+ E V E R + ++ +N +++ ++ E Y + VR F H P GY
Sbjct: 95 VAEYV----ETSRKVLDMYINYEIIVKEIKEPGIVYST-EEFQVRSFWLDHTKPCMGYTF 149
>gi|49483754|ref|YP_040978.1| hypothetical protein SAR1581 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|82751097|ref|YP_416838.1| metallo-beta-lactamase [Staphylococcus aureus RF122]
gi|257425627|ref|ZP_05602051.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 55/2053]
gi|257428288|ref|ZP_05604686.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430925|ref|ZP_05607305.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 68-397]
gi|257433614|ref|ZP_05609972.1| ribonuclease Z [Staphylococcus aureus subsp. aureus E1410]
gi|257436527|ref|ZP_05612571.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M876]
gi|258423158|ref|ZP_05686051.1| ribonuclease Z [Staphylococcus aureus A9635]
gi|282904084|ref|ZP_06311972.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C160]
gi|282905911|ref|ZP_06313766.1| ribonuclease Z [Staphylococcus aureus subsp. aureus Btn1260]
gi|282908821|ref|ZP_06316639.1| ribonuclease Z [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282911140|ref|ZP_06318942.1| ribonuclease Z [Staphylococcus aureus subsp. aureus WBG10049]
gi|282914309|ref|ZP_06322095.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M899]
gi|282916770|ref|ZP_06324528.1| ribonuclease Z [Staphylococcus aureus subsp. aureus D139]
gi|282919278|ref|ZP_06327013.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C427]
gi|282924603|ref|ZP_06332271.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C101]
gi|283770575|ref|ZP_06343467.1| ribonuclease Z [Staphylococcus aureus subsp. aureus H19]
gi|283958266|ref|ZP_06375717.1| ribonuclease Z [Staphylococcus aureus subsp. aureus A017934/97]
gi|293503386|ref|ZP_06667233.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 58-424]
gi|293510401|ref|ZP_06669107.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M809]
gi|293530940|ref|ZP_06671622.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M1015]
gi|295428080|ref|ZP_06820712.1| ribonuclease Z [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297590952|ref|ZP_06949590.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MN8]
gi|384547739|ref|YP_005736992.1| metallo-beta-lactamase [Staphylococcus aureus subsp. aureus ED133]
gi|384867523|ref|YP_005747719.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH60]
gi|387780598|ref|YP_005755396.1| hypothetical protein SARLGA251_14120 [Staphylococcus aureus subsp.
aureus LGA251]
gi|415682301|ref|ZP_11447617.1| probable metallo-beta-lactamase [Staphylococcus aureus subsp.
aureus CGS00]
gi|416841158|ref|ZP_11904220.1| metallo-beta-lactamase [Staphylococcus aureus O11]
gi|416848683|ref|ZP_11907877.1| metallo-beta-lactamase [Staphylococcus aureus O46]
gi|417887931|ref|ZP_12532050.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21195]
gi|417890145|ref|ZP_12534224.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21200]
gi|417896985|ref|ZP_12540928.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21235]
gi|418284064|ref|ZP_12896796.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21202]
gi|418308002|ref|ZP_12919669.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21194]
gi|418559026|ref|ZP_13123573.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21252]
gi|418564567|ref|ZP_13128988.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21264]
gi|418582431|ref|ZP_13146509.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1605]
gi|418597143|ref|ZP_13160676.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21342]
gi|418603369|ref|ZP_13166756.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21345]
gi|418889319|ref|ZP_13443452.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1524]
gi|418892234|ref|ZP_13446347.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1176]
gi|418898137|ref|ZP_13452207.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC341D]
gi|418901009|ref|ZP_13455065.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1214]
gi|418909355|ref|ZP_13463351.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG149]
gi|418917400|ref|ZP_13471359.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1267]
gi|418923185|ref|ZP_13477101.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1233]
gi|418982509|ref|ZP_13530217.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1242]
gi|418986176|ref|ZP_13533861.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1500]
gi|418994230|ref|ZP_13541865.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG290]
gi|56749415|sp|Q6GGJ4.1|RNZ_STAAR RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|123549237|sp|Q2YYA2.1|RNZ_STAAB RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|49241883|emb|CAG40576.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|82656628|emb|CAI81054.1| probable metallo-beta-lactamase [Staphylococcus aureus RF122]
gi|257271321|gb|EEV03467.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 55/2053]
gi|257275129|gb|EEV06616.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278355|gb|EEV08991.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 68-397]
gi|257281707|gb|EEV11844.1| ribonuclease Z [Staphylococcus aureus subsp. aureus E1410]
gi|257283878|gb|EEV14001.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M876]
gi|257846608|gb|EEV70629.1| ribonuclease Z [Staphylococcus aureus A9635]
gi|282313438|gb|EFB43833.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C101]
gi|282317088|gb|EFB47462.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C427]
gi|282319257|gb|EFB49609.1| ribonuclease Z [Staphylococcus aureus subsp. aureus D139]
gi|282321490|gb|EFB51815.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M899]
gi|282324835|gb|EFB55145.1| ribonuclease Z [Staphylococcus aureus subsp. aureus WBG10049]
gi|282327085|gb|EFB57380.1| ribonuclease Z [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282331203|gb|EFB60717.1| ribonuclease Z [Staphylococcus aureus subsp. aureus Btn1260]
gi|282595702|gb|EFC00666.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C160]
gi|283460722|gb|EFC07812.1| ribonuclease Z [Staphylococcus aureus subsp. aureus H19]
gi|283790415|gb|EFC29232.1| ribonuclease Z [Staphylococcus aureus subsp. aureus A017934/97]
gi|290920208|gb|EFD97274.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M1015]
gi|291095052|gb|EFE25317.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 58-424]
gi|291466765|gb|EFF09285.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M809]
gi|295128438|gb|EFG58072.1| ribonuclease Z [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297575838|gb|EFH94554.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MN8]
gi|298694788|gb|ADI98010.1| probable metallo-beta-lactamase [Staphylococcus aureus subsp.
aureus ED133]
gi|312438028|gb|ADQ77099.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH60]
gi|315195401|gb|EFU25788.1| probable metallo-beta-lactamase [Staphylococcus aureus subsp.
aureus CGS00]
gi|323439494|gb|EGA97215.1| metallo-beta-lactamase [Staphylococcus aureus O11]
gi|323441538|gb|EGA99189.1| metallo-beta-lactamase [Staphylococcus aureus O46]
gi|341840251|gb|EGS81771.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21235]
gi|341855838|gb|EGS96682.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21200]
gi|341856960|gb|EGS97787.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21195]
gi|344177700|emb|CCC88179.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|365164928|gb|EHM56758.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21202]
gi|365242384|gb|EHM83093.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21194]
gi|371975704|gb|EHO92996.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21264]
gi|371976376|gb|EHO93666.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21252]
gi|374393184|gb|EHQ64499.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21345]
gi|374395379|gb|EHQ66646.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21342]
gi|377702406|gb|EHT26728.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1214]
gi|377704220|gb|EHT28530.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1500]
gi|377704790|gb|EHT29099.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1242]
gi|377710841|gb|EHT35079.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1605]
gi|377730528|gb|EHT54595.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1176]
gi|377735144|gb|EHT59180.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1233]
gi|377744027|gb|EHT68005.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG290]
gi|377750574|gb|EHT74512.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1267]
gi|377752002|gb|EHT75926.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG149]
gi|377752827|gb|EHT76745.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1524]
gi|377761172|gb|EHT85048.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC341D]
Length = 306
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK V E+ +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYV----EMSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPIVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
T S + R+AD +++ EAT++D E + + H H
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHLANNYHHSH 249
>gi|403744689|ref|ZP_10953840.1| ribonuclease Z [Alicyclobacillus hesperidum URH17-3-68]
gi|403121867|gb|EJY56126.1| ribonuclease Z [Alicyclobacillus hesperidum URH17-3-68]
Length = 312
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 81/204 (39%), Gaps = 38/204 (18%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLF-----EIHRSLG 170
N +FITH H DHI GLP + SR P +I P ++ +E + +
Sbjct: 57 NRIFITHLHGDHIYGLPGMLGSRSFQAGSGPLSILGPYGLRTFLETAIATSGAHLSYAWD 116
Query: 171 NVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQ--- 221
EL +L ++ V YE + RP + H IPS GY I LRK L +
Sbjct: 117 VTELGNELQSVVVDGDYE----VTWRPLR--HGIPSYGYRIQERPFPGALRKDLLEAAGL 170
Query: 222 -----YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDT--TSEFMLNPRNADAL 269
Y +K Q L + + + P V GDT E + +NAD
Sbjct: 171 PPGPLYREIKSGQDVTLPNGHIIVAKNFIDPPEPGRIVTILGDTRPCDEAVTLAQNAD-- 228
Query: 270 RAKILITEATFLDDEMSIEHAQQH 293
I++ EAT+ + + QH
Sbjct: 229 ---IIVHEATYTAADADLAARHQH 249
>gi|334133630|ref|ZP_08507175.1| metallo-beta-lactamase domain protein [Paenibacillus sp. HGF7]
gi|333608843|gb|EGL20130.1| metallo-beta-lactamase domain protein [Paenibacillus sp. HGF7]
Length = 261
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 100 LKCAFDIGRCPTRAIQQNF--VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKE 157
L C + G RA ++ V ITH H DHIGGLP Y ++ ++ + +
Sbjct: 54 LDCGPNWGLQMERAGLRDLRHVLITHAHYDHIGGLPEYADLCRWLGIRGK-VYAAAEVVD 112
Query: 158 DVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKK 217
+ +F ++ NLD +A+D G ++ +RP+K H + + RK+
Sbjct: 113 RIRAIFPW------IDRNLDYIAVDEGFSF---GGWEIRPWKVTHGANGFSFALRFDRKE 163
>gi|242242776|ref|ZP_04797221.1| ribonuclease Z [Staphylococcus epidermidis W23144]
gi|416125248|ref|ZP_11595846.1| ribonuclease Z [Staphylococcus epidermidis FRI909]
gi|420174733|ref|ZP_14681181.1| ribonuclease Z [Staphylococcus epidermidis NIHLM061]
gi|420178202|ref|ZP_14684535.1| ribonuclease Z [Staphylococcus epidermidis NIHLM057]
gi|420180010|ref|ZP_14686270.1| ribonuclease Z [Staphylococcus epidermidis NIHLM053]
gi|420199438|ref|ZP_14705116.1| ribonuclease Z [Staphylococcus epidermidis NIHLM031]
gi|242233912|gb|EES36224.1| ribonuclease Z [Staphylococcus epidermidis W23144]
gi|319400845|gb|EFV89064.1| ribonuclease Z [Staphylococcus epidermidis FRI909]
gi|394244637|gb|EJD89972.1| ribonuclease Z [Staphylococcus epidermidis NIHLM061]
gi|394246828|gb|EJD92080.1| ribonuclease Z [Staphylococcus epidermidis NIHLM057]
gi|394251442|gb|EJD96527.1| ribonuclease Z [Staphylococcus epidermidis NIHLM053]
gi|394272220|gb|EJE16689.1| ribonuclease Z [Staphylococcus epidermidis NIHLM031]
Length = 306
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVI 211
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYSITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRI 150
>gi|339010408|ref|ZP_08642978.1| ribonuclease Z [Brevibacillus laterosporus LMG 15441]
gi|338772563|gb|EGP32096.1| ribonuclease Z [Brevibacillus laterosporus LMG 15441]
Length = 314
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 31/200 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP--TIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FITH H DH+ GL +ASR L + T++ P I E V+ + I S +++ L
Sbjct: 58 IFITHLHGDHLYGLIGMLASRSLRGAETGGITLYGPKGIDEYVQAIMRI--SPVHLQYPL 115
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQI 230
+ ++ G YE + IVV K H +P+ Y + + +L K+ KG
Sbjct: 116 IIKVVEEGIIYE-DDTIVVEAAKVKHRVPAFAYSMTEKPRPGAFKIELAKEAGIPKGPMY 174
Query: 231 EKLKKSG-VEI--------TDIILSPE----VAFTGDTT-SEFMLNPRNADALRAKILIT 276
+LK G V++ D + P+ VAF+GDT + M+ A A +L+
Sbjct: 175 AQLKAGGTVQLEDGRVFHGKDFVHPPQPGLKVAFSGDTIPCQNMVRL----AQGADMLVH 230
Query: 277 EATFLDDEMSIEHAQQHGHT 296
E+T++ + E A++ GH+
Sbjct: 231 ESTYVHQHL--ELAERSGHS 248
>gi|218548281|ref|YP_002382072.1| ribonuclease Z [Escherichia fergusonii ATCC 35469]
gi|218355822|emb|CAQ88435.1| binuclear zinc phosphodiesterase [Escherichia fergusonii ATCC
35469]
Length = 320
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 43/226 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + +++P TI+ P I+E VE + S + LD
Sbjct: 75 IFISHLHGDHLFGLPGLLCSRSMAGSMQPLTIYGPKGIQEFVETTLRLSSSW--TDYPLD 132
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGK 228
++ + GE + +R V + H + G+ I L K LK + G
Sbjct: 133 VIEISAGEILDDGLRK---VTAYPMEHPLECYGFRIEEHEKPGALDAKGLKAAGVQ-PGP 188
Query: 229 QIEKLK-------KSGVEITDI-ILSPE-----VAFTGDT--TSEFMLNPRNADALRAKI 273
+ LK + G +I L+P +A GDT + R+AD +
Sbjct: 189 LFQDLKAGKTVTLEDGRQINGADYLAPATPGKVLAIFGDTAPCDNALELARHAD-----V 243
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEDIRQAVLKLQSKVSAKVV 318
+I EAT +MS+E A GH S + A L ++ VS ++
Sbjct: 244 MIHEATL---DMSMEAKANSRGH---SSTCQAATLAREAGVSKLII 283
>gi|418327933|ref|ZP_12939065.1| ribonuclease Z [Staphylococcus epidermidis 14.1.R1.SE]
gi|418614695|ref|ZP_13177657.1| ribonuclease Z [Staphylococcus epidermidis VCU118]
gi|418630602|ref|ZP_13193083.1| ribonuclease Z [Staphylococcus epidermidis VCU128]
gi|418633189|ref|ZP_13195606.1| ribonuclease Z [Staphylococcus epidermidis VCU129]
gi|420190119|ref|ZP_14696063.1| ribonuclease Z [Staphylococcus epidermidis NIHLM037]
gi|420204420|ref|ZP_14709978.1| ribonuclease Z [Staphylococcus epidermidis NIHLM015]
gi|420234665|ref|ZP_14739225.1| ribonuclease Z [Staphylococcus epidermidis NIH051475]
gi|365232492|gb|EHM73488.1| ribonuclease Z [Staphylococcus epidermidis 14.1.R1.SE]
gi|374819231|gb|EHR83359.1| ribonuclease Z [Staphylococcus epidermidis VCU118]
gi|374837792|gb|EHS01355.1| ribonuclease Z [Staphylococcus epidermidis VCU128]
gi|374840008|gb|EHS03515.1| ribonuclease Z [Staphylococcus epidermidis VCU129]
gi|394259010|gb|EJE03880.1| ribonuclease Z [Staphylococcus epidermidis NIHLM037]
gi|394273430|gb|EJE17861.1| ribonuclease Z [Staphylococcus epidermidis NIHLM015]
gi|394303908|gb|EJE47318.1| ribonuclease Z [Staphylococcus epidermidis NIH051475]
Length = 306
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVI 211
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYSITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRI 150
>gi|379021285|ref|YP_005297947.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M013]
gi|386729204|ref|YP_006195587.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 71193]
gi|387602845|ref|YP_005734366.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ST398]
gi|404478852|ref|YP_006710282.1| hypothetical protein C248_1544 [Staphylococcus aureus 08BA02176]
gi|417905435|ref|ZP_12549246.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21269]
gi|418310092|ref|ZP_12921642.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21331]
gi|418978226|ref|ZP_13526027.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus DR10]
gi|283470783|emb|CAQ49994.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ST398]
gi|341843711|gb|EGS84933.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21269]
gi|359830594|gb|AEV78572.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus M013]
gi|365237549|gb|EHM78395.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21331]
gi|379993842|gb|EIA15287.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus DR10]
gi|384230497|gb|AFH69744.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus 71193]
gi|404440341|gb|AFR73534.1| hypothetical protein C248_1544 [Staphylococcus aureus 08BA02176]
Length = 306
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK V E+ +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYV----EMSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPIVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
T S + R+AD +++ EAT++D E + + H H
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHLANNYHHSH 249
>gi|449109001|ref|ZP_21745641.1| ribonuclease Z [Treponema denticola ATCC 33520]
gi|449119686|ref|ZP_21756081.1| ribonuclease Z [Treponema denticola H1-T]
gi|449122076|ref|ZP_21758422.1| ribonuclease Z [Treponema denticola MYR-T]
gi|449123974|ref|ZP_21760294.1| ribonuclease Z [Treponema denticola OTK]
gi|448943368|gb|EMB24259.1| ribonuclease Z [Treponema denticola OTK]
gi|448948989|gb|EMB29815.1| ribonuclease Z [Treponema denticola H1-T]
gi|448949517|gb|EMB30342.1| ribonuclease Z [Treponema denticola MYR-T]
gi|448960440|gb|EMB41152.1| ribonuclease Z [Treponema denticola ATCC 33520]
Length = 308
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPS 154
FD G R R + N +FI+H H DHI GLP + + S + +P I PP
Sbjct: 35 FDCGEGTQVALRRLNLRWKRINAIFISHTHADHITGLPGLLMLSSQVDREEPLYIIGPPK 94
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGE--TYEMRNDIVVRPFKTHHVIPSQGYVI 211
+ E V E R + ++ +N +++ ++ E + VR F H P GY
Sbjct: 95 VAEYV----ETSRKVLDMYINYEIIVKEIKEPGVVYSTEEFQVRSFWLDHTKPCMGYTF 149
>gi|421874708|ref|ZP_16306310.1| ribonuclease Z [Brevibacillus laterosporus GI-9]
gi|372456383|emb|CCF15859.1| ribonuclease Z [Brevibacillus laterosporus GI-9]
Length = 314
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 31/200 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP--TIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FITH H DH+ GL +ASR L + T++ P I E V+ + I S +++ L
Sbjct: 58 IFITHLHGDHLYGLIGMLASRSLRGAETGGITLYGPKGIDEYVQAIMRI--SPVHLQYPL 115
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQI 230
+ ++ G YE + IVV K H +P+ Y + + +L K+ KG
Sbjct: 116 IIKVVEEGIIYE-DDTIVVEAAKVKHRVPAFAYSMTEKPRPGAFKIELAKEAGIPKGPMY 174
Query: 231 EKLKKSG-VEI--------TDIILSPE----VAFTGDTT-SEFMLNPRNADALRAKILIT 276
+LK G V++ D + P+ VAF+GDT + M+ A A +L+
Sbjct: 175 AQLKAGGTVQLEDGRVFHGKDFVHPPQPGLKVAFSGDTIPCQNMVRL----AQGADMLVH 230
Query: 277 EATFLDDEMSIEHAQQHGHT 296
E+T++ + E A++ GH+
Sbjct: 231 ESTYVHQHL--ELAERSGHS 248
>gi|449105132|ref|ZP_21741840.1| ribonuclease Z [Treponema denticola ASLM]
gi|451969444|ref|ZP_21922673.1| ribonuclease Z [Treponema denticola US-Trep]
gi|448967368|gb|EMB48006.1| ribonuclease Z [Treponema denticola ASLM]
gi|451701541|gb|EMD56002.1| ribonuclease Z [Treponema denticola US-Trep]
Length = 308
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPS 154
FD G R R + N +FI+H H DHI GLP + + S + +P I PP
Sbjct: 35 FDCGEGTQVALRRLNLRWKRINAIFISHTHADHITGLPGLLMLSSQVDREEPLYIIGPPK 94
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGE--TYEMRNDIVVRPFKTHHVIPSQGYVI 211
+ E V E R + ++ +N +++ ++ E + VR F H P GY
Sbjct: 95 VAEYV----ETSRKVLDMYINYEIIVKEIKEPGVVYSTEEFQVRSFWLDHTKPCMGYTF 149
>gi|449104881|ref|ZP_21741618.1| ribonuclease Z [Treponema denticola AL-2]
gi|448962367|gb|EMB43057.1| ribonuclease Z [Treponema denticola AL-2]
Length = 308
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPS 154
FD G R R + N +FI+H H DHI GLP + + S + +P I PP
Sbjct: 35 FDCGEGTQVALRRLNLRWKRINAIFISHTHADHITGLPGLLMLSSQVDREEPLYIIGPPK 94
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGE--TYEMRNDIVVRPFKTHHVIPSQGYVI 211
+ E V E R + ++ +N +++ ++ E + VR F H P GY
Sbjct: 95 VAEYV----ETSRKVLDMYINYEIIVKEIKEPGVVYSTEEFQVRSFWLDHTKPCMGYTF 149
>gi|296269111|ref|YP_003651743.1| beta-lactamase domain-containing protein [Thermobispora bispora DSM
43833]
gi|296091898|gb|ADG87850.1| beta-lactamase domain protein [Thermobispora bispora DSM 43833]
Length = 327
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 22/195 (11%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
++ +TH H DH GLP + N+ P P+ E+ + + + E+ +
Sbjct: 57 TWICVTHFHGDHCLGLPGVIQRIARDNVPHPVQVAYPAAGEEYWRRLRHASAFADTEVIV 116
Query: 177 DL-VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------YLLRKKLKKQYIHLKGKQ 229
V+ D + RP H IPS GY I +L +L ++ IH G
Sbjct: 117 PRPVSGDEARLPAGPLTLTARPLS--HPIPSYGYRIEEPPGRTMLPAELARRGIH--GPM 172
Query: 230 IEKLKKSG-VEITD--IILSPEVAFTGDTTS-EFMLNPRNADALRA-----KILITEATF 280
I +L++ G + + D ++ E + S F+++ R DA A +L+ EATF
Sbjct: 173 IGELQRKGSITVPDGSVVTLEECSVPRPGQSFAFVMDTRLCDAAFALADGVDLLVVEATF 232
Query: 281 LDDEMSIEHAQQHGH 295
L E S+ A +GH
Sbjct: 233 LSAEASL--AAHYGH 245
>gi|296111867|ref|YP_003622249.1| metal-dependent hydrolase of the beta-lactamase superfamily III()
[Leuconostoc kimchii IMSNU 11154]
gi|295833399|gb|ADG41280.1| metal-dependent hydrolase of the beta-lactamase superfamily
III(putative) [Leuconostoc kimchii IMSNU 11154]
Length = 314
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 38/224 (16%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + + FI+H H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTIRPRKVEKIFISHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI- 211
+KE V+ I + + + L G +E + V+ K H I + GY +
Sbjct: 96 KGVKEYVQTALRISET--RLSYPIVYAELKEGVIFEDKTFRVIGA-KMRHRIETWGYRVE 152
Query: 212 ------YLLRKKLKKQYI-------HLKGKQIEKLKKSGV-EITDIILSPEVAFTGDTTS 257
LL KL+++ I LK ++ L V + D I + +
Sbjct: 153 EKDHPGELLVDKLRQENIPSGPIFGQLKAGKVVTLPDGRVLDGQDYIGASQKG----RVV 208
Query: 258 EFMLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHT 296
F+L+ R D A A +L+ E+T+ E + A+ H H+
Sbjct: 209 TFILDTRPNDNVEILADHADVLVHESTYGAGEEEAKMARAHAHS 252
>gi|420373682|ref|ZP_14873747.1| ribonuclease Z [Shigella flexneri 1235-66]
gi|391317016|gb|EIQ74399.1| ribonuclease Z [Shigella flexneri 1235-66]
Length = 305
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE + I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETVLRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|401675680|ref|ZP_10807669.1| ribonuclease Z [Enterobacter sp. SST3]
gi|400217063|gb|EJO47960.1| ribonuclease Z [Enterobacter sp. SST3]
Length = 305
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + N P TI+ P I+E VE + S + L+
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNANPLTIYGPAGIREFVETTLRLSGSW--TDYPLE 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + G ++ D V +H + GY I
Sbjct: 118 VVEISEGLIFD-DGDYKVSAQPLNHPVECYGYRI 150
>gi|417647087|ref|ZP_12296936.1| ribonuclease Z [Staphylococcus epidermidis VCU144]
gi|329725436|gb|EGG61919.1| ribonuclease Z [Staphylococcus epidermidis VCU144]
Length = 306
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVI 211
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYTITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRI 150
>gi|308069322|ref|YP_003870927.1| ribonuclease Z [Paenibacillus polymyxa E681]
gi|305858601|gb|ADM70389.1| Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Paenibacillus polymyxa E681]
Length = 309
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 28/210 (13%)
Query: 105 DIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLF 163
++ R P + + +FITH H DH+ GLP ++SR P T++ PP I+E +E
Sbjct: 45 EVLRSPLKLSRLEKIFITHLHGDHLFGLPGLLSSRAYQGGTTPLTVYGPPGIQEYIELSL 104
Query: 164 EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKK 217
I +S N +L+ + G V H I S GY + L ++
Sbjct: 105 GISQSRINYQLH---IVEHTGGVLFDDGQFRVESALLDHRIDSYGYRVVEMDKPGKLNQE 161
Query: 218 LKKQYIHLKGKQIEKLKKS-GVEI--------TDIILSPE----VAFTGDTTSEFMLNPR 264
L ++Y G KLK+ VE+ D++ SP+ + GDT P
Sbjct: 162 LLERYGIKPGPVYGKLKRGESVEVEGGVILHPQDVLGSPKKGRIITILGDTRP----CPN 217
Query: 265 NAD-ALRAKILITEATFLDDEMSIEHAQQH 293
A A +++ EATFL + + H
Sbjct: 218 TVVLAQDATVVVHEATFLHELADTAYEYHH 247
>gi|42527456|ref|NP_972554.1| ribonuclease Z [Treponema denticola ATCC 35405]
gi|449111539|ref|ZP_21748132.1| ribonuclease Z [Treponema denticola ATCC 33521]
gi|449113648|ref|ZP_21750134.1| ribonuclease Z [Treponema denticola ATCC 35404]
gi|56749439|sp|Q73LB4.1|RNZ_TREDE RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|41818041|gb|AAS12465.1| metallo-beta-lactamase family protein [Treponema denticola ATCC
35405]
gi|448957512|gb|EMB38253.1| ribonuclease Z [Treponema denticola ATCC 33521]
gi|448958343|gb|EMB39075.1| ribonuclease Z [Treponema denticola ATCC 35404]
Length = 308
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPS 154
FD G R R + N +FI+H H DHI GLP + + S + +P I PP
Sbjct: 35 FDCGEGTQVALRRLNLRWKRINAIFISHTHADHITGLPGLLMLSSQVDREEPLYIIGPPK 94
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDV---GETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+ E V E R + ++ +N +++ ++ G Y + VR F H P GY
Sbjct: 95 VAEYV----ETSRKVLDMYINYEIIVKEIREPGVVYST-EEFQVRSFWLDHTKPCMGYTF 149
>gi|255535073|ref|YP_003095444.1| ribonuclease Z [Flavobacteriaceae bacterium 3519-10]
gi|255341269|gb|ACU07382.1| Ribonuclease Z [Flavobacteriaceae bacterium 3519-10]
Length = 305
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 29/209 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNL- 176
+FI+H H DH GLP +AS L + P I+ P IKE +E +F I + EL
Sbjct: 58 IFISHLHGDHCFGLPGLIASFRLLGRETPLHIYGPKGIKEMLETIFRITETHKGFELVYH 117
Query: 177 DLVALDVGETYE-MRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL----KGKQIE 231
+L + + +E R ++ P K H + G YL R+K K++++++ K +IE
Sbjct: 118 ELESKQSEKIFEDKRVEVFTIPLK--HRVYCNG---YLFREKPKERHLNMQEISKYPEIE 172
Query: 232 KLKKSGVEI-TDIILSPEVAFTGDTTS---------EFMLNPRNADAL-----RAKILIT 276
+++ D +L+ T + F + R +++ +L
Sbjct: 173 TCDYQNIKLGKDFVLNDGYTLKNATLTTDPSKSVSYAFCSDTRYIESIVPIIENVDVLYH 232
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
E+TFL D E A GHT E R A
Sbjct: 233 ESTFLHDLK--EMADYTGHTTALEAARIA 259
>gi|448546343|ref|ZP_21626507.1| metal dependent hydrolase [Haloferax sp. ATCC BAA-646]
gi|448548330|ref|ZP_21627597.1| metal dependent hydrolase [Haloferax sp. ATCC BAA-645]
gi|448557524|ref|ZP_21632713.1| metal dependent hydrolase [Haloferax sp. ATCC BAA-644]
gi|445702796|gb|ELZ54736.1| metal dependent hydrolase [Haloferax sp. ATCC BAA-646]
gi|445714081|gb|ELZ65848.1| metal dependent hydrolase [Haloferax sp. ATCC BAA-644]
gi|445714425|gb|ELZ66187.1| metal dependent hydrolase [Haloferax sp. ATCC BAA-645]
Length = 248
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
V +TH HLDH+ L V +R L I P +E VE LF++H L LD+
Sbjct: 56 VLLTHHHLDHVSDLTALVKARWLAGADSLEIVGPEGTEELVEGLFDVHDYLKG---RLDV 112
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
+VG T V F+ H +P+ Y
Sbjct: 113 QVREVGPTEFGVAGFDVLGFEVRHSMPTLAY 143
>gi|375088368|ref|ZP_09734708.1| ribonuclease Z [Dolosigranulum pigrum ATCC 51524]
gi|374562406|gb|EHR33736.1| ribonuclease Z [Dolosigranulum pigrum ATCC 51524]
Length = 312
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N VFITH H DHI GLP +++SR + P TI+ P IK V L + S V
Sbjct: 57 NKVFITHMHGDHIYGLPGFLSSRSFQGGEDPLTIYGPKGIKHFV--LSTLKLSHTRVSYR 114
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
L V G+ + VR + +H + + G+ I
Sbjct: 115 LKFVEFTDGDVLMDTDYCTVRVERLNHGVDAYGFRI 150
>gi|385332373|ref|YP_005886324.1| ribonuclease Z [Marinobacter adhaerens HP15]
gi|311695523|gb|ADP98396.1| ribonuclease Z [Marinobacter adhaerens HP15]
Length = 359
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 105 DIGRCPTRAIQQ-NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155
D GR P R+ Q +FITH H DHIGG ++ SR Y P +F PP +
Sbjct: 67 DTGRMPLRSAHQVTDIFITHCHADHIGGFMWFLRSRIGY-FPPCRLFGPPGL 117
>gi|336234790|ref|YP_004587406.1| ribonuclease Z [Geobacillus thermoglucosidasius C56-YS93]
gi|335361645|gb|AEH47325.1| Ribonuclease Z [Geobacillus thermoglucosidasius C56-YS93]
Length = 348
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 28/205 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P T++ P I+ +E + + ++ +L
Sbjct: 60 IFITHLHGDHIFGLPGLLGSRSFQGGETPLTVYGPKGIQTFIETSLSVSST--RLKYDLQ 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK---------Q 221
+V ++ G +E +V + H I S G+ + LL KL+ Q
Sbjct: 118 IVEIEEGIIFEDERFLVTAK-QLDHGILSYGFRVVEKDLPGTLLVDKLQALGIRPGPIYQ 176
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITE 277
I L GK ++ + ++ + P+ VA GDT A A +L+ E
Sbjct: 177 QIKL-GKMVQLEDGTVIDGRHFVGPPQKGRIVAILGDTR---YCEASVELAAEADVLVHE 232
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEDI 302
ATF ++ ++ H H T + ++
Sbjct: 233 ATFAREDSALAHDYFHSTTAQAAEV 257
>gi|401827835|ref|XP_003888210.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
gi|392999410|gb|AFM99229.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
Length = 496
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 43/173 (24%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN----LKPPTIFVPPSIKEDVEKLF-----EIHRSL 169
V I+H HLDH G LP + G YN + PT V P + +D K+ I
Sbjct: 61 VIISHFHLDHCGALPYFTEVCG-YNGPIYMTLPTKEVCPVLLDDFRKIVGAKGDNIFSYQ 119
Query: 170 GNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQ 229
V + + + ETY+ D + P+ HV+ + + +
Sbjct: 120 DIVNCMKKVTTISMSETYKHDEDFYITPYYAGHVLGAAMFHV------------------ 161
Query: 230 IEKLKKSGVEITDIILSPEVAFTGD--TTSEFMLNPRNADALRAKILITEATF 280
++ V +TGD TT + L P + +R +LITE+T+
Sbjct: 162 -------------VVGDQSVVYTGDYSTTPDKHLGPASIKCVRPDLLITESTY 201
>gi|329297123|ref|ZP_08254459.1| ribonuclease Z [Plautia stali symbiont]
Length = 303
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 32/200 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L +P T++ P +++ V+ + S L+
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSIAGLTEPVTLYGPKGLRQFVDTALSLSGSYTGYP--LE 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+V ++ G + + V + +HV+ GY I +L +LK + + +G
Sbjct: 116 IVEIEAGPVLD-NGEFRVIAYALNHVVECYGYRIEQHDKPGFLDAPRLKAEGVP-RGPWY 173
Query: 231 EKLKKS-------GVEITDI-ILSPE-----VAFTGDTT-SEFMLNPRNADALRAKILIT 276
+ LK+ G EI L P +A GDT +E L A A +++
Sbjct: 174 QDLKQGKRITLEDGREINGADYLGPATKGKVLAIFGDTGPTEVALQL----AANADVMVH 229
Query: 277 EATFLDDEMSIEHAQQHGHT 296
E T + +E A GH+
Sbjct: 230 ETTL--EAAMVEKANGRGHS 247
>gi|73668942|ref|YP_304957.1| metallo-beta-lactamase [Methanosarcina barkeri str. Fusaro]
gi|72396104|gb|AAZ70377.1| metallo-beta-lactamase [Methanosarcina barkeri str. Fusaro]
Length = 447
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 40/198 (20%)
Query: 104 FDIGRCPTRAIQQNF------VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPS--- 154
++G P I + + THGHLDHIG +P +A R YN P I P +
Sbjct: 57 IEMGAIPDDTIMKEINGTVRAIVCTHGHLDHIGAIP-KLAHR--YN--APIISTPYTTAL 111
Query: 155 IKEDV--EKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQ----- 207
IK+ + E+ FE+ ++ L+ G TY++ DI + H I
Sbjct: 112 IKQQIEAERKFEVCNR---------VIPLNAGGTYQVTEDISIEFINVQHSIIDCVLAAV 162
Query: 208 ----GYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVE--ITDIILSPEVAFTGDTTSEFML 261
G V+Y KL + + E+LK G E I I+ S +G T SE +
Sbjct: 163 HTPIGAVLYACDFKLDRTPTMGEAPDFERLKSLGKEGVIAMIVESTNAGRSGKTPSEKIA 222
Query: 262 NPRNADALRAKILITEAT 279
D +R +L TE +
Sbjct: 223 K----DMVRDVLLGTEES 236
>gi|372275851|ref|ZP_09511887.1| ribonuclease Z [Pantoea sp. SL1_M5]
gi|390436244|ref|ZP_10224782.1| ribonuclease Z [Pantoea agglomerans IG1]
Length = 303
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L P T++ P +K VE I S + L
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTTPMTVYGPRGLKTFVETALSISGSY--TDYPLT 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V ++ G T + + + + H + GY I
Sbjct: 116 IVEIEAGWTLD-DGEFRISAWPLSHPVECFGYRI 148
>gi|417643199|ref|ZP_12293259.1| ribonuclease Z [Staphylococcus warneri VCU121]
gi|445059596|ref|YP_007385000.1| ribonuclease Z [Staphylococcus warneri SG1]
gi|330685978|gb|EGG97601.1| ribonuclease Z [Staphylococcus epidermidis VCU121]
gi|443425653|gb|AGC90556.1| ribonuclease Z [Staphylococcus warneri SG1]
Length = 306
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 96/238 (40%), Gaps = 43/238 (18%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVIY 212
I +K E +L LN + +++ E+ N +V+ +H I S GY I
Sbjct: 96 GI----QKYIETTLTLSESHLNYPITYIEIDESLNYHHNGFIVQAEMLNHGIKSFGYRIE 151
Query: 213 LLRKKLKKQYIHLKGKQIE------------------KLKKSGVEITDIILSPEVAFTGD 254
LK +E K+ +S + P VA GD
Sbjct: 152 TPTTPGTIDVDALKAIGLEPGPKYQEVKTNNTFEFNGKVYQSDEFKGEAKSGPVVAIFGD 211
Query: 255 TT---SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH-THLSEDIRQAVLK 308
T +E ++ A A I++ EAT+++ E ++ ++ H H + IRQA +K
Sbjct: 212 TKPCPNEHII------ANEADIMVHEATYIEGEKTLANSYHHSHIDDVFNLIRQANVK 263
>gi|424815675|ref|ZP_18240826.1| ribonuclease Z [Escherichia fergusonii ECD227]
gi|325496695|gb|EGC94554.1| ribonuclease Z [Escherichia fergusonii ECD227]
Length = 305
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 43/226 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + +++P TI+ P I+E VE + S + LD
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMAGSMQPLTIYGPKGIQEFVETTLRLSSSW--TDYPLD 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGK 228
++ + GE + +R V + H + G+ I L K LK + G
Sbjct: 118 VIEISAGEILDDGLRK---VTAYPMEHPLECYGFRIEEHEKPGALDAKGLKAAGVQ-PGP 173
Query: 229 QIEKLK-------KSGVEITDI-ILSPE-----VAFTGDT--TSEFMLNPRNADALRAKI 273
+ LK + G +I L+P +A GDT + R+AD +
Sbjct: 174 LFQDLKAGKTVTLEDGRQINGADYLAPATPGKVLAIFGDTAPCDNALELARHAD-----V 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEDIRQAVLKLQSKVSAKVV 318
+I EAT +MS+E A GH S + A L ++ VS ++
Sbjct: 229 MIHEATL---DMSMEAKANSRGH---SSTCQAATLAREAGVSKLII 268
>gi|229163080|ref|ZP_04291036.1| Ribonuclease Z [Bacillus cereus R309803]
gi|228620486|gb|EEK77356.1| Ribonuclease Z [Bacillus cereus R309803]
Length = 307
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 97/228 (42%), Gaps = 42/228 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V ++ T N+ V + H I GY I LL KL + +
Sbjct: 117 VVEIEEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDKLLELGVKPGPIFK 176
Query: 224 HLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK G+ +E + + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTMLNGKDFIGPPQKGKIITILGDT--------RYCEASRELAQDADV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
L+ EATF ++ +Q H + +QA + + +AK + LT
Sbjct: 229 LVHEATFAAED------EQQAHDYFHSTSKQAA-SIALQANAKRLILT 269
>gi|21283187|ref|NP_646275.1| hypothetical protein MW1458 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486342|ref|YP_043563.1| hypothetical protein SAS1444 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|297207776|ref|ZP_06924211.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|300911857|ref|ZP_07129300.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH70]
gi|418934476|ref|ZP_13488298.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC128]
gi|418988572|ref|ZP_13536244.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1835]
gi|448740667|ref|ZP_21722643.1| ribonuclease Z [Staphylococcus aureus KT/314250]
gi|41017562|sp|Q8NWE6.1|RNZ_STAAW RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|56749386|sp|Q6G960.1|RNZ_STAAS RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|21204627|dbj|BAB95323.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244785|emb|CAG43221.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|296887793|gb|EFH26691.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|300886103|gb|EFK81305.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH70]
gi|377717665|gb|EHT41840.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1835]
gi|377770570|gb|EHT94331.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC128]
gi|445548634|gb|ELY16884.1| ribonuclease Z [Staphylococcus aureus KT/314250]
Length = 306
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK V E+ +L LN + +++ + +D V +H +PS GY +
Sbjct: 96 GIKAYV----EMSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGVPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
T S + R+AD +++ EAT++D E + + H H
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHLANNYHHSH 249
>gi|55379160|ref|YP_137010.1| metallo-beta-lactamase-like [Haloarcula marismortui ATCC 43049]
gi|448638251|ref|ZP_21676224.1| ribonuclease Z [Haloarcula sinaiiensis ATCC 33800]
gi|448655150|ref|ZP_21682002.1| ribonuclease Z [Haloarcula californiae ATCC 33799]
gi|74552598|sp|Q5UZJ9.1|RNZ_HALMA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|55231885|gb|AAV47304.1| metallo-beta-lactamase-like [Haloarcula marismortui ATCC 43049]
gi|445763500|gb|EMA14687.1| ribonuclease Z [Haloarcula sinaiiensis ATCC 33800]
gi|445765599|gb|EMA16737.1| ribonuclease Z [Haloarcula californiae ATCC 33799]
Length = 311
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 37/232 (15%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + + I P
Sbjct: 35 FDCGEGTQRQMMRYGTGFAIDHLFVTHLHGDHVLGIPGLLQTWDFNERERAIAIHTPAGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ ++++L + + + + + ++ V+ G+ R++ +R +T H S GYV+
Sbjct: 95 RGNIKQLIQANGTTPSFPVRINEVS--AGDVVLDRSEYEIRAIETAHRCASVGYVLDEDD 152
Query: 212 ---YLLRKKLKKQYIHLKGKQIEKLKKS-GVEITDIILSPEV-----------AFTGDT- 255
R+K ++++ G + KL + VE + PE +TGDT
Sbjct: 153 RKGKFDREKAEEEFGIPPGPKYSKLHRGEAVEHEGETIQPEAVVGPARPGRRFVYTGDTL 212
Query: 256 -TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-RQA 305
T + +AD +L+ +ATF +D A H + D+ RQA
Sbjct: 213 PTESVIEASEDAD-----LLVHDATFAEDRKERAKATAHSTAREAADVARQA 259
>gi|417231974|ref|ZP_12033372.1| ribonuclease BN [Escherichia coli 5.0959]
gi|386204973|gb|EII09484.1| ribonuclease BN [Escherichia coli 5.0959]
Length = 311
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 VFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|417788529|ref|ZP_12436212.1| ribonuclease Z [Lactobacillus salivarius NIAS840]
gi|334308706|gb|EGL99692.1| ribonuclease Z [Lactobacillus salivarius NIAS840]
Length = 317
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 119 VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR G + P TI+ P I V ++ ++ + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISNFVNISLKVSQTKLSYELN 118
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
V L+ + V +K H I GY I
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRI 152
>gi|301055288|ref|YP_003793499.1| hypothetical protein BACI_c37490, partial [Bacillus cereus biovar
anthracis str. CI]
gi|300377457|gb|ADK06361.1| N-terminla part of metallo-beta-lactamase family protein [Bacillus
cereus biovar anthracis str. CI]
Length = 317
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|109897202|ref|YP_660457.1| beta-lactamase-like protein [Pseudoalteromonas atlantica T6c]
gi|109699483|gb|ABG39403.1| beta-lactamase-like protein [Pseudoalteromonas atlantica T6c]
Length = 328
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLF 163
VFI+H H DH GGLP ++ R N T++ PP IKE V+ +F
Sbjct: 86 VFISHLHFDHTGGLPALLSLRWQVNAGNELTVYGPPGIKETVDGIF 131
>gi|384134378|ref|YP_005517092.1| ribonuclease Z [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339288463|gb|AEJ42573.1| ribonuclease Z [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 313
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 97/242 (40%), Gaps = 42/242 (17%)
Query: 104 FDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKL 162
FD P R + VFITH H DHI GLP +++R N+ P ++ P I+ V
Sbjct: 47 FDAPFGPNRV---DRVFITHLHGDHIFGLPGLLSTRSFPENVGPLQLYGPAGIRAFVRAT 103
Query: 163 FEIHRSLGNVELNLDLVALDVGETYEMRNDI-VVRPFKTHHVIPSQGYVI--YLLRKKLK 219
++ ++ ++ + E R + VR H IPS GY I +L
Sbjct: 104 LDLSQT--HLSYAIQFHEWTSPEPEPFREGLYTVRAALLDHAIPSYGYRIEEAPFPGRLH 161
Query: 220 KQYIHLKGKQIEKLK---KSGVEIT----------DIILSPE----VAFTGDTTSEFMLN 262
+ + +G Q L K+G ++T D + E +A GDT
Sbjct: 162 AEQLRAEGLQPSPLWARLKAGEDVTLPDGRRLRAADFVDPAEPGRVIAILGDT------R 215
Query: 263 PRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVP 319
P A A A L+ EATFLD + A H RQA ++ + AK +
Sbjct: 216 PCKAAVELARGADCLVHEATFLDRHAHLASAFFH------STARQAA-EIAREAGAKCLI 268
Query: 320 LT 321
LT
Sbjct: 269 LT 270
>gi|154502856|ref|ZP_02039916.1| hypothetical protein RUMGNA_00676 [Ruminococcus gnavus ATCC 29149]
gi|336433529|ref|ZP_08613347.1| ribonuclease Z [Lachnospiraceae bacterium 2_1_58FAA]
gi|153796395|gb|EDN78815.1| ribonuclease Z [Ruminococcus gnavus ATCC 29149]
gi|336016144|gb|EGN45937.1| ribonuclease Z [Lachnospiraceae bacterium 2_1_58FAA]
Length = 301
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 97/208 (46%), Gaps = 30/208 (14%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ + TH H DHI GLP + + G + K P + P + +E++ R + EL
Sbjct: 55 DVICFTHYHGDHISGLPGLLLTMGNADRKEPLTLIGP---KGLERVVSALRVIAP-ELPF 110
Query: 177 DLVALDV---GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR------KKLKKQYI---- 223
++ ++ +T+E+ N ++ F+ +H + GY + + R ++ K+Q I
Sbjct: 111 PIIYKEIEGAEQTFEL-NGYRLKAFRVNHNVLCYGYTMEIDRAGKFDVERAKEQEIPQKY 169
Query: 224 --HL-KGKQIEKLKKSGVEITDIILSP-----EVAFTGDT--TSEFMLNPRNADALRAKI 273
HL KG+ IE ++G+ D++L P ++ +T DT T+ N +++D +
Sbjct: 170 WKHLQKGETIE--TENGILTPDMVLGPPRKGLKLTYTTDTRPTNSIRENAKDSDLFICEG 227
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSED 301
+ E + +H + HL++D
Sbjct: 228 MYGEKEKAAKAVEYKHMTFYEAAHLAKD 255
>gi|297527193|ref|YP_003669217.1| beta-lactamase domain-containing protein [Staphylothermus
hellenicus DSM 12710]
gi|297256109|gb|ADI32318.1| beta-lactamase domain protein [Staphylothermus hellenicus DSM
12710]
Length = 251
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 75/203 (36%), Gaps = 49/203 (24%)
Query: 104 FDIGR-CPTRAIQQNF-------VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155
D+G C R + + ITH H DH GL S L N K + P+
Sbjct: 34 LDVGEGCQQRLFEAGLGLVKIKTIMITHLHGDHYLGLFGMFQSMHLSNRKNELYLIAPAK 93
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR 215
+D+ K F I L + + V GE Y N I V FK H I + GY + L
Sbjct: 94 LKDLLKKF-IELGLAKIAYPIYFVEAKEGELYR-DNKISVEAFKVVHGIEAYGYKLTL-- 149
Query: 216 KKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTT--SEFMLNPRNADALRAKI 273
K+G + +TGDT + +NAD I
Sbjct: 150 -------------------KNG---------KRIVYTGDTKPFEDLESIAKNAD-----I 176
Query: 274 LITEATFLDDEMSIEHAQQHGHT 296
L+ EATF D E A + GH+
Sbjct: 177 LVHEATFTSDLR--EEAWEQGHS 197
>gi|429205392|ref|ZP_19196669.1| ribonuclease Z [Lactobacillus saerimneri 30a]
gi|428146464|gb|EKW98703.1| ribonuclease Z [Lactobacillus saerimneri 30a]
Length = 310
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN---LKPPTIFVP 152
FD+G R R + N +FITH H DHI GLP +++SR + ++P TI+ P
Sbjct: 36 FDVGEGTQHQILRTNIRPRKINKIFITHLHGDHIFGLPGFLSSRSFQSGDHIEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNL 176
I++ V+ ++ +S + LN
Sbjct: 96 KGIEQFVKTSLQVSQSKLSYPLNF 119
>gi|423073518|ref|ZP_17062257.1| hypothetical protein HMPREF0322_01676 [Desulfitobacterium hafniense
DP7]
gi|361855596|gb|EHL07559.1| hypothetical protein HMPREF0322_01676 [Desulfitobacterium hafniense
DP7]
Length = 572
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 79/186 (42%), Gaps = 27/186 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGGLP L L+ P ++ KL R G +L L
Sbjct: 84 IFITHGHEDHIGGLPFL-----LPKLEVPVYGTKLTMGLVRAKL----RERGGYPEDL-L 133
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPSQ---------GYVIYLLRKKLKKQYIHLKGKQ 229
+D GE + + D V F+ H IP G VIY K Y + G++
Sbjct: 134 RVIDPGEPVKAK-DFQVEAFRVTHSIPDAVGYGIMTPLGRVIY--TGDFKVDYTPIDGQE 190
Query: 230 IE--KLKKSGVEITDIIL--SPEVAFTGDTTSEFMLNPRNADAL-RAKILITEATFLDDE 284
++ +L G E +L S +G T SE ++ DA RA+ I ATF +
Sbjct: 191 MDLGRLAAWGQEGVLALLCDSTNAERSGSTISEKVVGKTLMDAFSRAEGKIIMATFASNV 250
Query: 285 MSIEHA 290
I+ A
Sbjct: 251 HRIQQA 256
>gi|228909974|ref|ZP_04073795.1| Ribonuclease Z [Bacillus thuringiensis IBL 200]
gi|228849809|gb|EEM94642.1| Ribonuclease Z [Bacillus thuringiensis IBL 200]
Length = 307
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 98/222 (44%), Gaps = 30/222 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V + T N+ V + H I GY I LL KL + + +K I
Sbjct: 117 VVEITEEGTVFEDNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLE--MGVKPGPI 174
Query: 231 EKLKKSG--VEITDIILSPEVAFTGDTTSEFML----NPRNADALR-----AKILITEAT 279
K K G VE+ D + F G ++ + R +A R A +L+ EAT
Sbjct: 175 FKRLKDGEVVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 280 FLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
F + + Q H + H S + A + LQ+ +AK + LT
Sbjct: 235 F----AAADEQQAHDYFH-STSKQAASIALQA--NAKRLILT 269
>gi|239636830|ref|ZP_04677829.1| ribonuclease Z [Staphylococcus warneri L37603]
gi|239597504|gb|EEQ80002.1| ribonuclease Z [Staphylococcus warneri L37603]
Length = 306
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 96/238 (40%), Gaps = 43/238 (18%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTLIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
I +K E +L LN + +++ E+ +D V+ +H I S GY I
Sbjct: 96 GI----QKYIETTLTLSESHLNYPITYIEIDESLNYHHDGFTVQAEMLNHGIISYGYRIE 151
Query: 213 LLRKKLKKQYIHLKGKQIE------------------KLKKSGVEITDIILSPEVAFTGD 254
LK +E K+ +S + P VA GD
Sbjct: 152 TPTTPGTIDVDALKAIGLEPGPKYQEVKTNDTFEFNGKIYQSDEFKGEAKSGPVVAIFGD 211
Query: 255 TT---SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSED-IRQAVLK 308
T +E ++ A A I++ EAT+++ E ++ ++ H H D IRQ+ +K
Sbjct: 212 TKPCPNEHII------ANDADIMVHEATYIEGEKTLANSYHHSHIDDVFDLIRQSNVK 263
>gi|156933135|ref|YP_001437051.1| ribonuclease Z [Cronobacter sakazakii ATCC BAA-894]
gi|417792586|ref|ZP_12439923.1| ribonuclease Z [Cronobacter sakazakii E899]
gi|449307486|ref|YP_007439842.1| ribonuclease Z [Cronobacter sakazakii SP291]
gi|166991103|sp|A7MHT9.1|RBN_ENTS8 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|156531389|gb|ABU76215.1| hypothetical protein ESA_00945 [Cronobacter sakazakii ATCC BAA-894]
gi|333953322|gb|EGL71287.1| ribonuclease Z [Cronobacter sakazakii E899]
gi|449097519|gb|AGE85553.1| ribonuclease Z [Cronobacter sakazakii SP291]
Length = 304
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P I+ P I E VE + S + LN+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGPKGIAEFVETTLRLSGSWTSYPLNVH 118
Query: 178 LVA----LDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+ LD GE + V + H + GY I
Sbjct: 119 EITEGQLLDDGE-------LTVTAYPLTHPVECYGYRI 149
>gi|410672002|ref|YP_006924373.1| ribonuclease Z [Methanolobus psychrophilus R15]
gi|409171130|gb|AFV25005.1| ribonuclease Z [Methanolobus psychrophilus R15]
Length = 305
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 36/222 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH H DHI G+P + + + P P V + I +LG +L ++
Sbjct: 57 IFITHFHADHILGIPGLIQTMSFHGRTEPLRIYGP---HHVHEFARILSALGYYKLRFEI 113
Query: 179 VALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIY---LLRKKLKKQYIHLK---GKQI 230
A+D+ G+ + R+ + +T H +PS GY + + + + + I L G
Sbjct: 114 DAVDLEPGDIIK-RDGYSIHAIRTQHSVPSIGYALIEDERIGRFNRYKAIELGVPPGPLF 172
Query: 231 EKLKKS-GVEIT-DIILSPEV----------AFTGDT--TSEFMLNPRNADALRAKILIT 276
KL K VEI II S EV ++GDT + R AD +LI
Sbjct: 173 SKLHKGETVEINGKIITSQEVVGDPRPGRKIVYSGDTRPCQSILEASRGAD-----LLIH 227
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVV 318
++T +D+ E A++ H+ E A+L ++ VS ++
Sbjct: 228 DSTLANDQQ--EWAKESMHSTAEE---AALLAKEANVSKLIL 264
>gi|302787435|ref|XP_002975487.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
gi|300156488|gb|EFJ23116.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
Length = 517
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 43/176 (24%)
Query: 117 NFVFITHGHLDHIGGLPMY---VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHR------ 167
+ V +TH HLDH+G LP + G + PT + P + ED K+ R
Sbjct: 53 DCVIVTHFHLDHVGALPYFTEVCGYEGPVYMTYPTKALAPIMLEDYRKIMVDRRGEEEQF 112
Query: 168 -SLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK 226
+L + ++A+D+ +T + D+ R + HV+ + + +
Sbjct: 113 STLHIQQCMKKVIAVDLRQTIRVSRDLAFRAYYAGHVLGAAMFYV--------------- 157
Query: 227 GKQIEKLKKSGVEITDIILSPEVAFTGD--TTSEFMLNPRNADALRAKILITEATF 280
K+G + V +TGD T + L D L+ +LITE+T+
Sbjct: 158 --------KAG--------NSTVVYTGDYNMTPDRHLGAAQIDRLKPDLLITESTY 197
>gi|255570075|ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
gi|223534732|gb|EEF36424.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
Length = 963
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 12/97 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN----LKPPTIFVPPSIKEDVEKLFEIHR------S 168
V ITH HLDH+G LP + G YN + PT + P + ED K+ R +
Sbjct: 63 VIITHFHLDHVGALPYFTEVCG-YNGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQFT 121
Query: 169 LGNVELNLD-LVALDVGETYEMRNDIVVRPFKTHHVI 204
+++ L+ ++A+D+ +T ++ D+ +R + HV+
Sbjct: 122 ADHIKQCLNKVIAVDLKQTVQVDKDLQIRAYYAGHVL 158
>gi|154686646|ref|YP_001421807.1| ribonuclease Z [Bacillus amyloliquefaciens FZB42]
gi|166991093|sp|A7Z6F0.1|RNZ_BACA2 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|154352497|gb|ABS74576.1| Rnz [Bacillus amyloliquefaciens FZB42]
Length = 308
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 34/202 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK +E + + ++ L
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLNV--TATHLTYPLT 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ ++ G +E +V H + + GY + L +LK+ I G
Sbjct: 117 VHEIEEGTVFE-DEQFIVTAASVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIP-PGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLN--PRNADALRAKIL 274
+K+KK G +T D + P+ VAF+GDT + + RNAD +L
Sbjct: 175 QKIKK-GETVTLDDGRIINGRDFLEPPKKGRIVAFSGDTRASERVTELARNAD-----VL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHT 296
+ EATF ++ + H H T
Sbjct: 229 VHEATFAKEDAKLAHNYYHATT 250
>gi|375308862|ref|ZP_09774144.1| ribonuclease Z [Paenibacillus sp. Aloe-11]
gi|375079074|gb|EHS57300.1| ribonuclease Z [Paenibacillus sp. Aloe-11]
Length = 309
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 87/210 (41%), Gaps = 28/210 (13%)
Query: 105 DIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLF 163
+I R P + + +FITH H DH+ GLP ++SR P T++ PP +K+ +E
Sbjct: 45 EILRSPLKLSRLEKIFITHLHGDHLFGLPGLLSSRAYQGGTAPLTVYGPPGLKQYIELSL 104
Query: 164 EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------------ 211
I +S N +L+ + G V H I S GY I
Sbjct: 105 GISQSRINYQLH---IVEHTGGVLFDDGQFRVESALLDHRIDSFGYRIVEMDKPGKLNQE 161
Query: 212 YLLRKKLKKQYIHLKGKQIEKLKKSGVEI---TDIILSPE----VAFTGDTTSEFMLNPR 264
L R +K I+ K K+ E ++ G I D++ SP+ + GDT P
Sbjct: 162 LLERYGIKPGPIYGKLKRGESVEVEGGVILHPQDVLGSPKKGRIITILGDTRP----CPN 217
Query: 265 NAD-ALRAKILITEATFLDDEMSIEHAQQH 293
A A +++ EATFL + + H
Sbjct: 218 TVVLAQDATVVVHEATFLHELADTAYEYHH 247
>gi|419914528|ref|ZP_14432923.1| ribonuclease Z [Escherichia coli KD1]
gi|388386273|gb|EIL47923.1| ribonuclease Z [Escherichia coli KD1]
Length = 305
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE 188
+V + GE ++
Sbjct: 118 IVEIGAGEIFD 128
>gi|229086713|ref|ZP_04218880.1| Ribonuclease Z [Bacillus cereus Rock3-44]
gi|228696587|gb|EEL49405.1| Ribonuclease Z [Bacillus cereus Rock3-44]
Length = 307
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 27/205 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V + + G +E N V + H I GY I LL +KL ++ +
Sbjct: 117 IVEITEEGIVFE-DNQFSVETKRLSHGIECFGYRIVEKDIQGQLLVEKLLEEGVKPGPIF 175
Query: 223 IHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKILITE 277
LK + +L+ V + + P + GDT N A A +L+ E
Sbjct: 176 KRLKDGETVELEDGRVLCGNDFIGPPQKGRIITILGDTR---YCEASNQLAQDADVLVHE 232
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEDI 302
ATF ++ H H T + I
Sbjct: 233 ATFAAEDERQAHDYFHSTTEQAARI 257
>gi|389840199|ref|YP_006342283.1| ribonuclease Z [Cronobacter sakazakii ES15]
gi|387850675|gb|AFJ98772.1| ribonuclease Z [Cronobacter sakazakii ES15]
Length = 304
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P I+ P I E VE + S + LN+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGPKGIAEFVETTLRLSGSWTSYPLNVH 118
Query: 178 LVA----LDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+ LD GE + V + H + GY I
Sbjct: 119 EITEGQLLDDGE-------LTVTAYPLTHPVECYGYRI 149
>gi|196248795|ref|ZP_03147495.1| ribonuclease Z [Geobacillus sp. G11MC16]
gi|196211671|gb|EDY06430.1| ribonuclease Z [Geobacillus sp. G11MC16]
Length = 306
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + + P T+F P I++ VE + + ELN
Sbjct: 59 IFITHLHGDHLFGLPGLLGSRSFQSGETPLTVFGPKGIRQFVETALTVSGTRLRYELN-- 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+ +D G ++ V + H +PS G+ +
Sbjct: 117 IAEIDEGVIFDDER-FSVTAKRLDHGMPSYGFRV 149
>gi|188535435|ref|YP_001909232.1| ribonuclease Z [Erwinia tasmaniensis Et1/99]
gi|254808637|sp|B2VHF1.1|RBN_ERWT9 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|188030477|emb|CAO98371.1| Ribonuclease Z [Erwinia tasmaniensis Et1/99]
Length = 304
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R P + + +FITH H DH+ GLP + SR + ++P T++ P
Sbjct: 36 FDCGEGTQHQILRTPIKPGRIEKIFITHLHGDHLFGLPGLLTSRSMNGCVEPMTLYGPAG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
IK VE + S + L+++ + GE ++ + V + H + GY I L
Sbjct: 96 IKTFVETSLSLSGSW--LTFPLEIIEISAGEVFQDAH-FRVTAYPLTHPVECYGYRIDEL 152
Query: 215 RK 216
K
Sbjct: 153 DK 154
>gi|300958961|ref|ZP_07171063.1| ribonuclease Z [Escherichia coli MS 175-1]
gi|300314413|gb|EFJ64197.1| ribonuclease Z [Escherichia coli MS 175-1]
Length = 305
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHRDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|289550723|ref|YP_003471627.1| ribonuclease Z [Staphylococcus lugdunensis HKU09-01]
gi|385784351|ref|YP_005760524.1| hypothetical protein SLUG_14070 [Staphylococcus lugdunensis
N920143]
gi|418414025|ref|ZP_12987241.1| ribonuclease Z [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|289180255|gb|ADC87500.1| Ribonuclease Z [Staphylococcus lugdunensis HKU09-01]
gi|339894607|emb|CCB53889.1| conserved hypothetical protein [Staphylococcus lugdunensis N920143]
gi|410877663|gb|EKS25555.1| ribonuclease Z [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 307
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 103/240 (42%), Gaps = 43/240 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGESKPLTLVGPH 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
IK VE + S ++ + + +D G +Y N V +H I S GY +
Sbjct: 96 GIKAFVETTLSLSES--HLNYPITFIEIDDGFSYH-HNGFKVTAKVLNHGIVSYGYRVEA 152
Query: 214 LRKKLKKQYIHLK------GKQIEKLKKSGV-EITDIIL-----------SPEVAFTGDT 255
K LK G + +++K + E +II P +A GDT
Sbjct: 153 PTTPGKINVEALKALGLEPGPKYQEVKDNDTFEFNNIIYKSQDFKGLAKPGPIIAIFGDT 212
Query: 256 ---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSK 312
+E ++ A A+++I EAT+++ + ++ A + H+H+ +D+ Q + + K
Sbjct: 213 KPCANEKII------AQGAQLMIHEATYIEGDKAL--ANNYHHSHI-DDVFQLIHQAHVK 263
>gi|138895904|ref|YP_001126357.1| ribonuclease Z [Geobacillus thermodenitrificans NG80-2]
gi|134267417|gb|ABO67612.1| Metal-dependent hydrolase [Geobacillus thermodenitrificans NG80-2]
Length = 308
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + + P T+F P I++ VE + + ELN
Sbjct: 61 IFITHLHGDHLFGLPGLLGSRSFQSGETPLTVFGPKGIRQFVETALTVSGTRLRYELN-- 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+ +D G ++ V + H +PS G+ +
Sbjct: 119 IAEIDEGVIFDDER-FSVTAKRLDHGMPSYGFRV 151
>gi|448737743|ref|ZP_21719778.1| ribonuclease Z [Halococcus thailandensis JCM 13552]
gi|445803299|gb|EMA53597.1| ribonuclease Z [Halococcus thailandensis JCM 13552]
Length = 305
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 104/255 (40%), Gaps = 59/255 (23%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF++H H DH+ GLP + + + I PP
Sbjct: 33 FDCGEGTQRQMMRFGTGFSVSHVFLSHLHGDHVLGLPGLCQTLDFNDREEALAIHTPPGT 92
Query: 156 KEDVEKLFEIHRSLGNV-----ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV 210
K VE L + + E+ +AL E YE VR F+T H S GY
Sbjct: 93 KSAVENLVGVTGARPGYPIRVHEVQPGGIALRE-EEYE------VRAFETDHRTRSVGYA 145
Query: 211 IYLLRKKLKKQYIHLKGKQI---------EKLKKSGVEITD-IILSPE-----------V 249
L+ K ++ + +++ E + + VE+ D ++ PE +
Sbjct: 146 --LVEDDRKGRFDRERAEELGVPAGPLFSELHEGNAVELDDGTVVDPEQVVGPPRPGRKI 203
Query: 250 AFTGDTTSEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAV 306
+TGDT P A A A +L+ EA+F +D E A + GH+ RQA
Sbjct: 204 VYTGDT------RPTGATVEAADDADLLVHEASFGEDRS--ERAGKTGHST----ARQAA 251
Query: 307 LKLQSKVSAKVVPLT 321
L ++ AK + LT
Sbjct: 252 -DLATRADAKRLALT 265
>gi|283832296|ref|ZP_06352037.1| ribonuclease Z [Citrobacter youngae ATCC 29220]
gi|291071941|gb|EFE10050.1| ribonuclease Z [Citrobacter youngae ATCC 29220]
Length = 305
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + N+KP T++ P ++E E + S + LD
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMAGNVKPLTLYGPKGLREFTETALRLSGSW--TDYPLD 117
Query: 178 LVALDVGE 185
+V + GE
Sbjct: 118 IVEITAGE 125
>gi|440782583|ref|ZP_20960600.1| ribonuclease Z [Clostridium pasteurianum DSM 525]
gi|440220107|gb|ELP59316.1| ribonuclease Z [Clostridium pasteurianum DSM 525]
Length = 303
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 92/213 (43%), Gaps = 29/213 (13%)
Query: 119 VFITHGHLDHIGGLP---MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+ TH H DH+ GLP + +A+ G + P T+ P +K V + I L ELN
Sbjct: 57 ICFTHYHADHVAGLPGLLLTIANSG--RVDPLTLIGPTGLKNVVNGMTVIAPMLP-YELN 113
Query: 176 LDLVALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVIYLLR----KKLKKQYIHLKGKQI 230
L V E YE R N +++ H +P GY I + R K K + + K
Sbjct: 114 LVEVQ---QEFYEFRLNHMIIHTINCDHTLPCLGYSIEIKRMNKFNKEKAESNKIPTKFW 170
Query: 231 EKLKKSG-VEITDIILSPEVAFTGDTTSE----FMLNPRNADAL-----RAKILITEATF 280
L++ V+ I +PE+ GD ++ + R D++ + + I E +
Sbjct: 171 SILQRGNRVQFNSEIFTPEMVL-GDERKGIKICYITDTRPIDSIVNFIKESDLFICEGMY 229
Query: 281 LDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
DE +IE A ++ H E A+L S+V
Sbjct: 230 -GDEKNIEKAIKNKHMTFKE---AAILAKLSRV 258
>gi|146312460|ref|YP_001177534.1| ribonuclease Z [Enterobacter sp. 638]
gi|166991102|sp|A4WCQ3.1|RBN_ENT38 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|145319336|gb|ABP61483.1| RNAse Z [Enterobacter sp. 638]
Length = 305
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + N+ P TIF P I+E E + S + L+
Sbjct: 60 IFITHLHGDHVFGLPGLLCSRSMAGNVNPLTIFGPAGIREFTETALRLSGSW--TDYPLE 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + G ++ V +H + GY I
Sbjct: 118 IVEVSEGVVFK-DEQYTVTAGALNHPVECYGYRI 150
>gi|423470012|ref|ZP_17446756.1| hypothetical protein IEM_01318 [Bacillus cereus BAG6O-2]
gi|423558639|ref|ZP_17534941.1| hypothetical protein II3_03843 [Bacillus cereus MC67]
gi|401191907|gb|EJQ98929.1| hypothetical protein II3_03843 [Bacillus cereus MC67]
gi|402437264|gb|EJV69288.1| hypothetical protein IEM_01318 [Bacillus cereus BAG6O-2]
Length = 556
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NSTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
I K+ + G E +LS
Sbjct: 179 IGKMAQIGNEGVLCLLS 195
>gi|229552154|ref|ZP_04440879.1| ribonuclease Z [Lactobacillus rhamnosus LMS2-1]
gi|258539568|ref|YP_003174067.1| ribonuclease Z [Lactobacillus rhamnosus Lc 705]
gi|385835218|ref|YP_005872992.1| ribonuclease Z [Lactobacillus rhamnosus ATCC 8530]
gi|229314456|gb|EEN80429.1| ribonuclease Z [Lactobacillus rhamnosus LMS2-1]
gi|257151244|emb|CAR90216.1| Ribonuclease Z [Lactobacillus rhamnosus Lc 705]
gi|355394709|gb|AER64139.1| ribonuclease Z [Lactobacillus rhamnosus ATCC 8530]
Length = 319
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 97/226 (42%), Gaps = 45/226 (19%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G I Q VFITH H DHI GLP ++ASR +P TI+ PP
Sbjct: 36 FDVGEGTQHQILQTTIKPRKIAKVFITHLHGDHIFGLPGFLASRANQGGTEPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDL-----VALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
I++ V+ ++ +S + + L V D +T+++ D + H I S G+
Sbjct: 96 IEDFVKTSLKVSQSHLSYAIKFVLLRHPGVIFD-DQTFKVSFD------RLDHRITSFGF 148
Query: 210 VI-------YLLRKKLKKQ-------YIHLK-GKQIEKLKKSGVEITDIILSPE----VA 250
+ LL K++ Y LK GK + + D I S + VA
Sbjct: 149 RVEEKPHPGELLIDKVRAAKIPAGPVYASLKAGKTVTLPDGRTFDGHDFIGSAQPGRTVA 208
Query: 251 FTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHT 296
GDT M A A +L+ E+TF DE + A+Q+ H+
Sbjct: 209 IFGDTR---MCRRALPLAAGADVLVHESTFGPDESQL--AKQYYHS 249
>gi|410454063|ref|ZP_11308006.1| ribonuclease Z [Bacillus bataviensis LMG 21833]
gi|409932743|gb|EKN69701.1| ribonuclease Z [Bacillus bataviensis LMG 21833]
Length = 307
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 80/207 (38%), Gaps = 32/207 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR + T++ P IKE + + SL L
Sbjct: 59 IFITHLHGDHIYGLPGLLSSRSFQGGESEVTVYGPKGIKEYI----HVSLSLSQTYLKYQ 114
Query: 178 L-VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIH----- 224
L V +V H IPS GY I LL KL + +
Sbjct: 115 LTVIEIEEGIIFEDEQFIVETRLLEHGIPSYGYRIVEKDRPGTLLADKLMEAGVQPGPIF 174
Query: 225 --LKGKQIEKLKKSGVEITDIILSPE-----VAFTGDT--TSEFMLNPRNADALRAKILI 275
+K + L+ V L P + GDT +L +NAD +LI
Sbjct: 175 RKIKNGETVTLEDGRVIEPGEFLGPVQKGRIITILGDTRYCENALLLAKNAD-----LLI 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEDI 302
EATF E + + H TH + DI
Sbjct: 230 HEATFSKGEEKLAYDYFHSTTHQAADI 256
>gi|417629533|ref|ZP_12279770.1| ribonuclease Z [Escherichia coli STEC_MHI813]
gi|345372280|gb|EGX04244.1| ribonuclease Z [Escherichia coli STEC_MHI813]
Length = 305
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|387607959|ref|YP_006096815.1| ribonuclease Z (tRNA endonuclease) [Escherichia coli 042]
gi|432392786|ref|ZP_19635616.1| ribonuclease Z [Escherichia coli KTE21]
gi|432771234|ref|ZP_20005573.1| ribonuclease Z [Escherichia coli KTE50]
gi|432962440|ref|ZP_20152093.1| ribonuclease Z [Escherichia coli KTE202]
gi|433063733|ref|ZP_20250655.1| ribonuclease Z [Escherichia coli KTE125]
gi|284922259|emb|CBG35344.1| ribonuclease Z (tRNA endonuclease) [Escherichia coli 042]
gi|430917942|gb|ELC38981.1| ribonuclease Z [Escherichia coli KTE21]
gi|431314931|gb|ELG02863.1| ribonuclease Z [Escherichia coli KTE50]
gi|431474231|gb|ELH54053.1| ribonuclease Z [Escherichia coli KTE202]
gi|431581387|gb|ELI53838.1| ribonuclease Z [Escherichia coli KTE125]
Length = 305
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|423452901|ref|ZP_17429754.1| hypothetical protein IEE_01645 [Bacillus cereus BAG5X1-1]
gi|401139460|gb|EJQ47022.1| hypothetical protein IEE_01645 [Bacillus cereus BAG5X1-1]
Length = 556
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NSTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
I K+ + G E +LS
Sbjct: 179 IGKMAQIGNEGVLCLLS 195
>gi|146283279|ref|YP_001173432.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri A1501]
gi|145571484|gb|ABP80590.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri A1501]
Length = 337
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ ITH H DH GLP +AS G+ K P TI P I+ V + +S + EL+
Sbjct: 60 ICITHVHGDHCYGLPGLLASAGMMGRKAPLTIIAPQGIETWVRATLSMSQSWLSYELDFH 119
Query: 178 LV-ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
V LD + MR + + H +P GY R + IE+L+
Sbjct: 120 AVETLDEWRSPNMR----IEATELSHRVPCYGYSFSEARPDPR--------LDIERLEHD 167
Query: 237 GV 238
GV
Sbjct: 168 GV 169
>gi|81241825|gb|ABB62535.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length = 311
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 156
>gi|311068985|ref|YP_003973908.1| ribonuclease Z [Bacillus atrophaeus 1942]
gi|419820371|ref|ZP_14343982.1| ribonuclease Z [Bacillus atrophaeus C89]
gi|310869502|gb|ADP32977.1| ribonuclease Z [Bacillus atrophaeus 1942]
gi|388475523|gb|EIM12235.1| ribonuclease Z [Bacillus atrophaeus C89]
Length = 308
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 28/199 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P I+ +E + + + L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTIYGPKGIRAFIETSLNVTAT--RLTYPLA 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQIE 231
++ ++ G +E + V H +P+ GY + L+ L K+ G +
Sbjct: 117 IIEIEEGVIFE-DDQFTVTAKPVIHGVPAFGYRVQEKDMPGALKADLLKEMKIPPGPIYQ 175
Query: 232 KLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITE 277
K+K+ G E+T D + P+ VAF+GDT + + A+ A +L+ E
Sbjct: 176 KIKQ-GEEVTLEDGRVINGRDFLDEPKKGRVVAFSGDTR---VCSNVKELAVDADVLVHE 231
Query: 278 ATFLDDEMSIEHAQQHGHT 296
ATF + + H H T
Sbjct: 232 ATFAKGDDKLAHDYFHSTT 250
>gi|433043847|ref|ZP_20231342.1| ribonuclease Z [Escherichia coli KTE117]
gi|73856267|gb|AAZ88974.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|431555685|gb|ELI29524.1| ribonuclease Z [Escherichia coli KTE117]
Length = 311
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 156
>gi|161986495|ref|YP_311209.2| ribonuclease Z [Shigella sonnei Ss046]
gi|383179242|ref|YP_005457247.1| ribonuclease Z [Shigella sonnei 53G]
gi|414576888|ref|ZP_11434070.1| ribonuclease Z [Shigella sonnei 3233-85]
gi|420364332|ref|ZP_14865215.1| ribonuclease Z [Shigella sonnei 4822-66]
gi|432948143|ref|ZP_20143299.1| ribonuclease Z [Escherichia coli KTE196]
gi|391284641|gb|EIQ43236.1| ribonuclease Z [Shigella sonnei 3233-85]
gi|391293995|gb|EIQ52254.1| ribonuclease Z [Shigella sonnei 4822-66]
gi|431458121|gb|ELH38458.1| ribonuclease Z [Escherichia coli KTE196]
Length = 305
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|419058020|ref|ZP_13604825.1| ribonuclease Z [Escherichia coli DEC3C]
gi|419063490|ref|ZP_13610218.1| ribonuclease Z [Escherichia coli DEC3D]
gi|419087251|ref|ZP_13632608.1| ribonuclease Z [Escherichia coli DEC4B]
gi|419093533|ref|ZP_13638818.1| ribonuclease Z [Escherichia coli DEC4C]
gi|419099056|ref|ZP_13644255.1| ribonuclease Z [Escherichia coli DEC4D]
gi|419104842|ref|ZP_13649971.1| ribonuclease Z [Escherichia coli DEC4E]
gi|424128966|ref|ZP_17861889.1| ribonuclease Z [Escherichia coli PA9]
gi|424135217|ref|ZP_17867703.1| ribonuclease Z [Escherichia coli PA10]
gi|424456707|ref|ZP_17907867.1| ribonuclease Z [Escherichia coli PA33]
gi|424570138|ref|ZP_18010722.1| ribonuclease Z [Escherichia coli EC4448]
gi|424576300|ref|ZP_18016402.1| ribonuclease Z [Escherichia coli EC1845]
gi|425110909|ref|ZP_18512844.1| ribonuclease Z [Escherichia coli 6.0172]
gi|425348904|ref|ZP_18735403.1| ribonuclease Z [Escherichia coli EC1849]
gi|444959114|ref|ZP_21276981.1| ribonuclease Z [Escherichia coli 99.1753]
gi|377904607|gb|EHU68885.1| ribonuclease Z [Escherichia coli DEC3C]
gi|377909965|gb|EHU74163.1| ribonuclease Z [Escherichia coli DEC3D]
gi|377930441|gb|EHU94324.1| ribonuclease Z [Escherichia coli DEC4B]
gi|377941975|gb|EHV05712.1| ribonuclease Z [Escherichia coli DEC4C]
gi|377942166|gb|EHV05902.1| ribonuclease Z [Escherichia coli DEC4D]
gi|377947325|gb|EHV10992.1| ribonuclease Z [Escherichia coli DEC4E]
gi|390683643|gb|EIN59303.1| ribonuclease Z [Escherichia coli PA9]
gi|390696914|gb|EIN71353.1| ribonuclease Z [Escherichia coli PA10]
gi|390745653|gb|EIO16442.1| ribonuclease Z [Escherichia coli PA33]
gi|390896033|gb|EIP55432.1| ribonuclease Z [Escherichia coli EC4448]
gi|390920373|gb|EIP78645.1| ribonuclease Z [Escherichia coli EC1845]
gi|408265771|gb|EKI86453.1| ribonuclease Z [Escherichia coli EC1849]
gi|408551159|gb|EKK28446.1| ribonuclease Z [Escherichia coli 6.0172]
gi|444573382|gb|ELV49760.1| ribonuclease Z [Escherichia coli 99.1753]
Length = 294
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 49 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 106
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 107 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 139
>gi|366158559|ref|ZP_09458421.1| ribonuclease Z [Escherichia sp. TW09308]
gi|432372947|ref|ZP_19615986.1| ribonuclease Z [Escherichia coli KTE11]
gi|430895369|gb|ELC17632.1| ribonuclease Z [Escherichia coli KTE11]
Length = 305
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 40/204 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIH---- 224
++ + GE + +R V + H + GY I L + LK +
Sbjct: 118 IIEISAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNARALKDAGVQPGPL 174
Query: 225 ----LKGKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
KGK + + D + +P +A GDT P +A AK I
Sbjct: 175 FQDLKKGKTVTLEDGRQINGADYLDAPTPGKSIAIFGDT------GPCDAAIDLAKGVDI 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHT 296
++ EAT +M++E A GH+
Sbjct: 229 MVHEATL---DMAMEAKANSRGHS 249
>gi|89895122|ref|YP_518609.1| hypothetical protein DSY2376 [Desulfitobacterium hafniense Y51]
gi|89334570|dbj|BAE84165.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 552
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 79/186 (42%), Gaps = 27/186 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGGLP L L+ P ++ KL R G +L L
Sbjct: 64 IFITHGHEDHIGGLPFL-----LPKLEVPVYGTKLTMGLVRAKL----RERGGYPEDL-L 113
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPSQ---------GYVIYLLRKKLKKQYIHLKGKQ 229
+D GE + + D V F+ H IP G VIY K Y + G++
Sbjct: 114 RVIDPGEPVKAK-DFQVEAFRVTHSIPDAVGYGILTPLGRVIY--TGDFKVDYTPIDGQE 170
Query: 230 IE--KLKKSGVEITDIIL--SPEVAFTGDTTSEFMLNPRNADAL-RAKILITEATFLDDE 284
++ +L G E +L S +G T SE ++ DA RA+ I ATF +
Sbjct: 171 MDLGRLAAWGQEGVLALLCDSTNAERSGSTISEKVVGKTLMDAFSRAEGKIIMATFASNV 230
Query: 285 MSIEHA 290
I+ A
Sbjct: 231 HRIQQA 236
>gi|229075848|ref|ZP_04208824.1| Ribonuclease Z [Bacillus cereus Rock4-18]
gi|229098612|ref|ZP_04229552.1| Ribonuclease Z [Bacillus cereus Rock3-29]
gi|229104747|ref|ZP_04235408.1| Ribonuclease Z [Bacillus cereus Rock3-28]
gi|229117638|ref|ZP_04247009.1| Ribonuclease Z [Bacillus cereus Rock1-3]
gi|407706669|ref|YP_006830254.1| hypothetical protein MC28_3433 [Bacillus thuringiensis MC28]
gi|423378000|ref|ZP_17355284.1| ribonuclease Z [Bacillus cereus BAG1O-2]
gi|423441121|ref|ZP_17418027.1| ribonuclease Z [Bacillus cereus BAG4X2-1]
gi|423448723|ref|ZP_17425602.1| ribonuclease Z [Bacillus cereus BAG5O-1]
gi|423464195|ref|ZP_17440963.1| ribonuclease Z [Bacillus cereus BAG6O-1]
gi|423533537|ref|ZP_17509955.1| ribonuclease Z [Bacillus cereus HuB2-9]
gi|423541207|ref|ZP_17517598.1| ribonuclease Z [Bacillus cereus HuB4-10]
gi|423547445|ref|ZP_17523803.1| ribonuclease Z [Bacillus cereus HuB5-5]
gi|423622772|ref|ZP_17598550.1| ribonuclease Z [Bacillus cereus VD148]
gi|228665817|gb|EEL21288.1| Ribonuclease Z [Bacillus cereus Rock1-3]
gi|228678620|gb|EEL32836.1| Ribonuclease Z [Bacillus cereus Rock3-28]
gi|228684691|gb|EEL38629.1| Ribonuclease Z [Bacillus cereus Rock3-29]
gi|228707163|gb|EEL59360.1| Ribonuclease Z [Bacillus cereus Rock4-18]
gi|401129317|gb|EJQ37000.1| ribonuclease Z [Bacillus cereus BAG5O-1]
gi|401172395|gb|EJQ79616.1| ribonuclease Z [Bacillus cereus HuB4-10]
gi|401179166|gb|EJQ86339.1| ribonuclease Z [Bacillus cereus HuB5-5]
gi|401260892|gb|EJR67060.1| ribonuclease Z [Bacillus cereus VD148]
gi|401636266|gb|EJS54020.1| ribonuclease Z [Bacillus cereus BAG1O-2]
gi|402417782|gb|EJV50082.1| ribonuclease Z [Bacillus cereus BAG4X2-1]
gi|402420462|gb|EJV52733.1| ribonuclease Z [Bacillus cereus BAG6O-1]
gi|402463756|gb|EJV95456.1| ribonuclease Z [Bacillus cereus HuB2-9]
gi|407384354|gb|AFU14855.1| Ribonuclease Z [Bacillus thuringiensis MC28]
Length = 307
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 84/208 (40%), Gaps = 31/208 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTKLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ-------YI 223
+V + T N+ V K H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFYVETKKLSHGIECFGYRIVEKDIQGVLLVDKLLEMGVKPGPIFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
LK ++ +L+ + D I P+ + GDT A A +L+ EA
Sbjct: 177 RLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDTR---YCEASRELAQNADVLVHEA 233
Query: 279 TFLDDEMSIEHAQQHGHTHLSEDIRQAV 306
TF D+ +Q H + +QA
Sbjct: 234 TFAADD------EQQAHDYFHSTSKQAA 255
>gi|293415562|ref|ZP_06658205.1| ribonuclease Z [Escherichia coli B185]
gi|291433210|gb|EFF06189.1| ribonuclease Z [Escherichia coli B185]
Length = 311
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 156
>gi|194477150|ref|YP_002049329.1| Ribonuclease Z [Paulinella chromatophora]
gi|171192157|gb|ACB43119.1| Ribonuclease Z [Paulinella chromatophora]
Length = 319
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 94/228 (41%), Gaps = 37/228 (16%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD G R R Q +FITH H DHI GLP +AS GL N + ++ P
Sbjct: 35 FDCGEATQHQILRSELRISQLRRIFITHMHGDHIFGLPGLLASLGLAGNCEGVELYGPDL 94
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN--DIVVRPFKTHHVIPSQGYVI- 211
+++ +E + L + V + + + D++VR +H +P+ Y I
Sbjct: 95 LRDYLEGTLRTSSTRIGYPLRIHRVRCAANNSAILVDDKDLLVRCTALNHRVPAYAYRIE 154
Query: 212 ---YLLRKKLKK----------QYIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTG 253
R +++ Y HLK + L+ + + P+ + +
Sbjct: 155 QKPRAGRFNIEQARSLGIPPGPAYGHLKAGREIVLQDGRIIKGKTLCGPDKPGCCIVYCT 214
Query: 254 DTT-SEFMLN-PRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLS 299
DT SE +N R AD +LI E+TF E + + +QH + ++
Sbjct: 215 DTVFSEAAVNLSRGAD-----LLIHESTFSHREAEMAYKRQHSTSMMA 257
>gi|449460766|ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Cucumis sativus]
Length = 649
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN----LKPPTIFVPPSIKEDVEKLFEIHRSLGN--- 171
+ ITH HLDHIG LP + G YN + PT+ + P ED K+ R
Sbjct: 63 IIITHFHLDHIGALPYFTEVCG-YNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQFT 121
Query: 172 ----VELNLDLVALDVGETYEMRNDIVVRPFKTHHVI 204
+E +V +D+ +T ++ D+ +R + HV+
Sbjct: 122 NDHIMECLKKVVPVDLKQTIQVDEDLQIRAYYAGHVL 158
>gi|415844452|ref|ZP_11524194.1| ribonuclease Z [Shigella sonnei 53G]
gi|418266674|ref|ZP_12886155.1| ribonuclease Z [Shigella sonnei str. Moseley]
gi|420359352|ref|ZP_14860326.1| ribonuclease Z [Shigella sonnei 3226-85]
gi|323168564|gb|EFZ54244.1| ribonuclease Z [Shigella sonnei 53G]
gi|391282033|gb|EIQ40670.1| ribonuclease Z [Shigella sonnei 3226-85]
gi|397899499|gb|EJL15873.1| ribonuclease Z [Shigella sonnei str. Moseley]
Length = 294
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 49 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 106
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 107 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 139
>gi|300931381|ref|ZP_07146710.1| ribonuclease Z [Escherichia coli MS 187-1]
gi|386614883|ref|YP_006134549.1| ribonuclease Z [Escherichia coli UMNK88]
gi|387507656|ref|YP_006159912.1| ribonuclease Z [Escherichia coli O55:H7 str. RM12579]
gi|419076281|ref|ZP_13621799.1| ribonuclease Z [Escherichia coli DEC3F]
gi|419115608|ref|ZP_13660625.1| ribonuclease Z [Escherichia coli DEC5A]
gi|419121236|ref|ZP_13666192.1| ribonuclease Z [Escherichia coli DEC5B]
gi|419126913|ref|ZP_13671798.1| ribonuclease Z [Escherichia coli DEC5C]
gi|419132293|ref|ZP_13677130.1| ribonuclease Z [Escherichia coli DEC5D]
gi|419137326|ref|ZP_13682122.1| ribonuclease Z [Escherichia coli DEC5E]
gi|420281489|ref|ZP_14783727.1| ribonuclease Z [Escherichia coli TW06591]
gi|425144939|ref|ZP_18544948.1| ribonuclease Z [Escherichia coli 10.0869]
gi|425249987|ref|ZP_18642936.1| ribonuclease Z [Escherichia coli 5905]
gi|425262060|ref|ZP_18654090.1| ribonuclease Z [Escherichia coli EC96038]
gi|425268098|ref|ZP_18659742.1| ribonuclease Z [Escherichia coli 5412]
gi|432450424|ref|ZP_19692689.1| ribonuclease Z [Escherichia coli KTE193]
gi|432486076|ref|ZP_19727991.1| ribonuclease Z [Escherichia coli KTE212]
gi|432627921|ref|ZP_19863897.1| ribonuclease Z [Escherichia coli KTE77]
gi|432671341|ref|ZP_19906870.1| ribonuclease Z [Escherichia coli KTE119]
gi|433034103|ref|ZP_20221819.1| ribonuclease Z [Escherichia coli KTE112]
gi|433174191|ref|ZP_20358716.1| ribonuclease Z [Escherichia coli KTE232]
gi|445013023|ref|ZP_21329141.1| ribonuclease Z [Escherichia coli PA48]
gi|300460751|gb|EFK24244.1| ribonuclease Z [Escherichia coli MS 187-1]
gi|332344052|gb|AEE57386.1| ribonuclease Z [Escherichia coli UMNK88]
gi|374359650|gb|AEZ41357.1| ribonuclease Z [Escherichia coli O55:H7 str. RM12579]
gi|377921322|gb|EHU85321.1| ribonuclease Z [Escherichia coli DEC3F]
gi|377960202|gb|EHV23686.1| ribonuclease Z [Escherichia coli DEC5A]
gi|377966460|gb|EHV29871.1| ribonuclease Z [Escherichia coli DEC5B]
gi|377975025|gb|EHV38350.1| ribonuclease Z [Escherichia coli DEC5C]
gi|377975256|gb|EHV38577.1| ribonuclease Z [Escherichia coli DEC5D]
gi|377984319|gb|EHV47554.1| ribonuclease Z [Escherichia coli DEC5E]
gi|390781776|gb|EIO49453.1| ribonuclease Z [Escherichia coli TW06591]
gi|408163845|gb|EKH91692.1| ribonuclease Z [Escherichia coli 5905]
gi|408180727|gb|EKI07332.1| ribonuclease Z [Escherichia coli EC96038]
gi|408182740|gb|EKI09224.1| ribonuclease Z [Escherichia coli 5412]
gi|408591660|gb|EKK66081.1| ribonuclease Z [Escherichia coli 10.0869]
gi|430979814|gb|ELC96579.1| ribonuclease Z [Escherichia coli KTE193]
gi|431015285|gb|ELD28840.1| ribonuclease Z [Escherichia coli KTE212]
gi|431162532|gb|ELE62973.1| ribonuclease Z [Escherichia coli KTE77]
gi|431210260|gb|ELF08322.1| ribonuclease Z [Escherichia coli KTE119]
gi|431551109|gb|ELI25096.1| ribonuclease Z [Escherichia coli KTE112]
gi|431691935|gb|ELJ57380.1| ribonuclease Z [Escherichia coli KTE232]
gi|444624665|gb|ELV98547.1| ribonuclease Z [Escherichia coli PA48]
Length = 305
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|149181631|ref|ZP_01860124.1| ribonuclease Z [Bacillus sp. SG-1]
gi|148850609|gb|EDL64766.1| ribonuclease Z [Bacillus sp. SG-1]
Length = 307
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 86/203 (42%), Gaps = 36/203 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVEL--N 175
+FITH H DHI GLP + SR + T++ PP I+E E+ S+ L
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGETALTVYGPPGIRE----FIEVSLSVSGTRLLYP 114
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGK 228
L + ++ G +E + V K H +P GY I L KLK+ I G
Sbjct: 115 LHIEEIEEGSIFE-DDQFSVEACKLDHALPCFGYRIVEKDKPGVLQAGKLKELGIK-PGP 172
Query: 229 QIEKLKKSG---------VEITDIILSP----EVAFTGDT--TSEFMLNPRNADALRAKI 273
+KLK+ ++ T+ + P V GDT ++ + NADA
Sbjct: 173 IFKKLKEGERVTLEDGRMIDGTEFLGPPIKGRIVTILGDTRPSAAGVKLAENADA----- 227
Query: 274 LITEATFLDDEMSIEHAQQHGHT 296
LI EATF ++ + H H T
Sbjct: 228 LIHEATFSKEQERMAHDYFHSTT 250
>gi|161367564|ref|NP_288846.2| ribonuclease Z [Escherichia coli O157:H7 str. EDL933]
gi|162139773|ref|NP_311183.2| ribonuclease Z [Escherichia coli O157:H7 str. Sakai]
gi|168798441|ref|ZP_02823448.1| ribonuclease Z [Escherichia coli O157:H7 str. EC508]
gi|195935648|ref|ZP_03081030.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4024]
gi|254794164|ref|YP_003079001.1| ribonuclease Z [Escherichia coli O157:H7 str. TW14359]
gi|387883487|ref|YP_006313789.1| ribonuclease Z [Escherichia coli Xuzhou21]
gi|419046228|ref|ZP_13593165.1| ribonuclease Z [Escherichia coli DEC3A]
gi|419051987|ref|ZP_13598859.1| ribonuclease Z [Escherichia coli DEC3B]
gi|419070386|ref|ZP_13616009.1| ribonuclease Z [Escherichia coli DEC3E]
gi|419081473|ref|ZP_13626921.1| ribonuclease Z [Escherichia coli DEC4A]
gi|419110293|ref|ZP_13655351.1| ribonuclease Z [Escherichia coli DEC4F]
gi|420270323|ref|ZP_14772681.1| ribonuclease Z [Escherichia coli PA22]
gi|420276287|ref|ZP_14778571.1| ribonuclease Z [Escherichia coli PA40]
gi|420287589|ref|ZP_14789780.1| ribonuclease Z [Escherichia coli TW10246]
gi|420293229|ref|ZP_14795352.1| ribonuclease Z [Escherichia coli TW11039]
gi|420299101|ref|ZP_14801150.1| ribonuclease Z [Escherichia coli TW09109]
gi|420305007|ref|ZP_14807003.1| ribonuclease Z [Escherichia coli TW10119]
gi|420310505|ref|ZP_14812438.1| ribonuclease Z [Escherichia coli EC1738]
gi|420316085|ref|ZP_14817961.1| ribonuclease Z [Escherichia coli EC1734]
gi|421813240|ref|ZP_16248962.1| ribonuclease Z [Escherichia coli 8.0416]
gi|421819079|ref|ZP_16254577.1| ribonuclease Z [Escherichia coli 10.0821]
gi|421824904|ref|ZP_16260271.1| ribonuclease Z [Escherichia coli FRIK920]
gi|421831807|ref|ZP_16267094.1| ribonuclease Z [Escherichia coli PA7]
gi|423725868|ref|ZP_17699975.1| ribonuclease Z [Escherichia coli PA31]
gi|424078305|ref|ZP_17815308.1| ribonuclease Z [Escherichia coli FDA505]
gi|424084761|ref|ZP_17821271.1| ribonuclease Z [Escherichia coli FDA517]
gi|424091242|ref|ZP_17827187.1| ribonuclease Z [Escherichia coli FRIK1996]
gi|424097821|ref|ZP_17833156.1| ribonuclease Z [Escherichia coli FRIK1985]
gi|424104019|ref|ZP_17838817.1| ribonuclease Z [Escherichia coli FRIK1990]
gi|424110723|ref|ZP_17844980.1| ribonuclease Z [Escherichia coli 93-001]
gi|424116611|ref|ZP_17850474.1| ribonuclease Z [Escherichia coli PA3]
gi|424122826|ref|ZP_17856173.1| ribonuclease Z [Escherichia coli PA5]
gi|424141820|ref|ZP_17873732.1| ribonuclease Z [Escherichia coli PA14]
gi|424148321|ref|ZP_17879705.1| ribonuclease Z [Escherichia coli PA15]
gi|424154126|ref|ZP_17885100.1| ribonuclease Z [Escherichia coli PA24]
gi|424247949|ref|ZP_17890583.1| ribonuclease Z [Escherichia coli PA25]
gi|424324763|ref|ZP_17896506.1| ribonuclease Z [Escherichia coli PA28]
gi|424450512|ref|ZP_17902234.1| ribonuclease Z [Escherichia coli PA32]
gi|424463097|ref|ZP_17913571.1| ribonuclease Z [Escherichia coli PA39]
gi|424469455|ref|ZP_17919301.1| ribonuclease Z [Escherichia coli PA41]
gi|424475995|ref|ZP_17925337.1| ribonuclease Z [Escherichia coli PA42]
gi|424481747|ref|ZP_17930745.1| ribonuclease Z [Escherichia coli TW07945]
gi|424487896|ref|ZP_17936483.1| ribonuclease Z [Escherichia coli TW09098]
gi|424494491|ref|ZP_17942259.1| ribonuclease Z [Escherichia coli TW09195]
gi|424501266|ref|ZP_17948189.1| ribonuclease Z [Escherichia coli EC4203]
gi|424507498|ref|ZP_17953927.1| ribonuclease Z [Escherichia coli EC4196]
gi|424514826|ref|ZP_17959538.1| ribonuclease Z [Escherichia coli TW14313]
gi|424521145|ref|ZP_17965287.1| ribonuclease Z [Escherichia coli TW14301]
gi|424527036|ref|ZP_17970761.1| ribonuclease Z [Escherichia coli EC4421]
gi|424533188|ref|ZP_17976547.1| ribonuclease Z [Escherichia coli EC4422]
gi|424539204|ref|ZP_17982172.1| ribonuclease Z [Escherichia coli EC4013]
gi|424545230|ref|ZP_17987675.1| ribonuclease Z [Escherichia coli EC4402]
gi|424551481|ref|ZP_17993364.1| ribonuclease Z [Escherichia coli EC4439]
gi|424557666|ref|ZP_17999102.1| ribonuclease Z [Escherichia coli EC4436]
gi|424564013|ref|ZP_18005032.1| ribonuclease Z [Escherichia coli EC4437]
gi|424582144|ref|ZP_18021812.1| ribonuclease Z [Escherichia coli EC1863]
gi|425098863|ref|ZP_18501614.1| ribonuclease Z [Escherichia coli 3.4870]
gi|425104992|ref|ZP_18507321.1| ribonuclease Z [Escherichia coli 5.2239]
gi|425126852|ref|ZP_18528047.1| ribonuclease Z [Escherichia coli 8.0586]
gi|425132612|ref|ZP_18533475.1| ribonuclease Z [Escherichia coli 8.2524]
gi|425139078|ref|ZP_18539483.1| ribonuclease Z [Escherichia coli 10.0833]
gi|425150983|ref|ZP_18550616.1| ribonuclease Z [Escherichia coli 88.0221]
gi|425156867|ref|ZP_18556147.1| ribonuclease Z [Escherichia coli PA34]
gi|425163303|ref|ZP_18562198.1| ribonuclease Z [Escherichia coli FDA506]
gi|425169036|ref|ZP_18567520.1| ribonuclease Z [Escherichia coli FDA507]
gi|425175103|ref|ZP_18573232.1| ribonuclease Z [Escherichia coli FDA504]
gi|425181135|ref|ZP_18578841.1| ribonuclease Z [Escherichia coli FRIK1999]
gi|425187399|ref|ZP_18584682.1| ribonuclease Z [Escherichia coli FRIK1997]
gi|425194169|ref|ZP_18590952.1| ribonuclease Z [Escherichia coli NE1487]
gi|425200604|ref|ZP_18596834.1| ribonuclease Z [Escherichia coli NE037]
gi|425207026|ref|ZP_18602838.1| ribonuclease Z [Escherichia coli FRIK2001]
gi|425212789|ref|ZP_18608199.1| ribonuclease Z [Escherichia coli PA4]
gi|425218909|ref|ZP_18613886.1| ribonuclease Z [Escherichia coli PA23]
gi|425225461|ref|ZP_18619938.1| ribonuclease Z [Escherichia coli PA49]
gi|425231725|ref|ZP_18625774.1| ribonuclease Z [Escherichia coli PA45]
gi|425237643|ref|ZP_18631372.1| ribonuclease Z [Escherichia coli TT12B]
gi|425243860|ref|ZP_18637180.1| ribonuclease Z [Escherichia coli MA6]
gi|425255843|ref|ZP_18648378.1| ribonuclease Z [Escherichia coli CB7326]
gi|425295537|ref|ZP_18685754.1| ribonuclease Z [Escherichia coli PA38]
gi|425312201|ref|ZP_18701402.1| ribonuclease Z [Escherichia coli EC1735]
gi|425318149|ref|ZP_18706958.1| ribonuclease Z [Escherichia coli EC1736]
gi|425324250|ref|ZP_18712639.1| ribonuclease Z [Escherichia coli EC1737]
gi|425330532|ref|ZP_18718420.1| ribonuclease Z [Escherichia coli EC1846]
gi|425336696|ref|ZP_18724102.1| ribonuclease Z [Escherichia coli EC1847]
gi|425343103|ref|ZP_18730020.1| ribonuclease Z [Escherichia coli EC1848]
gi|425355200|ref|ZP_18741290.1| ribonuclease Z [Escherichia coli EC1850]
gi|425361160|ref|ZP_18746833.1| ribonuclease Z [Escherichia coli EC1856]
gi|425367334|ref|ZP_18752529.1| ribonuclease Z [Escherichia coli EC1862]
gi|425373708|ref|ZP_18758373.1| ribonuclease Z [Escherichia coli EC1864]
gi|425386555|ref|ZP_18770134.1| ribonuclease Z [Escherichia coli EC1866]
gi|425393277|ref|ZP_18776406.1| ribonuclease Z [Escherichia coli EC1868]
gi|425399373|ref|ZP_18782102.1| ribonuclease Z [Escherichia coli EC1869]
gi|425405454|ref|ZP_18787709.1| ribonuclease Z [Escherichia coli EC1870]
gi|425411856|ref|ZP_18793647.1| ribonuclease Z [Escherichia coli NE098]
gi|425418189|ref|ZP_18799482.1| ribonuclease Z [Escherichia coli FRIK523]
gi|425429519|ref|ZP_18810144.1| ribonuclease Z [Escherichia coli 0.1304]
gi|428947888|ref|ZP_19020194.1| ribonuclease Z [Escherichia coli 88.1467]
gi|428953987|ref|ZP_19025802.1| ribonuclease Z [Escherichia coli 88.1042]
gi|428959924|ref|ZP_19031258.1| ribonuclease Z [Escherichia coli 89.0511]
gi|428966493|ref|ZP_19037271.1| ribonuclease Z [Escherichia coli 90.0091]
gi|428972367|ref|ZP_19042729.1| ribonuclease Z [Escherichia coli 90.0039]
gi|428978806|ref|ZP_19048649.1| ribonuclease Z [Escherichia coli 90.2281]
gi|428984677|ref|ZP_19054088.1| ribonuclease Z [Escherichia coli 93.0055]
gi|428990747|ref|ZP_19059753.1| ribonuclease Z [Escherichia coli 93.0056]
gi|428996548|ref|ZP_19065176.1| ribonuclease Z [Escherichia coli 94.0618]
gi|429002787|ref|ZP_19070948.1| ribonuclease Z [Escherichia coli 95.0183]
gi|429008928|ref|ZP_19076471.1| ribonuclease Z [Escherichia coli 95.1288]
gi|429015373|ref|ZP_19082293.1| ribonuclease Z [Escherichia coli 95.0943]
gi|429021329|ref|ZP_19087867.1| ribonuclease Z [Escherichia coli 96.0428]
gi|429027335|ref|ZP_19093368.1| ribonuclease Z [Escherichia coli 96.0427]
gi|429033542|ref|ZP_19099084.1| ribonuclease Z [Escherichia coli 96.0939]
gi|429039642|ref|ZP_19104774.1| ribonuclease Z [Escherichia coli 96.0932]
gi|429045553|ref|ZP_19110283.1| ribonuclease Z [Escherichia coli 96.0107]
gi|429050946|ref|ZP_19115523.1| ribonuclease Z [Escherichia coli 97.0003]
gi|429056282|ref|ZP_19120628.1| ribonuclease Z [Escherichia coli 97.1742]
gi|429061822|ref|ZP_19125859.1| ribonuclease Z [Escherichia coli 97.0007]
gi|429068123|ref|ZP_19131607.1| ribonuclease Z [Escherichia coli 99.0672]
gi|429074030|ref|ZP_19137293.1| ribonuclease Z [Escherichia coli 99.0678]
gi|429079227|ref|ZP_19142373.1| ribonuclease Z [Escherichia coli 99.0713]
gi|429827228|ref|ZP_19358304.1| ribonuclease Z [Escherichia coli 96.0109]
gi|429833556|ref|ZP_19363949.1| ribonuclease Z [Escherichia coli 97.0010]
gi|444925813|ref|ZP_21245128.1| ribonuclease Z [Escherichia coli 09BKT078844]
gi|444931524|ref|ZP_21250578.1| ribonuclease Z [Escherichia coli 99.0814]
gi|444936931|ref|ZP_21255723.1| ribonuclease Z [Escherichia coli 99.0815]
gi|444942559|ref|ZP_21261092.1| ribonuclease Z [Escherichia coli 99.0816]
gi|444948107|ref|ZP_21266428.1| ribonuclease Z [Escherichia coli 99.0839]
gi|444953628|ref|ZP_21271737.1| ribonuclease Z [Escherichia coli 99.0848]
gi|444964205|ref|ZP_21281835.1| ribonuclease Z [Escherichia coli 99.1775]
gi|444970249|ref|ZP_21287625.1| ribonuclease Z [Escherichia coli 99.1793]
gi|444975509|ref|ZP_21292652.1| ribonuclease Z [Escherichia coli 99.1805]
gi|444980977|ref|ZP_21297896.1| ribonuclease Z [Escherichia coli ATCC 700728]
gi|444986331|ref|ZP_21303123.1| ribonuclease Z [Escherichia coli PA11]
gi|444991628|ref|ZP_21308283.1| ribonuclease Z [Escherichia coli PA19]
gi|444996940|ref|ZP_21313450.1| ribonuclease Z [Escherichia coli PA13]
gi|445002495|ref|ZP_21318894.1| ribonuclease Z [Escherichia coli PA2]
gi|445007994|ref|ZP_21324246.1| ribonuclease Z [Escherichia coli PA47]
gi|445024411|ref|ZP_21340245.1| ribonuclease Z [Escherichia coli 7.1982]
gi|445029682|ref|ZP_21345370.1| ribonuclease Z [Escherichia coli 99.1781]
gi|445035148|ref|ZP_21350689.1| ribonuclease Z [Escherichia coli 99.1762]
gi|445040773|ref|ZP_21356161.1| ribonuclease Z [Escherichia coli PA35]
gi|445045967|ref|ZP_21361231.1| ribonuclease Z [Escherichia coli 3.4880]
gi|445057299|ref|ZP_21372169.1| ribonuclease Z [Escherichia coli 99.0670]
gi|41017568|sp|Q8XCZ0.2|RBN_ECO57 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|189378925|gb|EDU97341.1| ribonuclease Z [Escherichia coli O157:H7 str. EC508]
gi|254593564|gb|ACT72925.1| RNase BN [Escherichia coli O157:H7 str. TW14359]
gi|377893058|gb|EHU57497.1| ribonuclease Z [Escherichia coli DEC3A]
gi|377893672|gb|EHU58106.1| ribonuclease Z [Escherichia coli DEC3B]
gi|377912216|gb|EHU76379.1| ribonuclease Z [Escherichia coli DEC3E]
gi|377926103|gb|EHU90038.1| ribonuclease Z [Escherichia coli DEC4A]
gi|377957175|gb|EHV20711.1| ribonuclease Z [Escherichia coli DEC4F]
gi|386796945|gb|AFJ29979.1| ribonuclease Z [Escherichia coli Xuzhou21]
gi|390641651|gb|EIN21075.1| ribonuclease Z [Escherichia coli FRIK1996]
gi|390643242|gb|EIN22605.1| ribonuclease Z [Escherichia coli FDA517]
gi|390644024|gb|EIN23324.1| ribonuclease Z [Escherichia coli FDA505]
gi|390660584|gb|EIN38282.1| ribonuclease Z [Escherichia coli 93-001]
gi|390662254|gb|EIN39871.1| ribonuclease Z [Escherichia coli FRIK1985]
gi|390663990|gb|EIN41460.1| ribonuclease Z [Escherichia coli FRIK1990]
gi|390677704|gb|EIN53714.1| ribonuclease Z [Escherichia coli PA3]
gi|390680935|gb|EIN56746.1| ribonuclease Z [Escherichia coli PA5]
gi|390700524|gb|EIN74825.1| ribonuclease Z [Escherichia coli PA15]
gi|390701517|gb|EIN75740.1| ribonuclease Z [Escherichia coli PA14]
gi|390713835|gb|EIN86749.1| ribonuclease Z [Escherichia coli PA22]
gi|390722949|gb|EIN95574.1| ribonuclease Z [Escherichia coli PA25]
gi|390724396|gb|EIN96953.1| ribonuclease Z [Escherichia coli PA24]
gi|390727790|gb|EIO00181.1| ribonuclease Z [Escherichia coli PA28]
gi|390742751|gb|EIO13746.1| ribonuclease Z [Escherichia coli PA31]
gi|390742921|gb|EIO13909.1| ribonuclease Z [Escherichia coli PA32]
gi|390757697|gb|EIO27167.1| ribonuclease Z [Escherichia coli PA40]
gi|390767901|gb|EIO36967.1| ribonuclease Z [Escherichia coli PA41]
gi|390768965|gb|EIO37936.1| ribonuclease Z [Escherichia coli PA39]
gi|390769277|gb|EIO38212.1| ribonuclease Z [Escherichia coli PA42]
gi|390790346|gb|EIO57774.1| ribonuclease Z [Escherichia coli TW10246]
gi|390790880|gb|EIO58276.1| ribonuclease Z [Escherichia coli TW07945]
gi|390797315|gb|EIO64571.1| ribonuclease Z [Escherichia coli TW11039]
gi|390806426|gb|EIO73338.1| ribonuclease Z [Escherichia coli TW09098]
gi|390806796|gb|EIO73698.1| ribonuclease Z [Escherichia coli TW09109]
gi|390816029|gb|EIO82541.1| ribonuclease Z [Escherichia coli TW10119]
gi|390826076|gb|EIO91938.1| ribonuclease Z [Escherichia coli EC4203]
gi|390830711|gb|EIO96216.1| ribonuclease Z [Escherichia coli TW09195]
gi|390831412|gb|EIO96789.1| ribonuclease Z [Escherichia coli EC4196]
gi|390846028|gb|EIP09641.1| ribonuclease Z [Escherichia coli TW14301]
gi|390847052|gb|EIP10609.1| ribonuclease Z [Escherichia coli TW14313]
gi|390850435|gb|EIP13810.1| ribonuclease Z [Escherichia coli EC4421]
gi|390861113|gb|EIP23389.1| ribonuclease Z [Escherichia coli EC4422]
gi|390865661|gb|EIP27661.1| ribonuclease Z [Escherichia coli EC4013]
gi|390870929|gb|EIP32388.1| ribonuclease Z [Escherichia coli EC4402]
gi|390878801|gb|EIP39618.1| ribonuclease Z [Escherichia coli EC4439]
gi|390883810|gb|EIP44205.1| ribonuclease Z [Escherichia coli EC4436]
gi|390893762|gb|EIP53301.1| ribonuclease Z [Escherichia coli EC4437]
gi|390899784|gb|EIP59020.1| ribonuclease Z [Escherichia coli EC1738]
gi|390908075|gb|EIP66916.1| ribonuclease Z [Escherichia coli EC1734]
gi|390919378|gb|EIP77731.1| ribonuclease Z [Escherichia coli EC1863]
gi|408064179|gb|EKG98661.1| ribonuclease Z [Escherichia coli PA7]
gi|408067956|gb|EKH02384.1| ribonuclease Z [Escherichia coli FRIK920]
gi|408070946|gb|EKH05301.1| ribonuclease Z [Escherichia coli PA34]
gi|408078891|gb|EKH13019.1| ribonuclease Z [Escherichia coli FDA506]
gi|408082717|gb|EKH16677.1| ribonuclease Z [Escherichia coli FDA507]
gi|408091112|gb|EKH24346.1| ribonuclease Z [Escherichia coli FDA504]
gi|408097160|gb|EKH30059.1| ribonuclease Z [Escherichia coli FRIK1999]
gi|408104281|gb|EKH36603.1| ribonuclease Z [Escherichia coli FRIK1997]
gi|408108510|gb|EKH40513.1| ribonuclease Z [Escherichia coli NE1487]
gi|408115146|gb|EKH46612.1| ribonuclease Z [Escherichia coli NE037]
gi|408121343|gb|EKH52304.1| ribonuclease Z [Escherichia coli FRIK2001]
gi|408127329|gb|EKH57819.1| ribonuclease Z [Escherichia coli PA4]
gi|408137722|gb|EKH67417.1| ribonuclease Z [Escherichia coli PA23]
gi|408139864|gb|EKH69456.1| ribonuclease Z [Escherichia coli PA49]
gi|408146126|gb|EKH75269.1| ribonuclease Z [Escherichia coli PA45]
gi|408155192|gb|EKH83518.1| ribonuclease Z [Escherichia coli TT12B]
gi|408160139|gb|EKH88183.1| ribonuclease Z [Escherichia coli MA6]
gi|408173616|gb|EKI00636.1| ribonuclease Z [Escherichia coli CB7326]
gi|408217552|gb|EKI41794.1| ribonuclease Z [Escherichia coli PA38]
gi|408227534|gb|EKI51120.1| ribonuclease Z [Escherichia coli EC1735]
gi|408238552|gb|EKI61346.1| ribonuclease Z [Escherichia coli EC1736]
gi|408242962|gb|EKI65512.1| ribonuclease Z [Escherichia coli EC1737]
gi|408247193|gb|EKI69410.1| ribonuclease Z [Escherichia coli EC1846]
gi|408256446|gb|EKI77825.1| ribonuclease Z [Escherichia coli EC1847]
gi|408259378|gb|EKI80565.1| ribonuclease Z [Escherichia coli EC1848]
gi|408275134|gb|EKI95116.1| ribonuclease Z [Escherichia coli EC1850]
gi|408277356|gb|EKI97166.1| ribonuclease Z [Escherichia coli EC1856]
gi|408286911|gb|EKJ05816.1| ribonuclease Z [Escherichia coli EC1862]
gi|408291177|gb|EKJ09814.1| ribonuclease Z [Escherichia coli EC1864]
gi|408308096|gb|EKJ25373.1| ribonuclease Z [Escherichia coli EC1866]
gi|408308237|gb|EKJ25513.1| ribonuclease Z [Escherichia coli EC1868]
gi|408319320|gb|EKJ35465.1| ribonuclease Z [Escherichia coli EC1869]
gi|408326021|gb|EKJ41854.1| ribonuclease Z [Escherichia coli EC1870]
gi|408326904|gb|EKJ42673.1| ribonuclease Z [Escherichia coli NE098]
gi|408336684|gb|EKJ51438.1| ribonuclease Z [Escherichia coli FRIK523]
gi|408346260|gb|EKJ60556.1| ribonuclease Z [Escherichia coli 0.1304]
gi|408550167|gb|EKK27512.1| ribonuclease Z [Escherichia coli 5.2239]
gi|408550574|gb|EKK27897.1| ribonuclease Z [Escherichia coli 3.4870]
gi|408569831|gb|EKK45816.1| ribonuclease Z [Escherichia coli 8.0586]
gi|408579548|gb|EKK55001.1| ribonuclease Z [Escherichia coli 10.0833]
gi|408581414|gb|EKK56758.1| ribonuclease Z [Escherichia coli 8.2524]
gi|408596500|gb|EKK70630.1| ribonuclease Z [Escherichia coli 88.0221]
gi|408601064|gb|EKK74880.1| ribonuclease Z [Escherichia coli 8.0416]
gi|408612836|gb|EKK86170.1| ribonuclease Z [Escherichia coli 10.0821]
gi|427205136|gb|EKV75396.1| ribonuclease Z [Escherichia coli 88.1042]
gi|427207513|gb|EKV77682.1| ribonuclease Z [Escherichia coli 89.0511]
gi|427208747|gb|EKV78836.1| ribonuclease Z [Escherichia coli 88.1467]
gi|427222310|gb|EKV91102.1| ribonuclease Z [Escherichia coli 90.0091]
gi|427224589|gb|EKV93294.1| ribonuclease Z [Escherichia coli 90.2281]
gi|427228109|gb|EKV96593.1| ribonuclease Z [Escherichia coli 90.0039]
gi|427242042|gb|EKW09460.1| ribonuclease Z [Escherichia coli 93.0056]
gi|427242643|gb|EKW10046.1| ribonuclease Z [Escherichia coli 93.0055]
gi|427246130|gb|EKW13350.1| ribonuclease Z [Escherichia coli 94.0618]
gi|427261785|gb|EKW27702.1| ribonuclease Z [Escherichia coli 95.0183]
gi|427262141|gb|EKW28046.1| ribonuclease Z [Escherichia coli 95.0943]
gi|427264864|gb|EKW30494.1| ribonuclease Z [Escherichia coli 95.1288]
gi|427276544|gb|EKW41113.1| ribonuclease Z [Escherichia coli 96.0428]
gi|427279738|gb|EKW44149.1| ribonuclease Z [Escherichia coli 96.0427]
gi|427283504|gb|EKW47712.1| ribonuclease Z [Escherichia coli 96.0939]
gi|427292008|gb|EKW55372.1| ribonuclease Z [Escherichia coli 96.0932]
gi|427299248|gb|EKW62223.1| ribonuclease Z [Escherichia coli 96.0107]
gi|427300550|gb|EKW63481.1| ribonuclease Z [Escherichia coli 97.0003]
gi|427313339|gb|EKW75459.1| ribonuclease Z [Escherichia coli 97.1742]
gi|427315765|gb|EKW77748.1| ribonuclease Z [Escherichia coli 97.0007]
gi|427319813|gb|EKW81616.1| ribonuclease Z [Escherichia coli 99.0672]
gi|427328375|gb|EKW89742.1| ribonuclease Z [Escherichia coli 99.0678]
gi|427329213|gb|EKW90544.1| ribonuclease Z [Escherichia coli 99.0713]
gi|429254023|gb|EKY38472.1| ribonuclease Z [Escherichia coli 96.0109]
gi|429255719|gb|EKY40014.1| ribonuclease Z [Escherichia coli 97.0010]
gi|444538412|gb|ELV18278.1| ribonuclease Z [Escherichia coli 99.0814]
gi|444539712|gb|ELV19421.1| ribonuclease Z [Escherichia coli 09BKT078844]
gi|444547615|gb|ELV26190.1| ribonuclease Z [Escherichia coli 99.0815]
gi|444557463|gb|ELV34798.1| ribonuclease Z [Escherichia coli 99.0839]
gi|444558581|gb|ELV35859.1| ribonuclease Z [Escherichia coli 99.0816]
gi|444563640|gb|ELV40629.1| ribonuclease Z [Escherichia coli 99.0848]
gi|444577735|gb|ELV53839.1| ribonuclease Z [Escherichia coli 99.1775]
gi|444579802|gb|ELV55779.1| ribonuclease Z [Escherichia coli 99.1793]
gi|444593505|gb|ELV68714.1| ribonuclease Z [Escherichia coli PA11]
gi|444593772|gb|ELV68979.1| ribonuclease Z [Escherichia coli ATCC 700728]
gi|444595628|gb|ELV70725.1| ribonuclease Z [Escherichia coli 99.1805]
gi|444607166|gb|ELV81752.1| ribonuclease Z [Escherichia coli PA13]
gi|444607497|gb|ELV82073.1| ribonuclease Z [Escherichia coli PA19]
gi|444616021|gb|ELV90197.1| ribonuclease Z [Escherichia coli PA2]
gi|444623894|gb|ELV97804.1| ribonuclease Z [Escherichia coli PA47]
gi|444638759|gb|ELW12086.1| ribonuclease Z [Escherichia coli 7.1982]
gi|444642017|gb|ELW15233.1| ribonuclease Z [Escherichia coli 99.1781]
gi|444645389|gb|ELW18458.1| ribonuclease Z [Escherichia coli 99.1762]
gi|444654598|gb|ELW27254.1| ribonuclease Z [Escherichia coli PA35]
gi|444660264|gb|ELW32637.1| ribonuclease Z [Escherichia coli 3.4880]
gi|444670048|gb|ELW41982.1| ribonuclease Z [Escherichia coli 99.0670]
Length = 305
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|199598729|ref|ZP_03212143.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Lactobacillus rhamnosus HN001]
gi|258508359|ref|YP_003171110.1| ribonuclease Z [Lactobacillus rhamnosus GG]
gi|385828028|ref|YP_005865800.1| hydrolase [Lactobacillus rhamnosus GG]
gi|418070578|ref|ZP_12707853.1| ribonuclease Z [Lactobacillus rhamnosus R0011]
gi|421768996|ref|ZP_16205705.1| Ribonuclease Z [Lactobacillus rhamnosus LRHMDP2]
gi|421771259|ref|ZP_16207919.1| Ribonuclease Z [Lactobacillus rhamnosus LRHMDP3]
gi|423078100|ref|ZP_17066787.1| ribonuclease Z [Lactobacillus rhamnosus ATCC 21052]
gi|199590417|gb|EDY98509.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Lactobacillus rhamnosus HN001]
gi|257148286|emb|CAR87259.1| Ribonuclease Z [Lactobacillus rhamnosus GG]
gi|259649673|dbj|BAI41835.1| hydrolase [Lactobacillus rhamnosus GG]
gi|357539998|gb|EHJ24015.1| ribonuclease Z [Lactobacillus rhamnosus R0011]
gi|357552480|gb|EHJ34253.1| ribonuclease Z [Lactobacillus rhamnosus ATCC 21052]
gi|411185392|gb|EKS52520.1| Ribonuclease Z [Lactobacillus rhamnosus LRHMDP2]
gi|411185845|gb|EKS52971.1| Ribonuclease Z [Lactobacillus rhamnosus LRHMDP3]
Length = 319
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 97/226 (42%), Gaps = 45/226 (19%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G I Q VFITH H DHI GLP ++ASR +P TI+ PP
Sbjct: 36 FDVGEGTQHQILQTTIKPRKIAKVFITHLHGDHIFGLPGFLASRANQGGTEPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDL-----VALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
I++ V+ ++ +S + + L V D +T+++ D + H I S G+
Sbjct: 96 IEDFVKTSLKVSQSHLSYAIKFVLLRHPGVIFD-DQTFKVSFD------RLDHRITSFGF 148
Query: 210 VI-------YLLRKKLKKQ-------YIHLK-GKQIEKLKKSGVEITDIILSPE----VA 250
+ LL K++ Y LK GK + + D I S + VA
Sbjct: 149 RVEEKPHPGELLIDKVRAAKIPAGPVYASLKAGKTVTLPDGRTFDGHDFIGSAQPGRTVA 208
Query: 251 FTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHT 296
GDT M A A +L+ E+TF DE + A+Q+ H+
Sbjct: 209 IFGDTR---MCRRALPLAAGADVLVHESTFGPDESQL--AKQYYHS 249
>gi|161950082|ref|YP_404026.2| ribonuclease Z [Shigella dysenteriae Sd197]
gi|309785029|ref|ZP_07679662.1| ribonuclease Z [Shigella dysenteriae 1617]
gi|308927399|gb|EFP72873.1| ribonuclease Z [Shigella dysenteriae 1617]
Length = 305
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|414881435|tpg|DAA58566.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 558
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 43/195 (22%)
Query: 98 PELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN---LKPPTIFVPPS 154
P+ A P + V ITH H+DHIG LP + G + + PT + P
Sbjct: 45 PDFARALAAWGAPDFTTAISCVVITHFHMDHIGALPYFTEVCGYHGPIYMTYPTKALAPF 104
Query: 155 IKEDVEKLF------EIHRSLGNVELNLDLVA-LDVGETYEMRNDIVVRPFKTHHVIPSQ 207
+ ED K+ E S ++ + V +D+ +T ++ D+V+R + HVI +
Sbjct: 105 MLEDYRKVTMGQRGEEKQYSYEDILRCMKKVTPMDLKQTVQVDKDLVIRAYYAGHVIGAA 164
Query: 208 GYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD--TTSEFMLNPRN 265
+IY ++ D + +TGD T + L
Sbjct: 165 --MIY-------------------------AKVGDAAM----VYTGDYNMTPDRHLGAAQ 193
Query: 266 ADALRAKILITEATF 280
D L+ +LITE+T+
Sbjct: 194 IDRLKLDVLITESTY 208
>gi|377809591|ref|YP_005004812.1| ribonuclease Z [Pediococcus claussenii ATCC BAA-344]
gi|361056332|gb|AEV95136.1| ribonuclease Z [Pediococcus claussenii ATCC BAA-344]
Length = 309
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R R + + +FITH H DHI GLP +++SR TI+ P IK+ V L +
Sbjct: 48 RTNLRPRKIDKIFITHLHGDHIFGLPGFLSSRSFQGGDGKLTIYGPRGIKDFV--LTSLK 105
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK 226
S + +D LD + +VR K H I S GY I ++ H
Sbjct: 106 ISDTRLGYKIDFHELDNDGEILNNDKFIVRAEKLDHRILSFGYRI--------EEKAHQG 157
Query: 227 GKQIEKLKKSGV 238
Q+EKLK+ +
Sbjct: 158 ELQVEKLKEMNI 169
>gi|302793925|ref|XP_002978727.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
gi|300153536|gb|EFJ20174.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
Length = 522
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 43/176 (24%)
Query: 117 NFVFITHGHLDHIGGLPMY---VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHR------ 167
+ V +TH HLDH+G LP + G + PT + P + ED K+ R
Sbjct: 58 DCVIVTHFHLDHVGALPYFTEVCGYEGPVYMTYPTKALAPIMLEDYRKIMVDRRGEEEQF 117
Query: 168 -SLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK 226
+L + ++A+D+ +T + D+ R + HV+ + + +
Sbjct: 118 STLHIQQCMKKVIAVDLRQTIRVSKDLAFRAYYAGHVLGAAMFYV--------------- 162
Query: 227 GKQIEKLKKSGVEITDIILSPEVAFTGD--TTSEFMLNPRNADALRAKILITEATF 280
K+G + V +TGD T + L D L+ +LITE+T+
Sbjct: 163 --------KAG--------NSTVVYTGDYNMTPDRHLGAAQIDRLKPDLLITESTY 202
>gi|449116236|ref|ZP_21752687.1| ribonuclease Z [Treponema denticola H-22]
gi|448954123|gb|EMB34906.1| ribonuclease Z [Treponema denticola H-22]
Length = 308
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPS 154
FD G R R + N +FI+H H DHI GLP + + S + P I PP
Sbjct: 35 FDCGEGTQVALRRLNLRWKRINAIFISHTHADHITGLPGLLMLSSQVDREDPLYIIGPPK 94
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGE--TYEMRNDIVVRPFKTHHVIPSQGYVI 211
+ E V E R + ++ +N +++ ++ E + VR F H P GY
Sbjct: 95 VAEYV----ETSRKVLDMYINYEIIVKEIKEPGVVYSTEEFQVRSFWLDHTKPCMGYTF 149
>gi|187775772|ref|ZP_02798010.2| ribonuclease Z [Escherichia coli O157:H7 str. EC4196]
gi|188024686|ref|ZP_02773142.2| ribonuclease Z [Escherichia coli O157:H7 str. EC4113]
gi|189010153|ref|ZP_02805133.2| ribonuclease Z [Escherichia coli O157:H7 str. EC4076]
gi|189402100|ref|ZP_02780030.2| ribonuclease Z [Escherichia coli O157:H7 str. EC4401]
gi|189403064|ref|ZP_02792904.2| ribonuclease Z [Escherichia coli O157:H7 str. EC4486]
gi|189403973|ref|ZP_02786297.2| ribonuclease Z [Escherichia coli O157:H7 str. EC4501]
gi|189404940|ref|ZP_02812186.2| ribonuclease Z [Escherichia coli O157:H7 str. EC869]
gi|208807104|ref|ZP_03249441.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4206]
gi|208813769|ref|ZP_03255098.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4045]
gi|208820905|ref|ZP_03261225.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4042]
gi|209398284|ref|YP_002271681.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4115]
gi|217327312|ref|ZP_03443395.1| ribonuclease Z [Escherichia coli O157:H7 str. TW14588]
gi|261223275|ref|ZP_05937556.1| ribonuclease Z [Escherichia coli O157:H7 str. FRIK2000]
gi|261259175|ref|ZP_05951708.1| ribonuclease Z [Escherichia coli O157:H7 str. FRIK966]
gi|416310945|ref|ZP_11656680.1| Ribonuclease Z [Escherichia coli O157:H7 str. 1044]
gi|416318161|ref|ZP_11660871.1| Ribonuclease Z [Escherichia coli O157:H7 str. EC1212]
gi|416330613|ref|ZP_11669563.1| Ribonuclease Z [Escherichia coli O157:H7 str. 1125]
gi|452971910|ref|ZP_21970137.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4009]
gi|12516619|gb|AAG57401.1|AE005459_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|13362626|dbj|BAB36579.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|187771348|gb|EDU35192.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4196]
gi|188017272|gb|EDU55394.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4113]
gi|189001979|gb|EDU70965.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4076]
gi|189357705|gb|EDU76124.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4401]
gi|189362942|gb|EDU81361.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4486]
gi|189368351|gb|EDU86767.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4501]
gi|189372855|gb|EDU91271.1| ribonuclease Z [Escherichia coli O157:H7 str. EC869]
gi|208726905|gb|EDZ76506.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4206]
gi|208735046|gb|EDZ83733.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4045]
gi|208741028|gb|EDZ88710.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4042]
gi|209159684|gb|ACI37117.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4115]
gi|209765220|gb|ACI80922.1| hypothetical protein ECs3156 [Escherichia coli]
gi|209765222|gb|ACI80923.1| hypothetical protein ECs3156 [Escherichia coli]
gi|209765226|gb|ACI80925.1| hypothetical protein ECs3156 [Escherichia coli]
gi|217319679|gb|EEC28104.1| ribonuclease Z [Escherichia coli O157:H7 str. TW14588]
gi|320192108|gb|EFW66753.1| Ribonuclease Z [Escherichia coli O157:H7 str. EC1212]
gi|326339622|gb|EGD63433.1| Ribonuclease Z [Escherichia coli O157:H7 str. 1125]
gi|326344084|gb|EGD67845.1| Ribonuclease Z [Escherichia coli O157:H7 str. 1044]
Length = 311
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 156
>gi|339490858|ref|YP_004705363.1| metal-dependent hydrolase of the beta-lactamase superfamily III
[Leuconostoc sp. C2]
gi|338852530|gb|AEJ30740.1| metal-dependent hydrolase of the beta-lactamase superfamily
III(putative) [Leuconostoc sp. C2]
Length = 314
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 38/224 (16%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + + FI+H H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTIRPRKVEKIFISHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI- 211
+KE V+ I + + + L G +E + V+ K H I + GY +
Sbjct: 96 KGVKEYVQTALRISET--RLSYPIVYAELKEGVIFEDKTFRVIGA-KMRHRIETWGYRVE 152
Query: 212 ------YLLRKKLKKQYI-------HLKGKQIEKLKKSGV-EITDIILSPEVAFTGDTTS 257
LL KL+++ I LK ++ L V + D I + +
Sbjct: 153 EKDHPGELLVDKLRQENIPSGPIFGQLKAGKVVTLPDGRVLDGQDYIGARQKG----RVV 208
Query: 258 EFMLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHT 296
F+L+ R D A A +L+ E+T+ E + A+ H H+
Sbjct: 209 TFILDTRPNDNVEILADHADVLVHESTYGAGEEEAKMARAHAHS 252
>gi|225010713|ref|ZP_03701182.1| ribonuclease Z [Flavobacteria bacterium MS024-3C]
gi|225005084|gb|EEG43037.1| ribonuclease Z [Flavobacteria bacterium MS024-3C]
Length = 301
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 22/196 (11%)
Query: 117 NFVFITHGHLDHIGGLPMYVAS-RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FI+H H DH GLP VA+ R L + P I+ P IKE V L ++ S N L+
Sbjct: 54 NHIFISHLHGDHFFGLPGLVATFRLLGRVNPLHIYGPKGIKEAVTLLLKLGDSWTNYPLH 113
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY--LLRKKLKKQYIHLKG------ 227
++ E + V H + + G++ + +KL+ Q + G
Sbjct: 114 FHELSSQAPEVVFEDKKVTVTTIPLDHRVYTNGFLFREKVGSRKLEAQAVEAHGIDSCYF 173
Query: 228 KQIEKLK----KSGVEITDIILSPE------VAFTGDTTSEFMLNPRNADALRAKILITE 277
+ I+ K K+G I + LS + AF DT A +L E
Sbjct: 174 QNIKDGKDAPNKAGEIIPNAQLSSDPKPTKSYAFCSDTA---YFPKIIAQIKEVTVLYHE 230
Query: 278 ATFLDDEMSIEHAQQH 293
+TFL+ E + +H
Sbjct: 231 STFLESESDLATKTKH 246
>gi|222099215|ref|YP_002533783.1| Beta-lactamase domain protein [Thermotoga neapolitana DSM 4359]
gi|221571605|gb|ACM22417.1| Beta-lactamase domain protein [Thermotoga neapolitana DSM 4359]
Length = 254
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNV 172
++ + +FITHGH+DH+ GLP + L K P +I+V VEKL ++ +
Sbjct: 51 LELDAIFITHGHVDHVYGLPSLLEMMRLNGRKRPLSIYVGEDFLVLVEKLLDLFEIANHP 110
Query: 173 E-LNLDLVALDVGETYEMRNDIVVRPFKTHHVI 204
+ +DL LD + D+++ F +H +
Sbjct: 111 DSFKIDLFGLDYKSSLFRVKDLMIETFPVNHTV 143
>gi|387888598|ref|YP_006318896.1| ribonuclease Z [Escherichia blattae DSM 4481]
gi|414592667|ref|ZP_11442316.1| ribonuclease BN [Escherichia blattae NBRC 105725]
gi|386923431|gb|AFJ46385.1| ribonuclease Z [Escherichia blattae DSM 4481]
gi|403196148|dbj|GAB79968.1| ribonuclease BN [Escherichia blattae NBRC 105725]
Length = 304
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 94/225 (41%), Gaps = 41/225 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P T++ PP ++E V+ + S + LD
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGGSGPLTLYGPPGLREYVQLSLTMSGSW--TDYPLD 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY----------------------LLR 215
+V + G ++ + VR +H + GY + L +
Sbjct: 117 IVEVSEGVIFD-DGEFEVRCVALNHPVVCFGYRVSAHDKPGALDAAALSASGVPPGPLFQ 175
Query: 216 KKLKKQYIHLK-GKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKIL 274
+ + + + L+ G+ I+ + G + VA GDT L+ A A +L
Sbjct: 176 RLKRGETVQLEDGRWIDGRQYIGQPVK----GKSVAIFGDTAP---LDSARLLAAEADML 228
Query: 275 ITEATFLDDEMSI-EHAQQHGHTHLSEDIRQAVLKLQSKVSAKVV 318
+ EAT E S+ + A GH + ++ A L ++ V V+
Sbjct: 229 VHEATL---EASLAQKANSRGH---ATTVQAATLAREAGVKTLVI 267
>gi|291283514|ref|YP_003500332.1| ribonuclease Z [Escherichia coli O55:H7 str. CB9615]
gi|331653711|ref|ZP_08354712.1| ribonuclease Z [Escherichia coli M718]
gi|416775553|ref|ZP_11874393.1| ribonuclease Z [Escherichia coli O157:H7 str. G5101]
gi|416787213|ref|ZP_11879301.1| ribonuclease Z [Escherichia coli O157:H- str. 493-89]
gi|416798869|ref|ZP_11884218.1| ribonuclease Z [Escherichia coli O157:H- str. H 2687]
gi|416809240|ref|ZP_11888903.1| ribonuclease Z [Escherichia coli O55:H7 str. 3256-97]
gi|416819772|ref|ZP_11893462.1| ribonuclease Z [Escherichia coli O55:H7 str. USDA 5905]
gi|416830676|ref|ZP_11898749.1| ribonuclease Z [Escherichia coli O157:H7 str. LSU-61]
gi|421774460|ref|ZP_16211072.1| ribonuclease Z [Escherichia coli AD30]
gi|209765218|gb|ACI80921.1| hypothetical protein ECs3156 [Escherichia coli]
gi|209765224|gb|ACI80924.1| hypothetical protein ECs3156 [Escherichia coli]
gi|290763387|gb|ADD57348.1| ribonuclease Z [Escherichia coli O55:H7 str. CB9615]
gi|320641098|gb|EFX10577.1| ribonuclease Z [Escherichia coli O157:H7 str. G5101]
gi|320646486|gb|EFX15405.1| ribonuclease Z [Escherichia coli O157:H- str. 493-89]
gi|320651583|gb|EFX19963.1| ribonuclease Z [Escherichia coli O157:H- str. H 2687]
gi|320657335|gb|EFX25137.1| ribonuclease Z [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320663037|gb|EFX30354.1| ribonuclease Z [Escherichia coli O55:H7 str. USDA 5905]
gi|320667854|gb|EFX34762.1| ribonuclease Z [Escherichia coli O157:H7 str. LSU-61]
gi|331048560|gb|EGI20636.1| ribonuclease Z [Escherichia coli M718]
gi|408460208|gb|EKJ83987.1| ribonuclease Z [Escherichia coli AD30]
Length = 311
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 156
>gi|432584524|ref|ZP_19820918.1| ribonuclease Z [Escherichia coli KTE57]
gi|431115883|gb|ELE19377.1| ribonuclease Z [Escherichia coli KTE57]
Length = 305
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + G+ ++ +R V + H + GY I
Sbjct: 118 IVEIGAGDIFDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|420165501|ref|ZP_14672192.1| ribonuclease Z [Staphylococcus epidermidis NIHLM088]
gi|394235302|gb|EJD80874.1| ribonuclease Z [Staphylococcus epidermidis NIHLM088]
Length = 306
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVI 211
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYPITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRI 150
>gi|417672982|ref|ZP_12322440.1| ribonuclease Z [Shigella dysenteriae 155-74]
gi|417690398|ref|ZP_12339620.1| ribonuclease Z [Shigella boydii 5216-82]
gi|332088400|gb|EGI93518.1| ribonuclease Z [Shigella boydii 5216-82]
gi|332090756|gb|EGI95849.1| ribonuclease Z [Shigella dysenteriae 155-74]
Length = 305
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|57866978|ref|YP_188643.1| AtsA/ElaC family protein [Staphylococcus epidermidis RP62A]
gi|293366536|ref|ZP_06613213.1| ribonuclease Z [Staphylococcus epidermidis M23864:W2(grey)]
gi|417659675|ref|ZP_12309275.1| ribonuclease Z [Staphylococcus epidermidis VCU045]
gi|417908627|ref|ZP_12552384.1| ribonuclease Z [Staphylococcus epidermidis VCU037]
gi|417912271|ref|ZP_12555966.1| ribonuclease Z [Staphylococcus epidermidis VCU105]
gi|418605787|ref|ZP_13169094.1| ribonuclease Z [Staphylococcus epidermidis VCU041]
gi|418613296|ref|ZP_13176310.1| ribonuclease Z [Staphylococcus epidermidis VCU117]
gi|418616208|ref|ZP_13179133.1| ribonuclease Z [Staphylococcus epidermidis VCU120]
gi|418621838|ref|ZP_13184603.1| ribonuclease Z [Staphylococcus epidermidis VCU123]
gi|418625083|ref|ZP_13187741.1| ribonuclease Z [Staphylococcus epidermidis VCU125]
gi|418627723|ref|ZP_13190293.1| ribonuclease Z [Staphylococcus epidermidis VCU126]
gi|418629145|ref|ZP_13191659.1| ribonuclease Z [Staphylococcus epidermidis VCU127]
gi|419769414|ref|ZP_14295508.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-250]
gi|419771738|ref|ZP_14297784.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-K]
gi|420170215|ref|ZP_14676776.1| ribonuclease Z [Staphylococcus epidermidis NIHLM070]
gi|420172556|ref|ZP_14679055.1| ribonuclease Z [Staphylococcus epidermidis NIHLM067]
gi|420183166|ref|ZP_14689299.1| ribonuclease Z [Staphylococcus epidermidis NIHLM049]
gi|420187293|ref|ZP_14693314.1| ribonuclease Z [Staphylococcus epidermidis NIHLM039]
gi|420194801|ref|ZP_14700598.1| ribonuclease Z [Staphylococcus epidermidis NIHLM021]
gi|420197384|ref|ZP_14703108.1| ribonuclease Z [Staphylococcus epidermidis NIHLM020]
gi|420201633|ref|ZP_14707243.1| ribonuclease Z [Staphylococcus epidermidis NIHLM018]
gi|420206178|ref|ZP_14711688.1| ribonuclease Z [Staphylococcus epidermidis NIHLM008]
gi|420209009|ref|ZP_14714447.1| ribonuclease Z [Staphylococcus epidermidis NIHLM003]
gi|420211167|ref|ZP_14716541.1| ribonuclease Z [Staphylococcus epidermidis NIHLM001]
gi|420213963|ref|ZP_14719243.1| ribonuclease Z [Staphylococcus epidermidis NIH05005]
gi|420215960|ref|ZP_14721185.1| ribonuclease Z [Staphylococcus epidermidis NIH05001]
gi|420219162|ref|ZP_14724196.1| ribonuclease Z [Staphylococcus epidermidis NIH04008]
gi|420221710|ref|ZP_14726637.1| ribonuclease Z [Staphylococcus epidermidis NIH08001]
gi|420225700|ref|ZP_14730527.1| ribonuclease Z [Staphylococcus epidermidis NIH06004]
gi|420227288|ref|ZP_14732060.1| ribonuclease Z [Staphylococcus epidermidis NIH05003]
gi|420229607|ref|ZP_14734313.1| ribonuclease Z [Staphylococcus epidermidis NIH04003]
gi|420232021|ref|ZP_14736663.1| ribonuclease Z [Staphylococcus epidermidis NIH051668]
gi|76363382|sp|Q5HP47.1|RNZ_STAEQ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|57637636|gb|AAW54424.1| AtsA/ElaC family protein [Staphylococcus epidermidis RP62A]
gi|291319305|gb|EFE59674.1| ribonuclease Z [Staphylococcus epidermidis M23864:W2(grey)]
gi|329735312|gb|EGG71604.1| ribonuclease Z [Staphylococcus epidermidis VCU045]
gi|341651282|gb|EGS75087.1| ribonuclease Z [Staphylococcus epidermidis VCU105]
gi|341655988|gb|EGS79711.1| ribonuclease Z [Staphylococcus epidermidis VCU037]
gi|374401490|gb|EHQ72563.1| ribonuclease Z [Staphylococcus epidermidis VCU041]
gi|374816231|gb|EHR80438.1| ribonuclease Z [Staphylococcus epidermidis VCU117]
gi|374821034|gb|EHR85101.1| ribonuclease Z [Staphylococcus epidermidis VCU120]
gi|374825971|gb|EHR89887.1| ribonuclease Z [Staphylococcus epidermidis VCU125]
gi|374828266|gb|EHR92105.1| ribonuclease Z [Staphylococcus epidermidis VCU123]
gi|374828870|gb|EHR92693.1| ribonuclease Z [Staphylococcus epidermidis VCU126]
gi|374834576|gb|EHR98215.1| ribonuclease Z [Staphylococcus epidermidis VCU127]
gi|383358033|gb|EID35494.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-250]
gi|383360557|gb|EID37952.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-K]
gi|394240553|gb|EJD85976.1| ribonuclease Z [Staphylococcus epidermidis NIHLM070]
gi|394241717|gb|EJD87126.1| ribonuclease Z [Staphylococcus epidermidis NIHLM067]
gi|394249629|gb|EJD94842.1| ribonuclease Z [Staphylococcus epidermidis NIHLM049]
gi|394256272|gb|EJE01205.1| ribonuclease Z [Staphylococcus epidermidis NIHLM039]
gi|394263861|gb|EJE08582.1| ribonuclease Z [Staphylococcus epidermidis NIHLM021]
gi|394266191|gb|EJE10837.1| ribonuclease Z [Staphylococcus epidermidis NIHLM020]
gi|394271901|gb|EJE16380.1| ribonuclease Z [Staphylococcus epidermidis NIHLM018]
gi|394278017|gb|EJE22334.1| ribonuclease Z [Staphylococcus epidermidis NIHLM008]
gi|394279237|gb|EJE23545.1| ribonuclease Z [Staphylococcus epidermidis NIHLM003]
gi|394281620|gb|EJE25846.1| ribonuclease Z [Staphylococcus epidermidis NIHLM001]
gi|394283885|gb|EJE28046.1| ribonuclease Z [Staphylococcus epidermidis NIH05005]
gi|394290336|gb|EJE34200.1| ribonuclease Z [Staphylococcus epidermidis NIH08001]
gi|394290860|gb|EJE34705.1| ribonuclease Z [Staphylococcus epidermidis NIH04008]
gi|394292956|gb|EJE36689.1| ribonuclease Z [Staphylococcus epidermidis NIH05001]
gi|394293134|gb|EJE36857.1| ribonuclease Z [Staphylococcus epidermidis NIH06004]
gi|394297378|gb|EJE40979.1| ribonuclease Z [Staphylococcus epidermidis NIH05003]
gi|394299373|gb|EJE42924.1| ribonuclease Z [Staphylococcus epidermidis NIH04003]
gi|394301743|gb|EJE45197.1| ribonuclease Z [Staphylococcus epidermidis NIH051668]
Length = 306
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVI 211
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYPITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRI 150
>gi|300855840|ref|YP_003780824.1| ribonuclease Z [Clostridium ljungdahlii DSM 13528]
gi|300435955|gb|ADK15722.1| ribonuclease Z [Clostridium ljungdahlii DSM 13528]
Length = 303
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 31/212 (14%)
Query: 109 CPTRAIQQNFVFITHGHLDHIGGLP---MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI 165
C + I + + TH H DHI GLP + +A+ G N+ P TI P +++ +E L I
Sbjct: 49 CKIKNI--DVILFTHFHADHIAGLPGLLLTIANSG-RNM-PITIIGPIGLRKVIEGLMVI 104
Query: 166 HRSLGNVELNLDLVALDVGETY-EMRNDIVVRPFKTHHVIPSQGYVIYLLR-------KK 217
L +++L+ L E+Y E D + H +P Y I + R K
Sbjct: 105 APVL---PYSINLLELCGKESYFEKIGDFNIDVLPVDHGMPCFAYSIGVDRNRKFDRDKA 161
Query: 218 LKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTS----EFMLNPRNADAL---- 269
LK Q + +++K +K +E + I +PE+ GD S + + R L
Sbjct: 162 LKNQVPLILWNRLQKGEK--IEYGEKIYTPEMVL-GDKRSGLKVSYCTDSRPTHELAQFV 218
Query: 270 -RAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
++ + I E + +DE +I A Q+ H SE
Sbjct: 219 EKSDVFICEGMYGEDE-NISKAIQYKHMLFSE 249
>gi|315231971|ref|YP_004072407.1| ribonuclease Z [Thermococcus barophilus MP]
gi|315184999|gb|ADT85184.1| ribonuclease Z [Thermococcus barophilus MP]
Length = 307
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 38/191 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L+N KP I+ P E ++ + G + +
Sbjct: 57 IFITHFHGDHYLGLMSLIQTMTLWNREKPLHIYGPKYTFEFIQNYLKS----GFFAPSFE 112
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK---------GK 228
+ ++GE D + FK H IP+ GYV ++K K+ +L+ G
Sbjct: 113 IHVHELGEARLKFGDYEIWSFKVEHGIPALGYV---FKEKDKRGNFNLEKIRELGLKPGP 169
Query: 229 QIEKLKKSG-VEITDIILSPE-----------VAFTGDTTSEFMLNPRNADAL---RAKI 273
+++L+ G +EI + E V +TGDT P L RA +
Sbjct: 170 WMKELELKGKIEINGRTIYLEDVTGERRRGVKVVYTGDT------EPCKRIELFSERADL 223
Query: 274 LITEATFLDDE 284
LI EAT+L E
Sbjct: 224 LIYEATYLTGE 234
>gi|152976548|ref|YP_001376065.1| ribonuclease Z [Bacillus cytotoxicus NVH 391-98]
gi|189043779|sp|A7GSG2.1|RNZ_BACCN RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|152025300|gb|ABS23070.1| ribonuclease Z [Bacillus cytotoxicus NVH 391-98]
Length = 307
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 42/221 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P I++ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIEQFIEVALSV--STTHVKYPLE 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYI------ 223
+V + + G +E + V + H I GY I LL +KL++ +
Sbjct: 117 IVEITEEGIVFEDKQ-FYVETKRLSHGIECFGYRIVEKDIQGPLLVEKLREANVKPGPIF 175
Query: 224 -HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AK 272
LK +I +L+ V + D I P+ + GDT R DA R A
Sbjct: 176 KRLKDGEIVELEDGRVLDGKDFIGPPQKGRIITILGDT--------RYCDASRILAQDAD 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
+L+ EATF + + Q H + H + + + A + L++ V
Sbjct: 228 VLVHEATF----AAADQTQAHDYFHSTTE-QAARIALEANV 263
>gi|194433318|ref|ZP_03065598.1| ribonuclease Z [Shigella dysenteriae 1012]
gi|416286493|ref|ZP_11648392.1| Ribonuclease Z [Shigella boydii ATCC 9905]
gi|194418412|gb|EDX34501.1| ribonuclease Z [Shigella dysenteriae 1012]
gi|320178758|gb|EFW53721.1| Ribonuclease Z [Shigella boydii ATCC 9905]
Length = 311
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 156
>gi|218899304|ref|YP_002447715.1| ribonuclease Z [Bacillus cereus G9842]
gi|228902652|ref|ZP_04066803.1| Ribonuclease Z [Bacillus thuringiensis IBL 4222]
gi|228941303|ref|ZP_04103856.1| Ribonuclease Z [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228967182|ref|ZP_04128218.1| Ribonuclease Z [Bacillus thuringiensis serovar sotto str. T04001]
gi|228974235|ref|ZP_04134805.1| Ribonuclease Z [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228980826|ref|ZP_04141131.1| Ribonuclease Z [Bacillus thuringiensis Bt407]
gi|384188212|ref|YP_005574108.1| ribonuclease Z [Bacillus thuringiensis serovar chinensis CT-43]
gi|402564447|ref|YP_006607171.1| ribonuclease Z [Bacillus thuringiensis HD-771]
gi|410676530|ref|YP_006928901.1| ribonuclease Z [Bacillus thuringiensis Bt407]
gi|423385645|ref|ZP_17362901.1| ribonuclease Z [Bacillus cereus BAG1X1-2]
gi|423527999|ref|ZP_17504444.1| ribonuclease Z [Bacillus cereus HuB1-1]
gi|423561383|ref|ZP_17537659.1| ribonuclease Z [Bacillus cereus MSX-A1]
gi|434377249|ref|YP_006611893.1| ribonuclease Z [Bacillus thuringiensis HD-789]
gi|452200602|ref|YP_007480683.1| Ribonuclease Z [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
gi|254808608|sp|B7IWQ5.1|RNZ_BACC2 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|218543591|gb|ACK95985.1| ribonuclease Z [Bacillus cereus G9842]
gi|228778995|gb|EEM27257.1| Ribonuclease Z [Bacillus thuringiensis Bt407]
gi|228785575|gb|EEM33584.1| Ribonuclease Z [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228792551|gb|EEM40117.1| Ribonuclease Z [Bacillus thuringiensis serovar sotto str. T04001]
gi|228818462|gb|EEM64534.1| Ribonuclease Z [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228857093|gb|EEN01602.1| Ribonuclease Z [Bacillus thuringiensis IBL 4222]
gi|326941921|gb|AEA17817.1| ribonuclease Z [Bacillus thuringiensis serovar chinensis CT-43]
gi|401201640|gb|EJR08505.1| ribonuclease Z [Bacillus cereus MSX-A1]
gi|401635701|gb|EJS53456.1| ribonuclease Z [Bacillus cereus BAG1X1-2]
gi|401793099|gb|AFQ19138.1| ribonuclease Z [Bacillus thuringiensis HD-771]
gi|401875806|gb|AFQ27973.1| ribonuclease Z [Bacillus thuringiensis HD-789]
gi|402451662|gb|EJV83481.1| ribonuclease Z [Bacillus cereus HuB1-1]
gi|409175659|gb|AFV19964.1| ribonuclease Z [Bacillus thuringiensis Bt407]
gi|452105995|gb|AGG02935.1| Ribonuclease Z [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
Length = 307
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 96/222 (43%), Gaps = 30/222 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V + T N+ V + H I GY I LL KL + + +K I
Sbjct: 117 VVEITEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDKLLE--MGVKPGPI 174
Query: 231 EKLKKSG--VEITDIILSPEVAFTGDTTSEFML----NPRNADALR-----AKILITEAT 279
K K G VE+ D + F G ++ + R +A R A +L+ EAT
Sbjct: 175 FKRLKDGEVVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 280 FLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
F ++ +Q H + +QA + + +AK + LT
Sbjct: 235 FAAED------EQQAHDYFHSTSKQAA-SIALQANAKRLILT 269
>gi|398837097|ref|ZP_10594409.1| low-affinity cAMP phosphodiesterase [Herbaspirillum sp. YR522]
gi|398209391|gb|EJM96066.1| low-affinity cAMP phosphodiesterase [Herbaspirillum sp. YR522]
Length = 257
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 74/186 (39%), Gaps = 41/186 (22%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEK-LFEIHRSLGNVELN 175
+ VFITH HLDHI LP+ V S G P T+ E + + +F H ++
Sbjct: 48 DHVFITHAHLDHIACLPLMVDSVGDMRRTPITVHATGETLEIIRRHIFNWHIWPDFSQIP 107
Query: 176 ------LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQ 229
L +++G+ ++ + P H +P+ GY HL
Sbjct: 108 TPQAPFLRFTTIELGQPVQLGQRSIT-PLPAMHTVPAVGY--------------HLHD-- 150
Query: 230 IEKLKKSGVEITDIILSPEVAFTGDTTS-EFMLNPRNA-DALRAKILITEATFLDDEMSI 287
SG + AF+GDTT+ E + NA D LR LI EA F D E +
Sbjct: 151 ----HDSGASL---------AFSGDTTTCEPLWEAVNAIDDLR--YLIIEAAFADCERDL 195
Query: 288 EHAQQH 293
+H
Sbjct: 196 ALLSKH 201
>gi|418411915|ref|ZP_12985181.1| ribonuclease Z [Staphylococcus epidermidis BVS058A4]
gi|420163124|ref|ZP_14669871.1| ribonuclease Z [Staphylococcus epidermidis NIHLM095]
gi|420167900|ref|ZP_14674552.1| ribonuclease Z [Staphylococcus epidermidis NIHLM087]
gi|420184477|ref|ZP_14690586.1| ribonuclease Z [Staphylococcus epidermidis NIHLM040]
gi|394234813|gb|EJD80387.1| ribonuclease Z [Staphylococcus epidermidis NIHLM095]
gi|394237928|gb|EJD83414.1| ribonuclease Z [Staphylococcus epidermidis NIHLM087]
gi|394257128|gb|EJE02050.1| ribonuclease Z [Staphylococcus epidermidis NIHLM040]
gi|410891498|gb|EKS39295.1| ribonuclease Z [Staphylococcus epidermidis BVS058A4]
Length = 306
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVI 211
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYPITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRI 150
>gi|268591447|ref|ZP_06125668.1| ribonuclease Z [Providencia rettgeri DSM 1131]
gi|291313101|gb|EFE53554.1| ribonuclease Z [Providencia rettgeri DSM 1131]
Length = 304
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 34/201 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKP-PTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + T++ P +K +E + + S+ + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGATDLLTVYGPKGLKHYIETVLAV--SVSYMTYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+V ++ G+ ++ +++V + H + GY I L KL I +G +
Sbjct: 117 IVEIEAGQLFD-DGELIVTAYALDHRVECYGYRIEGHPKSGALDAVKLANDNIP-RGPWM 174
Query: 231 EKLKKSGVEITDI-------------ILSPEVAFTGDT--TSEFMLNPRNADALRAKILI 275
+ LK + D I VA GDT T + + RNAD ++I
Sbjct: 175 QALKAGETIVLDDGRVVNGADYLGEPIPGKVVAIFGDTQPTEQALELARNAD-----VMI 229
Query: 276 TEATFLDDEMSIEHAQQHGHT 296
E T L+ E + + A + GH+
Sbjct: 230 HETT-LEAEFA-QKANERGHS 248
>gi|448568237|ref|ZP_21637814.1| metal dependent hydrolase [Haloferax lucentense DSM 14919]
gi|448600822|ref|ZP_21656201.1| metal dependent hydrolase [Haloferax alexandrinus JCM 10717]
gi|445727187|gb|ELZ78801.1| metal dependent hydrolase [Haloferax lucentense DSM 14919]
gi|445734835|gb|ELZ86391.1| metal dependent hydrolase [Haloferax alexandrinus JCM 10717]
Length = 248
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
V +TH HLDH+ L V +R L I P +E VE LF++H L LD+
Sbjct: 56 VLLTHHHLDHVSDLMALVKARWLAGADSLEIVGPAGTEELVEGLFDVHDYLRG---RLDI 112
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
+VG T V F+ H +P+ Y
Sbjct: 113 QIREVGPTEFGIAGFDVMGFEVRHSMPTLAY 143
>gi|433432519|ref|ZP_20407769.1| metal dependent hydrolase [Haloferax sp. BAB2207]
gi|432193523|gb|ELK50243.1| metal dependent hydrolase [Haloferax sp. BAB2207]
Length = 248
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
V +TH HLDH+ L V +R L I P +E VE LF++H L LD+
Sbjct: 56 VLLTHHHLDHVSDLMALVKARWLAGADSLEIVGPAGTEELVEGLFDVHDYLRG---RLDI 112
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
+VG T V F+ H +P+ Y
Sbjct: 113 QIREVGPTEFGIAGFDVMGFEVRHSMPTLAY 143
>gi|432862866|ref|ZP_20087155.1| ribonuclease Z [Escherichia coli KTE146]
gi|431404905|gb|ELG88151.1| ribonuclease Z [Escherichia coli KTE146]
Length = 305
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWADYP--LE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|27468105|ref|NP_764742.1| hypothetical protein SE1187 [Staphylococcus epidermidis ATCC 12228]
gi|251810920|ref|ZP_04825393.1| ribonuclease Z [Staphylococcus epidermidis BCM-HMP0060]
gi|282876071|ref|ZP_06284938.1| ribonuclease Z [Staphylococcus epidermidis SK135]
gi|417656057|ref|ZP_12305748.1| ribonuclease Z [Staphylococcus epidermidis VCU028]
gi|417913663|ref|ZP_12557326.1| ribonuclease Z [Staphylococcus epidermidis VCU109]
gi|418606691|ref|ZP_13169961.1| ribonuclease Z [Staphylococcus epidermidis VCU057]
gi|418609699|ref|ZP_13172835.1| ribonuclease Z [Staphylococcus epidermidis VCU065]
gi|418664573|ref|ZP_13226041.1| ribonuclease Z [Staphylococcus epidermidis VCU081]
gi|421607003|ref|ZP_16048253.1| ribonuclease Z [Staphylococcus epidermidis AU12-03]
gi|41017554|sp|Q8CSG7.1|RNZ_STAES RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|27315651|gb|AAO04786.1|AE016748_20 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|251805600|gb|EES58257.1| ribonuclease Z [Staphylococcus epidermidis BCM-HMP0060]
gi|281295096|gb|EFA87623.1| ribonuclease Z [Staphylococcus epidermidis SK135]
gi|329737307|gb|EGG73561.1| ribonuclease Z [Staphylococcus epidermidis VCU028]
gi|341654685|gb|EGS78423.1| ribonuclease Z [Staphylococcus epidermidis VCU109]
gi|374406638|gb|EHQ77530.1| ribonuclease Z [Staphylococcus epidermidis VCU065]
gi|374407467|gb|EHQ78329.1| ribonuclease Z [Staphylococcus epidermidis VCU057]
gi|374410383|gb|EHQ81141.1| ribonuclease Z [Staphylococcus epidermidis VCU081]
gi|406657296|gb|EKC83685.1| ribonuclease Z [Staphylococcus epidermidis AU12-03]
Length = 306
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVI 211
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYPITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRI 150
>gi|425073511|ref|ZP_18476617.1| ribonuclease Z [Proteus mirabilis WGLW4]
gi|404595196|gb|EKA95747.1| ribonuclease Z [Proteus mirabilis WGLW4]
Length = 305
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 96/227 (42%), Gaps = 36/227 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI GLP + SR + + P TI+ P IK +E + +S +
Sbjct: 57 NKIFITHLHGDHIFGLPGLLCSRSMGGTENPLTIYGPTGIKAFIETALTLSQSY--LTYP 114
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE---- 231
LD++ ++ I V H +P GY + K K L+ + I
Sbjct: 115 LDIIEIEQDGFLFEEEGIRVSCGALSHPVPCFGYRLEEDNKPGKLNADKLEAENIPRGPW 174
Query: 232 -KLKKSGVEIT----DII-----LSPE-----VAFTGDT--TSEFMLNPRNADALRAKIL 274
KL K G +T II LS E + GDT T + NAD ++
Sbjct: 175 YKLLKQGKTVTLPDGRIIDGKDYLSTEIKGRCIVIFGDTQPTPNAVKLAENAD-----VI 229
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
+ EATF D + A GH S I+ A +L K +AK + +T
Sbjct: 230 VHEATFKHD--MADKANSRGH---SSTIQAA--ELAKKANAKRLIIT 269
>gi|312110329|ref|YP_003988645.1| ribonuclease Z [Geobacillus sp. Y4.1MC1]
gi|311215430|gb|ADP74034.1| ribonuclease Z [Geobacillus sp. Y4.1MC1]
Length = 309
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 28/205 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P T++ P I+ +E + + ++ +L
Sbjct: 60 IFITHLHGDHIFGLPGLLGSRSFQGGETPLTVYGPKGIQAFIETSLSVSST--RLKYDLQ 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK---------Q 221
+V ++ G +E +V + H I S G+ + LL KL+ Q
Sbjct: 118 IVEIEEGIIFEDERFLVTAK-QLDHGILSYGFRVVEKDLPGTLLVDKLQALGIRPGPIYQ 176
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITE 277
I L GK ++ + ++ + P+ VA GDT A A +L+ E
Sbjct: 177 QIKL-GKMVQLEDGTVIDGRHFVGPPQKGRIVAILGDTR---YCEASVELAAEADVLVHE 232
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEDI 302
ATF ++ ++ H H T + ++
Sbjct: 233 ATFAREDSALAHDYFHSTTAQAAEV 257
>gi|427809963|ref|ZP_18977028.1| hypothetical protein BN17_15751 [Escherichia coli]
gi|412970142|emb|CCJ44785.1| hypothetical protein BN17_15751 [Escherichia coli]
Length = 311
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|414881433|tpg|DAA58564.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 400
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 21/156 (13%)
Query: 98 PELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN---LKPPTIFVPPS 154
P+ A P + V ITH H+DHIG LP + G + + PT + P
Sbjct: 45 PDFARALAAWGAPDFTTAISCVVITHFHMDHIGALPYFTEVCGYHGPIYMTYPTKALAPF 104
Query: 155 IKEDVEKLF------EIHRSLGNVELNLDLVA-LDVGETYEMRNDIVVRPFKTHHVIPSQ 207
+ ED K+ E S ++ + V +D+ +T ++ D+V+R + HVI +
Sbjct: 105 MLEDYRKVTMGQRGEEKQYSYEDILRCMKKVTPMDLKQTVQVDKDLVIRAYYAGHVIGAA 164
Query: 208 GYVIYLLRKKLKKQYI---------HLKGKQIEKLK 234
+IY Y HL QI++LK
Sbjct: 165 --MIYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRLK 198
>gi|418041824|ref|ZP_12680038.1| ribonuclease Z [Escherichia coli W26]
gi|383475227|gb|EID67192.1| ribonuclease Z [Escherichia coli W26]
Length = 270
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 25 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 82
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 83 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 115
>gi|422834569|ref|ZP_16882630.1| ribonuclease Z [Escherichia coli E101]
gi|371601361|gb|EHN90111.1| ribonuclease Z [Escherichia coli E101]
Length = 305
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|110806235|ref|YP_689755.1| ribonuclease Z [Shigella flexneri 5 str. 8401]
gi|191166492|ref|ZP_03028322.1| ribonuclease Z [Escherichia coli B7A]
gi|193062399|ref|ZP_03043494.1| ribonuclease Z [Escherichia coli E22]
gi|193068211|ref|ZP_03049175.1| ribonuclease Z [Escherichia coli E110019]
gi|194427129|ref|ZP_03059680.1| ribonuclease Z [Escherichia coli B171]
gi|194436086|ref|ZP_03068188.1| ribonuclease Z [Escherichia coli 101-1]
gi|301026902|ref|ZP_07190300.1| ribonuclease Z [Escherichia coli MS 196-1]
gi|331642906|ref|ZP_08344041.1| ribonuclease Z [Escherichia coli H736]
gi|331678218|ref|ZP_08378893.1| ribonuclease Z [Escherichia coli H591]
gi|344915295|ref|NP_708154.3| hypothetical protein SF2347 [Shigella flexneri 2a str. 301]
gi|386594950|ref|YP_006091350.1| ribonuclease BN [Escherichia coli DH1]
gi|416268750|ref|ZP_11642249.1| Ribonuclease Z [Shigella dysenteriae CDC 74-1112]
gi|416291873|ref|ZP_11650031.1| Ribonuclease Z [Shigella flexneri CDC 796-83]
gi|417122338|ref|ZP_11971596.1| ribonuclease BN [Escherichia coli 97.0246]
gi|417173640|ref|ZP_12003436.1| ribonuclease BN [Escherichia coli 3.2608]
gi|417182518|ref|ZP_12009075.1| ribonuclease BN [Escherichia coli 93.0624]
gi|417192032|ref|ZP_12014132.1| ribonuclease BN [Escherichia coli 4.0522]
gi|417208615|ref|ZP_12020346.1| ribonuclease BN [Escherichia coli JB1-95]
gi|417222548|ref|ZP_12025988.1| ribonuclease BN [Escherichia coli 96.154]
gi|417253822|ref|ZP_12045578.1| ribonuclease BN [Escherichia coli 4.0967]
gi|417259886|ref|ZP_12047409.1| ribonuclease BN [Escherichia coli 2.3916]
gi|417268852|ref|ZP_12056212.1| ribonuclease BN [Escherichia coli 3.3884]
gi|417272701|ref|ZP_12060050.1| ribonuclease BN [Escherichia coli 2.4168]
gi|417277558|ref|ZP_12064881.1| ribonuclease BN [Escherichia coli 3.2303]
gi|417291877|ref|ZP_12079158.1| ribonuclease BN [Escherichia coli B41]
gi|418957358|ref|ZP_13509282.1| ribonuclease Z [Escherichia coli J53]
gi|419950568|ref|ZP_14466780.1| ribonuclease Z [Escherichia coli CUMT8]
gi|422762224|ref|ZP_16815981.1| ribonuclease BN [Escherichia coli E1167]
gi|422766881|ref|ZP_16820608.1| ribonuclease BN [Escherichia coli E1520]
gi|422786888|ref|ZP_16839627.1| ribonuclease BN [Escherichia coli H489]
gi|424838636|ref|ZP_18263273.1| ribonuclease Z [Shigella flexneri 5a str. M90T]
gi|427805405|ref|ZP_18972472.1| hypothetical protein BN16_28251 [Escherichia coli chi7122]
gi|432377432|ref|ZP_19620423.1| ribonuclease Z [Escherichia coli KTE12]
gi|432534543|ref|ZP_19771518.1| ribonuclease Z [Escherichia coli KTE234]
gi|432661507|ref|ZP_19897151.1| ribonuclease Z [Escherichia coli KTE111]
gi|432705068|ref|ZP_19940168.1| ribonuclease Z [Escherichia coli KTE171]
gi|432809919|ref|ZP_20043812.1| ribonuclease Z [Escherichia coli KTE101]
gi|432968368|ref|ZP_20157283.1| ribonuclease Z [Escherichia coli KTE203]
gi|433135500|ref|ZP_20320844.1| ribonuclease Z [Escherichia coli KTE166]
gi|442592126|ref|ZP_21010106.1| Ribonuclease Z [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|442598072|ref|ZP_21015846.1| Ribonuclease Z [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|24052705|gb|AAN43861.1| conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30041954|gb|AAP17680.1| hypothetical protein S2481 [Shigella flexneri 2a str. 2457T]
gi|81246161|gb|ABB66869.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|110615783|gb|ABF04450.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|190903452|gb|EDV63171.1| ribonuclease Z [Escherichia coli B7A]
gi|192932065|gb|EDV84664.1| ribonuclease Z [Escherichia coli E22]
gi|192958490|gb|EDV88929.1| ribonuclease Z [Escherichia coli E110019]
gi|194414750|gb|EDX31021.1| ribonuclease Z [Escherichia coli B171]
gi|194424814|gb|EDX40799.1| ribonuclease Z [Escherichia coli 101-1]
gi|260448639|gb|ACX39061.1| ribonuclease BN [Escherichia coli DH1]
gi|299879521|gb|EFI87732.1| ribonuclease Z [Escherichia coli MS 196-1]
gi|320174970|gb|EFW50085.1| Ribonuclease Z [Shigella dysenteriae CDC 74-1112]
gi|320187392|gb|EFW62084.1| Ribonuclease Z [Shigella flexneri CDC 796-83]
gi|323936667|gb|EGB32953.1| ribonuclease BN [Escherichia coli E1520]
gi|323961510|gb|EGB57119.1| ribonuclease BN [Escherichia coli H489]
gi|324117850|gb|EGC11749.1| ribonuclease BN [Escherichia coli E1167]
gi|331039704|gb|EGI11924.1| ribonuclease Z [Escherichia coli H736]
gi|331074678|gb|EGI45998.1| ribonuclease Z [Escherichia coli H591]
gi|383467688|gb|EID62709.1| ribonuclease Z [Shigella flexneri 5a str. M90T]
gi|384380005|gb|EIE37872.1| ribonuclease Z [Escherichia coli J53]
gi|386147618|gb|EIG94058.1| ribonuclease BN [Escherichia coli 97.0246]
gi|386176332|gb|EIH53811.1| ribonuclease BN [Escherichia coli 3.2608]
gi|386184371|gb|EIH67110.1| ribonuclease BN [Escherichia coli 93.0624]
gi|386190914|gb|EIH79660.1| ribonuclease BN [Escherichia coli 4.0522]
gi|386196576|gb|EIH90796.1| ribonuclease BN [Escherichia coli JB1-95]
gi|386202350|gb|EII01341.1| ribonuclease BN [Escherichia coli 96.154]
gi|386215749|gb|EII32241.1| ribonuclease BN [Escherichia coli 4.0967]
gi|386226609|gb|EII48911.1| ribonuclease BN [Escherichia coli 2.3916]
gi|386227657|gb|EII55013.1| ribonuclease BN [Escherichia coli 3.3884]
gi|386236401|gb|EII68377.1| ribonuclease BN [Escherichia coli 2.4168]
gi|386239626|gb|EII76553.1| ribonuclease BN [Escherichia coli 3.2303]
gi|386254199|gb|EIJ03889.1| ribonuclease BN [Escherichia coli B41]
gi|388416669|gb|EIL76550.1| ribonuclease Z [Escherichia coli CUMT8]
gi|412963587|emb|CCK47512.1| hypothetical protein BN16_28251 [Escherichia coli chi7122]
gi|430898731|gb|ELC20864.1| ribonuclease Z [Escherichia coli KTE12]
gi|431060179|gb|ELD69513.1| ribonuclease Z [Escherichia coli KTE234]
gi|431199244|gb|ELE97997.1| ribonuclease Z [Escherichia coli KTE111]
gi|431242554|gb|ELF36969.1| ribonuclease Z [Escherichia coli KTE171]
gi|431362687|gb|ELG49265.1| ribonuclease Z [Escherichia coli KTE101]
gi|431471485|gb|ELH51378.1| ribonuclease Z [Escherichia coli KTE203]
gi|431656178|gb|ELJ23199.1| ribonuclease Z [Escherichia coli KTE166]
gi|441608279|emb|CCP99132.1| Ribonuclease Z [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|441653346|emb|CCQ01549.1| Ribonuclease Z [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
Length = 311
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|251796637|ref|YP_003011368.1| ribonuclease Z [Paenibacillus sp. JDR-2]
gi|247544263|gb|ACT01282.1| ribonuclease Z [Paenibacillus sp. JDR-2]
Length = 309
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 47/235 (20%)
Query: 97 IPELKCA---FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLK 145
+P+ C+ FD G R P + + +F+TH H DH G+P +++R
Sbjct: 26 LPDPDCSLWMFDAGEGTQHQLMRTPLKLNKLEALFVTHLHGDHTYGIPGLLSTRSYVGGN 85
Query: 146 PP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHV 203
P +F PP I+E +E +L + L+ ++ +V E + + V H
Sbjct: 86 TPLQLFGPPGIREMIETAL----TLSSSRLDYEITYHEVSEGVVYKTERYTVEALPLEHR 141
Query: 204 IPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLKKSGVEIT----DIILSPEVA--- 250
+P GY I K L+ G ++KK G ++T +IL+ +VA
Sbjct: 142 VPCFGYRITECESPGKLNVERLQQLGVPAGPLFGRIKK-GEDVTLPDGTLILAADVAGKP 200
Query: 251 -------FTGDT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHT 296
GDT + +NAD +L+ EATF + E A +GH+
Sbjct: 201 QCGRIITIAGDTKPCDNALRLAQNAD-----LLVHEATFAAGQE--EKAHLYGHS 248
>gi|432370511|ref|ZP_19613597.1| ribonuclease Z [Escherichia coli KTE10]
gi|430884723|gb|ELC07658.1| ribonuclease Z [Escherichia coli KTE10]
Length = 305
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|417613744|ref|ZP_12264202.1| ribonuclease Z [Escherichia coli STEC_EH250]
gi|345361938|gb|EGW94095.1| ribonuclease Z [Escherichia coli STEC_EH250]
Length = 305
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|300818132|ref|ZP_07098344.1| ribonuclease Z [Escherichia coli MS 107-1]
gi|415876919|ref|ZP_11543242.1| ribonuclease Z [Escherichia coli MS 79-10]
gi|300529276|gb|EFK50338.1| ribonuclease Z [Escherichia coli MS 107-1]
gi|342928273|gb|EGU96995.1| ribonuclease Z [Escherichia coli MS 79-10]
Length = 305
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|33240879|ref|NP_875821.1| metallo-beta-lactamase superfamily protein [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|41017540|sp|Q7VAN0.1|RNZ_PROMA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|33238408|gb|AAQ00474.1| Metallo-beta-lactamase superfamily enzyme [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 320
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 31/228 (13%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD G R R Q +FITH H DHI GLP +AS GL N ++ P +
Sbjct: 35 FDCGEGTQHQFLRSDLRTSQLKKIFITHMHGDHIYGLPGLMASLGLAGNSLGLDLYGPSA 94
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVI 211
+K ++ + + S + + + + L+ E +E ND +V H +P+ Y +
Sbjct: 95 LKGFLDGILKSSSSRISYPMKIHGLELESAENKIIFE-DNDFLVTCTPLIHRVPAFAYRV 153
Query: 212 --------------YLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPE---VAFTGD 254
LR Y L+ QI KLK + + P+ +F
Sbjct: 154 DEKAKPGRFDVEKAKALRIPPGPIYSQLQKGQIVKLKDGRIFNGNDFCGPQRKGASFVYC 213
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
T + F A A +LI EATF ++ + + +QH + ++ I
Sbjct: 214 TDTMFAQTALKL-ANGADLLIHEATFSHEDSDLAYQRQHSTSTMAAQI 260
>gi|339495064|ref|YP_004715357.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
gi|338802436|gb|AEJ06268.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
Length = 335
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ ITH H DH GLP +AS G+ K P TI P I+ V + +S + EL+
Sbjct: 58 ICITHVHGDHCYGLPGLLASAGMMGRKAPLTIIAPQGIETWVRATLSMSQSWLSYELDFH 117
Query: 178 LV-ALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
V LD + MR + + H +P GY
Sbjct: 118 AVETLDEWRSPNMR----IEATELSHRVPCYGY 146
>gi|417713323|ref|ZP_12362289.1| ribonuclease Z [Shigella flexneri K-272]
gi|333002638|gb|EGK22198.1| ribonuclease Z [Shigella flexneri K-272]
Length = 305
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|422771883|ref|ZP_16825572.1| ribonuclease BN [Escherichia coli E482]
gi|323941035|gb|EGB37222.1| ribonuclease BN [Escherichia coli E482]
Length = 305
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|90109091|pdb|2CBN|A Chain A, Crystal Structure Of Zipd From Escherichia Coli
Length = 306
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 61 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 118
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 119 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 151
>gi|75759266|ref|ZP_00739366.1| Ribonuclease Z [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|74493272|gb|EAO56388.1| Ribonuclease Z [Bacillus thuringiensis serovar israelensis ATCC
35646]
Length = 318
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 98/223 (43%), Gaps = 32/223 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 70 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 127
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V + T N+ V + H I GY I LL KL + + +K I
Sbjct: 128 VVEITEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDKLLE--MGVKPGPI 185
Query: 231 EKLKKSG--VEITDIILSPEVAFTGDTTSEFML----NPRNADALR-----AKILITEAT 279
K K G VE+ D + F G ++ + R +A R A +L+ EAT
Sbjct: 186 FKRLKDGEVVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHEAT 245
Query: 280 FLDDEMSIEHAQQHGHTHLSEDIRQAV-LKLQSKVSAKVVPLT 321
F ++ +Q H + +QA + LQ+ +AK + LT
Sbjct: 246 FAAED------EQQAHDYFHSTSKQAASIALQA--NAKRLILT 280
>gi|418944298|ref|ZP_13497379.1| ribonuclease Z, partial [Escherichia coli O157:H43 str. T22]
gi|375320401|gb|EHS66365.1| ribonuclease Z, partial [Escherichia coli O157:H43 str. T22]
Length = 304
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|90111412|ref|NP_416771.4| RNase BN, tRNA processing enzyme [Escherichia coli str. K-12
substr. MG1655]
gi|157161755|ref|YP_001459073.1| ribonuclease Z [Escherichia coli HS]
gi|161486461|ref|NP_837870.2| ribonuclease Z [Shigella flexneri 2a str. 2457T]
gi|161984902|ref|YP_408697.2| ribonuclease Z [Shigella boydii Sb227]
gi|170019417|ref|YP_001724371.1| ribonuclease Z [Escherichia coli ATCC 8739]
gi|188494414|ref|ZP_03001684.1| putative ribonuclease BN [Escherichia coli 53638]
gi|209919719|ref|YP_002293803.1| ribonuclease Z [Escherichia coli SE11]
gi|238901443|ref|YP_002927239.1| ribonuclease Z [Escherichia coli BW2952]
gi|251785630|ref|YP_002999934.1| RNase BN [Escherichia coli BL21(DE3)]
gi|253772807|ref|YP_003035638.1| ribonuclease Z [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254162280|ref|YP_003045388.1| ribonuclease Z [Escherichia coli B str. REL606]
gi|254289041|ref|YP_003054789.1| ribonuclease Z [Escherichia coli BL21(DE3)]
gi|260844861|ref|YP_003222639.1| binuclear zinc phosphodiesterase [Escherichia coli O103:H2 str.
12009]
gi|260856315|ref|YP_003230206.1| ribonuclease Z [Escherichia coli O26:H11 str. 11368]
gi|260868994|ref|YP_003235396.1| binuclear zinc phosphodiesterase [Escherichia coli O111:H- str.
11128]
gi|300822141|ref|ZP_07102283.1| ribonuclease Z [Escherichia coli MS 119-7]
gi|300903652|ref|ZP_07121570.1| ribonuclease Z [Escherichia coli MS 84-1]
gi|300918567|ref|ZP_07135156.1| ribonuclease Z [Escherichia coli MS 115-1]
gi|300948974|ref|ZP_07163033.1| ribonuclease Z [Escherichia coli MS 116-1]
gi|301303272|ref|ZP_07209397.1| ribonuclease Z [Escherichia coli MS 124-1]
gi|301647638|ref|ZP_07247432.1| ribonuclease Z [Escherichia coli MS 146-1]
gi|309793147|ref|ZP_07687575.1| ribonuclease Z [Escherichia coli MS 145-7]
gi|331668970|ref|ZP_08369818.1| ribonuclease Z [Escherichia coli TA271]
gi|386281337|ref|ZP_10058999.1| ribonuclease Z [Escherichia sp. 4_1_40B]
gi|386705529|ref|YP_006169376.1| ribonuclease Z [Escherichia coli P12b]
gi|387612843|ref|YP_006115959.1| ribonuclease Z (tRNA endonuclease) [Escherichia coli ETEC H10407]
gi|387621979|ref|YP_006129606.1| ribonuclease Z [Escherichia coli DH1]
gi|388478316|ref|YP_490508.1| binuclear zinc phosphodiesterase [Escherichia coli str. K-12
substr. W3110]
gi|404375621|ref|ZP_10980805.1| ribonuclease Z [Escherichia sp. 1_1_43]
gi|415778332|ref|ZP_11489378.1| ribonuclease Z [Escherichia coli 3431]
gi|415784118|ref|ZP_11492081.1| ribonuclease Z [Escherichia coli EPECa14]
gi|415822850|ref|ZP_11511369.1| ribonuclease Z [Escherichia coli OK1180]
gi|415828991|ref|ZP_11515423.1| ribonuclease Z [Escherichia coli OK1357]
gi|415853442|ref|ZP_11529418.1| ribonuclease Z [Shigella flexneri 2a str. 2457T]
gi|415863998|ref|ZP_11537149.1| ribonuclease Z [Escherichia coli MS 85-1]
gi|417592562|ref|ZP_12243259.1| ribonuclease Z [Escherichia coli 2534-86]
gi|417597583|ref|ZP_12248224.1| ribonuclease Z [Escherichia coli 3030-1]
gi|417602877|ref|ZP_12253447.1| ribonuclease Z [Escherichia coli STEC_94C]
gi|417635205|ref|ZP_12285418.1| ribonuclease Z [Escherichia coli STEC_S1191]
gi|417682949|ref|ZP_12332302.1| ribonuclease Z [Shigella boydii 3594-74]
gi|417703007|ref|ZP_12352118.1| ribonuclease Z [Shigella flexneri K-218]
gi|417723957|ref|ZP_12372761.1| ribonuclease Z [Shigella flexneri K-304]
gi|417739107|ref|ZP_12387687.1| ribonuclease Z [Shigella flexneri 4343-70]
gi|417945289|ref|ZP_12588524.1| ribonuclease Z [Escherichia coli XH140A]
gi|417975419|ref|ZP_12616218.1| ribonuclease Z [Escherichia coli XH001]
gi|418257257|ref|ZP_12880925.1| ribonuclease Z [Shigella flexneri 6603-63]
gi|418303664|ref|ZP_12915458.1| ribonuclease Z [Escherichia coli UMNF18]
gi|419143211|ref|ZP_13687949.1| ribonuclease Z [Escherichia coli DEC6A]
gi|419149298|ref|ZP_13693951.1| ribonuclease Z [Escherichia coli DEC6B]
gi|419159953|ref|ZP_13704458.1| ribonuclease Z [Escherichia coli DEC6D]
gi|419165077|ref|ZP_13709534.1| ribonuclease Z [Escherichia coli DEC6E]
gi|419170947|ref|ZP_13714833.1| ribonuclease Z [Escherichia coli DEC7A]
gi|419181587|ref|ZP_13725200.1| ribonuclease Z [Escherichia coli DEC7C]
gi|419187027|ref|ZP_13730541.1| ribonuclease Z [Escherichia coli DEC7D]
gi|419192320|ref|ZP_13735773.1| ribonuclease Z [Escherichia coli DEC7E]
gi|419204243|ref|ZP_13747425.1| ribonuclease Z [Escherichia coli DEC8B]
gi|419210479|ref|ZP_13753556.1| ribonuclease Z [Escherichia coli DEC8C]
gi|419216350|ref|ZP_13759350.1| ribonuclease Z [Escherichia coli DEC8D]
gi|419227522|ref|ZP_13770378.1| ribonuclease Z [Escherichia coli DEC9A]
gi|419233242|ref|ZP_13776018.1| ribonuclease Z [Escherichia coli DEC9B]
gi|419244041|ref|ZP_13786679.1| ribonuclease Z [Escherichia coli DEC9D]
gi|419249865|ref|ZP_13792448.1| ribonuclease Z [Escherichia coli DEC9E]
gi|419267992|ref|ZP_13810344.1| ribonuclease Z [Escherichia coli DEC10C]
gi|419278774|ref|ZP_13821021.1| ribonuclease Z [Escherichia coli DEC10E]
gi|419284956|ref|ZP_13827129.1| ribonuclease Z [Escherichia coli DEC10F]
gi|419290209|ref|ZP_13832301.1| ribonuclease Z [Escherichia coli DEC11A]
gi|419295536|ref|ZP_13837582.1| ribonuclease Z [Escherichia coli DEC11B]
gi|419307130|ref|ZP_13849029.1| ribonuclease Z [Escherichia coli DEC11D]
gi|419317546|ref|ZP_13859349.1| ribonuclease Z [Escherichia coli DEC12A]
gi|419329687|ref|ZP_13871291.1| ribonuclease Z [Escherichia coli DEC12C]
gi|419335250|ref|ZP_13876783.1| ribonuclease Z [Escherichia coli DEC12D]
gi|419340716|ref|ZP_13882180.1| ribonuclease Z [Escherichia coli DEC12E]
gi|419345938|ref|ZP_13887312.1| ribonuclease Z [Escherichia coli DEC13A]
gi|419350351|ref|ZP_13891689.1| ribonuclease Z [Escherichia coli DEC13B]
gi|419355819|ref|ZP_13897076.1| ribonuclease Z [Escherichia coli DEC13C]
gi|419360914|ref|ZP_13902131.1| ribonuclease Z [Escherichia coli DEC13D]
gi|419366040|ref|ZP_13907201.1| ribonuclease Z [Escherichia coli DEC13E]
gi|419370769|ref|ZP_13911888.1| ribonuclease Z [Escherichia coli DEC14A]
gi|419376205|ref|ZP_13917229.1| ribonuclease Z [Escherichia coli DEC14B]
gi|419381539|ref|ZP_13922490.1| ribonuclease Z [Escherichia coli DEC14C]
gi|419386844|ref|ZP_13927722.1| ribonuclease Z [Escherichia coli DEC14D]
gi|419392359|ref|ZP_13933171.1| ribonuclease Z [Escherichia coli DEC15A]
gi|419402739|ref|ZP_13943463.1| ribonuclease Z [Escherichia coli DEC15C]
gi|419407858|ref|ZP_13948547.1| ribonuclease Z [Escherichia coli DEC15D]
gi|419413444|ref|ZP_13954096.1| ribonuclease Z [Escherichia coli DEC15E]
gi|419810000|ref|ZP_14334883.1| ribonuclease Z [Escherichia coli O32:H37 str. P4]
gi|419863601|ref|ZP_14386118.1| ribonuclease Z [Escherichia coli O103:H25 str. CVM9340]
gi|419870632|ref|ZP_14392725.1| ribonuclease Z [Escherichia coli O103:H2 str. CVM9450]
gi|419876131|ref|ZP_14397901.1| ribonuclease Z [Escherichia coli O111:H11 str. CVM9534]
gi|419880859|ref|ZP_14402224.1| ribonuclease Z [Escherichia coli O111:H11 str. CVM9545]
gi|419894851|ref|ZP_14414735.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9574]
gi|419901318|ref|ZP_14420677.1| ribonuclease Z [Escherichia coli O26:H11 str. CVM9942]
gi|419908988|ref|ZP_14427623.1| hypothetical protein ECO10026_09317 [Escherichia coli O26:H11 str.
CVM10026]
gi|420091011|ref|ZP_14602769.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9602]
gi|420093639|ref|ZP_14605285.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9634]
gi|420102161|ref|ZP_14613186.1| ribonuclease Z [Escherichia coli O111:H11 str. CVM9455]
gi|420108430|ref|ZP_14618685.1| ribonuclease Z [Escherichia coli O111:H11 str. CVM9553]
gi|420116749|ref|ZP_14626126.1| ribonuclease Z [Escherichia coli O26:H11 str. CVM10021]
gi|420120153|ref|ZP_14629374.1| ribonuclease Z [Escherichia coli O26:H11 str. CVM10030]
gi|420125061|ref|ZP_14633896.1| ribonuclease BN [Escherichia coli O26:H11 str. CVM10224]
gi|420133674|ref|ZP_14641877.1| ribonuclease Z [Escherichia coli O26:H11 str. CVM9952]
gi|420326423|ref|ZP_14828174.1| ribonuclease Z [Shigella flexneri CCH060]
gi|420353648|ref|ZP_14854758.1| ribonuclease Z [Shigella boydii 4444-74]
gi|420381117|ref|ZP_14880570.1| ribonuclease Z [Shigella dysenteriae 225-75]
gi|420391997|ref|ZP_14891250.1| ribonuclease Z [Escherichia coli EPEC C342-62]
gi|422351027|ref|ZP_16431873.1| ribonuclease Z [Escherichia coli MS 117-3]
gi|422819554|ref|ZP_16867765.1| ribonuclease Z [Escherichia coli M919]
gi|423704347|ref|ZP_17678772.1| ribonuclease Z [Escherichia coli H730]
gi|424753070|ref|ZP_18181035.1| ribonuclease BN [Escherichia coli O26:H11 str. CFSAN001629]
gi|424761950|ref|ZP_18189479.1| ribonuclease BN [Escherichia coli O111:H11 str. CFSAN001630]
gi|424774396|ref|ZP_18201411.1| ribonuclease BN [Escherichia coli O111:H8 str. CFSAN001632]
gi|425115685|ref|ZP_18517486.1| ribonuclease Z [Escherichia coli 8.0566]
gi|425120409|ref|ZP_18522108.1| ribonuclease Z [Escherichia coli 8.0569]
gi|425273436|ref|ZP_18664848.1| ribonuclease Z [Escherichia coli TW15901]
gi|425283980|ref|ZP_18675019.1| ribonuclease Z [Escherichia coli TW00353]
gi|425289284|ref|ZP_18680132.1| ribonuclease Z [Escherichia coli 3006]
gi|425380328|ref|ZP_18764366.1| ribonuclease Z [Escherichia coli EC1865]
gi|432417743|ref|ZP_19660347.1| ribonuclease Z [Escherichia coli KTE44]
gi|432481637|ref|ZP_19723594.1| ribonuclease Z [Escherichia coli KTE210]
gi|432527050|ref|ZP_19764143.1| ribonuclease Z [Escherichia coli KTE233]
gi|432564527|ref|ZP_19801108.1| ribonuclease Z [Escherichia coli KTE51]
gi|432576550|ref|ZP_19813010.1| ribonuclease Z [Escherichia coli KTE56]
gi|432637517|ref|ZP_19873387.1| ribonuclease Z [Escherichia coli KTE81]
gi|432675377|ref|ZP_19910836.1| ribonuclease Z [Escherichia coli KTE142]
gi|432686103|ref|ZP_19921400.1| ribonuclease Z [Escherichia coli KTE156]
gi|432692243|ref|ZP_19927471.1| ribonuclease Z [Escherichia coli KTE161]
gi|432737786|ref|ZP_19972544.1| ribonuclease Z [Escherichia coli KTE42]
gi|432750744|ref|ZP_19985348.1| ribonuclease Z [Escherichia coli KTE29]
gi|432806419|ref|ZP_20040347.1| ribonuclease Z [Escherichia coli KTE91]
gi|432832289|ref|ZP_20065863.1| ribonuclease Z [Escherichia coli KTE135]
gi|432835249|ref|ZP_20068788.1| ribonuclease Z [Escherichia coli KTE136]
gi|432875908|ref|ZP_20094068.1| ribonuclease Z [Escherichia coli KTE154]
gi|432935053|ref|ZP_20134490.1| ribonuclease Z [Escherichia coli KTE184]
gi|432955789|ref|ZP_20147667.1| ribonuclease Z [Escherichia coli KTE197]
gi|433048649|ref|ZP_20236002.1| ribonuclease Z [Escherichia coli KTE120]
gi|433130838|ref|ZP_20316273.1| ribonuclease Z [Escherichia coli KTE163]
gi|433194340|ref|ZP_20378330.1| ribonuclease Z [Escherichia coli KTE90]
gi|443618346|ref|YP_007382202.1| ribonuclease BN [Escherichia coli APEC O78]
gi|450246027|ref|ZP_21900768.1| ribonuclease BN [Escherichia coli S17]
gi|67472296|sp|P0A8V0.1|RBN_ECOLI RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|67472297|sp|P0A8V1.1|RBN_SHIFL RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|166991100|sp|A8A2D6.1|RBN_ECOHS RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|189043784|sp|B1IXR8.1|RBN_ECOLC RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|254808636|sp|B6I7L2.1|RBN_ECOSE RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|259494131|sp|C4ZUB1.1|RBN_ECOBW RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|85675333|dbj|BAA16095.2| binuclear zinc phosphodiesterase [Escherichia coli str. K12 substr.
W3110]
gi|87082078|gb|AAC75328.2| RNase BN, tRNA processing enzyme [Escherichia coli str. K-12
substr. MG1655]
gi|157067435|gb|ABV06690.1| ribonuclease Z [Escherichia coli HS]
gi|169754345|gb|ACA77044.1| ribonuclease BN [Escherichia coli ATCC 8739]
gi|188489613|gb|EDU64716.1| putative ribonuclease BN [Escherichia coli 53638]
gi|209912978|dbj|BAG78052.1| conserved hypothetical protein [Escherichia coli SE11]
gi|238860087|gb|ACR62085.1| binuclear zinc phosphodiesterase [Escherichia coli BW2952]
gi|242377903|emb|CAQ32671.1| RNase BN [Escherichia coli BL21(DE3)]
gi|253323851|gb|ACT28453.1| ribonuclease BN [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253974181|gb|ACT39852.1| ribonuclease Z [Escherichia coli B str. REL606]
gi|253978348|gb|ACT44018.1| ribonuclease Z [Escherichia coli BL21(DE3)]
gi|257754964|dbj|BAI26466.1| binuclear zinc phosphodiesterase [Escherichia coli O26:H11 str.
11368]
gi|257760008|dbj|BAI31505.1| binuclear zinc phosphodiesterase [Escherichia coli O103:H2 str.
12009]
gi|257765350|dbj|BAI36845.1| binuclear zinc phosphodiesterase [Escherichia coli O111:H- str.
11128]
gi|300404388|gb|EFJ87926.1| ribonuclease Z [Escherichia coli MS 84-1]
gi|300414272|gb|EFJ97582.1| ribonuclease Z [Escherichia coli MS 115-1]
gi|300451557|gb|EFK15177.1| ribonuclease Z [Escherichia coli MS 116-1]
gi|300525271|gb|EFK46340.1| ribonuclease Z [Escherichia coli MS 119-7]
gi|300841446|gb|EFK69206.1| ribonuclease Z [Escherichia coli MS 124-1]
gi|301074168|gb|EFK88974.1| ribonuclease Z [Escherichia coli MS 146-1]
gi|308123433|gb|EFO60695.1| ribonuclease Z [Escherichia coli MS 145-7]
gi|309702579|emb|CBJ01907.1| ribonuclease Z (tRNA endonuclease) [Escherichia coli ETEC H10407]
gi|313651093|gb|EFS15492.1| ribonuclease Z [Shigella flexneri 2a str. 2457T]
gi|315136902|dbj|BAJ44061.1| ribonuclease Z [Escherichia coli DH1]
gi|315255203|gb|EFU35171.1| ribonuclease Z [Escherichia coli MS 85-1]
gi|315615535|gb|EFU96167.1| ribonuclease Z [Escherichia coli 3431]
gi|323156419|gb|EFZ42574.1| ribonuclease Z [Escherichia coli EPECa14]
gi|323176805|gb|EFZ62395.1| ribonuclease Z [Escherichia coli OK1180]
gi|323184412|gb|EFZ69788.1| ribonuclease Z [Escherichia coli OK1357]
gi|324020939|gb|EGB90158.1| ribonuclease Z [Escherichia coli MS 117-3]
gi|331064164|gb|EGI36075.1| ribonuclease Z [Escherichia coli TA271]
gi|332093633|gb|EGI98691.1| ribonuclease Z [Shigella boydii 3594-74]
gi|332754918|gb|EGJ85283.1| ribonuclease Z [Shigella flexneri 4343-70]
gi|333001867|gb|EGK21433.1| ribonuclease Z [Shigella flexneri K-218]
gi|333016252|gb|EGK35583.1| ribonuclease Z [Shigella flexneri K-304]
gi|339415762|gb|AEJ57434.1| ribonuclease Z [Escherichia coli UMNF18]
gi|342363069|gb|EGU27181.1| ribonuclease Z [Escherichia coli XH140A]
gi|344194984|gb|EGV49055.1| ribonuclease Z [Escherichia coli XH001]
gi|345338899|gb|EGW71326.1| ribonuclease Z [Escherichia coli 2534-86]
gi|345350543|gb|EGW82818.1| ribonuclease Z [Escherichia coli STEC_94C]
gi|345353571|gb|EGW85803.1| ribonuclease Z [Escherichia coli 3030-1]
gi|345387488|gb|EGX17310.1| ribonuclease Z [Escherichia coli STEC_S1191]
gi|359332612|dbj|BAL39059.1| binuclear zinc phosphodiesterase [Escherichia coli str. K-12
substr. MDS42]
gi|377992420|gb|EHV55567.1| ribonuclease Z [Escherichia coli DEC6B]
gi|377993724|gb|EHV56855.1| ribonuclease Z [Escherichia coli DEC6A]
gi|378007297|gb|EHV70266.1| ribonuclease Z [Escherichia coli DEC6D]
gi|378011159|gb|EHV74104.1| ribonuclease Z [Escherichia coli DEC6E]
gi|378014991|gb|EHV77888.1| ribonuclease Z [Escherichia coli DEC7A]
gi|378023220|gb|EHV85897.1| ribonuclease Z [Escherichia coli DEC7C]
gi|378029019|gb|EHV91635.1| ribonuclease Z [Escherichia coli DEC7D]
gi|378038384|gb|EHW00899.1| ribonuclease Z [Escherichia coli DEC7E]
gi|378048068|gb|EHW10424.1| ribonuclease Z [Escherichia coli DEC8B]
gi|378053175|gb|EHW15475.1| ribonuclease Z [Escherichia coli DEC8C]
gi|378061364|gb|EHW23549.1| ribonuclease Z [Escherichia coli DEC8D]
gi|378074197|gb|EHW36236.1| ribonuclease Z [Escherichia coli DEC9A]
gi|378076984|gb|EHW38982.1| ribonuclease Z [Escherichia coli DEC9B]
gi|378089977|gb|EHW51817.1| ribonuclease Z [Escherichia coli DEC9D]
gi|378094887|gb|EHW56678.1| ribonuclease Z [Escherichia coli DEC9E]
gi|378110643|gb|EHW72237.1| ribonuclease Z [Escherichia coli DEC10C]
gi|378128199|gb|EHW89584.1| ribonuclease Z [Escherichia coli DEC10E]
gi|378130010|gb|EHW91380.1| ribonuclease Z [Escherichia coli DEC11A]
gi|378131296|gb|EHW92654.1| ribonuclease Z [Escherichia coli DEC10F]
gi|378142623|gb|EHX03825.1| ribonuclease Z [Escherichia coli DEC11B]
gi|378148113|gb|EHX09253.1| ribonuclease Z [Escherichia coli DEC11D]
gi|378169129|gb|EHX30029.1| ribonuclease Z [Escherichia coli DEC12A]
gi|378170003|gb|EHX30889.1| ribonuclease Z [Escherichia coli DEC12C]
gi|378182329|gb|EHX42982.1| ribonuclease Z [Escherichia coli DEC12D]
gi|378185386|gb|EHX46011.1| ribonuclease Z [Escherichia coli DEC13A]
gi|378187627|gb|EHX48238.1| ribonuclease Z [Escherichia coli DEC12E]
gi|378200081|gb|EHX60537.1| ribonuclease Z [Escherichia coli DEC13C]
gi|378200529|gb|EHX60984.1| ribonuclease Z [Escherichia coli DEC13B]
gi|378202561|gb|EHX62988.1| ribonuclease Z [Escherichia coli DEC13D]
gi|378212349|gb|EHX72672.1| ribonuclease Z [Escherichia coli DEC13E]
gi|378217363|gb|EHX77642.1| ribonuclease Z [Escherichia coli DEC14A]
gi|378218928|gb|EHX79197.1| ribonuclease Z [Escherichia coli DEC14B]
gi|378227906|gb|EHX88074.1| ribonuclease Z [Escherichia coli DEC14C]
gi|378231371|gb|EHX91482.1| ribonuclease Z [Escherichia coli DEC14D]
gi|378237559|gb|EHX97582.1| ribonuclease Z [Escherichia coli DEC15A]
gi|378247273|gb|EHY07192.1| ribonuclease Z [Escherichia coli DEC15C]
gi|378254237|gb|EHY14101.1| ribonuclease Z [Escherichia coli DEC15D]
gi|378258876|gb|EHY18692.1| ribonuclease Z [Escherichia coli DEC15E]
gi|383103697|gb|AFG41206.1| ribonuclease Z [Escherichia coli P12b]
gi|385157084|gb|EIF19077.1| ribonuclease Z [Escherichia coli O32:H37 str. P4]
gi|385536967|gb|EIF83852.1| ribonuclease Z [Escherichia coli M919]
gi|385706586|gb|EIG43625.1| ribonuclease Z [Escherichia coli H730]
gi|386121476|gb|EIG70091.1| ribonuclease Z [Escherichia sp. 4_1_40B]
gi|388339433|gb|EIL05818.1| ribonuclease Z [Escherichia coli O103:H2 str. CVM9450]
gi|388342103|gb|EIL08164.1| ribonuclease Z [Escherichia coli O103:H25 str. CVM9340]
gi|388345398|gb|EIL11169.1| ribonuclease Z [Escherichia coli O111:H11 str. CVM9534]
gi|388362937|gb|EIL26902.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9574]
gi|388367151|gb|EIL30845.1| ribonuclease Z [Escherichia coli O111:H11 str. CVM9545]
gi|388373949|gb|EIL37172.1| hypothetical protein ECO10026_09317 [Escherichia coli O26:H11 str.
CVM10026]
gi|388376292|gb|EIL39227.1| ribonuclease Z [Escherichia coli O26:H11 str. CVM9942]
gi|391249940|gb|EIQ09163.1| ribonuclease Z [Shigella flexneri CCH060]
gi|391278185|gb|EIQ36902.1| ribonuclease Z [Shigella boydii 4444-74]
gi|391300603|gb|EIQ58515.1| ribonuclease Z [Shigella dysenteriae 225-75]
gi|391312678|gb|EIQ70286.1| ribonuclease Z [Escherichia coli EPEC C342-62]
gi|394384390|gb|EJE61950.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9602]
gi|394396090|gb|EJE72470.1| ribonuclease BN [Escherichia coli O26:H11 str. CVM10224]
gi|394398738|gb|EJE74880.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9634]
gi|394403040|gb|EJE78716.1| ribonuclease Z [Escherichia coli O26:H11 str. CVM10021]
gi|394409831|gb|EJE84288.1| ribonuclease Z [Escherichia coli O111:H11 str. CVM9553]
gi|394412610|gb|EJE86740.1| ribonuclease Z [Escherichia coli O111:H11 str. CVM9455]
gi|394424806|gb|EJE97877.1| ribonuclease Z [Escherichia coli O26:H11 str. CVM9952]
gi|394429898|gb|EJF02287.1| ribonuclease Z [Escherichia coli O26:H11 str. CVM10030]
gi|397896879|gb|EJL13290.1| ribonuclease Z [Shigella flexneri 6603-63]
gi|404291103|gb|EJZ48001.1| ribonuclease Z [Escherichia sp. 1_1_43]
gi|408193218|gb|EKI18771.1| ribonuclease Z [Escherichia coli TW15901]
gi|408201670|gb|EKI26819.1| ribonuclease Z [Escherichia coli TW00353]
gi|408213836|gb|EKI38315.1| ribonuclease Z [Escherichia coli 3006]
gi|408296394|gb|EKJ14635.1| ribonuclease Z [Escherichia coli EC1865]
gi|408568172|gb|EKK44210.1| ribonuclease Z [Escherichia coli 8.0566]
gi|408569162|gb|EKK45167.1| ribonuclease Z [Escherichia coli 8.0569]
gi|421934345|gb|EKT92120.1| ribonuclease BN [Escherichia coli O111:H8 str. CFSAN001632]
gi|421936116|gb|EKT93784.1| ribonuclease BN [Escherichia coli O26:H11 str. CFSAN001629]
gi|421941825|gb|EKT99201.1| ribonuclease BN [Escherichia coli O111:H11 str. CFSAN001630]
gi|430938987|gb|ELC59210.1| ribonuclease Z [Escherichia coli KTE44]
gi|431007009|gb|ELD21978.1| ribonuclease Z [Escherichia coli KTE210]
gi|431063309|gb|ELD72558.1| ribonuclease Z [Escherichia coli KTE233]
gi|431092943|gb|ELD98614.1| ribonuclease Z [Escherichia coli KTE51]
gi|431114585|gb|ELE18113.1| ribonuclease Z [Escherichia coli KTE56]
gi|431170711|gb|ELE70900.1| ribonuclease Z [Escherichia coli KTE81]
gi|431213912|gb|ELF11767.1| ribonuclease Z [Escherichia coli KTE142]
gi|431221885|gb|ELF19182.1| ribonuclease Z [Escherichia coli KTE156]
gi|431226591|gb|ELF23750.1| ribonuclease Z [Escherichia coli KTE161]
gi|431282246|gb|ELF73131.1| ribonuclease Z [Escherichia coli KTE42]
gi|431296726|gb|ELF86437.1| ribonuclease Z [Escherichia coli KTE29]
gi|431354561|gb|ELG41287.1| ribonuclease Z [Escherichia coli KTE91]
gi|431376259|gb|ELG61582.1| ribonuclease Z [Escherichia coli KTE135]
gi|431385609|gb|ELG69596.1| ribonuclease Z [Escherichia coli KTE136]
gi|431420180|gb|ELH02512.1| ribonuclease Z [Escherichia coli KTE154]
gi|431453221|gb|ELH33631.1| ribonuclease Z [Escherichia coli KTE184]
gi|431467175|gb|ELH47186.1| ribonuclease Z [Escherichia coli KTE197]
gi|431564420|gb|ELI37594.1| ribonuclease Z [Escherichia coli KTE120]
gi|431645635|gb|ELJ13179.1| ribonuclease Z [Escherichia coli KTE163]
gi|431715790|gb|ELJ79935.1| ribonuclease Z [Escherichia coli KTE90]
gi|443422854|gb|AGC87758.1| ribonuclease BN [Escherichia coli APEC O78]
gi|449319731|gb|EMD09777.1| ribonuclease BN [Escherichia coli S17]
Length = 305
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|312973471|ref|ZP_07787643.1| ribonuclease Z [Escherichia coli 1827-70]
gi|415798478|ref|ZP_11498453.1| ribonuclease Z [Escherichia coli E128010]
gi|415813410|ref|ZP_11505219.1| ribonuclease Z [Escherichia coli LT-68]
gi|417299894|ref|ZP_12087121.1| ribonuclease BN [Escherichia coli 900105 (10e)]
gi|417618869|ref|ZP_12269283.1| ribonuclease Z [Escherichia coli G58-1]
gi|417624161|ref|ZP_12274460.1| ribonuclease Z [Escherichia coli STEC_H.1.8]
gi|417640027|ref|ZP_12290168.1| ribonuclease Z [Escherichia coli TX1999]
gi|417729194|ref|ZP_12377892.1| ribonuclease Z [Shigella flexneri K-671]
gi|417734530|ref|ZP_12383181.1| ribonuclease Z [Shigella flexneri 2747-71]
gi|417744148|ref|ZP_12392674.1| ribonuclease Z [Shigella flexneri 2930-71]
gi|419154669|ref|ZP_13699232.1| ribonuclease Z [Escherichia coli DEC6C]
gi|419197777|ref|ZP_13741163.1| ribonuclease Z [Escherichia coli DEC8A]
gi|419222278|ref|ZP_13765200.1| ribonuclease Z [Escherichia coli DEC8E]
gi|419238575|ref|ZP_13781290.1| ribonuclease Z [Escherichia coli DEC9C]
gi|419255732|ref|ZP_13798248.1| ribonuclease Z [Escherichia coli DEC10A]
gi|419261954|ref|ZP_13804371.1| ribonuclease Z [Escherichia coli DEC10B]
gi|419273445|ref|ZP_13815740.1| ribonuclease Z [Escherichia coli DEC10D]
gi|419300996|ref|ZP_13842995.1| ribonuclease Z [Escherichia coli DEC11C]
gi|419312134|ref|ZP_13853996.1| ribonuclease Z [Escherichia coli DEC11E]
gi|419323722|ref|ZP_13865415.1| ribonuclease Z [Escherichia coli DEC12B]
gi|419397397|ref|ZP_13938165.1| ribonuclease Z [Escherichia coli DEC15B]
gi|420321171|ref|ZP_14823000.1| ribonuclease Z [Shigella flexneri 2850-71]
gi|420336964|ref|ZP_14838533.1| ribonuclease Z [Shigella flexneri K-315]
gi|420342593|ref|ZP_14844066.1| ribonuclease Z [Shigella flexneri K-404]
gi|420386334|ref|ZP_14885684.1| ribonuclease Z [Escherichia coli EPECa12]
gi|421683347|ref|ZP_16123142.1| ribonuclease Z [Shigella flexneri 1485-80]
gi|422790472|ref|ZP_16843176.1| ribonuclease BN [Escherichia coli TA007]
gi|310332066|gb|EFP99301.1| ribonuclease Z [Escherichia coli 1827-70]
gi|323161604|gb|EFZ47489.1| ribonuclease Z [Escherichia coli E128010]
gi|323171951|gb|EFZ57595.1| ribonuclease Z [Escherichia coli LT-68]
gi|323973026|gb|EGB68220.1| ribonuclease BN [Escherichia coli TA007]
gi|332755319|gb|EGJ85683.1| ribonuclease Z [Shigella flexneri K-671]
gi|332756604|gb|EGJ86955.1| ribonuclease Z [Shigella flexneri 2747-71]
gi|332766089|gb|EGJ96299.1| ribonuclease Z [Shigella flexneri 2930-71]
gi|345375583|gb|EGX07530.1| ribonuclease Z [Escherichia coli G58-1]
gi|345377122|gb|EGX09054.1| ribonuclease Z [Escherichia coli STEC_H.1.8]
gi|345393029|gb|EGX22807.1| ribonuclease Z [Escherichia coli TX1999]
gi|377997251|gb|EHV60358.1| ribonuclease Z [Escherichia coli DEC6C]
gi|378046334|gb|EHW08713.1| ribonuclease Z [Escherichia coli DEC8A]
gi|378065367|gb|EHW27515.1| ribonuclease Z [Escherichia coli DEC8E]
gi|378083614|gb|EHW45545.1| ribonuclease Z [Escherichia coli DEC9C]
gi|378099671|gb|EHW61374.1| ribonuclease Z [Escherichia coli DEC10A]
gi|378105644|gb|EHW67283.1| ribonuclease Z [Escherichia coli DEC10B]
gi|378115932|gb|EHW77465.1| ribonuclease Z [Escherichia coli DEC10D]
gi|378150612|gb|EHX11727.1| ribonuclease Z [Escherichia coli DEC11C]
gi|378157762|gb|EHX18793.1| ribonuclease Z [Escherichia coli DEC11E]
gi|378164798|gb|EHX25739.1| ribonuclease Z [Escherichia coli DEC12B]
gi|378243518|gb|EHY03464.1| ribonuclease Z [Escherichia coli DEC15B]
gi|386256729|gb|EIJ12223.1| ribonuclease BN [Escherichia coli 900105 (10e)]
gi|391247692|gb|EIQ06938.1| ribonuclease Z [Shigella flexneri 2850-71]
gi|391260703|gb|EIQ19757.1| ribonuclease Z [Shigella flexneri K-315]
gi|391265666|gb|EIQ24633.1| ribonuclease Z [Shigella flexneri K-404]
gi|391305044|gb|EIQ62839.1| ribonuclease Z [Escherichia coli EPECa12]
gi|404338846|gb|EJZ65290.1| ribonuclease Z [Shigella flexneri 1485-80]
Length = 294
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 49 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 106
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 107 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 139
>gi|432895286|ref|ZP_20107006.1| ribonuclease Z [Escherichia coli KTE165]
gi|431421653|gb|ELH03865.1| ribonuclease Z [Escherichia coli KTE165]
Length = 305
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+ + GE ++ +R V + H + GY I
Sbjct: 118 IAEISTGEIFDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|157158471|ref|YP_001463616.1| ribonuclease Z [Escherichia coli E24377A]
gi|218554828|ref|YP_002387741.1| ribonuclease Z [Escherichia coli IAI1]
gi|218695871|ref|YP_002403538.1| ribonuclease Z [Escherichia coli 55989]
gi|300926372|ref|ZP_07142172.1| ribonuclease Z [Escherichia coli MS 182-1]
gi|301328757|ref|ZP_07221810.1| ribonuclease Z [Escherichia coli MS 78-1]
gi|307311168|ref|ZP_07590812.1| ribonuclease BN [Escherichia coli W]
gi|378712294|ref|YP_005277187.1| ribonuclease BN [Escherichia coli KO11FL]
gi|407470152|ref|YP_006783405.1| ribonuclease Z [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407481185|ref|YP_006778334.1| ribonuclease Z [Escherichia coli O104:H4 str. 2011C-3493]
gi|410481732|ref|YP_006769278.1| ribonuclease Z [Escherichia coli O104:H4 str. 2009EL-2050]
gi|417581787|ref|ZP_12232589.1| ribonuclease Z [Escherichia coli STEC_B2F1]
gi|417667683|ref|ZP_12317228.1| ribonuclease Z [Escherichia coli STEC_O31]
gi|417805824|ref|ZP_12452773.1| ribonuclease Z [Escherichia coli O104:H4 str. LB226692]
gi|417833567|ref|ZP_12480015.1| ribonuclease Z [Escherichia coli O104:H4 str. 01-09591]
gi|419804006|ref|ZP_14329170.1| ribonuclease BN [Escherichia coli AI27]
gi|422956368|ref|ZP_16968842.1| ribonuclease Z [Escherichia coli H494]
gi|423019820|ref|ZP_17010529.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4404]
gi|423030808|ref|ZP_17021496.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4623]
gi|423045482|ref|ZP_17036142.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423054021|ref|ZP_17042828.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423060996|ref|ZP_17049792.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423706305|ref|ZP_17680688.1| ribonuclease Z [Escherichia coli B799]
gi|429776690|ref|ZP_19308669.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02033-1]
gi|429797137|ref|ZP_19328944.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02281]
gi|429812147|ref|ZP_19343832.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-03439]
gi|429914265|ref|ZP_19380213.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-4984]
gi|429925115|ref|ZP_19391029.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-4986]
gi|429929052|ref|ZP_19394954.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-4987]
gi|429935591|ref|ZP_19401477.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-4988]
gi|429943951|ref|ZP_19409814.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-6006]
gi|429954863|ref|ZP_19420695.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec12-0466]
gi|432765656|ref|ZP_20000094.1| ribonuclease Z [Escherichia coli KTE48]
gi|433092650|ref|ZP_20278917.1| ribonuclease Z [Escherichia coli KTE138]
gi|450218609|ref|ZP_21895983.1| ribonuclease Z [Escherichia coli O08]
gi|166991099|sp|A7ZP87.1|RBN_ECO24 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|254808631|sp|B7LAT4.1|RBN_ECO55 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|254808634|sp|B7M5V1.1|RBN_ECO8A RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|157080501|gb|ABV20209.1| ribonuclease Z [Escherichia coli E24377A]
gi|218352603|emb|CAU98384.1| binuclear zinc phosphodiesterase [Escherichia coli 55989]
gi|218361596|emb|CAQ99188.1| binuclear zinc phosphodiesterase [Escherichia coli IAI1]
gi|300417649|gb|EFK00960.1| ribonuclease Z [Escherichia coli MS 182-1]
gi|300844905|gb|EFK72665.1| ribonuclease Z [Escherichia coli MS 78-1]
gi|306908674|gb|EFN39171.1| ribonuclease BN [Escherichia coli W]
gi|323377855|gb|ADX50123.1| ribonuclease BN [Escherichia coli KO11FL]
gi|340734449|gb|EGR63579.1| ribonuclease Z [Escherichia coli O104:H4 str. 01-09591]
gi|340739736|gb|EGR73968.1| ribonuclease Z [Escherichia coli O104:H4 str. LB226692]
gi|345337558|gb|EGW69990.1| ribonuclease Z [Escherichia coli STEC_B2F1]
gi|354889500|gb|EHF49749.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4404]
gi|354897506|gb|EHF57664.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4623]
gi|354912918|gb|EHF72916.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354915923|gb|EHF75899.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354917838|gb|EHF77800.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C4]
gi|371599903|gb|EHN88681.1| ribonuclease Z [Escherichia coli H494]
gi|384472933|gb|EIE56980.1| ribonuclease BN [Escherichia coli AI27]
gi|385712189|gb|EIG49144.1| ribonuclease Z [Escherichia coli B799]
gi|397784829|gb|EJK95682.1| ribonuclease Z [Escherichia coli STEC_O31]
gi|406776894|gb|AFS56318.1| ribonuclease Z [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407053482|gb|AFS73533.1| ribonuclease Z [Escherichia coli O104:H4 str. 2011C-3493]
gi|407066187|gb|AFS87234.1| ribonuclease Z [Escherichia coli O104:H4 str. 2009EL-2071]
gi|429362087|gb|EKY98735.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02281]
gi|429362663|gb|EKY99309.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02033-1]
gi|429379002|gb|EKZ15508.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-03439]
gi|429405269|gb|EKZ41535.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-4984]
gi|429414495|gb|EKZ50670.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-4987]
gi|429421104|gb|EKZ57226.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-4986]
gi|429432125|gb|EKZ68165.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-4988]
gi|429438536|gb|EKZ74529.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-6006]
gi|429457820|gb|EKZ93658.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec12-0466]
gi|431309831|gb|ELF98024.1| ribonuclease Z [Escherichia coli KTE48]
gi|431609980|gb|ELI79285.1| ribonuclease Z [Escherichia coli KTE138]
gi|449317669|gb|EMD07754.1| ribonuclease Z [Escherichia coli O08]
Length = 305
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|1381661|gb|AAB02732.1| arylsulfatase homolog [Escherichia coli]
Length = 305
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|419887743|ref|ZP_14408306.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9570]
gi|388362154|gb|EIL26194.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9570]
Length = 283
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 38 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 95
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 96 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 128
>gi|417718164|ref|ZP_12367063.1| ribonuclease Z [Shigella flexneri K-227]
gi|333016780|gb|EGK36108.1| ribonuclease Z [Shigella flexneri K-227]
Length = 283
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 38 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 95
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 96 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 128
>gi|187732862|ref|YP_001881094.1| ribonuclease Z [Shigella boydii CDC 3083-94]
gi|419176035|ref|ZP_13719851.1| ribonuclease Z [Escherichia coli DEC7B]
gi|254808664|sp|B2TW54.1|RBN_SHIB3 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|187429854|gb|ACD09128.1| ribonuclease Z [Shigella boydii CDC 3083-94]
gi|378032007|gb|EHV94589.1| ribonuclease Z [Escherichia coli DEC7B]
Length = 305
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|432851559|ref|ZP_20081944.1| ribonuclease Z [Escherichia coli KTE144]
gi|431399897|gb|ELG83287.1| ribonuclease Z [Escherichia coli KTE144]
Length = 311
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|394992227|ref|ZP_10385017.1| ribonuclease Z [Bacillus sp. 916]
gi|393806957|gb|EJD68286.1| ribonuclease Z [Bacillus sp. 916]
Length = 308
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 89/202 (44%), Gaps = 34/202 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK +E + + ++ L
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLNV--TATHLTYPLT 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ ++ G +E +V H + + GY + L +LK+ I G
Sbjct: 117 VHEIEQGTVFE-DEQFIVTAASVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIP-PGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDT-TSEFMLN-PRNADALRAKIL 274
+K+KK G +T D + P+ VAF+GDT SE + RNAD +L
Sbjct: 175 QKIKK-GETVTLDDGRIINGRDFLEPPKKGRIVAFSGDTRVSERVTELARNAD-----VL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHT 296
+ EATF ++ + H H T
Sbjct: 229 VHEATFAKEDAKLAHNYYHATT 250
>gi|422342400|ref|ZP_16423340.1| ribonuclease Z [Treponema denticola F0402]
gi|325473715|gb|EGC76904.1| ribonuclease Z [Treponema denticola F0402]
Length = 247
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPS 154
FD G R R + N +FI+H H DHI GLP + + S + +P I PP
Sbjct: 35 FDCGEGTQVALRRLNLRWKRINAIFISHTHADHITGLPGLLMLSSQVDREEPLYIIGPPK 94
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGE---TYEMRNDIVVRPFKTHHVIPSQGYVI 211
+ E V E R + ++ +N +++ ++ E Y + VR F H P GY
Sbjct: 95 VAEYV----ETSRKVLDMYINYEIIVKEIKEPGIVYST-EEFQVRSFWLDHTKPCMGYTF 149
>gi|383619856|ref|ZP_09946262.1| ribonuclease Z [Halobiforma lacisalsi AJ5]
gi|448696592|ref|ZP_21698004.1| ribonuclease Z [Halobiforma lacisalsi AJ5]
gi|445783220|gb|EMA34055.1| ribonuclease Z [Halobiforma lacisalsi AJ5]
Length = 307
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 105/260 (40%), Gaps = 52/260 (20%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + + + P I P +
Sbjct: 31 FDAGEGTQRQMMRFGTGFSVSHLFVTHLHGDHVFGIPGLLQTMAFNDREEPLAIHTPQAT 90
Query: 156 KEDVEKLFEIHRSLGNV-ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ ++ L +LGN + + + + G+ +D VR F+T H S GY +
Sbjct: 91 RRQLKGLVN---ALGNRPDFPIRISEVGDGDVAYRADDFEVRTFETDHDTRSVGYALVED 147
Query: 215 RKK--------------LKKQYIHL-KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
+K + ++ L +G +E + VE ++ P + +TGDT
Sbjct: 148 DRKGRFDRERAEELGVPVGPKFSRLHEGDPVELEDGTVVEPDQVVGDPRPGRSIVYTGDT 207
Query: 256 -----TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQ 310
T E P +LI +ATF DD A++ G T S + ++
Sbjct: 208 RPTVRTIEVADEP--------DLLIHDATFADD-----RAERAGETAHS--TARGAAEIA 252
Query: 311 SKVSAKVVPLTEGFKSVYTS 330
S+ AK + L S YT
Sbjct: 253 SRAGAKRLALVH-ISSRYTG 271
>gi|297582766|ref|YP_003698546.1| ribonuclease Z [Bacillus selenitireducens MLS10]
gi|297141223|gb|ADH97980.1| ribonuclease Z [Bacillus selenitireducens MLS10]
Length = 309
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 111/276 (40%), Gaps = 52/276 (18%)
Query: 70 AVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCA----FDIGRCPTRAIQQNFVFITHGH 125
A+V KG+D G + C +I C I P +A VFITH H
Sbjct: 21 AMVMKGVD------------GKKACWMI---DCGEGTQHQILHAPIKAGAITKVFITHLH 65
Query: 126 LDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVG 184
DH+ GLP ++ SR P T++ P ++ +E+ + S ++ L + ++ G
Sbjct: 66 GDHLYGLPGFLGSRSFQGADQPLTVYGPSGLRPYIEQSLAV--SGTHLTYPLTVHEVEEG 123
Query: 185 ETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQIEKLKKSG 237
E + N + H +PS GY L R++L K I G + LK+
Sbjct: 124 EIVDDGN-WRISCLALDHRMPSFGYRFDEKEQPGRLDRERLLKDDIP-SGPWLGDLKEQK 181
Query: 238 ---------VEITDIILSP----EVAFTGDTTSEFMLNPRNAD-ALRAKILITEATFLDD 283
V+ D + P + GDT P AD A A +L+ EATF+
Sbjct: 182 TVTLPDGRVVDGRDYVTEPVKGRRIVILGDTRP----MPAVADFAKEADLLVHEATFMAG 237
Query: 284 EMSIEHAQQHGHT-HLSEDIRQAVLK--LQSKVSAK 316
E H T +E RQA + L + +SA+
Sbjct: 238 ERETADRFAHSTTLDAAEIARQADVSRLLLTHISAR 273
>gi|410670092|ref|YP_006922463.1| beta-lactamase-like protein [Methanolobus psychrophilus R15]
gi|409169220|gb|AFV23095.1| beta-lactamase-like protein [Methanolobus psychrophilus R15]
Length = 448
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 65/163 (39%), Gaps = 22/163 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ THGHLDHIG +P L + I P ++ + R G + ++
Sbjct: 78 IVCTHGHLDHIGAIPK------LAHRYAAPIIATPYTTALIKHQIDSERKFG---VKNNI 128
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVI----------PSQGYVIYLLRKKLKKQYIHLKGK 228
VAL GET E+ DI + T H I PS G V+Y K + +
Sbjct: 129 VALKAGETLEITKDITIEFINTQHSIIDTVFVAIHTPS-GAVVYACDFKFDRTPTLGEVP 187
Query: 229 QIEKLKKSGVE--ITDIILSPEVAFTGDTTSEFMLNPRNADAL 269
++LK+ G E I I S G T SE + + D L
Sbjct: 188 DFDRLKELGKEGVIALITESTNAGRNGKTPSELIAHMMLKDVL 230
>gi|423395904|ref|ZP_17373105.1| hypothetical protein ICU_01598 [Bacillus cereus BAG2X1-1]
gi|423406779|ref|ZP_17383928.1| hypothetical protein ICY_01464 [Bacillus cereus BAG2X1-3]
gi|401653646|gb|EJS71190.1| hypothetical protein ICU_01598 [Bacillus cereus BAG2X1-1]
gi|401660069|gb|EJS77552.1| hypothetical protein ICY_01464 [Bacillus cereus BAG2X1-3]
Length = 556
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDANSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|417133550|ref|ZP_11978335.1| ribonuclease BN [Escherichia coli 5.0588]
gi|386151404|gb|EIH02693.1| ribonuclease BN [Escherichia coli 5.0588]
Length = 294
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 49 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 106
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 107 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 139
>gi|189423987|ref|YP_001951164.1| beta-lactamase [Geobacter lovleyi SZ]
gi|189420246|gb|ACD94644.1| beta-lactamase domain protein [Geobacter lovleyi SZ]
Length = 270
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH H DH GG+ L ++P T+++PPS +E LF H + +E +
Sbjct: 75 LFITHWHYDHFGGIGELEYYVKLKRMQPITLYLPPSARE----LF--HNAFPALEEIFTV 128
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+ +Y + ++++ P H I + G+++
Sbjct: 129 QTWEFFRSYPL-GELLITPLPARHSIETAGFMV 160
>gi|419938928|ref|ZP_14455733.1| ribonuclease Z [Escherichia coli 75]
gi|388409043|gb|EIL69369.1| ribonuclease Z [Escherichia coli 75]
Length = 311
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|116492893|ref|YP_804628.1| beta-lactamase superfamily hydrolase [Pediococcus pentosaceus ATCC
25745]
gi|122265643|sp|Q03F36.1|RNZ_PEDPA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|116103043|gb|ABJ68186.1| RNAse Z [Pediococcus pentosaceus ATCC 25745]
Length = 308
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 36/225 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR TIF P IK+ V I S + +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSNQGGSEELTIFGPTGIKDFVMTSLRISESKLSYRIKFV 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+A + G +E +N +V + H I S G+ + LL KLK+ Y
Sbjct: 119 EIAQE-GVLFEDQN-YIVNVAELDHRIKSYGFRVKEKDHPGELLVDKLKELAIPSGPIYG 176
Query: 224 HLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
+K GK++ + D I P+ V GDT T L ++ADA L+
Sbjct: 177 QIKQGKEVTLDDGRVINGQDFIGKPQPGRVVTVLGDTRQTPNIELLAKDADA-----LVH 231
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
E+TF E S+ H S +I+ A K+ + +A+ + LT
Sbjct: 232 ESTFGKQEGSLARNYYH-----STNIQAA--KIAKQANARQLLLT 269
>gi|414881434|tpg|DAA58565.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 400
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 21/156 (13%)
Query: 98 PELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN---LKPPTIFVPPS 154
P+ A P + V ITH H+DHIG LP + G + + PT + P
Sbjct: 45 PDFARALAAWGAPDFTTAISCVVITHFHMDHIGALPYFTEVCGYHGPIYMTYPTKALAPF 104
Query: 155 IKEDVEKLF------EIHRSLGNVELNLDLVA-LDVGETYEMRNDIVVRPFKTHHVIPSQ 207
+ ED K+ E S ++ + V +D+ +T ++ D+V+R + HVI +
Sbjct: 105 MLEDYRKVTMGQRGEEKQYSYEDILRCMKKVTPMDLKQTVQVDKDLVIRAYYAGHVIGAA 164
Query: 208 GYVIYLLRKKLKKQYI---------HLKGKQIEKLK 234
+IY Y HL QI++LK
Sbjct: 165 --MIYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRLK 198
>gi|417145985|ref|ZP_11986943.1| ribonuclease BN [Escherichia coli 1.2264]
gi|386163437|gb|EIH25232.1| ribonuclease BN [Escherichia coli 1.2264]
Length = 311
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|293446609|ref|ZP_06663031.1| ribonuclease Z [Escherichia coli B088]
gi|332278582|ref|ZP_08390995.1| ribonuclease Z [Shigella sp. D9]
gi|386609647|ref|YP_006125133.1| binuclear zinc phosphodiesterase [Escherichia coli W]
gi|386700755|ref|YP_006164592.1| ribonuclease Z [Escherichia coli KO11FL]
gi|386710133|ref|YP_006173854.1| ribonuclease Z [Escherichia coli W]
gi|417155640|ref|ZP_11993769.1| ribonuclease BN [Escherichia coli 96.0497]
gi|417163613|ref|ZP_11998801.1| ribonuclease BN [Escherichia coli 99.0741]
gi|417863409|ref|ZP_12508457.1| hypothetical protein C22711_0342 [Escherichia coli O104:H4 str.
C227-11]
gi|419930966|ref|ZP_14448557.1| ribonuclease Z [Escherichia coli 541-1]
gi|422777554|ref|ZP_16831206.1| ribonuclease BN [Escherichia coli H120]
gi|422988385|ref|ZP_16979158.1| ribonuclease Z [Escherichia coli O104:H4 str. C227-11]
gi|422995276|ref|ZP_16986040.1| ribonuclease Z [Escherichia coli O104:H4 str. C236-11]
gi|423000350|ref|ZP_16991104.1| ribonuclease Z [Escherichia coli O104:H4 str. 09-7901]
gi|423004019|ref|ZP_16994765.1| ribonuclease Z [Escherichia coli O104:H4 str. 04-8351]
gi|423010593|ref|ZP_17001327.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-3677]
gi|423024987|ref|ZP_17015684.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4522]
gi|423038634|ref|ZP_17029308.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423043753|ref|ZP_17034420.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C2]
gi|429719865|ref|ZP_19254796.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-9450]
gi|429771748|ref|ZP_19303770.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02030]
gi|429785420|ref|ZP_19317317.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02092]
gi|429791310|ref|ZP_19323166.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02093]
gi|429798734|ref|ZP_19330534.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02318]
gi|429807247|ref|ZP_19338973.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02913]
gi|429817668|ref|ZP_19349308.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-04080]
gi|429822879|ref|ZP_19354476.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-03943]
gi|429904257|ref|ZP_19370236.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-9990]
gi|429908394|ref|ZP_19374358.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-9941]
gi|429919296|ref|ZP_19385228.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-5604]
gi|429941271|ref|ZP_19407145.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-5603]
gi|429951551|ref|ZP_19417397.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec12-0465]
gi|291323439|gb|EFE62867.1| ribonuclease Z [Escherichia coli B088]
gi|315061564|gb|ADT75891.1| binuclear zinc phosphodiesterase [Escherichia coli W]
gi|323944783|gb|EGB40849.1| ribonuclease BN [Escherichia coli H120]
gi|332100934|gb|EGJ04280.1| ribonuclease Z [Shigella sp. D9]
gi|341916698|gb|EGT66315.1| hypothetical protein C22711_0342 [Escherichia coli O104:H4 str.
C227-11]
gi|354862111|gb|EHF22549.1| ribonuclease Z [Escherichia coli O104:H4 str. C236-11]
gi|354867396|gb|EHF27818.1| ribonuclease Z [Escherichia coli O104:H4 str. C227-11]
gi|354869466|gb|EHF29876.1| ribonuclease Z [Escherichia coli O104:H4 str. 04-8351]
gi|354873321|gb|EHF33698.1| ribonuclease Z [Escherichia coli O104:H4 str. 09-7901]
gi|354880076|gb|EHF40412.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-3677]
gi|354893095|gb|EHF53299.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4522]
gi|354895232|gb|EHF55421.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354898867|gb|EHF59018.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C2]
gi|383392282|gb|AFH17240.1| ribonuclease Z [Escherichia coli KO11FL]
gi|383405825|gb|AFH12068.1| ribonuclease Z [Escherichia coli W]
gi|386168729|gb|EIH35245.1| ribonuclease BN [Escherichia coli 96.0497]
gi|386172838|gb|EIH44852.1| ribonuclease BN [Escherichia coli 99.0741]
gi|388399219|gb|EIL60021.1| ribonuclease Z [Escherichia coli 541-1]
gi|429348596|gb|EKY85357.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02092]
gi|429360005|gb|EKY96665.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02030]
gi|429361815|gb|EKY98467.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02093]
gi|429364977|gb|EKZ01594.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02318]
gi|429375708|gb|EKZ12241.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02913]
gi|429380353|gb|EKZ16844.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-03943]
gi|429391884|gb|EKZ28286.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-04080]
gi|429407035|gb|EKZ43289.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-9990]
gi|429410783|gb|EKZ47004.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-9450]
gi|429429438|gb|EKZ65507.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-5604]
gi|429436331|gb|EKZ72347.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-5603]
gi|429448158|gb|EKZ84075.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec12-0465]
gi|429451158|gb|EKZ87049.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-9941]
Length = 311
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 156
>gi|359415739|ref|ZP_09208146.1| ribonuclease Z [Candidatus Haloredivivus sp. G17]
gi|358033889|gb|EHK02387.1| ribonuclease Z [Candidatus Haloredivivus sp. G17]
Length = 301
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 87/206 (42%), Gaps = 37/206 (17%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPS 154
FD G R + + VFI+H H DH GL + + L +P I+ PP
Sbjct: 33 FDCGEGTQRTLMSEKLGIMKIDKVFISHWHADHFSGLLGLIQTMELEGRERPLYIYGPPR 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVI-- 211
+E +++ + G + D+ D+ E E+ D VRPF+ H I + G+
Sbjct: 93 TEEFTDRILDT----GYFNRSYDIFVEDLVEGDEIVGDGYQVRPFEVDHGINAFGFSFEE 148
Query: 212 --YLLRKKLKKQYIHLKG-------KQIEKLKKSGVEIT-----DIILSPEVAFTGDT-- 255
K K + + L+ K+ E + +G EI + + +V ++GDT
Sbjct: 149 ESSKKANKDKMKELELENSPKIGELKEGETIDWNGEEIRPEEVIEKMPGRKVVYSGDTAK 208
Query: 256 TSEFMLNPRNADALRAKILITEATFL 281
+ + N +AD +LI EAT L
Sbjct: 209 SDNLIQNAEDAD-----LLIHEATCL 229
>gi|258510650|ref|YP_003184084.1| ribonuclease Z [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257477376|gb|ACV57695.1| ribonuclease Z [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 313
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 86/214 (40%), Gaps = 35/214 (16%)
Query: 104 FDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKL 162
FD P R + VFITH H DHI GLP +++R N+ P ++ PP I+ V
Sbjct: 47 FDAPFGPNRV---DRVFITHLHGDHIFGLPGLLSTRSFPENVGPLRLYGPPGIRAFVRAT 103
Query: 163 FEIHRSLGNVELNLDLVALDVGETYEMRNDI-VVRPFKTHHVIPSQGYVI--YLLRKKLK 219
+ ++ ++ + E +R + VR H IPS GY + +L
Sbjct: 104 LDGSQT--HLSYEIQFHEWTSPEPAPVREGLYTVRAALLDHAIPSYGYRVEEAPFPGRLH 161
Query: 220 KQYIHLKGKQIEKLK---KSGVEIT----------DIILSPE----VAFTGDTTSEFMLN 262
+ +G Q L K+G ++T D + E +A GDT
Sbjct: 162 ADRLRAEGLQPSPLWSQLKAGEDVTLPDGRRLRAADFVDPAEPGRVIAILGDT------R 215
Query: 263 PRNAD---ALRAKILITEATFLDDEMSIEHAQQH 293
P A A A L+ EATFLD + A H
Sbjct: 216 PCKAAVELARGADCLVHEATFLDRHAHLASAFFH 249
>gi|292656881|ref|YP_003536778.1| metal dependent hydrolase [Haloferax volcanii DS2]
gi|448290882|ref|ZP_21482027.1| metal dependent hydrolase [Haloferax volcanii DS2]
gi|291371358|gb|ADE03585.1| metal dependent hydrolase [Haloferax volcanii DS2]
gi|445577935|gb|ELY32355.1| metal dependent hydrolase [Haloferax volcanii DS2]
Length = 248
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
V +TH HLDH+ L V +R L I P +E VE LF++H L LD+
Sbjct: 56 VLLTHHHLDHVSDLMALVKARWLAGADSLEIVGPEGTEELVEGLFDVHDYLRG---RLDI 112
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
+VG T V F+ H +P+ Y
Sbjct: 113 QIREVGPTEFGIAGFDVMGFEVRHSMPTLAY 143
>gi|421894260|ref|ZP_16324750.1| ribonuclease Z [Pediococcus pentosaceus IE-3]
gi|385272804|emb|CCG90122.1| ribonuclease Z [Pediococcus pentosaceus IE-3]
Length = 308
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 36/225 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR TIF P IK+ V I S + +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSNQGGSEELTIFGPTGIKDFVMTSLRISESKLSYRIKFV 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+A + G +E +N +V + H I S G+ + LL KLK+ Y
Sbjct: 119 EIAQE-GVLFEDQN-YIVNVAELDHRIKSYGFRVKEKDHSGELLVDKLKELAIPSGPIYG 176
Query: 224 HLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
+K GK++ + D I P+ V GDT T L ++ADA L+
Sbjct: 177 QIKQGKEVTLDDGRVINGQDFIGKPQPGRVVTVLGDTRQTPNIELLAKDADA-----LVH 231
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
E+TF E S+ H S +I+ A K+ + +A+ + LT
Sbjct: 232 ESTFGKQEGSLARNYYH-----STNIQAA--KIAKQANARQLLLT 269
>gi|421727251|ref|ZP_16166415.1| ribonuclease Z [Klebsiella oxytoca M5al]
gi|410372042|gb|EKP26759.1| ribonuclease Z [Klebsiella oxytoca M5al]
Length = 305
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P +KE VE + S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNTLPLTLYGPKGLKEFVETALRLSGSW--TDYP 115
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
L +V ++ G ++ V + +H + GY I
Sbjct: 116 LTIVEVEPGLVFD-EAGFRVTAWPLNHPVECYGYRI 150
>gi|345300142|ref|YP_004829500.1| ribonuclease Z [Enterobacter asburiae LF7a]
gi|345094079|gb|AEN65715.1| Ribonuclease Z [Enterobacter asburiae LF7a]
Length = 305
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL- 176
+FITH H DH+ GLP + SR + N P TI+ P I E VE + S + L +
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNANPLTIYGPAGIAEFVETTLRLSGSWTDYPLEVI 119
Query: 177 ---DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
D + D G Y ++ RP +H + GY I
Sbjct: 120 EITDGLVFDDG-AYR----VIARPL--NHPVECYGYRI 150
>gi|187934604|ref|YP_001885784.1| metallo-beta-lactamase superfamily protein [Clostridium botulinum B
str. Eklund 17B]
gi|187722757|gb|ACD23978.1| metallo-beta-lactamase superfamily protein [Clostridium botulinum B
str. Eklund 17B]
Length = 572
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 120 FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
FITHGH DHIGG+P YV L + P ++ +E E H L + +LNL
Sbjct: 87 FITHGHEDHIGGIP-YV----LQQINVP-VYATKLTLALIESKLEEHHMLNDCKLNL--- 137
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIP 205
++VGE+ +++N V + +H IP
Sbjct: 138 -VEVGESVKLKN-FNVEFIRNNHSIP 161
>gi|373107688|ref|ZP_09521981.1| ribonuclease Z [Stomatobaculum longum]
gi|371650646|gb|EHO16099.1| ribonuclease Z [Stomatobaculum longum]
Length = 304
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 35/225 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ + TH H DHI GLP + + G P + + P + +E++ RS+ EL
Sbjct: 55 DVICFTHYHADHISGLPGLLLTMGNAERTEPLLMIGP---KGLERVVTALRSIAP-ELPF 110
Query: 177 DLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLR------KKLKKQYIHL--- 225
+V ++ E E R V+ ++ +H + GY I + R + K+Q I L
Sbjct: 111 PIVFSELTEAREQRTAGPYVIDAYRVNHNVLCYGYCISIPRIGRFDAARAKEQGIPLKFW 170
Query: 226 ----KGKQIEKLKKSGVEITDIILSP-----EVAFTGDTTSEFMLNPRNADALRAKILIT 276
KG+ I K V D++L +V++ DT + AD A ++I
Sbjct: 171 NPLQKGQTITDGDK--VYTPDMVLGGARRGLKVSYCTDTRPVPAIAEYAAD---ADLMIC 225
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
E + + + + A++H H + E KL S+ K + LT
Sbjct: 226 EGMYGEADKQ-QKAREHKHMTMQE-----AAKLASEAKPKELWLT 264
>gi|365959155|ref|YP_004940722.1| ribonuclease Z [Flavobacterium columnare ATCC 49512]
gi|365735836|gb|AEW84929.1| ribonuclease Z [Flavobacterium columnare ATCC 49512]
Length = 301
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 28/199 (14%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FI+H H DH GL +++ L N P TI+ P IKE ++ + S ELN
Sbjct: 54 NQIFISHLHGDHFYGLIGLISTFSLLNRHNPLTIYGPVGIKEVIKLQLRLANSWPQYELN 113
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQ---IEK 232
+ E ++VR H + + G +L +K K++ +++ Q IE
Sbjct: 114 FVELKSKKSEIIYEDKKVIVRTIPLKHRVYTNG---FLFTEKTKERKLNIDKVQEYGIES 170
Query: 233 LK----KSGVEIT--------DIILS------PEVAFTGDTTSEFMLNPRNADALRAKIL 274
K+G +IT + ILS AF DT + + P D +IL
Sbjct: 171 CYFQNIKNGRDITLDDGRVLPNHILSFDPPKPKSYAFCSDTQYDESIVPLIKD---VQIL 227
Query: 275 ITEATFLDDEMSIEHAQQH 293
E+TFL+ E + H
Sbjct: 228 YHESTFLNAEEHLAEKTMH 246
>gi|256425584|ref|YP_003126237.1| beta-lactamase domain-containing protein [Chitinophaga pinensis DSM
2588]
gi|256040492|gb|ACU64036.1| beta-lactamase domain protein [Chitinophaga pinensis DSM 2588]
Length = 302
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 106 IGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFE 164
R R + ++FI+H H DH GL + S L + P T+F PP ++ + E
Sbjct: 44 FARYKIRRSRLRYIFISHLHGDHYFGLIGLINSLSLLGRQDPLTVFAPPELEAILRLQME 103
Query: 165 IHRSLGNVELNL-DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLK 219
++ EL L+ + G E + D+ V F T H IP G+ + ++K K
Sbjct: 104 CSGTVLQFELQFVPLLEENQGVILEDK-DLKVSFFPTQHRIPCYGFAFEMQKRKRK 158
>gi|429505789|ref|YP_007186973.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429487379|gb|AFZ91303.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 308
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 89/202 (44%), Gaps = 34/202 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK +E + + ++ L
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLNV--TATHLTYPLT 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ ++ G +E +V H + + GY + L +LK+ I G
Sbjct: 117 VHEIEEGTVFE-DEQFIVTAASVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIP-PGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDT-TSEFMLN-PRNADALRAKIL 274
+K+KK G +T D + P+ VAF+GDT SE + RNAD +L
Sbjct: 175 QKIKK-GETVTLDDGRIINGRDFLEPPKKGRIVAFSGDTRVSERVTELARNAD-----VL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHT 296
+ EATF ++ + H H T
Sbjct: 229 VHEATFAKEDAKLAHNYYHATT 250
>gi|429767458|ref|ZP_19299655.1| ribonuclease Z [Clostridium celatum DSM 1785]
gi|429180868|gb|EKY22069.1| ribonuclease Z [Clostridium celatum DSM 1785]
Length = 315
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLG---NV 172
+ + ITH H DHI GLP +A+ G L+P TI P I E V L I + L N+
Sbjct: 55 DVIMITHCHGDHIVGLPGILATIGNSGRLEPLTIIGPQGITEVVNSLRVIAKYLPYDINI 114
Query: 173 -----ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL----KKQYI 223
E+NL++ ++ E + +I + + H P GY Y R + K +
Sbjct: 115 IENPREVNLNVTKENI-NVVEEKGEIKLTTLEVEHSSPCIGYSFYFRRDRKFSVDKAEKN 173
Query: 224 HLKGKQIEKLKKSGVEITDIILSPEVAFTGD 254
+ KL+K G++ ++I+ +TG+
Sbjct: 174 RVPKILWNKLQKGGID--EVIVYDGKEYTGE 202
>gi|402299981|ref|ZP_10819535.1| ribonuclease Z [Bacillus alcalophilus ATCC 27647]
gi|401724844|gb|EJS98172.1| ribonuclease Z [Bacillus alcalophilus ATCC 27647]
Length = 305
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 86/200 (43%), Gaps = 31/200 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP + SR I+ PP +++ V + ++ + +
Sbjct: 59 IFISHLHGDHIFGLPGIIGSRSFQGATSELVIYGPPGLEDFVTQALKVSHTYLKYPIRFV 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLK---------KQ 221
V G ++ + + V + HV+PS Y + LL KLK Q
Sbjct: 119 EVT-KSGPLFD-EDGVKVEVLELDHVMPSFAYKLVEAEKPGELLIDKLKPFAVPPGPIYQ 176
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSP----EVAFTGDTT-SEFMLNPRNADALRAKILIT 276
I KG+QI + + D + P +V GDT SE ++ A A +LI
Sbjct: 177 QIK-KGEQIRLEDGTILNGKDFVGEPKRGRKVVIAGDTRPSEKLVE----FAAGADLLIH 231
Query: 277 EATFLDDEMSIEHAQQHGHT 296
EATF D EHA Q GH+
Sbjct: 232 EATFRSDLR--EHALQFGHS 249
>gi|308174175|ref|YP_003920880.1| ribonuclease Z [Bacillus amyloliquefaciens DSM 7]
gi|384160030|ref|YP_005542103.1| ribonuclease Z [Bacillus amyloliquefaciens TA208]
gi|384164955|ref|YP_005546334.1| ribonuclease Z [Bacillus amyloliquefaciens LL3]
gi|384169094|ref|YP_005550472.1| ribonuclease Z [Bacillus amyloliquefaciens XH7]
gi|307607039|emb|CBI43410.1| ribonuclease Z [Bacillus amyloliquefaciens DSM 7]
gi|328554118|gb|AEB24610.1| ribonuclease Z [Bacillus amyloliquefaciens TA208]
gi|328912510|gb|AEB64106.1| ribonuclease Z [Bacillus amyloliquefaciens LL3]
gi|341828373|gb|AEK89624.1| ribonuclease Z [Bacillus amyloliquefaciens XH7]
Length = 308
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 34/202 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + I+ P IK +E ++ + ++ L
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELAIYGPKGIKAFIETSLKV--TATHLTYPLA 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ ++ G +E + +V H + + GY I L +LK+ I G
Sbjct: 117 IHEIEEGTVFE-DDQFIVTAASVIHGVEAFGYRIQEKDIPGALQAGRLKEMNIP-PGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDT-TSEFMLN-PRNADALRAKIL 274
+K+KK G +T D + P+ VAF+GDT SE + RNAD +L
Sbjct: 175 QKIKK-GETVTLDDGRIINGEDFLEPPKKGRIVAFSGDTRVSERVTELARNAD-----VL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHT 296
+ EATF ++ + H H T
Sbjct: 229 VHEATFAKEDAKLAHNYYHATT 250
>gi|227357968|ref|ZP_03842310.1| ribonuclease Z [Proteus mirabilis ATCC 29906]
gi|227161703|gb|EEI46735.1| ribonuclease Z [Proteus mirabilis ATCC 29906]
Length = 317
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 96/227 (42%), Gaps = 36/227 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI GLP + SR + + P TI+ P IK +E + +S +
Sbjct: 69 NKIFITHLHGDHIFGLPGLLCSRSMGGTENPLTIYGPTGIKAFIETALTLSQSY--LTYP 126
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE---- 231
LD++ ++ I V H +P GY + K K L+ + I
Sbjct: 127 LDIIEIEQDGFLFEEEGIRVSCGALSHPVPCFGYRLEEDNKPGKLNADKLEAENIPRGPW 186
Query: 232 -KLKKSGVEIT----DII-----LSPE-----VAFTGDT--TSEFMLNPRNADALRAKIL 274
KL K G +T II LS E + GDT T + NAD ++
Sbjct: 187 YKLLKQGKTVTLPDGRIIDGKDYLSTEIKGRCIVIFGDTQPTPNAVKLAENAD-----VI 241
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
+ EATF D + A GH S I+ A +L K +AK + +T
Sbjct: 242 VHEATFKHD--MADKANSRGH---SSTIQAA--ELAKKANAKRLIIT 281
>gi|47459453|ref|YP_016315.1| hydrolase [Mycoplasma mobile 163K]
gi|47458783|gb|AAT28104.1| predicted hydrolase [Mycoplasma mobile 163K]
Length = 604
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 112 RAIQQNF--VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL 169
+A Q N +FITHGH DHIGG+P VA+ +K IF P + ++ F+ H L
Sbjct: 56 KANQDNIQALFITHGHEDHIGGIPYLVAT-----VKISKIFAPKIAIQFLKLKFQEHNIL 110
Query: 170 GNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPS 206
+E + ++ ++ D+VV + H IP
Sbjct: 111 QKIE----FIEIEKDSIHKF-GDVVVDFWTAQHSIPD 142
>gi|254827137|ref|ZP_05231824.1| metallo-beta-lactamase [Listeria monocytogenes FSL N3-165]
gi|258599520|gb|EEW12845.1| metallo-beta-lactamase [Listeria monocytogenes FSL N3-165]
Length = 306
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 87/205 (42%), Gaps = 40/205 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR G NL TI+ P I E VE + + ++
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSNL---TIYGPAGIAEYVETSLRLSGTRLTYKI 115
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKG 227
N + +D G +E +V H + S GY I L +KLK + G
Sbjct: 116 NFE--EIDPGVIFE-DEMFLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVE-AG 171
Query: 228 KQIEKLKKSG---------VEITDIILSPE----VAFTGD---TTSEFMLNPRNADALRA 271
+KLK ++ + I P+ ++ GD T+SE L AL A
Sbjct: 172 PVFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTRETSSELEL------ALNA 225
Query: 272 KILITEATFLDDEMSIEHAQQHGHT 296
IL+ EATF D+ + H T
Sbjct: 226 DILVHEATFEGDKAKMAGEYMHSTT 250
>gi|296272958|ref|YP_003655589.1| metal dependent phosphohydrolase [Arcobacter nitrofigilis DSM 7299]
gi|296097132|gb|ADG93082.1| metal dependent phosphohydrolase [Arcobacter nitrofigilis DSM 7299]
Length = 804
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
Query: 87 SIGGHETCVIIPELKCAFDIGR----CPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY 142
S+ + TC+ I D G T+A + +F+TH HLDH+ +P +
Sbjct: 18 SLDSNTTCIQI-NTNSVIDAGNIVKGLGTKAEYIDNIFLTHSHLDHLNDIPYLLDIFYEK 76
Query: 143 NLKPPTIFVPPSIKEDVEKL---FEIHRSLGNVE-LNLDLVA-----LDVGETYEMRNDI 193
KP TI+ E++ +EI +E LN L A +++ ET + +D
Sbjct: 77 RKKPITIYGTSKTLENLRNYILNWEIWPDFSEIELLNKKLKAIVFKPIEIDETIILEDDT 136
Query: 194 VVRPFKTHHVIPSQGYVI 211
+ K +H S GY+I
Sbjct: 137 KITVIKNNHTNSSCGYII 154
>gi|212223503|ref|YP_002306739.1| hydrolase [Thermococcus onnurineus NA1]
gi|212008460|gb|ACJ15842.1| hydrolase [Thermococcus onnurineus NA1]
Length = 268
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155
N++FITHGH DH GGL +++ +RG KP + P I
Sbjct: 60 NYIFITHGHYDHTGGLKVFLEARG----KPIKVIAHPEI 94
>gi|448683879|ref|ZP_21692499.1| ribonuclease Z [Haloarcula japonica DSM 6131]
gi|445783452|gb|EMA34281.1| ribonuclease Z [Haloarcula japonica DSM 6131]
Length = 309
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 97/231 (41%), Gaps = 35/231 (15%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + + I P
Sbjct: 33 FDCGEGTQRQMMRYGTGFAIDHLFVTHRHGDHVLGIPGLLQTWDFNERERAIAIHTPAGT 92
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ ++++L + + + + + ++ V+ G+ R++ +R +T H S GYV+
Sbjct: 93 RGNIKQLIQANGTTPSFPVRVNEVS--AGDVVLDRSEYEIRAIETAHRCASVGYVLDEDD 150
Query: 212 ---YLLRKKLKKQYIHLKGKQIEKLKKS-GVEITDIILSPEV-----------AFTGDTT 256
R+K + ++ G + KL + VE + PE +TGDT
Sbjct: 151 RKGKFDREKAEAEFGIPPGPKYSKLHRGEAVEHEGETIQPEAVVGPPRPGRRFVYTGDTL 210
Query: 257 -SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-RQA 305
+E ++ A +L+ +ATF +D A H + D+ RQA
Sbjct: 211 PAESVIEGSEG----ADLLVHDATFAEDRKERAKATAHSTAREAADVARQA 257
>gi|11499738|ref|NP_070980.1| hypothetical protein AF2155 [Archaeoglobus fulgidus DSM 4304]
gi|2648359|gb|AAB89085.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 234
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 16/122 (13%)
Query: 99 ELKCAFDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIF 150
E K FD G ++Q + V ITH HLDH G L + +R L IF
Sbjct: 28 ESKILFDCGIGSYHRLEQLGVSVNNIDAVCITHHHLDHNGDLLNILKARWLLGGGVLKIF 87
Query: 151 VPPSIKEDVEKLFEIHRSL-GNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
P K +E L E + L G ++ +D GE ++ + +R T H I S+GY
Sbjct: 88 GPKGTKSFMESLLEAYPYLRGKLKF-----IVDEGEAFD--ESVKIRAIPTVHSIESRGY 140
Query: 210 VI 211
V+
Sbjct: 141 VV 142
>gi|334136583|ref|ZP_08510044.1| ribonuclease Z [Paenibacillus sp. HGF7]
gi|333605916|gb|EGL17269.1| ribonuclease Z [Paenibacillus sp. HGF7]
Length = 311
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 89/213 (41%), Gaps = 32/213 (15%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R P + + +F+TH H DHI GLP ++SR P TI+ P IK V+ ++
Sbjct: 48 RSPVKLSKSEKLFVTHLHGDHIFGLPGLLSSRSYQGGDTPFTIYGPKGIKAYVDMSLQLS 107
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIH 224
+ + EL + + + G +E V H I GY I L KL+++ +H
Sbjct: 108 QVHLDYELVIREIPSEGGVVFEDET-FRVEAAPLEHRIECFGYRIVEKDLPGKLQQEKLH 166
Query: 225 ------------LKGKQIEKLKKSGVEI--TDI----ILSPEVAFTGDTTSEFMLNPRNA 266
LK Q KL + G E+ +D I +A GDT P
Sbjct: 167 ELGITAGPLYGRLKKGQTVKL-EDGRELRGSDFVGPSIKGRTIAILGDT------KPCGN 219
Query: 267 DALRAK---ILITEATFLDDEMSIEHAQQHGHT 296
AL A+ +L+ EATF + + A H T
Sbjct: 220 SALLAEGADVLVHEATFGAEREDLAAAYDHSTT 252
>gi|386286145|ref|ZP_10063343.1| ribonuclease Z [gamma proteobacterium BDW918]
gi|385280831|gb|EIF44745.1| ribonuclease Z [gamma proteobacterium BDW918]
Length = 326
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GLP +AS + +P T+ P I++ V F + + N+ L+
Sbjct: 58 IFITHVHGDHCYGLPGLIASANMSGRTEPLTVCAPDGIEQYVRNTFAL-TDVHNMRFPLN 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
V D + Y I V + H +P Y I
Sbjct: 117 FVRSDQPDFYYNDGAIEVSAVEMSHRVPCFAYQI 150
>gi|406967620|gb|EKD92655.1| hypothetical protein ACD_28C00372G0009 [uncultured bacterium]
Length = 661
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 94/236 (39%), Gaps = 48/236 (20%)
Query: 9 PSKLPTIFPFHPSSIP--KTP---QSPHHLSLQSHVGPLNALKSAGFLSSISRAIDEEEE 63
PS LP P P+ +P K P Q P+ L ++ P N + ++ S A + +
Sbjct: 30 PSSLPKNNPATPTPVPDPKAPTSSQQPNALQPKNK-RPFNKVNKNSMNTNTSVAPNAKPS 88
Query: 64 Y-----RKARAAVVRKG----IDLEGYTIEG--VSIGGHETCVIIPELKCAF-------- 104
+ + A+ A +KG I L G G + + ++ +II ++ F
Sbjct: 89 FFNRREKNAKPAFFKKGKLRIIPLGGLEEVGKNMMVFEYDKDIIIVDMGFQFPEEDMLGI 148
Query: 105 -----DIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDV 159
D+ R VF+THGHLDHIGG+P + G P ++ P V
Sbjct: 149 DYVLPDVSYLMERKQNIRGVFLTHGHLDHIGGIPYLLPRLGF-----PMVYGAPLTMGFV 203
Query: 160 EKLFEIHRSLGNVELNLDLVA----LDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+K E E L+ +A D E + + V F+ +H IP V+
Sbjct: 204 KKQLE--------EFRLNALARTRVFDPKEKFRL-GAFEVSFFRVNHSIPDAVAVV 250
>gi|406669566|ref|ZP_11076836.1| ribonuclease Z [Facklamia ignava CCUG 37419]
gi|405583262|gb|EKB57230.1| ribonuclease Z [Facklamia ignava CCUG 37419]
Length = 317
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 25/212 (11%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR + I+ PP IKE ++ + +S +++D
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGETSLNIYGPPGIKEYIQSNLRLTKSRLTYPIHID 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ-------YI 223
+ GE + +V+ H + S GY I LL +L K Y
Sbjct: 119 ELNPKGGE-LTTSSGWLVKYLPLQHGVLSLGYRIEQPDKPGELLIDQLAKYSIPNGPIYG 177
Query: 224 HLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
LK +I L ++P+ + GDT + + A A +L+ EA
Sbjct: 178 QLKRGEIVTLADGTQLDGRDFIAPDQKGKIITILGDTR---LCDNSRILAKDADVLVHEA 234
Query: 279 TFLDDEMSIEHAQQHG-HTHLSEDIRQAVLKL 309
T +E + +A H + H ++ ++A +KL
Sbjct: 235 THSGEEGQMAYAYYHSTNIHAAQVAKEANVKL 266
>gi|291613004|ref|YP_003523161.1| beta-lactamase domain protein [Sideroxydans lithotrophicus ES-1]
gi|291583116|gb|ADE10774.1| beta-lactamase domain protein [Sideroxydans lithotrophicus ES-1]
Length = 254
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 69/188 (36%), Gaps = 51/188 (27%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
VF+TH HLDHI LP+ V S G +P I E L + + + N E+ D
Sbjct: 49 VFVTHSHLDHIACLPLLVDSVGFMRDQPLVIHATD------ETLDILRQHVFNWEIWPDF 102
Query: 179 VALD-------------VGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
+ +GET +M + P +HV+P+ GY
Sbjct: 103 TEIPSLHQPILRYERIVLGETVDMGGR-KITPLPANHVVPAVGY---------------- 145
Query: 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEM 285
QI+ K S + FTGDTT+ L + LI E F + E
Sbjct: 146 ---QIDSGKTS------------LVFTGDTTTCDALWEEVNRIRNLEYLIVETAFSNAEK 190
Query: 286 SIEHAQQH 293
+ +H
Sbjct: 191 ELAVVSKH 198
>gi|149276254|ref|ZP_01882398.1| ribonuclease Z [Pedobacter sp. BAL39]
gi|149232774|gb|EDM38149.1| ribonuclease Z [Pedobacter sp. BAL39]
Length = 303
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIH 166
R +A + +++FI+H H DH GL +++ L +KP IF P + E +E F
Sbjct: 47 RYGIKASKIDYIFISHLHGDHYFGLIGLLSTMHLNGRIKPIYIFAPGPLMEILELQFRHS 106
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK 226
++ ++ + DV T D+ V +H IP G+ + +K+L+K
Sbjct: 107 ETVIRYDIEFVPLVADVSRTIFENQDVSVESIVLNHRIPCTGFK-FTEKKRLRKL----- 160
Query: 227 GKQIEKLKKSGVEIT 241
IEKL+ V I
Sbjct: 161 --MIEKLEAENVPIN 173
>gi|46360445|gb|AAS80153.1| ACT11D09.9 [Cucumis melo]
Length = 708
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN----LKPPTIFVPPSIKEDVEKLFEIHRSLGN--- 171
+ ITH HLDHIG LP + G YN + PT+ + P ED K+ R
Sbjct: 95 IIITHFHLDHIGALPYFTEICG-YNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQFT 153
Query: 172 ----VELNLDLVALDVGETYEMRNDIVVRPFKTHHVI 204
+E +V +D+ +T ++ D+ +R + HV+
Sbjct: 154 NDHIMECLKKVVPVDLKQTIQVDEDLQIRAYYAGHVL 190
>gi|229047834|ref|ZP_04193414.1| Ribonuclease Z [Bacillus cereus AH676]
gi|228723626|gb|EEL74991.1| Ribonuclease Z [Bacillus cereus AH676]
Length = 307
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E I S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSI--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + T N+ V + H I GY I
Sbjct: 117 VVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI 150
>gi|150398775|ref|YP_001322542.1| ribonuclease Z [Methanococcus vannielii SB]
gi|166991486|sp|A6UN58.1|RNZ_METVS RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|150011478|gb|ABR53930.1| ribonuclease Z [Methanococcus vannielii SB]
Length = 315
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 92/216 (42%), Gaps = 46/216 (21%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R I + N +FI+H H DHI G+P + S K P I+ PP
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFISHLHGDHILGIPGLLQSIAFQGRKKPLNIYGPPE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGE------TYEMRNDIVVRPFKTHHVIPSQG 208
KE ++ + +I + +N+ +++ E N+ V F H +PS
Sbjct: 93 TKEMIKNMLKIGYHSIDYPINIHEASIESPEMIIASSNNSNGNNYEVYTFPVKHSVPSIS 152
Query: 209 YVIYLLRKKLKKQYIHLK---------GKQIEKLK-------KSGVEIT--DIILSPE-- 248
Y L K++KK + +K G ++KLK K+G IT D+ + P+
Sbjct: 153 Y----LFKQIKKPQMDIKKAETLGIEIGPDLKKLKDGFSIQLKNGKVITPKDVTIPPKKG 208
Query: 249 --VAFTGDT--TSEFMLNPRNADALRAKILITEATF 280
+ ++GDT EF + +LI EATF
Sbjct: 209 YCIGYSGDTIPIDEF---GKFLKYHGCNVLIHEATF 241
>gi|15679819|ref|NP_276937.1| hypothetical protein MTH1831 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|41017519|sp|O27859.1|RNZ_METTH RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|2622965|gb|AAB86297.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 307
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 88/202 (43%), Gaps = 30/202 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI G+P + S G + P I+ PP I E L E +G L+ D
Sbjct: 57 IFITHLHGDHILGIPGMIQSMGFRGREEPLDIYGPPGIHE----LHECIMKMGYFTLDFD 112
Query: 178 LVALDV-GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKK--LKKQYIHLK---GKQIE 231
+ +V G T +D V H + + Y ++ L+++ I L G
Sbjct: 113 INVHEVRGGTVVEEDDYRVTSAPASHSVFNLAYCFEEKKRPRFLREKAIALGLKPGPAFG 172
Query: 232 KLKKS-GVEITDIILSPE-----------VAFTGDTT-SEFMLNPRNADALRAKILITEA 278
KL + V + D I+ PE V ++GDT E ++ A A++LI E+
Sbjct: 173 KLHRGIPVRVGDRIIMPEEVLGSPRKGVKVCYSGDTRPCESVIKL----AEGAELLIHES 228
Query: 279 TFLDDEMSIEHAQQHGHTHLSE 300
T + S + A + GH+ E
Sbjct: 229 TL--EAGSEDKAAESGHSTARE 248
>gi|423483388|ref|ZP_17460078.1| hypothetical protein IEQ_03166 [Bacillus cereus BAG6X1-2]
gi|401140939|gb|EJQ48494.1| hypothetical protein IEQ_03166 [Bacillus cereus BAG6X1-2]
Length = 556
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NSTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|424814535|ref|ZP_18239713.1| ribonuclease Z [Candidatus Nanosalina sp. J07AB43]
gi|339758151|gb|EGQ43408.1| ribonuclease Z [Candidatus Nanosalina sp. J07AB43]
Length = 302
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 31/212 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH GL + + + + P I+ PP +E + + + G + + D
Sbjct: 56 IFISHWHADHFSGLLGLIQTMEMEGREEPLYIYGPPRTEEFTDNILDT----GYFQRSFD 111
Query: 178 LVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIYLLRK-KLKKQYIHLKG----KQIE 231
+ ++ E E+ + ++PF+ H + + GYV +K K K + G ++
Sbjct: 112 IFVENIVEGEEIVGEGYQIKPFEVEHGVNAFGYVFEEEQKRKANKDKMEELGIGSSPKVG 171
Query: 232 KLKKS-GVEITDIILSPE----------VAFTGDTTS-EFMLNPRNADALRAKILITEAT 279
KLK+ +E +SPE + ++GDT+ E M+ A A +LI EAT
Sbjct: 172 KLKRGEEIEWEGERVSPEEVIQTVEGRKIVYSGDTSKCENMIKY----AEDADLLIHEAT 227
Query: 280 ----FLDDEMSIEHAQQHGHTHLSEDIRQAVL 307
+D A+Q G D+ + VL
Sbjct: 228 CRHKIIDQRNGHTSAKQAGKIAEKADVNKLVL 259
>gi|315658219|ref|ZP_07911091.1| ribonuclease Z [Staphylococcus lugdunensis M23590]
gi|418635257|ref|ZP_13197637.1| ribonuclease Z [Staphylococcus lugdunensis VCU139]
gi|315496548|gb|EFU84871.1| ribonuclease Z [Staphylococcus lugdunensis M23590]
gi|374842042|gb|EHS05493.1| ribonuclease Z [Staphylococcus lugdunensis VCU139]
Length = 307
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 43/240 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGESKPLTLVGPH 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
IK VE + S ++ + + +D G +Y N V +H I S GY +
Sbjct: 96 GIKAFVETTLSLSES--HLNYPITFIEIDDGFSYH-HNGFKVTAKVLNHGIVSYGYRVEA 152
Query: 214 LRKKLKKQYIHLK------GKQIEKLKKSGV-EITDIIL-----------SPEVAFTGDT 255
K LK G + +++K + E +II P +A GDT
Sbjct: 153 PTTPGKINVEALKALGLEPGPKYQEVKDNDTFEFNNIIYKSQDFKGLAKPGPIIAIFGDT 212
Query: 256 ---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSK 312
+E ++ A A+++I EAT+++ + + A + H+H+ +D+ Q + + K
Sbjct: 213 KPCANEKII------AQDAQLMIHEATYIEGDKVL--ANNYHHSHI-DDVFQLIHQAHVK 263
>gi|15639805|ref|NP_219255.1| ribonuclease Z [Treponema pallidum subsp. pallidum str. Nichols]
gi|189026043|ref|YP_001933815.1| ribonuclease Z [Treponema pallidum subsp. pallidum SS14]
gi|408502671|ref|YP_006870115.1| ribonuclease Z [Treponema pallidum subsp. pallidum str. Mexico A]
gi|41017518|sp|O07896.1|RNZ_TREPA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808682|sp|B2S457.1|RNZ_TREPS RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|2196998|gb|AAB61269.1| Orf310 [Treponema pallidum]
gi|3323126|gb|AAC65782.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018618|gb|ACD71236.1| hypothetical protein TPASS_0819 [Treponema pallidum subsp. pallidum
SS14]
gi|408476034|gb|AFU66799.1| ribonuclease Z [Treponema pallidum subsp. pallidum str. Mexico A]
Length = 310
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIH 166
R R + + +FI+H H DHI GLP + + S + +P I PP E V E
Sbjct: 49 RLSLRWKKISAIFISHTHADHITGLPGLLMLSSQVARSEPLYIIGPPRTAEYV----ETS 104
Query: 167 RSLGNVELNLDLVALDVGE---TYEMRNDIVVRPFKTHHVIPSQGYVI 211
R + ++ +N +++ +V E Y + D VR F H P GY +
Sbjct: 105 RRILDMYINYEIIVKEVIEPQVVYRGK-DFQVRCFCLDHTKPCMGYTL 151
>gi|404371511|ref|ZP_10976815.1| ribonuclease Z [Clostridium sp. 7_2_43FAA]
gi|404301370|gb|EEH97562.2| ribonuclease Z [Clostridium sp. 7_2_43FAA]
Length = 316
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 87/211 (41%), Gaps = 33/211 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLK-PPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+ + ITH H DHI GLP +++ G + P TI P I V L I L +LN
Sbjct: 58 DLILITHCHGDHIVGLPGLLSTIGNSGREHPLTIIGPIGITNVVNSLRVIAPYLP-YDLN 116
Query: 176 L-------------DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL---- 218
+ DL+ LD + ++D++VR + H P GY Y RK+
Sbjct: 117 IIENPNELYFNVKKDLIELDTND----KSDLIVRTLELEHSSPCLGYNFYFKRKRKFDID 172
Query: 219 KKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTS----EFMLNPRNADAL----- 269
K ++ KL+K I D I G+ F+ + R +++
Sbjct: 173 KAIKSNVPKMLWNKLQKEEEVIYDGIQYDYTMVLGEERKGIKVSFITDTRPINSIVRFIE 232
Query: 270 RAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
+ + I E T+ DD+ IE A ++ H E
Sbjct: 233 NSDLFICEGTYGDDK-DIEKAIKNKHMTFRE 262
>gi|407452811|ref|YP_006724536.1| hypothetical protein B739_2054 [Riemerella anatipestifer RA-CH-1]
gi|403313795|gb|AFR36636.1| hypothetical protein B739_2054 [Riemerella anatipestifer RA-CH-1]
Length = 304
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 29/211 (13%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIH 166
R + + N +FI+H H DH GLP +AS L + P I+ P I+E +E +F I
Sbjct: 47 RAKAKFSKINHIFISHLHGDHCFGLPGLIASFRLLGRETPLHIYGPKGIQEMLETIFRIT 106
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT--HHVIPSQGYVIYLLRKKLKKQYIH 224
+ E+ L+ ++ ++ D V F +H I G YL R+K K+++++
Sbjct: 107 ETQRGFEVIYH--ELEGNQSVKIYEDHKVEVFTIPLNHRIYCNG---YLFREKPKERHLN 161
Query: 225 L----KGKQIEKLK----KSGVEIT---DIILSPEVAFT---GDTTSEFMLNPRNADAL- 269
+ K +IE K G + T +L EV T + F + R +++
Sbjct: 162 MEEISKYPEIETCDYHNLKKGKDFTLSDGFVLKNEVLTTPPQPSVSYAFCSDTRYLESIV 221
Query: 270 ----RAKILITEATFLDDEMSIEHAQQHGHT 296
+L EATFL D E A GHT
Sbjct: 222 PIIKGVDVLYHEATFLHDLK--EMADYTGHT 250
>gi|423612015|ref|ZP_17587876.1| hypothetical protein IIM_02730 [Bacillus cereus VD107]
gi|401247022|gb|EJR53366.1| hypothetical protein IIM_02730 [Bacillus cereus VD107]
Length = 556
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NSTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|418321650|ref|ZP_12932989.1| putative ribonuclease Z [Staphylococcus aureus subsp. aureus
VCU006]
gi|365224265|gb|EHM65530.1| putative ribonuclease Z [Staphylococcus aureus subsp. aureus
VCU006]
Length = 177
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Query: 104 FDIGRCPTRAIQQN--------FVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGY 209
IK VE + S LN + +++ + +D V +H IPS GY
Sbjct: 96 GIKAYVEMSMNLSES----HLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGY 148
>gi|205373950|ref|ZP_03226751.1| ribonuclease Z [Bacillus coahuilensis m4-4]
Length = 312
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 88/197 (44%), Gaps = 37/197 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P T++ P IKE + +I L
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGESPVTVYGPRGIKEYILTSLKI----SGTYLKYP 114
Query: 178 LVALDVGETYEMRNDIVVRPFKT--HHVIPSQGYVI-------YLLRKKLKKQYIHLKGK 228
L L++ E+ + D R H +PS G+ I LL +KL+ I KG
Sbjct: 115 LHILEIEESGIIFEDDQFRVITALLEHGLPSYGFRIEEKDRPGELLVEKLESLGIP-KGP 173
Query: 229 QIEKLKK-SGVEITD-------IILSPE-----VAFTGDT--TSEFMLNPRNADALRAKI 273
Q KLK +E++D + P+ V GDT ++ R+AD +
Sbjct: 174 QYRKLKALESIELSDGRIVHGIDVTGPKKQGRIVTILGDTRPCENALMLSRHAD-----V 228
Query: 274 LITEATFL--DDEMSIE 288
L+ EATF ++EM+ E
Sbjct: 229 LVHEATFSTGNEEMAKE 245
>gi|433624655|ref|YP_007258285.1| Putative uncharacterized protein [Mycoplasma cynos C142]
gi|429534681|emb|CCP24183.1| Putative uncharacterized protein [Mycoplasma cynos C142]
Length = 630
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +Y+ + N IF P + ++ FE H N++ ++
Sbjct: 70 LFITHGHEDHIGGV-VYLVKKTKLN----KIFAPRIAIQYLQLKFEEH----NIKRKIEF 120
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPS 206
+ + + Y+ N+ V + H IP
Sbjct: 121 IEIQKNDVYKFENNCKVDFWTVQHSIPD 148
>gi|336251333|ref|YP_004595043.1| ribonuclease Z [Enterobacter aerogenes KCTC 2190]
gi|334737389|gb|AEG99764.1| ribonuclease Z [Enterobacter aerogenes KCTC 2190]
Length = 306
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P IKE +E + S + L
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTVYGPKGIKEFIETALRLSGSWTDYPLT 117
Query: 176 LDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVI 211
+ ++VG D V + H + GY I
Sbjct: 118 I----IEVGPGLVFDEDGYRVSAYPLSHPVECYGYRI 150
>gi|333910570|ref|YP_004484303.1| beta-lactamase domain-containing protein [Methanotorris igneus Kol
5]
gi|333751159|gb|AEF96238.1| beta-lactamase domain protein [Methanotorris igneus Kol 5]
Length = 419
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 72/190 (37%), Gaps = 47/190 (24%)
Query: 100 LKCAFDIGRCPTRAIQQNF--VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKE 157
L C D + +N V ++H HLDH G +P Y + +Y P + + K+
Sbjct: 29 LDCGMDPTNNAIPKVDENVDAVIVSHAHLDHCGAIPFY-KFKKIYCTTPTADLMYITWKD 87
Query: 158 DVE-----KLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY 212
+ K +I RSL N E L+ E ++ DI ++ + H++ S
Sbjct: 88 TLNLSKSYKEEDIQRSLNNTE------TLNYKEEKQITEDITLKFYNAGHILGSASI--- 138
Query: 213 LLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT--TSEFMLNPRNADALR 270
Y+ + GK+I +TGD T L P + D
Sbjct: 139 ---------YLDIDGKKI-------------------LYTGDINETPTRTLLPADTDVDE 170
Query: 271 AKILITEATF 280
+LI E+T+
Sbjct: 171 IDVLIIESTY 180
>gi|444350343|ref|YP_007386487.1| Ribonuclease Z (EC 3.1.26.11) [Enterobacter aerogenes EA1509E]
gi|443901173|emb|CCG28947.1| Ribonuclease Z (EC 3.1.26.11) [Enterobacter aerogenes EA1509E]
Length = 306
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P IKE +E + S + L
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTVYGPKGIKEFIETALRLSGSWTDYPLT 117
Query: 176 LDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVI 211
+ ++VG D V + H + GY I
Sbjct: 118 I----IEVGPGLVFDEDGYRVSAYPLSHPVECYGYRI 150
>gi|389571762|ref|ZP_10161851.1| ribonuclease Z [Bacillus sp. M 2-6]
gi|388428656|gb|EIL86452.1| ribonuclease Z [Bacillus sp. M 2-6]
Length = 309
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 30/208 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK V ++ ++ L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGENELTIYGPSGIKAFVNATLSATQT--HLTYPLH 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK-------QYI 223
++ ++ G +E V + H IP+ GY + L + LKK Y
Sbjct: 117 IIEIEEGIVFE-DETFQVEARRVAHGIPAYGYRVVEKDVPGALKAEDLKKIGVKPGPLYQ 175
Query: 224 HLKGKQIEKLKKSG-VEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
LK + L+ ++ T+ + P+ VAF+GDT +NAD +L+
Sbjct: 176 KLKNGETVTLEDGRMIDGTNYLEPPKKGRIVAFSGDTRLCENITRLAKNAD-----VLVH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEDIRQ 304
EATF ++ + + H T + Q
Sbjct: 231 EATFGKEDAELAYNYYHSTTEQAAKTAQ 258
>gi|327405262|ref|YP_004346100.1| Ribonuclease Z [Fluviicola taffensis DSM 16823]
gi|327320770|gb|AEA45262.1| Ribonuclease Z [Fluviicola taffensis DSM 16823]
Length = 303
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 32/207 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N + I+H H DH GL +++S L K TI+ P E++E++ + +G L
Sbjct: 56 NHILISHLHGDHFFGLVGFLSSMHLLGRDKGLTIYGP----EELEQIIRLQLEVGGARLG 111
Query: 176 --LDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHLKGKQ 229
L+ VAL+ E + D I + F H IP+ G++I +KL + G
Sbjct: 112 FELNFVALNGKENRLLFEDKIIEIWTFPLSHRIPTNGFLIKEKPRDRKLNAELFEEAGLS 171
Query: 230 ---IEKLKKSGVEITDIILSPEVAFTGDTT------------SEFMLNPRNADALR-AKI 273
I KLK+ G+++ + S EV + + T S+ + + R ++ +
Sbjct: 172 LTLIPKLKQ-GIDVE--LDSGEVIYADEYTYPAKPSRSYGYCSDTIYDERIVAYVKHVNL 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSE 300
L EATFLDD++ + A+Q H+ S+
Sbjct: 229 LYHEATFLDDKL--DRAKQTFHSTASQ 253
>gi|229098267|ref|ZP_04229214.1| Zn-dependent hydrolase [Bacillus cereus Rock3-29]
gi|229104360|ref|ZP_04235029.1| Zn-dependent hydrolase [Bacillus cereus Rock3-28]
gi|229117284|ref|ZP_04246662.1| Zn-dependent hydrolase [Bacillus cereus Rock1-3]
gi|407706203|ref|YP_006829788.1| 3-oxoacyl-ACP reductase [Bacillus thuringiensis MC28]
gi|423378416|ref|ZP_17355700.1| hypothetical protein IC9_01769 [Bacillus cereus BAG1O-2]
gi|423441471|ref|ZP_17418377.1| hypothetical protein IEA_01801 [Bacillus cereus BAG4X2-1]
gi|423448303|ref|ZP_17425182.1| hypothetical protein IEC_02911 [Bacillus cereus BAG5O-1]
gi|423464545|ref|ZP_17441313.1| hypothetical protein IEK_01732 [Bacillus cereus BAG6O-1]
gi|423533887|ref|ZP_17510305.1| hypothetical protein IGI_01719 [Bacillus cereus HuB2-9]
gi|423540844|ref|ZP_17517235.1| hypothetical protein IGK_02936 [Bacillus cereus HuB4-10]
gi|423547082|ref|ZP_17523440.1| hypothetical protein IGO_03517 [Bacillus cereus HuB5-5]
gi|423623126|ref|ZP_17598904.1| hypothetical protein IK3_01724 [Bacillus cereus VD148]
gi|228666184|gb|EEL21648.1| Zn-dependent hydrolase [Bacillus cereus Rock1-3]
gi|228679058|gb|EEL33266.1| Zn-dependent hydrolase [Bacillus cereus Rock3-28]
gi|228685165|gb|EEL39096.1| Zn-dependent hydrolase [Bacillus cereus Rock3-29]
gi|401128897|gb|EJQ36580.1| hypothetical protein IEC_02911 [Bacillus cereus BAG5O-1]
gi|401172032|gb|EJQ79253.1| hypothetical protein IGK_02936 [Bacillus cereus HuB4-10]
gi|401178803|gb|EJQ85976.1| hypothetical protein IGO_03517 [Bacillus cereus HuB5-5]
gi|401259899|gb|EJR66073.1| hypothetical protein IK3_01724 [Bacillus cereus VD148]
gi|401635183|gb|EJS52939.1| hypothetical protein IC9_01769 [Bacillus cereus BAG1O-2]
gi|402418132|gb|EJV50432.1| hypothetical protein IEA_01801 [Bacillus cereus BAG4X2-1]
gi|402420812|gb|EJV53083.1| hypothetical protein IEK_01732 [Bacillus cereus BAG6O-1]
gi|402464106|gb|EJV95806.1| hypothetical protein IGI_01719 [Bacillus cereus HuB2-9]
gi|407383888|gb|AFU14389.1| Zn-dependent hydrolase [Bacillus thuringiensis MC28]
Length = 556
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNNGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|409200642|ref|ZP_11228845.1| ribonuclease Z [Pseudoalteromonas flavipulchra JG1]
Length = 299
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 23/127 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ ITH H DH GLP ++S L + K P + P ++ + V+ F +L V L+ D
Sbjct: 40 ICITHLHGDHCYGLPGLISSMALNSRKAPLKLIAPRAVIQFVQSCF----TLTEVRLSFD 95
Query: 178 LVALDVGETYEMRNDIV------VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE 231
L+ + + E ND + + H +PS GY KL ++ I K K I+
Sbjct: 96 LITIALEEI----NDKLQLECCDIETIALQHRVPSVGY-------KLTEKCIPRKLK-ID 143
Query: 232 KLKKSGV 238
KL++ G+
Sbjct: 144 KLQQDGI 150
>gi|378973332|ref|YP_005221938.1| ribonuclease Z [Treponema pallidum subsp. pertenue str. SamoaD]
gi|378974399|ref|YP_005223007.1| ribonuclease Z [Treponema pallidum subsp. pertenue str. Gauthier]
gi|378975457|ref|YP_005224067.1| ribonuclease Z [Treponema pallidum subsp. pallidum DAL-1]
gi|378982308|ref|YP_005230615.1| ribonuclease Z [Treponema pallidum subsp. pertenue str. CDC2]
gi|384422308|ref|YP_005631667.1| ribonuclease Z [Treponema pallidum subsp. pallidum str. Chicago]
gi|291060174|gb|ADD72909.1| ribonuclease Z [Treponema pallidum subsp. pallidum str. Chicago]
gi|374677657|gb|AEZ57950.1| ribonuclease Z [Treponema pallidum subsp. pertenue str. SamoaD]
gi|374678727|gb|AEZ59019.1| ribonuclease Z [Treponema pallidum subsp. pertenue str. CDC2]
gi|374679796|gb|AEZ60087.1| ribonuclease Z [Treponema pallidum subsp. pertenue str. Gauthier]
gi|374680857|gb|AEZ61147.1| ribonuclease Z [Treponema pallidum subsp. pallidum DAL-1]
Length = 308
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 119 VFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP + + S + +P I PP E V E R + ++ +N +
Sbjct: 58 IFISHTHADHITGLPGLLMLSSQVARSEPLYIIGPPRTAEYV----ETSRRILDMYINYE 113
Query: 178 LVALDVGE---TYEMRNDIVVRPFKTHHVIPSQGYVI 211
++ +V E Y + D VR F H P GY +
Sbjct: 114 IIVKEVIEPQVVYRGK-DFQVRCFCLDHTKPCMGYTL 149
>gi|255018251|ref|ZP_05290377.1| hypothetical protein LmonF_12051 [Listeria monocytogenes FSL
F2-515]
Length = 262
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 88/204 (43%), Gaps = 38/204 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR G NL TI+ P I E VE + + ++
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSNL---TIYGPAGIAEYVETSLRLSGTRLTYKI 115
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIH--- 224
N + ++ G +E + IV H + S GY I L +KLK +
Sbjct: 116 NFE--EIEPGVIFEDKMFIVTAD-DLDHGVRSFGYRIVEKDKQGALNAEKLKADGVEAGP 172
Query: 225 ----LKGKQIEKLKKSGV-EITDIILSPE----VAFTGD---TTSEFMLNPRNADALRAK 272
LK +I L V + + I P+ ++ GD T+SE L AL A
Sbjct: 173 VFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTRETSSELEL------ALNAD 226
Query: 273 ILITEATFLDDEMSIEHAQQHGHT 296
IL+ EATF D+ + H T
Sbjct: 227 ILVHEATFEGDKAKMAGEYMHSTT 250
>gi|448664433|ref|ZP_21684236.1| ribonuclease Z [Haloarcula amylolytica JCM 13557]
gi|445775078|gb|EMA26092.1| ribonuclease Z [Haloarcula amylolytica JCM 13557]
Length = 311
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 97/231 (41%), Gaps = 35/231 (15%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + +P + P
Sbjct: 35 FDCGEGTQRQMMRYGTGFAIDHLFVTHLHGDHVLGIPGLLQTWDFNERERPIAVHTPAGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ ++++L + + + + + ++ V+ G+ R + +R +T H S GYV+
Sbjct: 95 RGNIKQLIQANGTTPSFPVRINEVS--AGDVVLDRPEYEIRAIETAHRCASVGYVLDEDD 152
Query: 212 ---YLLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPEV-----------AFTGDTT 256
R+K ++++ G + KL + VE + PE +TGDT
Sbjct: 153 RKGKFDREKAEEKFGIPPGPKYSKLHRGEPVEHEGETIQPEAVVGPPRPGRRFVYTGDTL 212
Query: 257 -SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-RQA 305
E ++ A +L+ +ATF +D A H + D+ RQA
Sbjct: 213 PKESVIEASEG----ADLLVHDATFAEDRKERAKATAHSTAREAADVARQA 259
>gi|389852371|ref|YP_006354605.1| ribonuclease Z [Pyrococcus sp. ST04]
gi|388249677|gb|AFK22530.1| Ribonuclease Z [Pyrococcus sp. ST04]
Length = 305
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 34/189 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L++ K P I+ PP V+ L L ++ ++
Sbjct: 57 IFITHFHGDHYIGLLSLIQTMNLWDRKEPLEIYGPPGAVTFVKNLLRTGYFLPTFKIIIN 116
Query: 178 LVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK---------G 227
+V E ++N + V PF+ H +P+ GYV +++ K+ L+ G
Sbjct: 117 ----EVWEGDVIKNKEYKVVPFEVSHGVPALGYV---FKERDKRGNFDLEKIKRLGLSPG 169
Query: 228 KQIEKLKKSG-VEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALRAKILI 275
+++L+K G +EI+ I + E + +TGD T L D +LI
Sbjct: 170 PWMKELEKRGKIEISGIEIRLEDVTGPKKRGAKIVYTGD-TEPITLGDLCKD---CDMLI 225
Query: 276 TEATFLDDE 284
EAT++ E
Sbjct: 226 HEATYISPE 234
>gi|335429726|ref|ZP_08556624.1| essential RNase J1/J2, metallo-beta-lactamase superfamily protein
YkqC [Haloplasma contractile SSD-17B]
gi|334889736|gb|EGM28021.1| essential RNase J1/J2, metallo-beta-lactamase superfamily protein
YkqC [Haloplasma contractile SSD-17B]
Length = 564
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+P L LK P I+ + ++K E HR E +
Sbjct: 74 LFITHGHEDHIGGIPFL-----LKQLKIPKIYAGRLAEGLIKKKLEEHRLTKASE----I 124
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP 205
V D + Y + + + F+T+H IP
Sbjct: 125 VIFDDNDIYTFEH-MSISFFRTNHSIP 150
>gi|218438169|ref|YP_002376498.1| ribonuclease Z [Cyanothece sp. PCC 7424]
gi|254808627|sp|B7K762.1|RNZ_CYAP7 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|218170897|gb|ACK69630.1| ribonuclease Z [Cyanothece sp. PCC 7424]
Length = 318
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD G R + Q +FITH H DHI GL +AS GL N +P ++ PP
Sbjct: 35 FDCGEGTQHQLLRSDIKTSQLRRIFITHLHGDHIFGLMGLLASCGLAGNAQPVDLYGPPG 94
Query: 155 IKEDVEKLFEI-HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+K+ ++ + H GN + + ++ G YE + V H IP+ GY I
Sbjct: 95 LKDYIQACSKYSHTHFGN---RVQVYTVEPGLVYE-DEEFTVTCDLLKHRIPAFGYRI 148
>gi|386044285|ref|YP_005963090.1| ribonuclease Z [Listeria monocytogenes 10403S]
gi|404411278|ref|YP_006696866.1| ribonuclease Z [Listeria monocytogenes SLCC5850]
gi|345537519|gb|AEO06959.1| ribonuclease Z [Listeria monocytogenes 10403S]
gi|404231104|emb|CBY52508.1| ribonuclease Z [Listeria monocytogenes SLCC5850]
Length = 306
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 87/204 (42%), Gaps = 38/204 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR G NL TI+ P I E VE + + ++
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSNL---TIYGPAGIAEYVETSLRLSGTRLTYKI 115
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIH--- 224
N + +D G +E +V H + S GY I L +KLK +
Sbjct: 116 NFE--EIDPGVIFE-DEMFLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVEAGP 172
Query: 225 ----LKGKQIEKLKKSGV-EITDIILSPE----VAFTGD---TTSEFMLNPRNADALRAK 272
LK +I L V + + I P+ ++ GD T+SE L AL A
Sbjct: 173 VFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTRETSSELEL------ALNAD 226
Query: 273 ILITEATFLDDEMSIEHAQQHGHT 296
IL+ EATF D+ + H T
Sbjct: 227 ILVHEATFEGDKAKMAGEYMHSTT 250
>gi|423395556|ref|ZP_17372757.1| ribonuclease Z [Bacillus cereus BAG2X1-1]
gi|401654967|gb|EJS72506.1| ribonuclease Z [Bacillus cereus BAG2X1-1]
Length = 305
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + T N+ V + H I GY I
Sbjct: 117 IVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI 150
>gi|435851770|ref|YP_007313356.1| putative hydrolase of the metallo-beta-lactamase superfamily
[Methanomethylovorans hollandica DSM 15978]
gi|433662400|gb|AGB49826.1| putative hydrolase of the metallo-beta-lactamase superfamily
[Methanomethylovorans hollandica DSM 15978]
Length = 447
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 30/154 (19%)
Query: 104 FDIGRCPTRAIQQNF------VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPS--- 154
++G P I ++ + THGHLDHIG +P + P I P +
Sbjct: 57 INMGAIPDDTIMKDVNGNVRAIVCTHGHLDHIGAIPKLA-----HRYSAPIISTPYTTAL 111
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPS-------- 206
IK ++ R G + +L+++ GETYE+ D+ V T H I
Sbjct: 112 IKHQIDS----ERKFG---VKNNLISMKAGETYEITKDVSVEFINTQHSIIDTVFAVIHT 164
Query: 207 -QGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVE 239
+G ++Y KL + + +LK G E
Sbjct: 165 PKGAIMYACDFKLDRTPTLGEAPDFNRLKSLGEE 198
>gi|423615941|ref|ZP_17591775.1| hypothetical protein IIO_01267 [Bacillus cereus VD115]
gi|401260478|gb|EJR66651.1| hypothetical protein IIO_01267 [Bacillus cereus VD115]
Length = 556
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNNGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|386054232|ref|YP_005971790.1| ribonuclease Z [Listeria monocytogenes Finland 1998]
gi|346646883|gb|AEO39508.1| ribonuclease Z [Listeria monocytogenes Finland 1998]
Length = 306
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 87/204 (42%), Gaps = 38/204 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR G NL TI+ P I E VE + + ++
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSNL---TIYGPAGIAEYVETSLRLSGTRLTYKI 115
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIH--- 224
N + +D G +E +V H + S GY I L +KLK +
Sbjct: 116 NFE--EIDPGVIFEDEM-FLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVEAGP 172
Query: 225 ----LKGKQIEKLKKSGV-EITDIILSPE----VAFTGD---TTSEFMLNPRNADALRAK 272
LK +I L V + + I P+ ++ GD T+SE L AL A
Sbjct: 173 VFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKVISIFGDTRETSSELEL------ALNAD 226
Query: 273 ILITEATFLDDEMSIEHAQQHGHT 296
IL+ EATF D+ + H T
Sbjct: 227 ILVHEATFEGDKAKMAGEYMHSTT 250
>gi|433637536|ref|YP_007283296.1| ribonuclease Z [Halovivax ruber XH-70]
gi|433289340|gb|AGB15163.1| ribonuclease Z [Halovivax ruber XH-70]
Length = 311
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 55/252 (21%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + + + I VP
Sbjct: 35 FDAGEGTQRQLMRYGTGFDISELFVTHVHGDHVLGIPGLLQTMDFNDRERKLRIHVPRGT 94
Query: 156 KEDVEKL-FEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ V +L F + ++ +++ +D G+ ++ VR F+T H S GY L+
Sbjct: 95 RRQVRELAFSLD---AHISFPVEIADVDDGDVVSRGDEYEVRAFRTDHDTRSVGYA--LV 149
Query: 215 RKKLKKQYIHLK--------GKQIEKLKKSG-VEITD-IILSPE-----------VAFTG 253
+ K ++ + G + +L + VE+ D ++ PE + +TG
Sbjct: 150 EDERKGRFDRERAEELGVPVGPKFSQLHEGEPVELDDGTVVRPEQVVGEPRPGRSLVYTG 209
Query: 254 DT-----TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLK 308
DT T E P +LI +ATF DD E A H+ RQA +
Sbjct: 210 DTRPTARTVEIADEP--------DLLIHDATFADDRA--ERAADTAHST----ARQAA-E 254
Query: 309 LQSKVSAKVVPL 320
+ ++ SAK + L
Sbjct: 255 IANRASAKRLAL 266
>gi|431926503|ref|YP_007239537.1| beta-lactamase superfamily metal-dependent hydrolase [Pseudomonas
stutzeri RCH2]
gi|431824790|gb|AGA85907.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Pseudomonas stutzeri RCH2]
Length = 330
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ ITH H DH GLP +AS G+ K TI P I+ V ++ +S EL+
Sbjct: 58 ICITHVHGDHCYGLPGLLASAGMMGRKATLTIIAPQGIETWVRTTLDMSQSWLGYELDFR 117
Query: 178 LV-ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
V +LD + MR + H +P GY R + IE+L++
Sbjct: 118 AVESLDEWRSPNMR----IEATALSHRVPCYGYSFTEARPDPR--------LDIERLERD 165
Query: 237 GV 238
GV
Sbjct: 166 GV 167
>gi|418951515|ref|ZP_13503601.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-160]
gi|375372488|gb|EHS76226.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-160]
Length = 306
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVI 211
IK V E+ +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYV----EMSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRV 150
>gi|385815521|ref|YP_005851912.1| putative metallo-beta-lactamase superfamily [Lactobacillus
delbrueckii subsp. bulgaricus 2038]
gi|325125558|gb|ADY84888.1| putative metallo-beta-lactamase superfamily [Lactobacillus
delbrueckii subsp. bulgaricus 2038]
Length = 309
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 21/180 (11%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++R ++ P TI+ P I++ V+ I ++ + +
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGIEQFVKTSLRISKT--KISYPIK 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
V L+ G V K H I S G+ I LL KL ++ G +
Sbjct: 117 FVTLEEGGKIVSERGFEVYTEKLDHRIDSWGFRIVEADKAGELLMDKL-AEFKVPNGPLL 175
Query: 231 EKLKKS-GVEITDIILSPEVAFTGDTTS----EFMLNPRNADALR-----AKILITEATF 280
KLK+ VE+ D + F G + + R+ ++R A +L+ EATF
Sbjct: 176 GKLKRGEQVELADGTVLNGKDFLGPAKKGRVVTVIYDTRSTPSIRRLADHADVLVHEATF 235
>gi|339488337|ref|YP_004702865.1| ribonuclease Z [Pseudomonas putida S16]
gi|338839180|gb|AEJ13985.1| ribonuclease Z [Pseudomonas putida S16]
Length = 319
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH H DH GLP +AS G+ P V P+ D + + + L +L
Sbjct: 58 IFITHVHGDHCFGLPGLLASAGMSGRTQPLDLVLPAALHDWVRQGLV---ASDTFLPFEL 114
Query: 179 VALDVGETYEMRNDIV-VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEK 232
L V E E R+D + V + H +PS G+V L + + L+ + I +
Sbjct: 115 RLLAVEELVEWRSDALEVTSVQLSHRVPSVGFVFTELNPEPRLNIPRLEAEGIPR 169
>gi|47096621|ref|ZP_00234209.1| metallo-beta-lactamase family protein [Listeria monocytogenes str.
1/2a F6854]
gi|254912536|ref|ZP_05262548.1| metallo-beta-lactamase family protein [Listeria monocytogenes
J2818]
gi|254936863|ref|ZP_05268560.1| metallo-beta-lactamase [Listeria monocytogenes F6900]
gi|284802422|ref|YP_003414287.1| hypothetical protein LM5578_2178 [Listeria monocytogenes 08-5578]
gi|284995564|ref|YP_003417332.1| hypothetical protein LM5923_2129 [Listeria monocytogenes 08-5923]
gi|386047629|ref|YP_005965961.1| ribonuclease Z [Listeria monocytogenes J0161]
gi|404414055|ref|YP_006699642.1| ribonuclease Z [Listeria monocytogenes SLCC7179]
gi|47015006|gb|EAL05951.1| metallo-beta-lactamase family protein [Listeria monocytogenes
serotype 1/2a str. F6854]
gi|258609458|gb|EEW22066.1| metallo-beta-lactamase [Listeria monocytogenes F6900]
gi|284057984|gb|ADB68925.1| hypothetical protein LM5578_2178 [Listeria monocytogenes 08-5578]
gi|284061031|gb|ADB71970.1| hypothetical protein LM5923_2129 [Listeria monocytogenes 08-5923]
gi|293590521|gb|EFF98855.1| metallo-beta-lactamase family protein [Listeria monocytogenes
J2818]
gi|345534620|gb|AEO04061.1| ribonuclease Z [Listeria monocytogenes J0161]
gi|404239754|emb|CBY61155.1| ribonuclease Z [Listeria monocytogenes SLCC7179]
gi|441471759|emb|CCQ21514.1| Ribonuclease Z [Listeria monocytogenes]
gi|441474892|emb|CCQ24646.1| Ribonuclease Z [Listeria monocytogenes N53-1]
Length = 306
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 87/204 (42%), Gaps = 38/204 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR G NL TI+ P I E VE + + ++
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSNL---TIYGPAGIAEYVETSLRLSGTRLTYKI 115
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIH--- 224
N + +D G +E +V H + S GY I L +KLK +
Sbjct: 116 NFE--EIDPGVIFE-DEMFLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVEAGP 172
Query: 225 ----LKGKQIEKLKKSGV-EITDIILSPE----VAFTGD---TTSEFMLNPRNADALRAK 272
LK +I L V + + I P+ ++ GD T+SE L AL A
Sbjct: 173 VFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTRETSSELEL------ALNAD 226
Query: 273 ILITEATFLDDEMSIEHAQQHGHT 296
IL+ EATF D+ + H T
Sbjct: 227 ILVHEATFEGDKAKMAGEYMHSTT 250
>gi|288934267|ref|YP_003438326.1| ribonuclease Z [Klebsiella variicola At-22]
gi|288888996|gb|ADC57314.1| ribonuclease Z [Klebsiella variicola At-22]
Length = 306
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD G R P + N +FITH H DH+ GLP + SR + N P T++ P
Sbjct: 37 FDCGEGTQHQFLRTPYHPGKLNKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKG 96
Query: 155 IKEDVEKLFEIHRSLGNVELNL 176
+KE VE + S + L +
Sbjct: 97 LKEFVETALRLSGSWTDYPLTI 118
>gi|218234241|ref|YP_002368599.1| metallo-beta-lactamase [Bacillus cereus B4264]
gi|218162198|gb|ACK62190.1| metallo-beta-lactamase family protein [Bacillus cereus B4264]
Length = 556
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|416898337|ref|ZP_11927901.1| ribonuclease Z [Escherichia coli STEC_7v]
gi|422780812|ref|ZP_16833597.1| ribonuclease BN [Escherichia coli TW10509]
gi|422799577|ref|ZP_16848076.1| ribonuclease BN [Escherichia coli M863]
gi|323967712|gb|EGB63124.1| ribonuclease BN [Escherichia coli M863]
gi|323977530|gb|EGB72616.1| ribonuclease BN [Escherichia coli TW10509]
gi|327252541|gb|EGE64200.1| ribonuclease Z [Escherichia coli STEC_7v]
Length = 305
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P ++E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGLREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 150
>gi|229146368|ref|ZP_04274739.1| Zn-dependent hydrolase [Bacillus cereus BDRD-ST24]
gi|228637001|gb|EEK93460.1| Zn-dependent hydrolase [Bacillus cereus BDRD-ST24]
Length = 556
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|206972632|ref|ZP_03233574.1| metallo-beta-lactamase family protein [Bacillus cereus AH1134]
gi|228954074|ref|ZP_04116103.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|229047483|ref|ZP_04193073.1| Zn-dependent hydrolase [Bacillus cereus AH676]
gi|229071296|ref|ZP_04204519.1| Zn-dependent hydrolase [Bacillus cereus F65185]
gi|229111269|ref|ZP_04240822.1| Zn-dependent hydrolase [Bacillus cereus Rock1-15]
gi|229129073|ref|ZP_04258046.1| Zn-dependent hydrolase [Bacillus cereus BDRD-Cer4]
gi|229191922|ref|ZP_04318892.1| Zn-dependent hydrolase [Bacillus cereus ATCC 10876]
gi|296504294|ref|YP_003665994.1| Zn-dependent hydrolase [Bacillus thuringiensis BMB171]
gi|365159425|ref|ZP_09355606.1| hypothetical protein HMPREF1014_01069 [Bacillus sp. 7_6_55CFAA_CT2]
gi|423412397|ref|ZP_17389517.1| hypothetical protein IE1_01701 [Bacillus cereus BAG3O-2]
gi|423425934|ref|ZP_17402965.1| hypothetical protein IE5_03623 [Bacillus cereus BAG3X2-2]
gi|423431818|ref|ZP_17408822.1| hypothetical protein IE7_03634 [Bacillus cereus BAG4O-1]
gi|423503525|ref|ZP_17480117.1| hypothetical protein IG1_01091 [Bacillus cereus HD73]
gi|423582008|ref|ZP_17558119.1| hypothetical protein IIA_03523 [Bacillus cereus VD014]
gi|423585793|ref|ZP_17561880.1| hypothetical protein IIE_01205 [Bacillus cereus VD045]
gi|423641121|ref|ZP_17616739.1| hypothetical protein IK9_01066 [Bacillus cereus VD166]
gi|423649661|ref|ZP_17625231.1| hypothetical protein IKA_03448 [Bacillus cereus VD169]
gi|423656657|ref|ZP_17631956.1| hypothetical protein IKG_03645 [Bacillus cereus VD200]
gi|449090740|ref|YP_007423181.1| metallo-beta-lactamase family protein [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|206732445|gb|EDZ49625.1| metallo-beta-lactamase family protein [Bacillus cereus AH1134]
gi|228591473|gb|EEK49322.1| Zn-dependent hydrolase [Bacillus cereus ATCC 10876]
gi|228654310|gb|EEL10175.1| Zn-dependent hydrolase [Bacillus cereus BDRD-Cer4]
gi|228672045|gb|EEL27336.1| Zn-dependent hydrolase [Bacillus cereus Rock1-15]
gi|228711750|gb|EEL63702.1| Zn-dependent hydrolase [Bacillus cereus F65185]
gi|228723730|gb|EEL75085.1| Zn-dependent hydrolase [Bacillus cereus AH676]
gi|228805640|gb|EEM52230.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|296325346|gb|ADH08274.1| Zn-dependent hydrolase [Bacillus thuringiensis BMB171]
gi|363625423|gb|EHL76464.1| hypothetical protein HMPREF1014_01069 [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104465|gb|EJQ12442.1| hypothetical protein IE1_01701 [Bacillus cereus BAG3O-2]
gi|401110681|gb|EJQ18580.1| hypothetical protein IE5_03623 [Bacillus cereus BAG3X2-2]
gi|401116574|gb|EJQ24412.1| hypothetical protein IE7_03634 [Bacillus cereus BAG4O-1]
gi|401212887|gb|EJR19628.1| hypothetical protein IIA_03523 [Bacillus cereus VD014]
gi|401233139|gb|EJR39635.1| hypothetical protein IIE_01205 [Bacillus cereus VD045]
gi|401280182|gb|EJR86104.1| hypothetical protein IK9_01066 [Bacillus cereus VD166]
gi|401282941|gb|EJR88838.1| hypothetical protein IKA_03448 [Bacillus cereus VD169]
gi|401290398|gb|EJR96092.1| hypothetical protein IKG_03645 [Bacillus cereus VD200]
gi|402458879|gb|EJV90619.1| hypothetical protein IG1_01091 [Bacillus cereus HD73]
gi|449024497|gb|AGE79660.1| metallo-beta-lactamase family protein [Bacillus thuringiensis
serovar kurstaki str. HD73]
Length = 556
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|423437253|ref|ZP_17414234.1| hypothetical protein IE9_03434 [Bacillus cereus BAG4X12-1]
gi|401120408|gb|EJQ28204.1| hypothetical protein IE9_03434 [Bacillus cereus BAG4X12-1]
Length = 556
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|257053982|ref|YP_003131815.1| beta-lactamase domain protein [Halorhabdus utahensis DSM 12940]
gi|256692745|gb|ACV13082.1| beta-lactamase domain protein [Halorhabdus utahensis DSM 12940]
Length = 251
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 34/177 (19%)
Query: 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
I + V +TH HLDH+ L V +R L I PP ++ +++L ++H L
Sbjct: 51 IDLDAVLLTHHHLDHVADLLPLVKARWLAGASDLCIAGPPGTRDLLDELLDVHTYL-RKH 109
Query: 174 LNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKL 233
++ D ++ G T D+V R + H + GY ++
Sbjct: 110 VDPDATDIEPGATTLAGFDVVARAVQ--HSMAGFGY----------------------RV 145
Query: 234 KKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHA 290
+G + +P V +GDT + F AD A++L+ + +F DD + HA
Sbjct: 146 SPAGAD------APTVVVSGDTRA-FPAFLSTADG--AEVLVHDCSFPDDVETDTHA 193
>gi|365108507|ref|ZP_09336366.1| ribonuclease Z [Citrobacter freundii 4_7_47CFAA]
gi|363640401|gb|EHL79872.1| ribonuclease Z [Citrobacter freundii 4_7_47CFAA]
Length = 305
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + N++P T++ P ++E E + S + LD
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMAGNVQPLTLYGPKGLREFTETALRLSGSW--TDYPLD 117
Query: 178 LVALDVGE 185
+V + GE
Sbjct: 118 IVEITAGE 125
>gi|229071647|ref|ZP_04204865.1| Ribonuclease Z [Bacillus cereus F65185]
gi|228711583|gb|EEL63540.1| Ribonuclease Z [Bacillus cereus F65185]
Length = 307
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + T N+ V + H I GY I
Sbjct: 117 VVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI 150
>gi|229151997|ref|ZP_04280193.1| Zn-dependent hydrolase [Bacillus cereus m1550]
gi|228631552|gb|EEK88185.1| Zn-dependent hydrolase [Bacillus cereus m1550]
Length = 556
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|14590979|ref|NP_143054.1| ribonuclease Z [Pyrococcus horikoshii OT3]
gi|41017522|sp|O58883.1|RNZ_PYRHO RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|3257568|dbj|BAA30251.1| 307aa long hypothetical sulfatase [Pyrococcus horikoshii OT3]
Length = 307
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 45/214 (21%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPS 154
FD+G R ++ VFITH H DH GLP + + L+ K P I+ P
Sbjct: 34 FDVGEGTLRQMEIARISPMKIKRVFITHFHGDHYLGLPALIQTMSLWKRKDPLHIYGPEG 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDV-GETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
++ L + G + D++ ++ G++ + V F+ H +P+ GYV
Sbjct: 94 SSTFLQNLL----NSGYFAPSFDILVHEISGKSRLKFKEYEVWAFEVSHGVPALGYV--- 146
Query: 214 LRKKLKKQYIHLK---------GKQIEKLKKSG-VEITDIIL-----------SPEVAFT 252
++K K+ +LK G +++L++ +EI I+ +V ++
Sbjct: 147 FKEKDKRGNFNLKKIKELGLEPGPWMKELERQKIIEINGKIVRLLEVTGPKKRGAKVVYS 206
Query: 253 GDT--TSEFMLNPRNADALRAKILITEATFLDDE 284
GDT E + R R +LI EAT++++E
Sbjct: 207 GDTEPCDEVIEFSR-----RGTLLIHEATYVNEE 235
>gi|170767465|ref|ZP_02901918.1| ribonuclease Z [Escherichia albertii TW07627]
gi|170123799|gb|EDS92730.1| ribonuclease Z [Escherichia albertii TW07627]
Length = 305
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + N +P +I+ P I+E VE + S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMAGNAQPLSIYGPKGIREFVETALRLSGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY +
Sbjct: 118 IVEISAGEILDDGLRK---VTAYPLEHPLECYGYRV 150
>gi|417114953|ref|ZP_11966089.1| ribonuclease BN [Escherichia coli 1.2741]
gi|386140372|gb|EIG81524.1| ribonuclease BN [Escherichia coli 1.2741]
Length = 311
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P ++E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGLREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRI 156
>gi|335428981|ref|ZP_08555891.1| ribonuclease Z [Haloplasma contractile SSD-17B]
gi|335430567|ref|ZP_08557457.1| ribonuclease Z [Haloplasma contractile SSD-17B]
gi|334887970|gb|EGM26285.1| ribonuclease Z [Haloplasma contractile SSD-17B]
gi|334891922|gb|EGM30168.1| ribonuclease Z [Haloplasma contractile SSD-17B]
Length = 305
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 24/210 (11%)
Query: 112 RAIQQNFVFITHGHLDHIGGLPMYVAS-RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLG 170
RAI + + I+H H DHI GLP +A+ R +P TI P IK +E + +
Sbjct: 52 RAI--DVILISHLHGDHIYGLPGLLATIRNSERTEPITIIGPKGIKRMMESILVLAPY-- 107
Query: 171 NVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQI 230
L+ +++ L+ + ++ ++ K +H P GY + R + K + K ++
Sbjct: 108 ---LSYEIIILENPSEFTYLENMKIKTEKLNHTAPCLGYSFNIERNR-KFDVVKAKENKV 163
Query: 231 EK-----LKKSGVEITD-IILSPEVAFTGDTTS---EFMLNPRNADAL-----RAKILIT 276
K L+ + D ++ +PE + ++ + R L + +LIT
Sbjct: 164 PKKIWSVLQNEEEALYDGVVYTPEQVLGKERKGLKLSYIADTRPTKTLPEFVKGSDLLIT 223
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEDIRQAV 306
E T+ DDE +E A ++ H E AV
Sbjct: 224 EGTYGDDE-DVEKAIRNKHLTFKEAAEIAV 252
>gi|430749963|ref|YP_007212871.1| ribonuclease Z [Thermobacillus composti KWC4]
gi|430733928|gb|AGA57873.1| ribonuclease Z [Thermobacillus composti KWC4]
Length = 312
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 86/202 (42%), Gaps = 34/202 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+F+TH H DH+ GLP + SR P T+ P I+ +E F I + + EL +
Sbjct: 59 IFVTHLHGDHVFGLPGLLGSRSSMGCDAPLTLHGPRGIRHWLETTFSITGAHVHYELEIR 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKK-------QYI 223
+ D G +E + V+ +H I GY I L KL + Y
Sbjct: 119 EIDGDGGVVHE-DDQFTVKAAPLNHRIACYGYRIEERPRPGRLDAAKLAELGVPQGPLYA 177
Query: 224 HLKGKQIEKLKKSGV-EITDIILSP----EVAFTGDTTSEFMLNPRNADALR----AKIL 274
LK + L+ V D++ P +A GDTT P +A A+R A ++
Sbjct: 178 QLKRGEDATLQDGRVIRAADVVGPPIPGRVIAILGDTT------PCDA-AIRLAEGADLV 230
Query: 275 ITEATFLDDEMSIEHAQQHGHT 296
+ EATF + A ++GH+
Sbjct: 231 VHEATF--EAALAGKAAEYGHS 250
>gi|385806031|ref|YP_005842429.1| ribonuclease Z [Fervidicoccus fontis Kam940]
gi|383795894|gb|AFH42977.1| ribonuclease Z [Fervidicoccus fontis Kam940]
Length = 261
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 91/236 (38%), Gaps = 60/236 (25%)
Query: 104 FDIGRCPTRAIQQN--------FVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155
DIG R++ +N + I+H H DHI GLP + + + + + P
Sbjct: 36 LDIGEGSQRSLIKNGIGVNRIDHILISHLHGDHIFGLPGIIQTMSMEGRERKLSIISP-- 93
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHV-IPSQGYVIYLL 214
E +EK+ + + +L + + + I V PFKT H I S GY+I
Sbjct: 94 -EGIEKILNAASQITSYQLEFPIEIIKPEGEISLEQYISVYPFKTCHTNIESFGYIIKAF 152
Query: 215 -RKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTT--SEFMLNPRNADALRA 271
K KK+ L A+TGDT E + + AD
Sbjct: 153 GTGKEKKERFSL------------------------AYTGDTAPCEELIEKIKGAD---- 184
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLTEGFKSV 327
+LI ++TF D +E A GH+ S ++AKV + G KS+
Sbjct: 185 -VLIHDSTF--DSSMVEKAIAFGHS-------------TSSIAAKVAKMA-GVKSL 223
>gi|206971168|ref|ZP_03232119.1| ribonuclease Z [Bacillus cereus AH1134]
gi|229081399|ref|ZP_04213902.1| Ribonuclease Z [Bacillus cereus Rock4-2]
gi|229180422|ref|ZP_04307765.1| Ribonuclease Z [Bacillus cereus 172560W]
gi|229192354|ref|ZP_04319318.1| Ribonuclease Z [Bacillus cereus ATCC 10876]
gi|365159074|ref|ZP_09355258.1| ribonuclease Z [Bacillus sp. 7_6_55CFAA_CT2]
gi|423412054|ref|ZP_17389174.1| ribonuclease Z [Bacillus cereus BAG3O-2]
gi|423432161|ref|ZP_17409165.1| ribonuclease Z [Bacillus cereus BAG4O-1]
gi|423437595|ref|ZP_17414576.1| ribonuclease Z [Bacillus cereus BAG4X12-1]
gi|206733940|gb|EDZ51111.1| ribonuclease Z [Bacillus cereus AH1134]
gi|228591134|gb|EEK48989.1| Ribonuclease Z [Bacillus cereus ATCC 10876]
gi|228603169|gb|EEK60647.1| Ribonuclease Z [Bacillus cereus 172560W]
gi|228702021|gb|EEL54504.1| Ribonuclease Z [Bacillus cereus Rock4-2]
gi|363625590|gb|EHL76611.1| ribonuclease Z [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104122|gb|EJQ12099.1| ribonuclease Z [Bacillus cereus BAG3O-2]
gi|401116917|gb|EJQ24755.1| ribonuclease Z [Bacillus cereus BAG4O-1]
gi|401120750|gb|EJQ28546.1| ribonuclease Z [Bacillus cereus BAG4X12-1]
Length = 307
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + T N+ V + H I GY I
Sbjct: 117 VVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI 150
>gi|228954426|ref|ZP_04116452.1| Ribonuclease Z [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|423426277|ref|ZP_17403308.1| ribonuclease Z [Bacillus cereus BAG3X2-2]
gi|423503170|ref|ZP_17479762.1| ribonuclease Z [Bacillus cereus HD73]
gi|449091100|ref|YP_007423541.1| Ribonuclease Z [Bacillus thuringiensis serovar kurstaki str. HD73]
gi|228805358|gb|EEM51951.1| Ribonuclease Z [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|401111024|gb|EJQ18923.1| ribonuclease Z [Bacillus cereus BAG3X2-2]
gi|402459391|gb|EJV91128.1| ribonuclease Z [Bacillus cereus HD73]
gi|449024857|gb|AGE80020.1| Ribonuclease Z [Bacillus thuringiensis serovar kurstaki str. HD73]
Length = 307
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + T N+ V + H I GY I
Sbjct: 117 VVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI 150
>gi|429091717|ref|ZP_19154379.1| Ribonuclease Z [Cronobacter dublinensis 1210]
gi|426743659|emb|CCJ80492.1| Ribonuclease Z [Cronobacter dublinensis 1210]
Length = 286
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 92/233 (39%), Gaps = 40/233 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P ++ P IKE +E + S + L +
Sbjct: 41 IFITHLHGDHIFGLPGLLCSRSMAGCETPLDVYGPQGIKEFIETALRLSGSWTSYPLRIH 100
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIE 231
+ T + V F H + GY I K LK G +
Sbjct: 101 EI---TAGTVLDDDAFTVTAFALTHPVECYGYRIEERDKPGTLDAAALKAAGVTPGPLFQ 157
Query: 232 KLKKSGVEIT----------DIILSP----EVAFTGDT--TSEFMLNPRNADALRAKILI 275
+LK+ G +T D + +P ++A GDT T++ R+ D L+
Sbjct: 158 QLKR-GETVTLDDGRTLCGADYLSAPRPGKKIAIFGDTGPTAQAAALARDVD------LM 210
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLTEGFKSVY 328
T L+ M+ E A GH+ Q L + AK + +T F S Y
Sbjct: 211 VHETTLEAAMA-EKANGRGHS-----TTQQAATLAREAGAKRLVMTH-FSSRY 256
>gi|423358819|ref|ZP_17336322.1| ribonuclease Z [Bacillus cereus VD022]
gi|401084691|gb|EJP92937.1| ribonuclease Z [Bacillus cereus VD022]
Length = 307
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + T N+ V + H I GY I
Sbjct: 117 VVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI 150
>gi|344283025|ref|XP_003413273.1| PREDICTED: integrator complex subunit 11-like [Loxodonta africana]
Length = 719
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 43/176 (24%)
Query: 117 NFVFITHGHLDHIGGLPMY---VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV- 172
+ V I+H HLDH G LP + V G + PPT + P + ED K+ + N
Sbjct: 181 DCVIISHFHLDHCGALPYFSEMVGYDGPIYMTPPTQAICPILLEDYRKIAVDKKGEANFF 240
Query: 173 ------ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK 226
+ +VA+ + +T ++ +++ ++ + HV+ G ++ ++
Sbjct: 241 TSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVL---GAAMFQIK----------- 286
Query: 227 GKQIEKLKKSGVEITDIILSPEVAFTGD--TTSEFMLNPRNADALRAKILITEATF 280
+ S V +TGD T + L D R +LITE+T+
Sbjct: 287 -----------------VGSESVVYTGDYNMTPDRHLGAAWIDRCRPNLLITESTY 325
>gi|440286829|ref|YP_007339594.1| RNAse Z [Enterobacteriaceae bacterium strain FGI 57]
gi|440046351|gb|AGB77409.1| RNAse Z [Enterobacteriaceae bacterium strain FGI 57]
Length = 305
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + N+ P T++ P ++E VE + S + + +
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNMNPVTLYGPKGLREFVETTLRLSGSWTDYPMEI- 118
Query: 178 LVALDVGETYEMRNDIV-VRPFKTHHVIPSQGYVI 211
++V + M + + V + +H + GY +
Sbjct: 119 ---VEVSAGFVMDDGLRKVTAYPLNHPVECYGYRV 150
>gi|334131631|ref|ZP_08505393.1| Beta-lactamase domain protein [Methyloversatilis universalis FAM5]
gi|333443104|gb|EGK71069.1| Beta-lactamase domain protein [Methyloversatilis universalis FAM5]
Length = 255
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 20/108 (18%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPP-------------SIKEDVEKLF 163
+ VF+TH HLDHI LP+ + + G +P T++ SI D ++
Sbjct: 48 DHVFVTHSHLDHIACLPLMIDTVGELRTRPLTVWTSAPTLEVLRRHIFNWSIWPDFTEIP 107
Query: 164 EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+ R + L VG+ +M N +R H +P+ GY +
Sbjct: 108 SVERPF------MCFRELRVGDEIDMGNR-AIRVLPAQHTVPAVGYAV 148
>gi|167034630|ref|YP_001669861.1| ribonuclease Z [Pseudomonas putida GB-1]
gi|189043788|sp|B0KMS1.1|RNZ_PSEPG RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|166861118|gb|ABY99525.1| Ribonuclease Z [Pseudomonas putida GB-1]
Length = 319
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GLP +AS G+ +P + +P ++ + V + + EL L
Sbjct: 58 IFITHVHGDHCFGLPGLLASAGMSGRTQPLELILPVALHDWVRQGLVASDTFLPFELRL- 116
Query: 178 LVALDVGETYEMRNDIV-VRPFKTHHVIPSQGYVIYLLR--KKLKKQYIHLKG 227
L V E E RN+ + V + H +PS G+V L +L Q + +G
Sbjct: 117 ---LAVEELAEWRNEALQVTTVQLSHRVPSVGFVFTELNPEPRLDTQRLQAEG 166
>gi|16804016|ref|NP_465501.1| hypothetical protein lmo1977 [Listeria monocytogenes EGD-e]
gi|386050953|ref|YP_005968944.1| ribonuclease Z [Listeria monocytogenes FSL R2-561]
gi|404284473|ref|YP_006685370.1| ribonuclease Z [Listeria monocytogenes SLCC2372]
gi|405759027|ref|YP_006688303.1| ribonuclease Z [Listeria monocytogenes SLCC2479]
gi|41017570|sp|Q8Y5S8.1|RNZ_LISMO RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|16411430|emb|CAD00055.1| lmo1977 [Listeria monocytogenes EGD-e]
gi|346424799|gb|AEO26324.1| ribonuclease Z [Listeria monocytogenes FSL R2-561]
gi|404233975|emb|CBY55378.1| ribonuclease Z [Listeria monocytogenes SLCC2372]
gi|404236909|emb|CBY58311.1| ribonuclease Z [Listeria monocytogenes SLCC2479]
Length = 306
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 88/204 (43%), Gaps = 38/204 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR G NL TI+ P I E VE + + ++
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSNL---TIYGPAGIAEYVETSLRLSGTRLTYKI 115
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIH--- 224
N + ++ G +E + IV H + S GY I L +KLK +
Sbjct: 116 NFE--EIEPGVIFEDKMFIVTAD-DLDHGVRSFGYRIVEKDKQGALNAEKLKADGVEAGP 172
Query: 225 ----LKGKQIEKLKKSGV-EITDIILSPE----VAFTGD---TTSEFMLNPRNADALRAK 272
LK +I L V + + I P+ ++ GD T+SE L AL A
Sbjct: 173 VFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTRETSSELEL------ALNAD 226
Query: 273 ILITEATFLDDEMSIEHAQQHGHT 296
IL+ EATF D+ + H T
Sbjct: 227 ILVHEATFEGDKAKMAGEYMHSTT 250
>gi|312113025|ref|YP_004010621.1| beta-lactamase-like protein [Rhodomicrobium vannielii ATCC 17100]
gi|311218154|gb|ADP69522.1| beta-lactamase-like protein [Rhodomicrobium vannielii ATCC 17100]
Length = 247
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 105 DIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNL--KPPTIFVPPSIKEDVEKL 162
++ R RA + + I+H H DH GGLP V R + KP I PP I+ E L
Sbjct: 42 ELARAGIRASSADAILISHCHGDHFGGLPSLVLERMFIDRTDKPMEILGPPGIESRFESL 101
Query: 163 FE-IHRSLGNVELNLDLVALDV--GETYEMRNDIVVRPFKTHH 202
E ++ + V+ +++ D+ G E R +++ F+ H
Sbjct: 102 MENVYPGILGVKKPFEILFRDLHPGFAIEWRG-LMIEAFEVDH 143
>gi|288932766|ref|YP_003436826.1| ribonuclease Z [Ferroglobus placidus DSM 10642]
gi|288895014|gb|ADC66551.1| ribonuclease Z [Ferroglobus placidus DSM 10642]
Length = 302
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 48/218 (22%)
Query: 101 KCAFDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVP 152
K FD G R + + +FITH H DH G+ + + L + KP +I+ P
Sbjct: 32 KILFDCGEGTQRQMMKAKTGFNIEAIFITHLHTDHFIGVFGLLETMSLNSREKPLSIYTP 91
Query: 153 PSIKEDVEKLFEIHRSLG--NVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV 210
S + + KLF R G N+ + +V L G+ N V FKT H++ S GY
Sbjct: 92 NS--KFLRKLF---REFGYHNLGFPVRVVGLRDGDFVRFEN-FKVLAFKTDHIVESLGYA 145
Query: 211 IYLLRKKLKKQYIHLKGKQI--------EKLKKS-GVEITDIILSPE-----------VA 250
+ + + ++ K +++ KL + +E + I++P+ V
Sbjct: 146 --FVEDERRGKFNVEKARELGIPPGPLYSKLARGEAIEFGEKIITPDMVLGEKRPGWKVV 203
Query: 251 FTGDTT--SEFMLNPRNADALRAKILITEATF---LDD 283
+TGDT + + +NAD +LI +A F LDD
Sbjct: 204 YTGDTAPVEKLVEIAKNAD-----LLIHDAAFTSELDD 236
>gi|300812694|ref|ZP_07093103.1| ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300496321|gb|EFK31434.1| ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 309
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 21/193 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++R ++ P TI+ P I++ V+ I ++ + +
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGIEQFVKTSLRISKA--KISYPIK 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
V L+ G V K H I S G+ + LL KL ++ G +
Sbjct: 117 FVTLEEGGKIVSERGFEVYTEKLDHRIDSWGFRVVEADKAGELLMDKL-AEFKVPNGPLL 175
Query: 231 EKLKKS-GVEITDIILSPEVAFTGDTTS----EFMLNPRNADALR-----AKILITEATF 280
KLK+ VE+ D + F G + + R+ ++R A +L+ EATF
Sbjct: 176 GKLKRGEQVELADGTVLNGKDFLGPAKKGRVVTVIYDTRSTPSIRRLADHADVLVHEATF 235
Query: 281 LDDEMSIEHAQQH 293
E + H
Sbjct: 236 DASEGKLARDYYH 248
>gi|229061814|ref|ZP_04199147.1| Ribonuclease Z [Bacillus cereus AH603]
gi|423512245|ref|ZP_17488776.1| ribonuclease Z [Bacillus cereus HuA2-1]
gi|228717560|gb|EEL69224.1| Ribonuclease Z [Bacillus cereus AH603]
gi|402449216|gb|EJV81053.1| ribonuclease Z [Bacillus cereus HuA2-1]
Length = 307
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 44/229 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V + + G +E N+ V + H I GY I LL KL +
Sbjct: 117 IVEITEEGIVFE-DNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPVF 175
Query: 223 IHLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AK 272
LK ++ +L+ V + D I P+ + GDT R +A R A
Sbjct: 176 KRLKDGEVVELENGTVLDGKDFIGPPQKGRVITILGDT--------RYCEASRELAQDAD 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
+L+ EATF ++ +Q + + +QA + + +AK + LT
Sbjct: 228 VLVHEATFAAED------EQQAYDYFHSTSKQAA-SIAVQANAKRLILT 269
>gi|424814715|ref|ZP_18239893.1| putative hydrolase of the metallo-beta-lactamase superfamily
[Candidatus Nanosalina sp. J07AB43]
gi|339758331|gb|EGQ43588.1| putative hydrolase of the metallo-beta-lactamase superfamily
[Candidatus Nanosalina sp. J07AB43]
Length = 437
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 23/150 (15%)
Query: 103 AFDIGRCPTR--AIQQNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKED 158
+ +IG P + +N V I HGHLDH+G +P S I+ E
Sbjct: 52 SLEIGAVPEDEPVLDKNVVGIVIGHGHLDHVGAIPKLAGSHDC------PIYCTNYTAEI 105
Query: 159 VEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPS---------QGY 209
VE+ E R L+ ++ L+ GE + + + +H IP +GY
Sbjct: 106 VERTIEDDRK----NLSNQIIRLEKGEEMNVSGNFNLEFAHVNHSIPDSTLSLLDTPEGY 161
Query: 210 VIYLLRKKLKKQYIHLKGKQIEKLKKSGVE 239
V+Y K+ + + + +E+LK+ G E
Sbjct: 162 VVYGNDMKIDQSPVIEETTDVERLKEVGEE 191
>gi|229081052|ref|ZP_04213563.1| Zn-dependent hydrolase [Bacillus cereus Rock4-2]
gi|228702256|gb|EEL54731.1| Zn-dependent hydrolase [Bacillus cereus Rock4-2]
Length = 556
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNGGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|395240764|ref|ZP_10417788.1| Ribonuclease Z [Lactobacillus gigeriorum CRBIP 24.85]
gi|394475546|emb|CCI87765.1| Ribonuclease Z [Lactobacillus gigeriorum CRBIP 24.85]
Length = 312
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 84/196 (42%), Gaps = 27/196 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +A+R ++ P TI+ P +++ V + ++ V ++
Sbjct: 59 IFISHNHGDHIFGLPGLLATRSFQGDVGPLTIYGPAGLEQFVRTALRVSKT--KVSYPIN 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQY-----IHL 225
V LD V K H + S G+ + LL +L K + I+
Sbjct: 117 FVELDQDGLICNDRGFKVYTKKLDHRVASYGFRVEEASHPGELLVDELAKYHIPNGPIYG 176
Query: 226 KGKQIEKLKKSGVEITD--IILSPE-----VAFTGDTTSEFMLNPRNAD-ALRAKILITE 277
K K EK+ + D L PE V+ DT S P A+ A A +LI E
Sbjct: 177 KLKAGEKITLDDGTVIDGKNFLGPERPGRIVSVIYDTRS----TPAIAELAKDADVLIHE 232
Query: 278 ATFLDDEMSIEHAQQH 293
+TF +E + A H
Sbjct: 233 STFGGNEAKLAKAYYH 248
>gi|347522679|ref|YP_004780249.1| ribonuclease Z [Pyrolobus fumarii 1A]
gi|343459561|gb|AEM37997.1| ribonuclease Z [Pyrolobus fumarii 1A]
Length = 304
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 32/203 (15%)
Query: 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
++ V +TH H DH GL + S + + + P + +E + + R G+V
Sbjct: 53 LRVKVVAVTHMHGDHFLGLAGLLQSMTMGGRREELFVIGP--RGLLEYIEIVERLTGHVR 110
Query: 174 LNLDLVALDV--GETYEMRNDIVVRPFKTHHV-IPSQGYVIYLL----RKKLKK-QYIHL 225
+ D+V +V G YE N +V++ F+ H + + GYV R KL+K + + L
Sbjct: 111 -SFDIVFREVEEGVVYE-DNRVVIKAFRVCHGHVAAYGYVFEEKPRPGRVKLEKLKELGL 168
Query: 226 K-GKQIEKLKKS-GVEITDIILSPE-----------VAFTGDT--TSEFMLNPRNADALR 270
K G + ++K+ V + +++ PE V +TGDT + R AD
Sbjct: 169 KPGPYLSRVKRGESVIVNGVLVRPEDVLEEPRPGVRVVYTGDTRPCKTVIDVARGAD--- 225
Query: 271 AKILITEATFLDDEMSIEHAQQH 293
+LI E+TFL+ E S H + H
Sbjct: 226 --LLIHESTFLESEASEAHEKGH 246
>gi|365850467|ref|ZP_09390930.1| ribonuclease Z [Yokenella regensburgei ATCC 43003]
gi|364567133|gb|EHM44805.1| ribonuclease Z [Yokenella regensburgei ATCC 43003]
Length = 287
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P TI+ P +K VE ++ S + L
Sbjct: 40 NKIFITHLHGDHLFGLPGLLCSRSMQGNTLPLTIYGPKGLKTFVETALQLSGSWTDYPLT 99
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
++ + G+ ++ V + +H + GY I
Sbjct: 100 IEEIG--PGKLFD-DGHFRVTAYPLNHPVECYGYRI 132
>gi|422845501|ref|ZP_16892211.1| ribonuclease Z [Lactobacillus delbrueckii subsp. lactis DSM 20072]
gi|325684269|gb|EGD26442.1| ribonuclease Z [Lactobacillus delbrueckii subsp. lactis DSM 20072]
Length = 309
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 21/193 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++R ++ P TI+ P I++ V+ I ++ + +
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGIEQFVKTSLRISKT--KISYPIK 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
V L+ G V K H I S G+ + LL KL ++ G +
Sbjct: 117 FVTLEEGGKIVSERGFEVYTEKLDHRIDSWGFRVVEADKAGELLMDKL-AEFKVPNGPLL 175
Query: 231 EKLKKS-GVEITDIILSPEVAFTGDTTS----EFMLNPRNADALR-----AKILITEATF 280
KLK+ VE+ D + F G + + R+ ++R A +L+ EATF
Sbjct: 176 GKLKRGEQVELADGTVLNGKDFLGPAKKGRIVTVIYDTRSTPSIRRLADHADVLVHEATF 235
Query: 281 LDDEMSIEHAQQH 293
E + H
Sbjct: 236 DASEGKLARDYYH 248
>gi|30022222|ref|NP_833853.1| ribonuclease Z [Bacillus cereus ATCC 14579]
gi|228922891|ref|ZP_04086189.1| Ribonuclease Z [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|228960410|ref|ZP_04122062.1| Ribonuclease Z [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|229111615|ref|ZP_04241166.1| Ribonuclease Z [Bacillus cereus Rock1-15]
gi|229129421|ref|ZP_04258392.1| Ribonuclease Z [Bacillus cereus BDRD-Cer4]
gi|229146717|ref|ZP_04275083.1| Ribonuclease Z [Bacillus cereus BDRD-ST24]
gi|229152342|ref|ZP_04280535.1| Ribonuclease Z [Bacillus cereus m1550]
gi|296504633|ref|YP_003666333.1| ribonuclease Z [Bacillus thuringiensis BMB171]
gi|423582352|ref|ZP_17558463.1| ribonuclease Z [Bacillus cereus VD014]
gi|423585375|ref|ZP_17561462.1| ribonuclease Z [Bacillus cereus VD045]
gi|423630867|ref|ZP_17606614.1| ribonuclease Z [Bacillus cereus VD154]
gi|423635031|ref|ZP_17610684.1| ribonuclease Z [Bacillus cereus VD156]
gi|423640775|ref|ZP_17616393.1| ribonuclease Z [Bacillus cereus VD166]
gi|423650007|ref|ZP_17625577.1| ribonuclease Z [Bacillus cereus VD169]
gi|423657070|ref|ZP_17632369.1| ribonuclease Z [Bacillus cereus VD200]
gi|41017542|sp|Q818V3.1|RNZ_BACCR RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|29897779|gb|AAP11054.1| Metal-dependent hydrolase [Bacillus cereus ATCC 14579]
gi|228631304|gb|EEK87940.1| Ribonuclease Z [Bacillus cereus m1550]
gi|228636737|gb|EEK93201.1| Ribonuclease Z [Bacillus cereus BDRD-ST24]
gi|228654026|gb|EEL09893.1| Ribonuclease Z [Bacillus cereus BDRD-Cer4]
gi|228671997|gb|EEL27290.1| Ribonuclease Z [Bacillus cereus Rock1-15]
gi|228799271|gb|EEM46236.1| Ribonuclease Z [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|228836946|gb|EEM82289.1| Ribonuclease Z [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|296325685|gb|ADH08613.1| ribonuclease Z [Bacillus thuringiensis BMB171]
gi|401213231|gb|EJR19972.1| ribonuclease Z [Bacillus cereus VD014]
gi|401234018|gb|EJR40504.1| ribonuclease Z [Bacillus cereus VD045]
gi|401264234|gb|EJR70346.1| ribonuclease Z [Bacillus cereus VD154]
gi|401279017|gb|EJR84947.1| ribonuclease Z [Bacillus cereus VD156]
gi|401279836|gb|EJR85758.1| ribonuclease Z [Bacillus cereus VD166]
gi|401283287|gb|EJR89184.1| ribonuclease Z [Bacillus cereus VD169]
gi|401289813|gb|EJR95517.1| ribonuclease Z [Bacillus cereus VD200]
Length = 307
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + T N+ V + H I GY I
Sbjct: 117 VVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI 150
>gi|374636870|ref|ZP_09708413.1| RNA-metabolising metallo-beta-lactamase [Methanotorris formicicus
Mc-S-70]
gi|373557613|gb|EHP84014.1| RNA-metabolising metallo-beta-lactamase [Methanotorris formicicus
Mc-S-70]
Length = 419
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 14/126 (11%)
Query: 100 LKCAFDIGRCPTRAIQQNF--VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKE 157
L C D + +N V ++H HLDH G +P Y R +Y P + + K+
Sbjct: 29 LDCGMDPTNNAIPKVDENVDAVVVSHAHLDHCGAIPFY-KFRKIYCTTPTADLMYITWKD 87
Query: 158 DVE-----KLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY 212
+ K +I RSL N E+ L+ E ++ DI ++ + H++ S +
Sbjct: 88 TLNLSKSYKEEDIQRSLNNTEV------LNYREERQITEDITLKFYNAGHILGSASICLD 141
Query: 213 LLRKKL 218
+ KK+
Sbjct: 142 IDGKKI 147
>gi|18313915|ref|NP_560582.1| hypothetical protein PAE3218 [Pyrobaculum aerophilum str. IM2]
gi|41017572|sp|Q8ZTJ7.1|RNZ_PYRAE RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|18161484|gb|AAL64764.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 287
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 42/206 (20%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ +TH H DHI GLP V + + + P S+ + KL
Sbjct: 58 TLIAVTHMHEDHILGLPGLVITSKFLGGR-LKVLAPKSMHGALSKL-------------- 102
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL---LRKKLKKQYIHLKGKQIEKL 233
++V ++YE ++ + H + + G++I + L K K E +
Sbjct: 103 ---GVEVADSYE-EERFKIKCVEVCHTVDACGWLIQWDVGYKLDLSKTSGLPKWALTELI 158
Query: 234 KKSGVEITDIILSPE------------VAFTGDTT--SEFMLNPRNADALRAKILITEAT 279
K V+I D I++PE + +TGDT E + D +LI EAT
Sbjct: 159 KGKPVKIGDRIITPEEVADPAHKRFKYLLYTGDTAPCPEMWKKVGSVD-----VLIHEAT 213
Query: 280 FLDDEMSIEHAQQHGHTHLSEDIRQA 305
F DD +S A + GH+ +++ I A
Sbjct: 214 FADD-VSPSKAHEEGHSTVADAIEAA 238
>gi|42783256|ref|NP_980503.1| ribonuclease Z [Bacillus cereus ATCC 10987]
gi|206976331|ref|ZP_03237239.1| ribonuclease Z [Bacillus cereus H3081.97]
gi|217961634|ref|YP_002340204.1| ribonuclease Z [Bacillus cereus AH187]
gi|222097590|ref|YP_002531647.1| ribonuclease z [Bacillus cereus Q1]
gi|229140877|ref|ZP_04269422.1| Ribonuclease Z [Bacillus cereus BDRD-ST26]
gi|375286149|ref|YP_005106588.1| metallo-beta-lactamase family protein [Bacillus cereus NC7401]
gi|423354643|ref|ZP_17332268.1| ribonuclease Z [Bacillus cereus IS075]
gi|423374050|ref|ZP_17351389.1| ribonuclease Z [Bacillus cereus AND1407]
gi|423566892|ref|ZP_17543139.1| ribonuclease Z [Bacillus cereus MSX-A12]
gi|56749438|sp|Q731F6.1|RNZ_BACC1 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808611|sp|B7HNQ7.1|RNZ_BACC7 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808612|sp|B9IXD7.1|RNZ_BACCQ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|42739184|gb|AAS43111.1| metallo-beta-lactamase family protein [Bacillus cereus ATCC 10987]
gi|206745527|gb|EDZ56926.1| ribonuclease Z [Bacillus cereus H3081.97]
gi|217065116|gb|ACJ79366.1| ribonuclease Z [Bacillus cereus AH187]
gi|221241648|gb|ACM14358.1| metallo-beta-lactamase family protein [Bacillus cereus Q1]
gi|228642667|gb|EEK98953.1| Ribonuclease Z [Bacillus cereus BDRD-ST26]
gi|358354676|dbj|BAL19848.1| metallo-beta-lactamase family protein [Bacillus cereus NC7401]
gi|401086489|gb|EJP94712.1| ribonuclease Z [Bacillus cereus IS075]
gi|401094865|gb|EJQ02935.1| ribonuclease Z [Bacillus cereus AND1407]
gi|401215407|gb|EJR22124.1| ribonuclease Z [Bacillus cereus MSX-A12]
Length = 307
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 32/223 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPLFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
LK ++ +L+ + D I P+ + GDT F R A A +L+ EA
Sbjct: 177 RLKDGEVVELENGTILNGQDFIGPPQKGRIITILGDT--RFCEASREL-AQDADVLVHEA 233
Query: 279 TFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
TF ++ +Q + + +QA + + +AK + LT
Sbjct: 234 TFAAED------EQQAYDYFHSTSKQAA-SIALQANAKRLILT 269
>gi|335045118|ref|ZP_08538141.1| ribonuclease Z [Oribacterium sp. oral taxon 108 str. F0425]
gi|333758904|gb|EGL36461.1| ribonuclease Z [Oribacterium sp. oral taxon 108 str. F0425]
Length = 301
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 119 VFITHGHLDHIGGLPMYVASRG-LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ TH H DHI GLP + S G KP + P +K V+ L I L +L+
Sbjct: 57 ICFTHYHADHISGLPGMLLSMGNAERTKPVRLIGPKGLKRVVDGLRMIAPEL---PFSLE 113
Query: 178 LVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIYLLRK 216
V + GE +++ V+ FK H IP GY + + RK
Sbjct: 114 YVEI-AGEVETFQSESFVIEAFKVQHSIPCYGYRLSIPRK 152
>gi|58337247|ref|YP_193832.1| metallo-beta-lactamase superfamily [Lactobacillus acidophilus NCFM]
gi|227903832|ref|ZP_04021637.1| ribonuclease Z [Lactobacillus acidophilus ATCC 4796]
gi|75432945|sp|Q5FKH3.1|RNZ_LACAC RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|58254564|gb|AAV42801.1| putative metallo-beta-lactamase superfamily [Lactobacillus
acidophilus NCFM]
gi|227868719|gb|EEJ76140.1| ribonuclease Z [Lactobacillus acidophilus ATCC 4796]
Length = 312
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 53/228 (23%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP +++R ++ P TI+ P
Sbjct: 36 FDVGEATQHQILRTNIRLRKVTKIFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAG 95
Query: 155 IKEDVEKLFEIHRS-----LGNVELNL-DLVALDVG-ETYEMRNDIVVRPFKTHHVIPSQ 207
I++ V+ ++ R+ + VEL+ L+ D G + Y R D H IPS
Sbjct: 96 IEDFVKISLKVSRTKISYPIHYVELSEPGLICEDRGFKVYTDRLD---------HRIPSF 146
Query: 208 GYVIY-------LLRKKLKKQYI-------HLK-GKQIEKLKKSGVEITDIILSPE---- 248
G+ + LL KL + I LK G+Q+ + ++ D L PE
Sbjct: 147 GFRVVEDSHPGELLIDKLAEYNIPNGPILGKLKNGEQVALADGTILDGKD-FLGPEKPGR 205
Query: 249 ---VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQH 293
+ + +TS ++AD +L+ E+TF DE + H H
Sbjct: 206 IITIIYDTRSTSSIAHLAKDAD-----VLVHESTFAGDESKMAHNYYH 248
>gi|423115375|ref|ZP_17103066.1| ribonuclease Z [Klebsiella oxytoca 10-5245]
gi|376381461|gb|EHS94198.1| ribonuclease Z [Klebsiella oxytoca 10-5245]
Length = 306
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P +KE VE + S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETALRLSGSW--TDYP 115
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
L +V ++ G ++ V + +H + GY I
Sbjct: 116 LAIVEVEPGLVFD-EAGFRVTAWPLNHPVECYGYRI 150
>gi|448630002|ref|ZP_21672813.1| ribonuclease Z [Haloarcula vallismortis ATCC 29715]
gi|445756751|gb|EMA08110.1| ribonuclease Z [Haloarcula vallismortis ATCC 29715]
Length = 311
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 37/232 (15%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSI 155
FD G R + + +F+TH H DH+ G+P + + + I P
Sbjct: 35 FDCGEGTQRQMMHFGTGFAVDHLFVTHLHGDHVLGIPGLLQTWDFNERERAIAIHTPAGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ ++++L + + + + + ++ V+ G+ R + +R +T H S GYV+
Sbjct: 95 RGNIKQLIQANGTTPSFPVRINEVS--AGDVVLDRPEYEIRAIETEHRCASVGYVLDEDD 152
Query: 212 ---YLLRKKLKKQYIHLKGKQIEKLKKS-GVEITDIILSPEV-----------AFTGDT- 255
R+K ++++ G + KL + +E + PE +TGDT
Sbjct: 153 RKGKFDREKAEEEFGIPPGPKYSKLHRGEAIEHEGETIQPEAVVGPPRPGRRFVYTGDTL 212
Query: 256 -TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-RQA 305
T + +AD +L+ +ATF +D A H + D+ RQA
Sbjct: 213 PTESVIEASEDAD-----LLVHDATFAEDRKERAKATAHSTAREAADVARQA 259
>gi|423109439|ref|ZP_17097134.1| ribonuclease Z [Klebsiella oxytoca 10-5243]
gi|376382173|gb|EHS94907.1| ribonuclease Z [Klebsiella oxytoca 10-5243]
Length = 306
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P +KE VE + S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETALRLSGSW--TDYP 115
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
L +V ++ G ++ V + +H + GY I
Sbjct: 116 LAIVEVEPGLVFD-EAGFRVTAWPLNHPVECYGYRI 150
>gi|419920568|ref|ZP_14438682.1| ribonuclease Z [Escherichia coli KD2]
gi|388384576|gb|EIL46298.1| ribonuclease Z [Escherichia coli KD2]
Length = 311
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L +
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIV 125
Query: 178 LVALDVGETYEMRNDIV--VRPFKTHHVIPSQGYVI 211
+ D E+ +D + V + H + GY I
Sbjct: 126 EIGAD-----EILDDGLRKVTAYPLEHPLECYGYRI 156
>gi|352681284|ref|YP_004891808.1| metallo-beta-lactamase family protein [Thermoproteus tenax Kra 1]
gi|350274083|emb|CCC80728.1| metallo-beta-lactamase family protein [Thermoproteus tenax Kra 1]
Length = 249
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 70/180 (38%), Gaps = 36/180 (20%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
++VFITH H+DH GLP + + + + P P I ED K H +L + +
Sbjct: 54 DYVFITHSHMDHFLGLPEMLFQAHIEDRRKPIYIFAPKIVEDTLKAAAPH-TLRGLRYEV 112
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
L + G E R+ VV HH ++ K S
Sbjct: 113 HLRRISEGALLEGRSLRVVSTKACHHT-----------------------AEEAYAFKVS 149
Query: 237 GVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHT 296
DI ++ FTGDT+ R A A +L+ EAT + M I ++GHT
Sbjct: 150 A----DI----DIVFTGDTSPGCETIERLAQG--ADVLVHEATCNEQYMDI--CVRYGHT 197
>gi|228966742|ref|ZP_04127786.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar sotto str.
T04001]
gi|402558876|ref|YP_006601600.1| metallo-beta-lactamase [Bacillus thuringiensis HD-771]
gi|228792841|gb|EEM40399.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar sotto str.
T04001]
gi|401787528|gb|AFQ13567.1| metallo-beta-lactamase [Bacillus thuringiensis HD-771]
Length = 556
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|374813618|ref|ZP_09717355.1| hydrolase [Treponema primitia ZAS-1]
Length = 212
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 92 ETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV 151
E VI P I R ++ ++ +THGH DHI LP VA+ + PP I +
Sbjct: 22 ECAVIDPGADPKVIISRLKRLNLRPRYILLTHGHFDHIAALPDLVAA---FKDAPPVIAI 78
Query: 152 PPSIKEDVEKL----FEIHR-----SLGNVELNLDLVALDVGETYEMRND-IVVRPFKTH 201
++D + L +E+HR + GN + +D + D+ + E+ ++ V+ PF T
Sbjct: 79 H---RDDGKYLGPNAYEVHRESFTAAAGNADY-VDALWKDMPQADELLSEGSVIGPFTTL 134
Query: 202 HV 203
H+
Sbjct: 135 HL 136
>gi|313123510|ref|YP_004033769.1| ribonuclease z [Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312280073|gb|ADQ60792.1| Ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 309
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 21/193 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++R ++ P TI+ P I++ V+ I ++ + +
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGIEQFVKTSLRISKT--KISYPIK 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
V L+ G V K H I S G+ + LL KL ++ G +
Sbjct: 117 FVTLEEGGKIVSERGFEVYTEKLDHRIDSWGFRVVEADKAGELLMDKL-AEFKVPNGPLL 175
Query: 231 EKLKKSG-VEITDIILSPEVAFTGDTTS----EFMLNPRNADALR-----AKILITEATF 280
KLK+ VE+ D + F G + + R+ ++R A +L+ EATF
Sbjct: 176 GKLKRGEHVELADGTVLNGKDFLGPAKKGRIVTVIYDTRSTPSIRRLADHADVLVHEATF 235
Query: 281 LDDEMSIEHAQQH 293
E + H
Sbjct: 236 DASEGKLARDYYH 248
>gi|228987335|ref|ZP_04147455.1| Ribonuclease Z [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|229157725|ref|ZP_04285800.1| Ribonuclease Z [Bacillus cereus ATCC 4342]
gi|228625682|gb|EEK82434.1| Ribonuclease Z [Bacillus cereus ATCC 4342]
gi|228772307|gb|EEM20753.1| Ribonuclease Z [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
Length = 307
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 32/223 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPLFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
LK ++ +L+ + D I P+ + GDT F R A A +L+ EA
Sbjct: 177 RLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDT--RFCEASREL-AQDADVLVHEA 233
Query: 279 TFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
TF ++ +Q + + +QA + + +AK + LT
Sbjct: 234 TFAAED------EQQAYDYFHSTSKQAA-SIALQANAKRLILT 269
>gi|228943546|ref|ZP_04105981.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228973795|ref|ZP_04134372.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980350|ref|ZP_04140661.1| Zn-dependent hydrolase [Bacillus thuringiensis Bt407]
gi|384187800|ref|YP_005573696.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676118|ref|YP_006928489.1| ribonuclease J 2 [Bacillus thuringiensis Bt407]
gi|452200178|ref|YP_007480259.1| Ribonuclease J2 [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
gi|228779455|gb|EEM27711.1| Zn-dependent hydrolase [Bacillus thuringiensis Bt407]
gi|228785947|gb|EEM33949.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228816133|gb|EEM62323.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|326941509|gb|AEA17405.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175247|gb|AFV19552.1| ribonuclease J 2 [Bacillus thuringiensis Bt407]
gi|452105571|gb|AGG02511.1| Ribonuclease J2 [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
Length = 556
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|49478379|ref|YP_037858.1| metallo-beta-lactamase family protein [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|49329935|gb|AAT60581.1| metallo-beta-lactamase family protein [Bacillus thuringiensis
serovar konkukian str. 97-27]
Length = 556
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|330836512|ref|YP_004411153.1| RNAse Z [Sphaerochaeta coccoides DSM 17374]
gi|329748415|gb|AEC01771.1| RNAse Z [Sphaerochaeta coccoides DSM 17374]
Length = 308
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 117 NFVFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FI+H H DH+ GLP + + S + P I+ P +KE +E +R + ++ +N
Sbjct: 56 NSIFISHMHADHVTGLPGILMLSSQVERDTPLYIYGPRKLKEYIEA----NRRILDMYIN 111
Query: 176 LDLVALDV--GETYEMRNDIVVRPFKTHHVIPSQGY 209
+++ + V G +E ++ V F+ +H P GY
Sbjct: 112 YEIIVIPVEPGRIFET-DEYFVEAFELNHTKPCLGY 146
>gi|218898896|ref|YP_002447307.1| metallo-beta-lactamase [Bacillus cereus G9842]
gi|228902299|ref|ZP_04066458.1| Zn-dependent hydrolase [Bacillus thuringiensis IBL 4222]
gi|228922512|ref|ZP_04085813.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|423359218|ref|ZP_17336721.1| hypothetical protein IC1_01198 [Bacillus cereus VD022]
gi|423385301|ref|ZP_17362557.1| hypothetical protein ICE_03047 [Bacillus cereus BAG1X1-2]
gi|423528341|ref|ZP_17504786.1| hypothetical protein IGE_01893 [Bacillus cereus HuB1-1]
gi|423561796|ref|ZP_17538072.1| hypothetical protein II5_01200 [Bacillus cereus MSX-A1]
gi|423635431|ref|ZP_17611084.1| hypothetical protein IK7_01840 [Bacillus cereus VD156]
gi|434376854|ref|YP_006611498.1| Zn-dependent hydrolase [Bacillus thuringiensis HD-789]
gi|218545233|gb|ACK97627.1| metallo-beta-lactamase family protein [Bacillus cereus G9842]
gi|228837107|gb|EEM82447.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228857336|gb|EEN01837.1| Zn-dependent hydrolase [Bacillus thuringiensis IBL 4222]
gi|401085090|gb|EJP93336.1| hypothetical protein IC1_01198 [Bacillus cereus VD022]
gi|401202053|gb|EJR08918.1| hypothetical protein II5_01200 [Bacillus cereus MSX-A1]
gi|401278182|gb|EJR84118.1| hypothetical protein IK7_01840 [Bacillus cereus VD156]
gi|401635357|gb|EJS53112.1| hypothetical protein ICE_03047 [Bacillus cereus BAG1X1-2]
gi|401875411|gb|AFQ27578.1| Zn-dependent hydrolase [Bacillus thuringiensis HD-789]
gi|402452004|gb|EJV83823.1| hypothetical protein IGE_01893 [Bacillus cereus HuB1-1]
Length = 556
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|56756026|gb|AAW26191.1| unknown [Schistosoma japonicum]
Length = 136
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 267 DALRAKILITEATFLDD-EMSIEHAQQHGHTHLSEDIRQAVLKLQS 311
D L ++LI EATFLD+ + IE A+ GHTHL E IRQ L+S
Sbjct: 45 DLLSTQLLIMEATFLDNPDRRIESARNRGHTHLDE-IRQNASLLKS 89
>gi|392980035|ref|YP_006478623.1| ribonuclease Z [Enterobacter cloacae subsp. dissolvens SDM]
gi|392325968|gb|AFM60921.1| ribonuclease Z [Enterobacter cloacae subsp. dissolvens SDM]
Length = 305
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + N P TI+ P I E V+ + S + L+
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNANPLTIYGPAGICEFVDTTLRLSGSW--TDYPLE 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + G ++ D V +H + GY I
Sbjct: 118 VVEITEGLVFD-DGDYTVTARPLNHPVECYGYRI 150
>gi|301024047|ref|ZP_07187763.1| ribonuclease Z [Escherichia coli MS 69-1]
gi|300396779|gb|EFJ80317.1| ribonuclease Z [Escherichia coli MS 69-1]
Length = 305
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L +
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIV 119
Query: 178 LVALDVGETYEMRNDIV--VRPFKTHHVIPSQGYVI 211
+ D E+ +D + V + H + GY I
Sbjct: 120 EIGAD-----EILDDGLRKVTAYPLEHPLECYGYRI 150
>gi|228986941|ref|ZP_04147067.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|229157375|ref|ZP_04285453.1| Zn-dependent hydrolase [Bacillus cereus ATCC 4342]
gi|229197908|ref|ZP_04324624.1| Zn-dependent hydrolase [Bacillus cereus m1293]
gi|423574596|ref|ZP_17550715.1| hypothetical protein II9_01817 [Bacillus cereus MSX-D12]
gi|423604575|ref|ZP_17580468.1| hypothetical protein IIK_01156 [Bacillus cereus VD102]
gi|228585626|gb|EEK43728.1| Zn-dependent hydrolase [Bacillus cereus m1293]
gi|228626102|gb|EEK82851.1| Zn-dependent hydrolase [Bacillus cereus ATCC 4342]
gi|228772719|gb|EEM21159.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|401212121|gb|EJR18867.1| hypothetical protein II9_01817 [Bacillus cereus MSX-D12]
gi|401245195|gb|EJR51553.1| hypothetical protein IIK_01156 [Bacillus cereus VD102]
Length = 556
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|297517667|ref|ZP_06936053.1| ribonuclease Z [Escherichia coli OP50]
Length = 144
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE 188
+V + GE +
Sbjct: 124 IVEIGAGEILD 134
>gi|299821603|ref|ZP_07053491.1| ribonuclease Z [Listeria grayi DSM 20601]
gi|299817268|gb|EFI84504.1| ribonuclease Z [Listeria grayi DSM 20601]
Length = 343
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 91/211 (43%), Gaps = 40/211 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVE---KLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR KP TI+ P I+E VE +L H S
Sbjct: 98 IFITHMHGDHIFGLPGLLSSRSFQGKEKPITIYGPKGIQEYVESALRLSGTHLSYTIAFE 157
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK------- 220
++ L +T+ + D++ H I S GY I L +KL++
Sbjct: 158 EIEPGLLFDDDTFSVSCDLL------DHGIASYGYRIVQKDKPGALYAEKLQEIGVPPGP 211
Query: 221 --QYIHLKGKQIEKLKKSGVEITDIILSPE----VAFTGDTT---SEFMLNPRNADALRA 271
Q I KG+ +E ++ +D I + +A GDT + L NAD
Sbjct: 212 IFQAIK-KGESVELEDGRTIDGSDYIGPSQAGKIIAIYGDTRQIPASLELG-ENAD---- 265
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
+++ EATF + H H TH + ++
Sbjct: 266 -VIVHEATFEAGLEKLAHEYMHSTTHQAAEL 295
>gi|229031428|ref|ZP_04187428.1| Zn-dependent hydrolase [Bacillus cereus AH1271]
gi|228729717|gb|EEL80697.1| Zn-dependent hydrolase [Bacillus cereus AH1271]
Length = 556
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|196034203|ref|ZP_03101613.1| metallo-beta-lactamase family protein [Bacillus cereus W]
gi|195993277|gb|EDX57235.1| metallo-beta-lactamase family protein [Bacillus cereus W]
Length = 556
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|228960003|ref|ZP_04121668.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|423628878|ref|ZP_17604627.1| hypothetical protein IK5_01730 [Bacillus cereus VD154]
gi|228799746|gb|EEM46698.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|401268423|gb|EJR74471.1| hypothetical protein IK5_01730 [Bacillus cereus VD154]
Length = 556
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|347525517|ref|YP_004832265.1| ribonuclease Z [Lactobacillus ruminis ATCC 27782]
gi|345284476|gb|AEN78329.1| Ribonuclease Z [Lactobacillus ruminis ATCC 27782]
Length = 313
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 97/233 (41%), Gaps = 40/233 (17%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN---LKPPTIFVPPSIKEDVEKLFE 164
R R + + +FITH H DH+ GLP +++SR +P TI+ P I V +
Sbjct: 48 RTTIRPRKVDKIFITHLHGDHLFGLPGFLSSRSFQTGEETRPLTIYGPKGIASYVRASMQ 107
Query: 165 IHRSLGNVELNLDLVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRK 216
+ ++ + L LV L D G +E + V H I GY I LL
Sbjct: 108 VTQT--RLSYPLKLVELTDEGTVFE-DDKFKVECRFLEHRIQCFGYRIEEKPHPGELLID 164
Query: 217 KLKKQ-------YIHLKGKQIEKLKKSGVEIT--DIILSPE----VAFTGDT--TSEFML 261
KL++ Y LK + KL G EI D + +P+ V GDT T
Sbjct: 165 KLREDKIPEGPIYGRLKAGETVKL-DDGREICGQDYVGAPQKGRIVTILGDTRQTPAIFD 223
Query: 262 NPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS 314
+NAD +L+ E TF + + H S I+ A + L++ VS
Sbjct: 224 LAKNAD-----VLVHECTFGRGDARLARNYYH-----STCIQAANVALKADVS 266
>gi|229140439|ref|ZP_04268994.1| Zn-dependent hydrolase [Bacillus cereus BDRD-ST26]
gi|228643000|gb|EEK99276.1| Zn-dependent hydrolase [Bacillus cereus BDRD-ST26]
Length = 556
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 61/137 (44%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG+V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGHV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|229174463|ref|ZP_04301995.1| Zn-dependent hydrolase [Bacillus cereus MM3]
gi|228609023|gb|EEK66313.1| Zn-dependent hydrolase [Bacillus cereus MM3]
Length = 556
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|417708316|ref|ZP_12357349.1| ribonuclease Z [Shigella flexneri VA-6]
gi|420332146|ref|ZP_14833802.1| ribonuclease Z [Shigella flexneri K-1770]
gi|333001416|gb|EGK20984.1| ribonuclease Z [Shigella flexneri VA-6]
gi|391251041|gb|EIQ10260.1| ribonuclease Z [Shigella flexneri K-1770]
Length = 305
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAQRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE + +R V + H + GY I
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRI 150
>gi|223043089|ref|ZP_03613136.1| ribonuclease Z [Staphylococcus capitis SK14]
gi|417908051|ref|ZP_12551818.1| ribonuclease Z [Staphylococcus capitis VCU116]
gi|222443300|gb|EEE49398.1| ribonuclease Z [Staphylococcus capitis SK14]
gi|341595138|gb|EGS37816.1| ribonuclease Z [Staphylococcus capitis VCU116]
Length = 306
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 45/235 (19%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FI+H H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFISHMHGDHIFGLPGLLTSRSFQGGENKPLTLIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
I+ +E ++ S LN + +++ + + ++ V+ +H I S GY I
Sbjct: 96 GIQNYIETSLKLSES----HLNYPITYIEINQQFTYHHEGFTVQAEVLNHGITSYGYRIE 151
Query: 213 LLRKKLKKQYIHLKGKQIE-KLKKSGVEITDIIL-----------------SPEVAFTGD 254
LK +E K V+I D P +A GD
Sbjct: 152 APTTPGTINVEALKAIGLEPGPKYQEVKIQDTFEHNGLMYQSDDFKGEAKPGPIIAIFGD 211
Query: 255 T---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAV 306
T +E++L +NAD +++ EAT+++ E ++ A + H+H+ +D+ Q +
Sbjct: 212 TKPCDNEYVL-AKNAD-----VMVHEATYIEGEKTL--ANNYHHSHI-DDVFQLI 257
>gi|228909622|ref|ZP_04073445.1| Zn-dependent hydrolase [Bacillus thuringiensis IBL 200]
gi|228849911|gb|EEM94742.1| Zn-dependent hydrolase [Bacillus thuringiensis IBL 200]
Length = 556
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|30263800|ref|NP_846177.1| metallo-beta-lactamase [Bacillus anthracis str. Ames]
gi|42782883|ref|NP_980130.1| metallo-beta-lactamase [Bacillus cereus ATCC 10987]
gi|47778225|ref|YP_020574.2| metallo-beta-lactamase [Bacillus anthracis str. 'Ames Ancestor']
gi|49186647|ref|YP_029899.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
Sterne]
gi|52141691|ref|YP_085138.1| metallo-beta-lactamase family protein [Bacillus cereus E33L]
gi|65321125|ref|ZP_00394084.1| COG0595: Predicted hydrolase of the metallo-beta-lactamase
superfamily [Bacillus anthracis str. A2012]
gi|118479017|ref|YP_896168.1| metallo-beta-lactamase family protein [Bacillus thuringiensis str.
Al Hakam]
gi|165872604|ref|ZP_02217235.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
A0488]
gi|167635847|ref|ZP_02394156.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
A0442]
gi|167639771|ref|ZP_02398040.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
A0193]
gi|170687820|ref|ZP_02879034.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
A0465]
gi|170706828|ref|ZP_02897286.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
A0389]
gi|177652083|ref|ZP_02934629.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
A0174]
gi|190568402|ref|ZP_03021309.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|196038463|ref|ZP_03105772.1| metallo-beta-lactamase family protein [Bacillus cereus NVH0597-99]
gi|196044453|ref|ZP_03111688.1| metallo-beta-lactamase family protein [Bacillus cereus 03BB108]
gi|206978197|ref|ZP_03239078.1| ribonuclease J 2 (RNase J2) [Bacillus cereus H3081.97]
gi|217961218|ref|YP_002339786.1| metallo-beta-lactamase family protein [Bacillus cereus AH187]
gi|218904925|ref|YP_002452759.1| metallo-beta-lactamase family protein [Bacillus cereus AH820]
gi|225865777|ref|YP_002751155.1| ribonuclease J2 [Bacillus cereus 03BB102]
gi|227813294|ref|YP_002813303.1| metallo-beta-lactamase family protein [Bacillus anthracis str. CDC
684]
gi|228928847|ref|ZP_04091879.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935096|ref|ZP_04097924.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947518|ref|ZP_04109808.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|229092839|ref|ZP_04223973.1| Zn-dependent hydrolase [Bacillus cereus Rock3-42]
gi|229123311|ref|ZP_04252515.1| Zn-dependent hydrolase [Bacillus cereus 95/8201]
gi|229601285|ref|YP_002868037.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
A0248]
gi|254683495|ref|ZP_05147355.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
CNEVA-9066]
gi|254722016|ref|ZP_05183805.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
A1055]
gi|254735836|ref|ZP_05193542.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
Western North America USA6153]
gi|254739638|ref|ZP_05197332.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
Kruger B]
gi|254755989|ref|ZP_05208020.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
Vollum]
gi|254759350|ref|ZP_05211375.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
Australia 94]
gi|375285719|ref|YP_005106158.1| metallo-beta-lactamase family protein [Bacillus cereus NC7401]
gi|376267691|ref|YP_005120403.1| ribonuclease J2 [Bacillus cereus F837/76]
gi|384181607|ref|YP_005567369.1| metallo-beta-lactamase family protein [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|386737621|ref|YP_006210802.1| Beta-lactamase domain protein [Bacillus anthracis str. H9401]
gi|402556081|ref|YP_006597352.1| beta-lactamase domain-containing protein [Bacillus cereus FRI-35]
gi|421507339|ref|ZP_15954259.1| Beta-lactamase domain protein [Bacillus anthracis str. UR-1]
gi|421639552|ref|ZP_16080143.1| Beta-lactamase domain protein [Bacillus anthracis str. BF1]
gi|423353499|ref|ZP_17331126.1| hypothetical protein IAU_01575 [Bacillus cereus IS075]
gi|423374406|ref|ZP_17351744.1| hypothetical protein IC5_03460 [Bacillus cereus AND1407]
gi|423550453|ref|ZP_17526780.1| hypothetical protein IGW_01084 [Bacillus cereus ISP3191]
gi|423567308|ref|ZP_17543555.1| hypothetical protein II7_00531 [Bacillus cereus MSX-A12]
gi|30258444|gb|AAP27663.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
Ames]
gi|42738810|gb|AAS42738.1| metallo-beta-lactamase family protein [Bacillus cereus ATCC 10987]
gi|47551930|gb|AAT33049.2| metallo-beta-lactamase family protein [Bacillus anthracis str.
'Ames Ancestor']
gi|49180574|gb|AAT55950.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
Sterne]
gi|51975160|gb|AAU16710.1| metallo-beta-lactamase family protein [Bacillus cereus E33L]
gi|118418242|gb|ABK86661.1| metallo-beta-lactamase family protein [Bacillus thuringiensis str.
Al Hakam]
gi|164711636|gb|EDR17182.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
A0488]
gi|167512172|gb|EDR87549.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
A0193]
gi|167528804|gb|EDR91562.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
A0442]
gi|170128246|gb|EDS97115.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
A0389]
gi|170668136|gb|EDT18885.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
A0465]
gi|172082452|gb|EDT67517.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
A0174]
gi|190560406|gb|EDV14384.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|196024488|gb|EDX63160.1| metallo-beta-lactamase family protein [Bacillus cereus 03BB108]
gi|196030871|gb|EDX69469.1| metallo-beta-lactamase family protein [Bacillus cereus NVH0597-99]
gi|206743614|gb|EDZ55040.1| ribonuclease J 2 (RNase J2) [Bacillus cereus H3081.97]
gi|217065243|gb|ACJ79493.1| metallo-beta-lactamase family protein [Bacillus cereus AH187]
gi|218539519|gb|ACK91917.1| metallo-beta-lactamase family protein [Bacillus cereus AH820]
gi|225787554|gb|ACO27771.1| ribonuclease J2 [Bacillus cereus 03BB102]
gi|227003787|gb|ACP13530.1| metallo-beta-lactamase family protein [Bacillus anthracis str. CDC
684]
gi|228660087|gb|EEL15723.1| Zn-dependent hydrolase [Bacillus cereus 95/8201]
gi|228690461|gb|EEL44244.1| Zn-dependent hydrolase [Bacillus cereus Rock3-42]
gi|228812038|gb|EEM58369.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228824566|gb|EEM70370.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830654|gb|EEM76259.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229265693|gb|ACQ47330.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
A0248]
gi|324327691|gb|ADY22951.1| metallo-beta-lactamase family protein [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|358354246|dbj|BAL19418.1| metallo-beta-lactamase family protein [Bacillus cereus NC7401]
gi|364513491|gb|AEW56890.1| Ribonuclease J2 (endoribonuclease in RNA processing) [Bacillus
cereus F837/76]
gi|384387473|gb|AFH85134.1| Beta-lactamase domain protein [Bacillus anthracis str. H9401]
gi|401089312|gb|EJP97483.1| hypothetical protein IAU_01575 [Bacillus cereus IS075]
gi|401094318|gb|EJQ02400.1| hypothetical protein IC5_03460 [Bacillus cereus AND1407]
gi|401190069|gb|EJQ97119.1| hypothetical protein IGW_01084 [Bacillus cereus ISP3191]
gi|401214396|gb|EJR21126.1| hypothetical protein II7_00531 [Bacillus cereus MSX-A12]
gi|401797291|gb|AFQ11150.1| Beta-lactamase domain protein [Bacillus cereus FRI-35]
gi|401822473|gb|EJT21623.1| Beta-lactamase domain protein [Bacillus anthracis str. UR-1]
gi|403393217|gb|EJY90462.1| Beta-lactamase domain protein [Bacillus anthracis str. BF1]
Length = 556
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|68073799|ref|XP_678814.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56499400|emb|CAI00194.1| conserved hypothetical protein [Plasmodium berghei]
Length = 862
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 42/198 (21%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY--NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FI+H H DH G+ ++ R + +L PP I +P ++K + E+ + + +
Sbjct: 640 IFISHAHADHHVGIYYFLYIRKMIFPHLDPPLILIPKTLKNWMNLFNELFLDIE-MRIIY 698
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
+ L++ E N + + FK +H+ S G +K
Sbjct: 699 NENDLEIKEIISEDNLLTLHLFKVNHIKESYG------------------------IKIE 734
Query: 237 GVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIE-----HAQ 291
G +I I+ S + D +F A ILI EATF DDE+ +E H+
Sbjct: 735 GKDIGSIVYSADTR-PCDNVKKF--------AKDCNILIHEATF-DDELLVEAINKKHST 784
Query: 292 QHGHTHLSEDIRQAVLKL 309
H +S D+ L L
Sbjct: 785 IHEAMQISLDVNCKTLIL 802
>gi|423401375|ref|ZP_17378548.1| hypothetical protein ICW_01773 [Bacillus cereus BAG2X1-2]
gi|423477920|ref|ZP_17454635.1| hypothetical protein IEO_03378 [Bacillus cereus BAG6X1-1]
gi|401654365|gb|EJS71908.1| hypothetical protein ICW_01773 [Bacillus cereus BAG2X1-2]
gi|402428845|gb|EJV60937.1| hypothetical protein IEO_03378 [Bacillus cereus BAG6X1-1]
Length = 556
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|423458019|ref|ZP_17434816.1| hypothetical protein IEI_01159 [Bacillus cereus BAG5X2-1]
gi|401148403|gb|EJQ55896.1| hypothetical protein IEI_01159 [Bacillus cereus BAG5X2-1]
Length = 556
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|423511832|ref|ZP_17488363.1| hypothetical protein IG3_03329 [Bacillus cereus HuA2-1]
gi|402450093|gb|EJV81927.1| hypothetical protein IG3_03329 [Bacillus cereus HuA2-1]
Length = 556
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 QTIDSNSTVEF-NSTNVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|384181963|ref|YP_005567725.1| ribonuclease Z [Bacillus thuringiensis serovar finitimus YBT-020]
gi|324328047|gb|ADY23307.1| ribonuclease Z [Bacillus thuringiensis serovar finitimus YBT-020]
Length = 307
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 93/221 (42%), Gaps = 42/221 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPLFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK ++ +L+ + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDT--------RYCEASRKLAQDADV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEDIRQAV-LKLQSKV 313
L+ EATF ++ +Q + + +QA + LQ+ V
Sbjct: 229 LVHEATFAAED------EQQAYDYFHSTSKQAASIALQANV 263
>gi|222097243|ref|YP_002531300.1| metallo-beta-lactamase [Bacillus cereus Q1]
gi|221241301|gb|ACM14011.1| metallo-beta-lactamase family protein [Bacillus cereus Q1]
Length = 510
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 24 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 73
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 74 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 132
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 133 LGKMAQIGNEGVLCLLS 149
>gi|422016908|ref|ZP_16363484.1| ribonuclease Z [Providencia burhodogranariea DSM 19968]
gi|414091338|gb|EKT53024.1| ribonuclease Z [Providencia burhodogranariea DSM 19968]
Length = 304
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + TI+ P +K +E I S + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGSTDVLTIYGPKGLKLYIETTLSISESY--MTYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V ++ G+ ++ + +V + +H + GY I L +KL + I +G +
Sbjct: 117 IVEIESGQLFD-DGEFIVTAYPLNHRVECYGYRIQEHAKKGPLDVEKLAQDNIP-RGPWM 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDT--TSEFMLNPRNADALRAKIL 274
+ L K+G IT D + P+ +A GDT T + + ++AD ++
Sbjct: 175 QAL-KAGETITLEDGRSVNGADYLGEPKPGKVIAIFGDTEPTEQALFLAKDAD-----VM 228
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEDIRQAV 306
+ E T + + A + GHT + + A+
Sbjct: 229 VHETTL--ENAYQQKANERGHTTTGQAAQLAL 258
>gi|352104841|ref|ZP_08960561.1| ribonuclease Z [Halomonas sp. HAL1]
gi|350598626|gb|EHA14737.1| ribonuclease Z [Halomonas sp. HAL1]
Length = 320
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GLP +AS G+ + P TI P IK +E E + + LD
Sbjct: 58 IFITHVHGDHCYGLPGILASAGMGGRQAPLTIVAPAGIKAWLEATCEATQLC--LPFVLD 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
+ D + E + I V ++ H PS Y
Sbjct: 116 FIDSDELPSVEFES-ITVTTYRLSHRAPSYAY 146
>gi|47569068|ref|ZP_00239757.1| metallo-beta-lactamase superfamily protein [Bacillus cereus G9241]
gi|47554230|gb|EAL12592.1| metallo-beta-lactamase superfamily protein [Bacillus cereus G9241]
Length = 510
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 24 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 73
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 74 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 132
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 133 LGKMAQIGNEGVLCLLS 149
>gi|342211093|ref|ZP_08703829.1| hypothetical beta-CASP family DNA/RNA hydrolase [Mycoplasma anatis
1340]
gi|341578540|gb|EGS28913.1| hypothetical beta-CASP family DNA/RNA hydrolase [Mycoplasma anatis
1340]
Length = 627
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ V L IF P ++ FE H+ + ++
Sbjct: 65 LFITHGHEDHIGGVIYLVKQTKL-----KKIFAPKIAISYLKLKFEEHK----ITRKIEF 115
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP 205
V +D ++Y+ +VV + H IP
Sbjct: 116 VEIDKNDSYKFPKGVVVDFWTAQHSIP 142
>gi|228916435|ref|ZP_04080002.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229186035|ref|ZP_04313205.1| Zn-dependent hydrolase [Bacillus cereus BGSC 6E1]
gi|228597454|gb|EEK55104.1| Zn-dependent hydrolase [Bacillus cereus BGSC 6E1]
gi|228843238|gb|EEM88319.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
Length = 556
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G ++Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|417980639|ref|ZP_12621319.1| ribonuclease Z [Lactobacillus casei 12A]
gi|410524962|gb|EKP99869.1| ribonuclease Z [Lactobacillus casei 12A]
Length = 320
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 96/221 (43%), Gaps = 40/221 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR-GLYNLKPPTIFVPPSIKEDVEKLFEIHRS-----LGNV 172
VFITH H DHI GLP ++ASR P TI+ P I++ V+ ++ +S L V
Sbjct: 59 VFITHLHGDHIFGLPGFLASRSNQGGTDPLTIYGPSGIEDFVKTSLKVSQSHLSYPLKFV 118
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
L VA + +T+++ D + H I S G+ I LL K++
Sbjct: 119 LLQHPGVAFE-DQTFKVTFD------RLDHRITSFGFRIEEKPHPGELLIDKVRAAKIPS 171
Query: 222 ---YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKI 273
Y LK + L + + P VA GDT M N A A +
Sbjct: 172 GPVYAALKAGETVTLPDGRIFDGHDFIGPAQPGRTVAIFGDTR---MCNRALPLAAGADV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS 314
L+ E+TF DE + A+Q+ H + +++ A L ++ V
Sbjct: 229 LVHESTFGPDESQL--AKQYYH---ATNVQAAALAKRAGVG 264
>gi|313205576|ref|YP_004044753.1| rnase z [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|386320451|ref|YP_006016613.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Riemerella anatipestifer RA-GD]
gi|416111414|ref|ZP_11592627.1| ribonuclease Z [Riemerella anatipestifer RA-YM]
gi|442315253|ref|YP_007356556.1| hypothetical protein G148_1558 [Riemerella anatipestifer RA-CH-2]
gi|312444892|gb|ADQ81247.1| RNAse Z [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|315022694|gb|EFT35719.1| ribonuclease Z [Riemerella anatipestifer RA-YM]
gi|325334994|gb|ADZ11268.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Riemerella anatipestifer RA-GD]
gi|441484176|gb|AGC40862.1| hypothetical protein G148_1558 [Riemerella anatipestifer RA-CH-2]
Length = 304
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIH 166
R + + N +FI+H H DH GLP +AS L + P I+ P I+E +E +F I
Sbjct: 47 RAKAKFSKINHIFISHLHGDHCFGLPGLIASFRLLGRETPLHIYGPKGIQEMLETIFRIT 106
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT--HHVIPSQGYVIYLLRKKLKKQYIH 224
+ E+ L+ ++ ++ D V F +H I G YL R+K K++ H
Sbjct: 107 ETQRGFEVIYH--ELEGNQSVKIYEDHKVEVFTIPLNHRIYCNG---YLFREKPKER--H 159
Query: 225 LKGKQIEK 232
L ++I K
Sbjct: 160 LNMEEISK 167
>gi|104781771|ref|YP_608269.1| ribonuclease Z [Pseudomonas entomophila L48]
gi|122403296|sp|Q1IA50.1|RNZ_PSEE4 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|95110758|emb|CAK15471.1| putative Ribonuclease Z [Pseudomonas entomophila L48]
Length = 320
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHR 167
R P +FITH H DH GLP +AS G+ K P + P+ D + +
Sbjct: 47 RSPLSMRDLRAIFITHVHGDHCFGLPGLLASAGMSGRKAPLPLIMPTALHDWVRQ-GLAA 105
Query: 168 SLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
S + L L AL+ + + N I V + H +PS G+V
Sbjct: 106 SDTYLPFELQLQALETFDGFTCGN-IQVGKVELSHRVPSYGFVF 148
>gi|422416499|ref|ZP_16493456.1| ribonuclease Z [Listeria innocua FSL J1-023]
gi|313623068|gb|EFR93349.1| ribonuclease Z [Listeria innocua FSL J1-023]
Length = 306
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 82/201 (40%), Gaps = 32/201 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR TI+ P I E VE + + ++N +
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSDLTIYGPAGIAEYVETSLRLSGTRLTYKINFE 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIH------ 224
+ V EM +V H + S GY I L +KLK +
Sbjct: 119 EIEPGVIFEDEM---FLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVEAGPVFQ 175
Query: 225 -LKGKQIEKLKKSGV-EITDIILSPE----VAFTGD---TTSEFMLNPRNADALRAKILI 275
LK +I L V + + I P+ V+ GD T SE L AL A IL+
Sbjct: 176 KLKNGEIVTLADGRVIDGKNYIGEPQKGKIVSIFGDTRETVSELEL------ALNADILV 229
Query: 276 TEATFLDDEMSIEHAQQHGHT 296
EATF D+ + H T
Sbjct: 230 HEATFEGDKAKMAGEYMHSTT 250
>gi|319649504|ref|ZP_08003660.1| metallo-beta-lactamase [Bacillus sp. 2_A_57_CT2]
gi|317398666|gb|EFV79348.1| metallo-beta-lactamase [Bacillus sp. 2_A_57_CT2]
Length = 555
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 93/246 (37%), Gaps = 56/246 (22%)
Query: 119 VFITHGHLDHIGGLPMYVASRG---LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+F+THGH DHIGGL YV ++ +Y K +KE E +E+N
Sbjct: 70 IFLTHGHEDHIGGLS-YVLTKVNVPVYGTKLTLALAKAKMKEQ-----EYRGKAKFIEIN 123
Query: 176 LDL-VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHL 225
D V D + V F+T H IP S+G ++Y K + L
Sbjct: 124 SDTKVEFDSAD---------VTFFRTGHSIPDSVGVAIHTSEGAIVYTGDFKFDQAATAL 174
Query: 226 KGKQIEKLKKSGVEITDIIL--SPEVAFTGDTTSEFMLNPRNADAL-RAKILITEATFLD 282
+I K+ + G E +L S E G T SE + A AK + A+F
Sbjct: 175 YKPEIGKMARLGEEGVLCLLSDSTEAEKPGYTNSESKVAREMTAAFYAAKGRVIAASFAS 234
Query: 283 DEMSIEH-------------------------AQQHGHTHLSEDIRQAVLKLQSKVSAKV 317
D + I+H A Q G+ + ED+ V ++ ++
Sbjct: 235 DLIRIQHIFDAAMETGRKVAVVGRSLQKIFDIAMQLGYLQVGEDVIIPVAEISKYSDDQI 294
Query: 318 VPLTEG 323
V LT G
Sbjct: 295 VVLTTG 300
>gi|448417256|ref|ZP_21579274.1| ribonuclease Z [Halosarcina pallida JCM 14848]
gi|445678479|gb|ELZ30972.1| ribonuclease Z [Halosarcina pallida JCM 14848]
Length = 312
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 101/256 (39%), Gaps = 54/256 (21%)
Query: 101 KCAFDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVP 152
+ FD G R + + + +F+TH H DH+ G+P V + + + P + P
Sbjct: 32 RLLFDCGEGTQRQMMRFGTGFTVSHLFVTHLHGDHVLGIPGLVQTWDFNDREEPLVVHAP 91
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHV-IPSQGYVI 211
P K + L E +N+ V G D VR F+T+H + S GY
Sbjct: 92 PGSKRHLRNLVESGGYRPGFPINIHEVK--PGNVALSGGDYEVRTFETNHRNVRSMGYA- 148
Query: 212 YLLRKKLKKQYIHLK--------GKQIEKLKKS-GVEITD-IILSPE-----------VA 250
L+ + ++ K G +L + VE+ D ++ PE +
Sbjct: 149 -LVEDDRRGRFDREKAEALGVPVGPAFGRLHEGESVELEDGTVVRPEQVVGESRPGRRLV 207
Query: 251 FTGDT-----TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
+TGDT T E P +L+ +ATF DD + A+ GH+ E
Sbjct: 208 YTGDTRPVDATVEVAAEP--------DLLVHDATFADDRA--DRARGTGHSTGRE----- 252
Query: 306 VLKLQSKVSAKVVPLT 321
++ S+ A+ + LT
Sbjct: 253 AAEIASRAGARRLALT 268
>gi|359393919|ref|ZP_09186972.1| Ribonuclease Z [Halomonas boliviensis LC1]
gi|357971166|gb|EHJ93611.1| Ribonuclease Z [Halomonas boliviensis LC1]
Length = 320
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ ITH H DH GLP +AS G+ K P TI P IK +E E + + L+
Sbjct: 58 ILITHVHGDHCYGLPGILASAGMGGRKAPLTIVAPAGIKAWLEATCEATQLC--LPFTLE 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSG 237
+ D + E + I V F+ H PS Y +K+ IEKL + G
Sbjct: 116 FIDSDELPSVEFES-IAVTTFRLSHRAPS--YAYGFTERKVDADL------NIEKLTQKG 166
Query: 238 V 238
+
Sbjct: 167 I 167
>gi|354724434|ref|ZP_09038649.1| ribonuclease Z [Enterobacter mori LMG 25706]
Length = 305
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + N P TI+ P +E VE + S + LD
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNANPLTIYGPAGTREFVETTLRLSGSW--TDYPLD 117
Query: 178 LVALDVGETY-EMRNDIVVRPFKTHHVIPSQGYVI 211
+V + G + + + +P +H + GY I
Sbjct: 118 VVEIAEGLVFDDGAYTVTAQPL--NHPVECYGYRI 150
>gi|423389943|ref|ZP_17367169.1| hypothetical protein ICG_01791 [Bacillus cereus BAG1X1-3]
gi|401640859|gb|EJS58585.1| hypothetical protein ICG_01791 [Bacillus cereus BAG1X1-3]
Length = 556
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T + N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVDF-NSTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNNGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|228992487|ref|ZP_04152414.1| Zn-dependent hydrolase [Bacillus pseudomycoides DSM 12442]
gi|228767121|gb|EEM15757.1| Zn-dependent hydrolase [Bacillus pseudomycoides DSM 12442]
Length = 556
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 59/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D E N V F T H IP SQG ++Y K + I G
Sbjct: 120 KTIDSNSAVEF-NTTTVSFFGTTHSIPDSVGVCFHTSQGAIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|229134604|ref|ZP_04263414.1| Zn-dependent hydrolase [Bacillus cereus BDRD-ST196]
gi|229168536|ref|ZP_04296259.1| Zn-dependent hydrolase [Bacillus cereus AH621]
gi|423518433|ref|ZP_17494914.1| hypothetical protein IG7_03503 [Bacillus cereus HuA2-4]
gi|423592260|ref|ZP_17568291.1| hypothetical protein IIG_01128 [Bacillus cereus VD048]
gi|228614942|gb|EEK72044.1| Zn-dependent hydrolase [Bacillus cereus AH621]
gi|228648865|gb|EEL04890.1| Zn-dependent hydrolase [Bacillus cereus BDRD-ST196]
gi|401161160|gb|EJQ68528.1| hypothetical protein IG7_03503 [Bacillus cereus HuA2-4]
gi|401230502|gb|EJR37009.1| hypothetical protein IIG_01128 [Bacillus cereus VD048]
Length = 556
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NSTNVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|379795864|ref|YP_005325862.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356872854|emb|CCE59193.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 306
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 90/224 (40%), Gaps = 42/224 (18%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGE--TYEMRNDIVVRPFKTHHVIPSQGYVI 211
IK VE + S LN + +++ + TY V +H IPS GY +
Sbjct: 96 GIKAYVEMSLNLSES----HLNYPITYIEIDDHLTYHHEG-FTVEAHLLNHGIPSYGYRV 150
Query: 212 Y-------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTG 253
+ + LK+ +Y +K + + + D P VA G
Sbjct: 151 IAPETTGTINVEALKQIGLEPGPKYQEVKSQDTFEHNGQVYQSQDFRGTSKQGPIVAIFG 210
Query: 254 DT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
DT + L ++AD +++ EAT++D E + + H H
Sbjct: 211 DTKPCANERLISQDAD-----VMVHEATYIDGEKHLANNYHHSH 249
>gi|116494840|ref|YP_806574.1| beta-lactamase superfamily hydrolase [Lactobacillus casei ATCC 334]
gi|191638347|ref|YP_001987513.1| ribonuclease Z [Lactobacillus casei BL23]
gi|301066401|ref|YP_003788424.1| beta-lactamase superfamily metal-dependent hydrolase [Lactobacillus
casei str. Zhang]
gi|385820047|ref|YP_005856434.1| Ribonuclease Z [Lactobacillus casei LC2W]
gi|385823248|ref|YP_005859590.1| Ribonuclease Z [Lactobacillus casei BD-II]
gi|409997212|ref|YP_006751613.1| ribonuclease Z [Lactobacillus casei W56]
gi|417986717|ref|ZP_12627283.1| ribonuclease Z [Lactobacillus casei 32G]
gi|418010805|ref|ZP_12650576.1| ribonuclease Z [Lactobacillus casei Lc-10]
gi|122263742|sp|Q039J0.1|RNZ_LACC3 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808642|sp|B3WE54.1|RNZ_LACCB RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|116104990|gb|ABJ70132.1| RNAse Z [Lactobacillus casei ATCC 334]
gi|190712649|emb|CAQ66655.1| Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Lactobacillus casei BL23]
gi|300438808|gb|ADK18574.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Lactobacillus casei str. Zhang]
gi|327382374|gb|AEA53850.1| Ribonuclease Z [Lactobacillus casei LC2W]
gi|327385575|gb|AEA57049.1| Ribonuclease Z [Lactobacillus casei BD-II]
gi|406358224|emb|CCK22494.1| Ribonuclease Z [Lactobacillus casei W56]
gi|410525178|gb|EKQ00084.1| ribonuclease Z [Lactobacillus casei 32G]
gi|410553384|gb|EKQ27387.1| ribonuclease Z [Lactobacillus casei Lc-10]
Length = 320
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 40/221 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR-GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DHI GLP ++ASR P TI+ P I++ V+ ++ +S + L
Sbjct: 59 VFITHLHGDHIFGLPGFLASRSNQGGTDPLTIYGPSGIEDFVKTSLKVSQSHLSYPLKFV 118
Query: 178 L-----VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
L VA + +T+++ D + H I S G+ I LL K++
Sbjct: 119 LLQHPGVAFE-DQTFKVTFD------RLDHRITSFGFRIEEKPHPGELLIDKVRAAKIPS 171
Query: 222 ---YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKI 273
Y LK + L + + P VA GDT M N A A +
Sbjct: 172 GPVYAALKAGETVTLPDGRIFDGHDFIGPAQPGRTVAIFGDTR---MCNRALPLAAGADV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS 314
L+ E+TF DE + A+Q+ H + +++ A L ++ V
Sbjct: 229 LVHESTFGPDESQL--AKQYYH---ATNVQAAALAKRAGVG 264
>gi|423418295|ref|ZP_17395384.1| hypothetical protein IE3_01767 [Bacillus cereus BAG3X2-1]
gi|401106568|gb|EJQ14529.1| hypothetical protein IE3_01767 [Bacillus cereus BAG3X2-1]
Length = 556
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T + N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVDF-NSTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNNGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|229180075|ref|ZP_04307419.1| Zn-dependent hydrolase [Bacillus cereus 172560W]
gi|228603284|gb|EEK60761.1| Zn-dependent hydrolase [Bacillus cereus 172560W]
Length = 556
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGVD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|228476129|ref|ZP_04060837.1| ribonuclease Z [Staphylococcus hominis SK119]
gi|314936370|ref|ZP_07843717.1| ribonuclease Z [Staphylococcus hominis subsp. hominis C80]
gi|418619914|ref|ZP_13182725.1| ribonuclease Z [Staphylococcus hominis VCU122]
gi|228269952|gb|EEK11432.1| ribonuclease Z [Staphylococcus hominis SK119]
gi|313654989|gb|EFS18734.1| ribonuclease Z [Staphylococcus hominis subsp. hominis C80]
gi|374823477|gb|EHR87472.1| ribonuclease Z [Staphylococcus hominis VCU122]
Length = 306
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 95/231 (41%), Gaps = 42/231 (18%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGEDKPLTLIGPT 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
+++ +E ++ S N + + +D TY + V +H IPS GY I
Sbjct: 96 GLQQFIETALKLSESHLNYPIT--YIEIDNNFTYH-HHGFTVSSRLLNHGIPSYGYRIEA 152
Query: 214 LRKKLKKQYIHLKGKQIE-KLKKSGVEITD-------IILS----------PEVAFTGDT 255
LK +E K V++ D I LS P V GDT
Sbjct: 153 PTTPGTIDVTALKAIGLEPGPKYQEVKMFDTFEYNNQIYLSKDFKGPAKPGPIVTIFGDT 212
Query: 256 ---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIR 303
+E++L A A I+I EAT+++ + + A + H+H+ + R
Sbjct: 213 KPCDNEYIL------AENADIMIHEATYIEGDKIL--ANNYHHSHIDDVFR 255
>gi|448381383|ref|ZP_21561586.1| ribonuclease Z [Haloterrigena thermotolerans DSM 11522]
gi|445663191|gb|ELZ15945.1| ribonuclease Z [Haloterrigena thermotolerans DSM 11522]
Length = 314
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 103/269 (38%), Gaps = 55/269 (20%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + + + P I P
Sbjct: 35 FDAGEGTQRQMMRFGTGFSVSQLFVTHCHGDHVLGIPGLLQTMAFNDREEPLAIHTPHGT 94
Query: 156 KEDVEKLFEIHRSLGNV-ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ ++ L +LGN + + + G+ ++ VR F T H S GY LL
Sbjct: 95 RGQIKGLIN---ALGNRPSFPVRINEVGDGDVAYRADEYEVRAFGTDHDTRSVGYA--LL 149
Query: 215 RKKLKKQYIHLK--------GKQIEKLKKS-GVEITD-IILSPE-----------VAFTG 253
K ++ + G + +L + VE+ D ++ PE + +TG
Sbjct: 150 EDDRKGRFDRERAEELGVPVGPKFSRLHEGESVELEDGTVVDPEQVVGDSRPGRSIVYTG 209
Query: 254 DT-----TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI------ 302
DT T E +P +LI +ATF DD H + +I
Sbjct: 210 DTRPTEATIEVADDP--------DLLIHDATFADDRADRAAETAHATARQAAEIANRAGA 261
Query: 303 -RQAVLKLQSKVSAKVVPLTEGFKSVYTS 330
R A+L L S+ + E + V+
Sbjct: 262 DRLALLHLSSRYAGYTADHEEQAREVFAG 290
>gi|417999045|ref|ZP_12639258.1| ribonuclease Z [Lactobacillus casei T71499]
gi|410539985|gb|EKQ14507.1| ribonuclease Z [Lactobacillus casei T71499]
Length = 320
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 40/221 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR-GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DHI GLP ++ASR P TI+ P I++ V+ ++ +S + L
Sbjct: 59 VFITHLHGDHIFGLPGFLASRSNQGGTDPLTIYGPSGIEDFVKTSLKVSQSHLSYPLKFV 118
Query: 178 L-----VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
L VA + +T+++ D + H I S G+ I LL K++
Sbjct: 119 LLQHPGVAFE-DQTFKVTFD------RLDHRITSFGFRIEEKPHPGELLIDKVRAAKIPS 171
Query: 222 ---YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKI 273
Y LK + L + + P VA GDT M N A A +
Sbjct: 172 GPVYAALKAGETVTLPDGRIFDGHDFIGPAQPGRTVAIFGDTR---MCNRALPLAAGADV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS 314
L+ E+TF DE + A+Q+ H + +++ A L ++ V
Sbjct: 229 LVHESTFGPDESQL--AKQYYH---ATNVQAAALAKRAGVG 264
>gi|314933681|ref|ZP_07841046.1| ribonuclease Z [Staphylococcus caprae C87]
gi|313653831|gb|EFS17588.1| ribonuclease Z [Staphylococcus caprae C87]
Length = 307
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 45/235 (19%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTLIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
I+ +E ++ S LN + +++ + + ++ V+ +H I S GY I
Sbjct: 96 GIQNYIETSLKLSES----HLNYPITYIEINQQFTYHHEGFTVQAEVLNHGITSYGYRIE 151
Query: 213 LLRKKLKKQYIHLKGKQIE-KLKKSGVEITDIIL-----------------SPEVAFTGD 254
LK +E K V+I D P +A GD
Sbjct: 152 APTTPGTINVEALKSIGLEPGPKYQEVKIQDTFEHNGLMYQSDDFKGEAKPGPIIAIFGD 211
Query: 255 T---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAV 306
T +E++L +NAD +++ EAT+++ + ++ A + H+H+ +D+ Q +
Sbjct: 212 TKPCDNEYVL-AKNAD-----VMVHEATYIEGDKTL--ANNYHHSHI-DDVFQLI 257
>gi|229002771|ref|ZP_04160673.1| Zn-dependent hydrolase [Bacillus mycoides Rock3-17]
gi|229008525|ref|ZP_04165953.1| Zn-dependent hydrolase [Bacillus mycoides Rock1-4]
gi|228752749|gb|EEM02349.1| Zn-dependent hydrolase [Bacillus mycoides Rock1-4]
gi|228758486|gb|EEM07631.1| Zn-dependent hydrolase [Bacillus mycoides Rock3-17]
Length = 556
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 59/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D E N V F T H IP SQG ++Y K + I G
Sbjct: 120 KTIDSNSAVEF-NTTTVSFFGTTHSIPDSVGVCFHTSQGSIVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|308160032|gb|EFO62542.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia P15]
Length = 620
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 90/201 (44%), Gaps = 36/201 (17%)
Query: 99 ELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVA-----SRGLYNLKPPTIFVPP 153
+LKC D+G R + +F+ I+H H DH G LP + +R +Y + T F+ P
Sbjct: 56 KLKCLQDMGYSLERDL--DFIIISHAHFDHSGALPFLFSLFPNFNRPVYTTE-ATKFLLP 112
Query: 154 SIKEDVEKLFE-IHRSLGNVELNLDLVA-----LDVGETYEMRNDIV--VRPFKTHHVIP 205
+ D +++F+ ++S+ +E + + + +TY+ + V +P +T +P
Sbjct: 113 QMYADYDRVFDNTNQSMSKLEKQARTIEVRSRIISLLKTYKSNTNFVADCQPSRTGEPVP 172
Query: 206 SQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD--TTSEFMLNP 263
VI H+ G I + +G ++ +TGD TT+ L
Sbjct: 173 ET--VINFSNAG------HIIGAVITTITVAGYA--------KIVYTGDYNTTARTTLPG 216
Query: 264 RN--ADALRAKILITEATFLD 282
+ A+ A ILITE T+ +
Sbjct: 217 ATLPSCAIGADILITETTYCN 237
>gi|91774307|ref|YP_566999.1| beta-lactamase-like protein [Methanococcoides burtonii DSM 6242]
gi|91713322|gb|ABE53249.1| UPF0036 protein, beta-lactamase-like [Methanococcoides burtonii DSM
6242]
Length = 447
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 30/175 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPS---IKEDVEKLFEIHRSLGNVELN 175
+ THGHLDHIG +P + P I P + IK+ +E R G +
Sbjct: 78 IVCTHGHLDHIGAIPKLA-----HRYTAPIIGTPYTAALIKQQIES----ERKFG---VK 125
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQ---------GYVIYLLRKKLKKQYIHLK 226
++ ++ G TY++ +D+ + + H I G V+Y KL + +
Sbjct: 126 NKIIPIEAGGTYQINDDVSIELIRVQHSIIDAVFVAVHTPVGAVLYACDFKLDRTPTLGE 185
Query: 227 GKQIEKLKKSGVE--ITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEAT 279
E+L++ G E I I+ S G T SE + + D +R +L TE +
Sbjct: 186 APDFERLRELGKEGVICMIVESTNANRKGKTPSEQIAH----DMVRDVLLGTEES 236
>gi|417989605|ref|ZP_12630107.1| ribonuclease Z [Lactobacillus casei A2-362]
gi|410537698|gb|EKQ12268.1| ribonuclease Z [Lactobacillus casei A2-362]
Length = 320
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 40/221 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR-GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DHI GLP ++ASR P TI+ P I++ V+ ++ +S + L
Sbjct: 59 VFITHLHGDHIFGLPGFLASRSNQGGTDPLTIYGPSGIEDFVKTSLKVSQSHLSYPLKFI 118
Query: 178 L-----VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
L VA + +T+++ D + H I S G+ I LL K++
Sbjct: 119 LLQHPGVAFE-DQTFKVTFD------RLDHRITSFGFRIEEKPHPGELLIDKVRAAKIPS 171
Query: 222 ---YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKI 273
Y LK + L + + P VA GDT M N A A +
Sbjct: 172 GPVYAALKAGETVTLPDGRIFDGHDFIGPAQPGRTVAIFGDTR---MCNRALPLAAGADV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS 314
L+ E+TF DE + A+Q+ H + +++ A L ++ V
Sbjct: 229 LVHESTFGPDESQL--AKQYYH---ATNVQAAALAKRAGVG 264
>gi|229012980|ref|ZP_04170145.1| Zn-dependent hydrolase [Bacillus mycoides DSM 2048]
gi|423367785|ref|ZP_17345217.1| hypothetical protein IC3_02886 [Bacillus cereus VD142]
gi|423488920|ref|ZP_17465602.1| hypothetical protein IEU_03543 [Bacillus cereus BtB2-4]
gi|423494645|ref|ZP_17471289.1| hypothetical protein IEW_03543 [Bacillus cereus CER057]
gi|423498564|ref|ZP_17475181.1| hypothetical protein IEY_01791 [Bacillus cereus CER074]
gi|423598891|ref|ZP_17574891.1| hypothetical protein III_01693 [Bacillus cereus VD078]
gi|423661363|ref|ZP_17636532.1| hypothetical protein IKM_01760 [Bacillus cereus VDM022]
gi|228748234|gb|EEL98094.1| Zn-dependent hydrolase [Bacillus mycoides DSM 2048]
gi|401083199|gb|EJP91461.1| hypothetical protein IC3_02886 [Bacillus cereus VD142]
gi|401151706|gb|EJQ59152.1| hypothetical protein IEW_03543 [Bacillus cereus CER057]
gi|401159222|gb|EJQ66607.1| hypothetical protein IEY_01791 [Bacillus cereus CER074]
gi|401237161|gb|EJR43618.1| hypothetical protein III_01693 [Bacillus cereus VD078]
gi|401301404|gb|EJS06993.1| hypothetical protein IKM_01760 [Bacillus cereus VDM022]
gi|402433275|gb|EJV65329.1| hypothetical protein IEU_03543 [Bacillus cereus BtB2-4]
Length = 556
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NSTNVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|47568203|ref|ZP_00238907.1| metallo-beta-lactamase, AtsA/ElaC family [Bacillus cereus G9241]
gi|47555193|gb|EAL13540.1| metallo-beta-lactamase, AtsA/ElaC family [Bacillus cereus G9241]
Length = 307
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + T N+ V + H I GY I
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRI 150
>gi|417983422|ref|ZP_12624060.1| ribonuclease Z [Lactobacillus casei 21/1]
gi|417992863|ref|ZP_12633215.1| ribonuclease Z [Lactobacillus casei CRF28]
gi|417996211|ref|ZP_12636494.1| ribonuclease Z [Lactobacillus casei M36]
gi|418001983|ref|ZP_12642110.1| ribonuclease Z [Lactobacillus casei UCD174]
gi|418013698|ref|ZP_12653335.1| ribonuclease Z [Lactobacillus casei Lpc-37]
gi|410528368|gb|EKQ03221.1| ribonuclease Z [Lactobacillus casei 21/1]
gi|410532654|gb|EKQ07356.1| ribonuclease Z [Lactobacillus casei CRF28]
gi|410535920|gb|EKQ10530.1| ribonuclease Z [Lactobacillus casei M36]
gi|410545134|gb|EKQ19439.1| ribonuclease Z [Lactobacillus casei UCD174]
gi|410555577|gb|EKQ29515.1| ribonuclease Z [Lactobacillus casei Lpc-37]
Length = 320
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 40/221 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR-GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DHI GLP ++ASR P TI+ P I++ V+ ++ +S + L
Sbjct: 59 VFITHLHGDHIFGLPGFLASRSNQGGTDPLTIYGPSGIEDFVKTSLKVSQSHLSYPLKFV 118
Query: 178 L-----VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
L VA + +T+++ D + H I S G+ I LL K++
Sbjct: 119 LLQHPGVAFE-DQTFKVTFD------RLDHRITSFGFRIEEKPHPGELLIDKVRAAKIPS 171
Query: 222 ---YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKI 273
Y LK + L + + P VA GDT M N A A +
Sbjct: 172 GPVYAALKAGETVTLPDGRIFDGHDFIGPAQPGRTVAIFGDTR---MCNRALPLAAGADV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS 314
L+ E+TF DE + A+Q+ H + +++ A L ++ V
Sbjct: 229 LVHESTFGPDESQL--AKQYYH---ATNVQAAALAKRAGVG 264
>gi|423669372|ref|ZP_17644401.1| hypothetical protein IKO_03069 [Bacillus cereus VDM034]
gi|423674500|ref|ZP_17649439.1| hypothetical protein IKS_02043 [Bacillus cereus VDM062]
gi|401298499|gb|EJS04099.1| hypothetical protein IKO_03069 [Bacillus cereus VDM034]
gi|401310051|gb|EJS15384.1| hypothetical protein IKS_02043 [Bacillus cereus VDM062]
Length = 556
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NSTNVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|378756880|gb|EHY66904.1| cleavage and polyadenylation specificity factor subunit 3
[Nematocida sp. 1 ERTm2]
Length = 501
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYN----LKPPTIFVPPSIKEDVEKLFEIHRSLG-- 170
+ V ITH H+DH GGLP Y R Y + PPT V P I +D K++
Sbjct: 58 DCVIITHFHMDHCGGLP-YFTERCKYAGPIYMTPPTKAVLPIILQDYCKVYNERDDSSKF 116
Query: 171 --------NVELNL-DLVALDVGETYEMRNDIVVRPFKTHHVI 204
N++ + ++ + + ET E+ D + P+ HV+
Sbjct: 117 QYPTYNEENIKACMKKVIPIAMDETVEIEKDFTITPYYAGHVL 159
>gi|242373804|ref|ZP_04819378.1| ribonuclease Z [Staphylococcus epidermidis M23864:W1]
gi|242348541|gb|EES40143.1| ribonuclease Z [Staphylococcus epidermidis M23864:W1]
Length = 306
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 42/224 (18%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTLIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVI- 211
I+ +E ++ S LN + +++ + + ++ V+ +H I S GY I
Sbjct: 96 GIQNYIETSLKLSES----HLNYPITYIEINQQFTYHHEGFTVKAELLNHGITSYGYRIE 151
Query: 212 ------YLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIIL-----------SPEVAFTGD 254
+ + LK ++ K E + E ++ P VA GD
Sbjct: 152 APTTPGTIDVEALKAIGLNPGPKYQEVKVQDTFEHNGLMYQSSDFKGAAKPGPVVAIFGD 211
Query: 255 T---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
T +E++L A A ++I E+T+++ E ++ + H H
Sbjct: 212 TKPCDNEYIL------AQDADVMIHESTYIEGEKTLANNYHHSH 249
>gi|229061400|ref|ZP_04198745.1| Zn-dependent hydrolase [Bacillus cereus AH603]
gi|228717823|gb|EEL69471.1| Zn-dependent hydrolase [Bacillus cereus AH603]
Length = 556
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NSTNVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|227535164|ref|ZP_03965213.1| ribonuclease Z [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|227187209|gb|EEI67276.1| ribonuclease Z [Lactobacillus paracasei subsp. paracasei ATCC
25302]
Length = 320
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 40/221 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR-GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DHI GLP ++ASR P TI+ P I++ V+ ++ +S + L
Sbjct: 59 VFITHLHGDHIFGLPGFLASRSNQGGTDPLTIYGPSGIEDFVKTSLKVSQSHLSYPLKFV 118
Query: 178 L-----VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
L VA + +T+++ D + H I S G+ I LL K++
Sbjct: 119 LLQHPGVAFE-DQTFKVTFD------RLDHRITSFGFRIEEKPHPGELLIDKVRAAKIPS 171
Query: 222 ---YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKI 273
Y LK + L + + P VA GDT M N A A +
Sbjct: 172 GPVYAALKAGETVTLPDGRIFDGHDFIGPAQPGRTVAIFGDTR---MCNRALPLAAGADV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS 314
L+ E+TF DE + A+Q+ H + +++ A L ++ V
Sbjct: 229 LVHESTFGPDESQL--AKQYYH---ATNVQAAALAKRAGVG 264
>gi|170721023|ref|YP_001748711.1| ribonuclease Z [Pseudomonas putida W619]
gi|254808655|sp|B1J6H3.1|RNZ_PSEPW RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|169759026|gb|ACA72342.1| Ribonuclease Z [Pseudomonas putida W619]
Length = 321
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE--LNL 176
+FITH H DH GLP +AS G+ P V P+ D +L SL + L
Sbjct: 58 IFITHVHGDHCFGLPGLLASAGMSGRTAPLDLVLPAALHDWVRL-----SLAASDSFLPF 112
Query: 177 DLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVI 211
+L L V + E R+D + V + H +PS +V
Sbjct: 113 ELRLLAVEQLGEWRSDTLAVSTVQLSHRVPSVAFVF 148
>gi|49478558|ref|YP_038206.1| ribonuclease Z [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|118479338|ref|YP_896489.1| ribonuclease Z [Bacillus thuringiensis str. Al Hakam]
gi|196038730|ref|ZP_03106038.1| ribonuclease Z [Bacillus cereus NVH0597-99]
gi|196047233|ref|ZP_03114449.1| ribonuclease Z [Bacillus cereus 03BB108]
gi|225866126|ref|YP_002751504.1| ribonuclease Z [Bacillus cereus 03BB102]
gi|228916781|ref|ZP_04080346.1| Ribonuclease Z [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|229093204|ref|ZP_04224322.1| Ribonuclease Z [Bacillus cereus Rock3-42]
gi|229186388|ref|ZP_04313552.1| Ribonuclease Z [Bacillus cereus BGSC 6E1]
gi|301055637|ref|YP_003793848.1| ribonuclease Z [Bacillus cereus biovar anthracis str. CI]
gi|376268042|ref|YP_005120754.1| Ribonuclease Z [Bacillus cereus F837/76]
gi|423550109|ref|ZP_17526436.1| ribonuclease Z [Bacillus cereus ISP3191]
gi|56749430|sp|Q6HE20.1|RNZ_BACHK RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|166991094|sp|A0RID9.1|RNZ_BACAH RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808609|sp|C1ER14.1|RNZ_BACC3 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|49330114|gb|AAT60760.1| possible metallo-beta-lactamase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118418563|gb|ABK86982.1| RNAse Z [Bacillus thuringiensis str. Al Hakam]
gi|196021982|gb|EDX60673.1| ribonuclease Z [Bacillus cereus 03BB108]
gi|196030453|gb|EDX69052.1| ribonuclease Z [Bacillus cereus NVH0597-99]
gi|225787461|gb|ACO27678.1| ribonuclease Z [Bacillus cereus 03BB102]
gi|228597015|gb|EEK54671.1| Ribonuclease Z [Bacillus cereus BGSC 6E1]
gi|228690178|gb|EEL43972.1| Ribonuclease Z [Bacillus cereus Rock3-42]
gi|228842968|gb|EEM88051.1| Ribonuclease Z [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|300377806|gb|ADK06710.1| ribonuclease Z [Bacillus cereus biovar anthracis str. CI]
gi|364513842|gb|AEW57241.1| Ribonuclease Z [Bacillus cereus F837/76]
gi|401189725|gb|EJQ96775.1| ribonuclease Z [Bacillus cereus ISP3191]
Length = 307
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 42/228 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPLFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK ++ +L+ + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTILNGNDFIGPPQKGRVITILGDT--------RYCEASRELAQDADV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
L+ EATF ++ +Q + + +QA + + +AK + LT
Sbjct: 229 LVHEATFAAED------EQQAYDYFHSTSKQAA-SIALQANAKRLILT 269
>gi|448583274|ref|ZP_21646630.1| metal dependent hydrolase [Haloferax gibbonsii ATCC 33959]
gi|445729503|gb|ELZ81098.1| metal dependent hydrolase [Haloferax gibbonsii ATCC 33959]
Length = 248
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
V +TH HLDH+ L V +R L I P ++ VE LF++H L LD+
Sbjct: 56 VLLTHHHLDHVSDLMALVKARWLAGQDRLEIVGPEGTEDLVEGLFDVHDYLKG---RLDV 112
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
+VG T V F+ H +P+ Y
Sbjct: 113 QVREVGPTEFGVAGFDVMGFEVRHSMPTLAY 143
>gi|418005055|ref|ZP_12645055.1| ribonuclease Z [Lactobacillus casei UW1]
gi|418007947|ref|ZP_12647818.1| ribonuclease Z [Lactobacillus casei UW4]
gi|410547706|gb|EKQ21932.1| ribonuclease Z [Lactobacillus casei UW4]
gi|410548052|gb|EKQ22272.1| ribonuclease Z [Lactobacillus casei UW1]
Length = 320
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 40/221 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR-GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DHI GLP ++ASR P TI+ P I++ V+ ++ +S + L
Sbjct: 59 VFITHLHGDHIFGLPGFLASRSNQGGTDPLTIYGPSGIEDFVKTSLKVSQSHLSYPLKFV 118
Query: 178 L-----VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
L VA + +T+++ D + H I S G+ I LL K++
Sbjct: 119 LLQHPGVAFE-DQTFKVTFD------RLDHRITSFGFRIEEKPHPGELLIDKVRAAKIPS 171
Query: 222 ---YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKI 273
Y LK + L + + P VA GDT M N A A +
Sbjct: 172 GPVYAALKAGETVTLPDGRIFDGHDFIGPAQPGRTVAIFGDTR---MCNRALPLAAGADV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS 314
L+ E+TF DE + A+Q+ H + +++ A L ++ V
Sbjct: 229 LVHESTFGPDESQL--AKQYYH---ATNVQAAALAKRAGVG 264
>gi|335357164|ref|ZP_08549034.1| ribonuclease Z [Lactobacillus animalis KCTC 3501]
Length = 316
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 17/121 (14%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G R R + + +FITH H DHI GLP +++SR G L+P TI+ P
Sbjct: 36 FDVGEGTQHQILRTTIRPRKVDKIFITHLHGDHIFGLPGFLSSRSFQGGEELRPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVAL-DVGETYEMRNDIVVRPF-KTHHVIPSQGYV 210
I + V ++ ++ ++ L V L D G +E ND F + H I GY
Sbjct: 96 KGIADFVRISLKVSQT--HLSYPLRFVELADEGVIFE--NDKFKVSFCRLDHRIECVGYR 151
Query: 211 I 211
I
Sbjct: 152 I 152
>gi|399517470|ref|ZP_10759020.1| Ribonuclease Z [Leuconostoc pseudomesenteroides 4882]
gi|398647594|emb|CCJ67047.1| Ribonuclease Z [Leuconostoc pseudomesenteroides 4882]
Length = 318
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 34/222 (15%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + + FI+H H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTIRPRKVEKIFISHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVI 211
IK+ V+ + + + ++ VAL G ++ ++ P + H I + G+ +
Sbjct: 96 KGIKDFVQTALRVSET--RLSYPINYVALQEGIIFDDPTFQVIAAPMR--HRIETWGFRV 151
Query: 212 Y-------LLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPEVAFTGDTTS----EF 259
LL KL+ + I G +LK V + D + + G+T
Sbjct: 152 VEKDHPGELLVDKLRAENIP-SGPIYGRLKAGKTVTLADGRTISGLDYIGETQKGRVVTL 210
Query: 260 MLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHT 296
+L+ R D A A +L+ E+T+ + + A+ H H+
Sbjct: 211 ILDTRPNDNIALLAHHADVLVHESTYGASDEESKMARAHAHS 252
>gi|423401010|ref|ZP_17378183.1| ribonuclease Z [Bacillus cereus BAG2X1-2]
gi|423478286|ref|ZP_17455001.1| ribonuclease Z [Bacillus cereus BAG6X1-1]
gi|401654000|gb|EJS71543.1| ribonuclease Z [Bacillus cereus BAG2X1-2]
gi|402428448|gb|EJV60545.1| ribonuclease Z [Bacillus cereus BAG6X1-1]
Length = 307
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + T N+ V + H I GY I
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRI 150
>gi|339450329|ref|ZP_08653699.1| beta-lactamase superfamily hydrolase [Leuconostoc lactis KCTC 3528]
Length = 212
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 119 VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FI+H H DHI GLP +++SR G +P TI+ P IK+ V+ + + +
Sbjct: 59 IFISHLHGDHIFGLPGFLSSRSFQGADKHEPLTIYGPKGIKDFVQTALRVSET--RLSYP 116
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYI 223
L V L G ++ R V+ K H I + G+ + LL +KL++Q +
Sbjct: 117 LVYVELTEGVIFDDRTFRVIAA-KMRHRIDTWGFRVEEKDHPGELLVEKLREQNV 170
>gi|253579742|ref|ZP_04857010.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848741|gb|EES76703.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 302
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 39/220 (17%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ + TH H DHI GLP + + G + P V P + +E++ R + EL
Sbjct: 55 DVICFTHYHGDHISGLPGLLLTMGNADRTEPLTLVGP---KGLERVVNALRVIAP-ELPF 110
Query: 177 DLVALDVGETYEM--RNDIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHL--- 225
++ +++ + ++ N + FK +H + GY + +LR+ + K+Q I L
Sbjct: 111 EIKFIEITQPEQVIELNGYRITAFKVNHNVLCYGYTLEILRQGKFSAERAKEQDIPLKYW 170
Query: 226 ----KGKQIEKLKKSGVEIT-DIILSP-----EVAFTGDT--TSEFMLNPRNADALRAKI 273
KG+ IE G+ T +++L P + +T DT T + N + +D +
Sbjct: 171 NPLQKGQTIE---ADGITYTPEMVLGPARKGIRLTYTTDTRPTESILRNAKESD-----L 222
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
I E + +D+ + + A+ + H E AVL ++V
Sbjct: 223 FICEGMYGEDDKA-DKARGYKHMTFRE---AAVLARDARV 258
>gi|104773888|ref|YP_618868.1| beta-lactamase hydrolase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116513895|ref|YP_812801.1| beta-lactamase superfamily hydrolase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|418029478|ref|ZP_12668016.1| Ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
gi|418036513|ref|ZP_12674929.1| Ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|122275335|sp|Q04B09.1|RNZ_LACDB RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|123251929|sp|Q1GAM2.1|RNZ_LACDA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|103422969|emb|CAI97642.1| Putative hydrolase (beta-lactamase superfamily III) [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|116093210|gb|ABJ58363.1| RNAse Z [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|354687563|gb|EHE87643.1| Ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|354689784|gb|EHE89757.1| Ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
Length = 309
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 21/180 (11%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++R ++ P TI+ P I++ V+ I ++ + +
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGIEQFVKTSLRISKT--KISYPIK 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
V L+ G V K H I S G+ + LL KL ++ G +
Sbjct: 117 FVTLEEGGKIVSERGFEVYTEKLDHRIDSWGFRMVEADKAGELLMDKL-AEFKVPNGPLL 175
Query: 231 EKLKKS-GVEITDIILSPEVAFTGDTTS----EFMLNPRNADALR-----AKILITEATF 280
KLK+ VE+ D + F G + + R+ ++R A +L+ EATF
Sbjct: 176 GKLKRGEQVELADGTVLNGKDFLGPAKKGRVVTVIYDTRSTPSIRRLADHADVLVHEATF 235
>gi|423604221|ref|ZP_17580114.1| ribonuclease Z [Bacillus cereus VD102]
gi|401245907|gb|EJR52260.1| ribonuclease Z [Bacillus cereus VD102]
Length = 307
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + T N+ V + H I GY I
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRI 150
>gi|229174819|ref|ZP_04302340.1| Ribonuclease Z [Bacillus cereus MM3]
gi|423457672|ref|ZP_17434469.1| ribonuclease Z [Bacillus cereus BAG5X2-1]
gi|228608651|gb|EEK65952.1| Ribonuclease Z [Bacillus cereus MM3]
gi|401148056|gb|EJQ55549.1| ribonuclease Z [Bacillus cereus BAG5X2-1]
Length = 307
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + T N+ V + H I GY I
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRI 150
>gi|163941484|ref|YP_001646368.1| beta-lactamase domain-containing protein [Bacillus
weihenstephanensis KBAB4]
gi|163863681|gb|ABY44740.1| beta-lactamase domain protein [Bacillus weihenstephanensis KBAB4]
Length = 556
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NSTNVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|420147319|ref|ZP_14654595.1| Ribonuclease Z [Lactobacillus gasseri CECT 5714]
gi|398401320|gb|EJN54822.1| Ribonuclease Z [Lactobacillus gasseri CECT 5714]
Length = 309
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++SR + P TI+ P I++ V+ ++ R+ V +
Sbjct: 59 IFISHTHGDHIFGLPGFLSSRSFQGDGGPLTIYGPAGIEQFVQTSLKVSRT--RVSYPIK 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
V L N V + H +PS G+ +
Sbjct: 117 YVVLKEDGLIFENNLFAVYTARLDHRVPSFGFRV 150
>gi|229198271|ref|ZP_04324978.1| Ribonuclease Z [Bacillus cereus m1293]
gi|402555728|ref|YP_006596999.1| ribonuclease Z [Bacillus cereus FRI-35]
gi|423574169|ref|ZP_17550288.1| ribonuclease Z [Bacillus cereus MSX-D12]
gi|228585150|gb|EEK43261.1| Ribonuclease Z [Bacillus cereus m1293]
gi|401212738|gb|EJR19481.1| ribonuclease Z [Bacillus cereus MSX-D12]
gi|401796938|gb|AFQ10797.1| ribonuclease Z [Bacillus cereus FRI-35]
Length = 307
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + T N+ V + H I GY I
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRI 150
>gi|110669277|ref|YP_659088.1| ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Haloquadratum
walsbyi DSM 16790]
gi|109627024|emb|CAJ53500.1| ribonuclease Z [Haloquadratum walsbyi DSM 16790]
Length = 318
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 105/264 (39%), Gaps = 58/264 (21%)
Query: 101 KCAFDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVP 152
+ FD G R + + + +F+TH H DHI G+P + + + I P
Sbjct: 30 RLLFDCGEGTQRQMMRFGTGFSLSHIFVTHLHGDHILGIPGLIQTLDFNDRTDALAIHGP 89
Query: 153 PSIKEDVEKLFEIHRSLGNVELNL-----DLVALDVGETYEMRNDIVVRPFKT-HHVIPS 206
P K + L E +N+ VA+D E ++R F+T H + S
Sbjct: 90 PGSKPHLRHLVETAGYRPGYPINIREIRPGSVAVDTEE-------YIIRSFETSHRGVTS 142
Query: 207 QGYVIYLLRKKLKKQYIHLK------GKQIEKLKKS-GVEITD-IILSPE---------- 248
GY + +K + + G + +L V++ D I+ PE
Sbjct: 143 IGYALIESDRKGRFNRDRAESLGVPVGPKFGRLHDGESVKLADGSIVHPEQVVGDSRPGR 202
Query: 249 -VAFTGDT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE----- 300
V +TGDT T + NAD +L+ +ATF D S A+Q GH+ E
Sbjct: 203 RVVYTGDTRPTETTVEAANNAD-----LLVHDATFAADRAS--RAKQTGHSTAQEAAQIA 255
Query: 301 ---DIRQ-AVLKLQSKVSAKVVPL 320
D RQ A+ + S+ + V PL
Sbjct: 256 TRADARQLALTHVSSRYAGDVTPL 279
>gi|431803355|ref|YP_007230258.1| ribonuclease Z [Pseudomonas putida HB3267]
gi|430794120|gb|AGA74315.1| ribonuclease Z [Pseudomonas putida HB3267]
Length = 319
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 27/182 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH H DH GLP +AS G+ P V P+ D + + + L +L
Sbjct: 58 IFITHVHGDHCFGLPGLLASAGMSGRTQPLDLVLPAALHDWVRQGLV---ASDTFLPFEL 114
Query: 179 VALDVGETYEMRNDIV-VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSG 237
L V + E R+D + V + H +PS G+V L + + L+ + I + G
Sbjct: 115 RLLAVEDLVEWRSDALEVTSVQLSHRVPSVGFVFTELNPEPRLNIPRLEAEGIPRGPLWG 174
Query: 238 VEITDII-------------LSP-----EVAFTGDTTSEFMLNPRNADALR-AKILITEA 278
+ L P V GD + +L ADA R A +L+ EA
Sbjct: 175 ELAKGLTVQHGGRRLHGKDYLRPSRPPRRVIVCGDNDNPELL----ADAARGADVLVHEA 230
Query: 279 TF 280
TF
Sbjct: 231 TF 232
>gi|359796771|ref|ZP_09299364.1| metallo-beta-lactamase [Achromobacter arsenitoxydans SY8]
gi|359365217|gb|EHK66921.1| metallo-beta-lactamase [Achromobacter arsenitoxydans SY8]
Length = 297
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 77/190 (40%), Gaps = 34/190 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNLK-PPTIFVPPS 154
FD G TR + + FVF+TH H DHI P +V S + N + P + P
Sbjct: 34 FDCGEGATRQMVRANVDPAKVGFVFLTHLHHDHICDYPYFVISSWILNKEGSPLVLGPKG 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
K V+ LFE N + D A RN +RP + V P V++
Sbjct: 94 TKHFVDHLFE------NGAYHTDFQAR-AAYPVRQRNLEAMRP-EVREVKPG---VVF-- 140
Query: 215 RKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPE---VAFTGDTT-SEFMLNPRNADALR 270
+ + + +E + + E + + E +AF+GDT E M+ A
Sbjct: 141 ----EDDKVRISVDWVEHIPRDVCECFGVRVEAEGKVIAFSGDTAPCEAMVRL----AKD 192
Query: 271 AKILITEATF 280
A +LI E TF
Sbjct: 193 ADLLIHECTF 202
>gi|397164424|ref|ZP_10487879.1| ribonuclease Z [Enterobacter radicincitans DSM 16656]
gi|396093572|gb|EJI91127.1| ribonuclease Z [Enterobacter radicincitans DSM 16656]
Length = 305
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FITH H DH+ GLP + SR + N++P I+ P I+E VE + S + L +
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNVQPLDIYGPQGIREFVETTLRLSGSWTDYPLTI 118
>gi|257077192|ref|ZP_05571553.1| metal dependent hydrolase [Ferroplasma acidarmanus fer1]
Length = 252
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 47/191 (24%)
Query: 115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV-PPSIKEDVEKLFEIHRSLGNVE 173
Q + + I+H HLDH GGL + R K I + P I ++ E+L +I+ + +
Sbjct: 49 QVDKILISHMHLDHYGGLAEILWYRAAREAKDEVIILGPKGIMKNTEQLLKIYNTPDHYM 108
Query: 174 LNLDLVALDV---GETYE--------MRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQY 222
++ +++ GE YE ++ND + F +H IP Y
Sbjct: 109 FSMKSNYVEINNNGEIYEVKTKFTDKVKND-YIEAFTGNHSIPDNMY------------- 154
Query: 223 IHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLD 282
+L+ G VA+TGDT ++ +A I + E TF D
Sbjct: 155 ---------RLEYRG---------NTVAYTGDTAYNDNISQVGE---KADIFLHEMTFTD 193
Query: 283 DEMSIEHAQQH 293
++ I +H
Sbjct: 194 EDAEIAKLSKH 204
>gi|229031788|ref|ZP_04187777.1| Ribonuclease Z [Bacillus cereus AH1271]
gi|228729534|gb|EEL80522.1| Ribonuclease Z [Bacillus cereus AH1271]
Length = 307
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + T N+ V + H I GY I
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRI 150
>gi|116629529|ref|YP_814701.1| beta-lactamase superfamily hydrolase [Lactobacillus gasseri ATCC
33323]
gi|238852679|ref|ZP_04643089.1| ribonuclease Z [Lactobacillus gasseri 202-4]
gi|311110829|ref|ZP_07712226.1| ribonuclease Z [Lactobacillus gasseri MV-22]
gi|122273533|sp|Q043V9.1|RNZ_LACGA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|116095111|gb|ABJ60263.1| RNAse Z [Lactobacillus gasseri ATCC 33323]
gi|238834825|gb|EEQ27052.1| ribonuclease Z [Lactobacillus gasseri 202-4]
gi|311065983|gb|EFQ46323.1| ribonuclease Z [Lactobacillus gasseri MV-22]
Length = 309
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++SR + P TI+ P I++ V+ ++ R+ V +
Sbjct: 59 IFISHTHGDHIFGLPGFLSSRSFQGDGGPLTIYGPAGIEQFVQTSLKVSRT--RVSYPIK 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
V L N V + H +PS G+ +
Sbjct: 117 YVVLKEDGLIFENNLFAVYTARLDHRVPSFGFRV 150
>gi|423615521|ref|ZP_17591355.1| ribonuclease Z [Bacillus cereus VD115]
gi|401260058|gb|EJR66231.1| ribonuclease Z [Bacillus cereus VD115]
Length = 307
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 87/213 (40%), Gaps = 41/213 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTKLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ-------YI 223
+V + T N+ V K H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFYVETKKLSHGIECFGYRIVEKDIQGVLLVDKLLEMGVKPGPIFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK ++ +L+ + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDT--------RYCEASRELAQDADV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEDIRQAV 306
L+ EATF ++ +Q H + +QA
Sbjct: 229 LVHEATFAAED------EQQAHDYFHSTSKQAA 255
>gi|52141354|ref|YP_085475.1| ribonuclease Z [Bacillus cereus E33L]
gi|76363372|sp|Q635E2.1|RNZ_BACCZ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|51974823|gb|AAU16373.1| possible metallo-beta-lactamase [Bacillus cereus E33L]
Length = 307
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + T N+ V + H I GY I
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRI 150
>gi|282852090|ref|ZP_06261448.1| ribonuclease Z [Lactobacillus gasseri 224-1]
gi|282556850|gb|EFB62454.1| ribonuclease Z [Lactobacillus gasseri 224-1]
Length = 309
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++SR + P TI+ P I++ V+ ++ R+ V +
Sbjct: 59 IFISHTHGDHIFGLPGFLSSRSFQGDGGPLTIYGPAGIEQFVQTSLKVSRT--RVSYPIK 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
V L N V + H +PS G+ +
Sbjct: 117 YVVLKEDGLIFENNLFAVYTARLDHRVPSFGFRV 150
>gi|315038180|ref|YP_004031748.1| ribonuclease Z [Lactobacillus amylovorus GRL 1112]
gi|325956632|ref|YP_004292044.1| ribonuclease Z [Lactobacillus acidophilus 30SC]
gi|385817519|ref|YP_005853909.1| ribonuclease Z [Lactobacillus amylovorus GRL1118]
gi|312276313|gb|ADQ58953.1| ribonuclease Z [Lactobacillus amylovorus GRL 1112]
gi|325333197|gb|ADZ07105.1| ribonuclease Z [Lactobacillus acidophilus 30SC]
gi|327183457|gb|AEA31904.1| ribonuclease Z [Lactobacillus amylovorus GRL1118]
Length = 311
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 89/225 (39%), Gaps = 47/225 (20%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP +++R ++ P TI+ P
Sbjct: 36 FDVGEATQHQILRTNIRLRKITKIFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAG 95
Query: 155 IKEDVEKLFEIHRS-----LGNVELNL-DLVALDVG-ETYEMRNDIVVRPFKTHHVIPSQ 207
I++ V +I R+ + VEL+ L+ D G Y R D H IPS
Sbjct: 96 IEQFVRTSLQISRTKVSYPIKFVELSEPGLICEDKGFRVYTDRLD---------HRIPSF 146
Query: 208 GYVIY-------LLRKKLKKQYI-------HLKGKQIEKLKKSGVEITDIILSPE----- 248
G+ + LL KL K I LK + L V L PE
Sbjct: 147 GFRVVEATHPGELLIDKLAKYNIPNGPILGQLKRGEQVTLADGTVLNGKDFLGPEKPGRI 206
Query: 249 VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQH 293
V DT S + D A +L+ E+TF DE + H
Sbjct: 207 VTIIYDTRSTPSIARLAKD---ADVLVHESTFAGDESKMARNYYH 248
>gi|30264217|ref|NP_846594.1| ribonuclease Z [Bacillus anthracis str. Ames]
gi|47529660|ref|YP_021009.1| ribonuclease Z [Bacillus anthracis str. 'Ames Ancestor']
gi|49187047|ref|YP_030299.1| ribonuclease Z [Bacillus anthracis str. Sterne]
gi|65321533|ref|ZP_00394492.1| COG1234: Metal-dependent hydrolases of the beta-lactamase
superfamily III [Bacillus anthracis str. A2012]
gi|165871127|ref|ZP_02215777.1| ribonuclease Z [Bacillus anthracis str. A0488]
gi|167633571|ref|ZP_02391895.1| ribonuclease Z [Bacillus anthracis str. A0442]
gi|167639504|ref|ZP_02397775.1| ribonuclease Z [Bacillus anthracis str. A0193]
gi|170687270|ref|ZP_02878488.1| ribonuclease Z [Bacillus anthracis str. A0465]
gi|170705861|ref|ZP_02896324.1| ribonuclease Z [Bacillus anthracis str. A0389]
gi|177652639|ref|ZP_02935055.1| ribonuclease Z [Bacillus anthracis str. A0174]
gi|190566047|ref|ZP_03018966.1| ribonuclease Z [Bacillus anthracis str. Tsiankovskii-I]
gi|196034932|ref|ZP_03102339.1| ribonuclease Z [Bacillus cereus W]
gi|218905280|ref|YP_002453114.1| ribonuclease Z [Bacillus cereus AH820]
gi|227816920|ref|YP_002816929.1| ribonuclease Z [Bacillus anthracis str. CDC 684]
gi|228929191|ref|ZP_04092218.1| Ribonuclease Z [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228935464|ref|ZP_04098282.1| Ribonuclease Z [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228947861|ref|ZP_04110148.1| Ribonuclease Z [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|229123664|ref|ZP_04252859.1| Ribonuclease Z [Bacillus cereus 95/8201]
gi|229600192|ref|YP_002868439.1| ribonuclease Z [Bacillus anthracis str. A0248]
gi|254683907|ref|ZP_05147767.1| ribonuclease Z [Bacillus anthracis str. CNEVA-9066]
gi|254721742|ref|ZP_05183531.1| ribonuclease Z [Bacillus anthracis str. A1055]
gi|254736255|ref|ZP_05193961.1| ribonuclease Z [Bacillus anthracis str. Western North America
USA6153]
gi|254744144|ref|ZP_05201827.1| ribonuclease Z [Bacillus anthracis str. Kruger B]
gi|254754073|ref|ZP_05206108.1| ribonuclease Z [Bacillus anthracis str. Vollum]
gi|254758234|ref|ZP_05210261.1| ribonuclease Z [Bacillus anthracis str. Australia 94]
gi|386738036|ref|YP_006211217.1| Ribonuclease Z [Bacillus anthracis str. H9401]
gi|421506406|ref|ZP_15953329.1| ribonuclease Z [Bacillus anthracis str. UR-1]
gi|421638225|ref|ZP_16078821.1| ribonuclease Z [Bacillus anthracis str. BF1]
gi|41017543|sp|Q81M88.1|RNZ_BACAN RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808605|sp|C3P7S4.1|RNZ_BACAA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808606|sp|C3LJR8.1|RNZ_BACAC RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808607|sp|B7JLZ5.1|RNZ_BACC0 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|30258862|gb|AAP28080.1| ribonuclease Z [Bacillus anthracis str. Ames]
gi|47504808|gb|AAT33484.1| ribonuclease Z [Bacillus anthracis str. 'Ames Ancestor']
gi|49180974|gb|AAT56350.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
Sterne]
gi|164713046|gb|EDR18573.1| ribonuclease Z [Bacillus anthracis str. A0488]
gi|167512563|gb|EDR87938.1| ribonuclease Z [Bacillus anthracis str. A0193]
gi|167530977|gb|EDR93664.1| ribonuclease Z [Bacillus anthracis str. A0442]
gi|170129401|gb|EDS98265.1| ribonuclease Z [Bacillus anthracis str. A0389]
gi|170668887|gb|EDT19632.1| ribonuclease Z [Bacillus anthracis str. A0465]
gi|172081974|gb|EDT67042.1| ribonuclease Z [Bacillus anthracis str. A0174]
gi|190562966|gb|EDV16932.1| ribonuclease Z [Bacillus anthracis str. Tsiankovskii-I]
gi|195992471|gb|EDX56432.1| ribonuclease Z [Bacillus cereus W]
gi|218539378|gb|ACK91776.1| ribonuclease Z [Bacillus cereus AH820]
gi|227005393|gb|ACP15136.1| ribonuclease Z [Bacillus anthracis str. CDC 684]
gi|228659799|gb|EEL15444.1| Ribonuclease Z [Bacillus cereus 95/8201]
gi|228811848|gb|EEM58182.1| Ribonuclease Z [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228824216|gb|EEM70030.1| Ribonuclease Z [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228830481|gb|EEM76091.1| Ribonuclease Z [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|229264600|gb|ACQ46237.1| ribonuclease Z [Bacillus anthracis str. A0248]
gi|384387888|gb|AFH85549.1| Ribonuclease Z [Bacillus anthracis str. H9401]
gi|401823399|gb|EJT22546.1| ribonuclease Z [Bacillus anthracis str. UR-1]
gi|403394651|gb|EJY91891.1| ribonuclease Z [Bacillus anthracis str. BF1]
Length = 307
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V + T N+ V + H I GY I
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRI 150
>gi|424780404|ref|ZP_18207277.1| Ribonuclease Z [Catellicoccus marimammalium M35/04/3]
gi|422842806|gb|EKU27253.1| Ribonuclease Z [Catellicoccus marimammalium M35/04/3]
Length = 322
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 87/207 (42%), Gaps = 42/207 (20%)
Query: 117 NFVFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV 172
N +FITH H DHI GLP ++SR G NL I+ P IK+ VE +I S +
Sbjct: 57 NKIFITHLHGDHIFGLPGLLSSRSFQGGDENL---VIYGPKGIKKFVETTLKISES--RL 111
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTH-----HVIPSQGYVIY-------LLRKKLKK 220
+ V LD E ++ I + FK H I S GY I LL K+K
Sbjct: 112 SYKISYVELDAFEG--VKTIIDNKKFKVEVALLDHRIHSFGYRIIEKDLPGELLIDKVKA 169
Query: 221 Q-------YIHLKGKQIEKLKKS-GVEITDIILSPE----VAFTGDT--TSEFMLNPRNA 266
Y LK +I L+ + D I P+ V GDT T + ++A
Sbjct: 170 ANIPQGPVYSQLKKGEIVTLEDGRTFDGKDFIGQPKKGRIVTILGDTRKTPNVEILAKDA 229
Query: 267 DALRAKILITEATFLDDEMSIEHAQQH 293
D +L+ E+TF DE + H
Sbjct: 230 D-----VLVHESTFGKDEQKLAANYYH 251
>gi|423124990|ref|ZP_17112669.1| ribonuclease Z [Klebsiella oxytoca 10-5250]
gi|376400435|gb|EHT13048.1| ribonuclease Z [Klebsiella oxytoca 10-5250]
Length = 306
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRS-----LG 170
N +FITH H DH+ GLP + SR + N P T++ P +KE VE + S L
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNTLPLTLYGPKGLKEFVETALRLSGSWTDYPLA 117
Query: 171 NVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
VE+ LV + G V + +H + GY I
Sbjct: 118 IVEVEPGLVLDEAG--------FRVTAWPLNHPVECYGYRI 150
>gi|149179289|ref|ZP_01857851.1| hypothetical protein PM8797T_00472 [Planctomyces maris DSM 8797]
gi|148841863|gb|EDL56264.1| hypothetical protein PM8797T_00472 [Planctomyces maris DSM 8797]
Length = 244
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 91 HETCVIIPELKCAFDIGRCPTRAIQQNF------VFITHGHLDHIGGLPMYV 136
H C+++PEL FD G R +QQ +F+TH HLDHI GL ++
Sbjct: 18 HTACLMLPELGLIFDAGTSFFR-VQQFLQTRDLQIFLTHAHLDHIVGLSFFL 68
>gi|365971433|ref|YP_004952995.1| ribonuclease Z [Enterobacter cloacae EcWSU1]
gi|365750346|gb|AEW74573.1| Ribonuclease Z [Enterobacter cloacae EcWSU1]
Length = 341
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGN-----V 172
+FITH H DH+ GLP + SR + N P TI+ P I+E V+ + S + V
Sbjct: 96 IFITHLHGDHLFGLPGLLCSRSMAGNANPLTIYGPAGIREFVDTTLRLSGSWTDYPLEVV 155
Query: 173 ELNLDLVALDVG 184
E+ LV LD G
Sbjct: 156 EITAGLV-LDDG 166
>gi|328766828|gb|EGF76880.1| hypothetical protein BATDEDRAFT_14507, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 475
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 40/177 (22%)
Query: 117 NFVFITHGHLDHIGGLPMY---VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
+ V I+H HLDH G LP + G + PT + P + ED+ K+ + +
Sbjct: 66 DCVIISHFHLDHCGALPYFTEICGYDGPIYMTGPTKAIAPILLEDMRKVVVERKGETDFF 125
Query: 174 LNLDL-------VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK 226
++D+ +A+++ ET ++ + +RP+ HV+ G ++ +R
Sbjct: 126 TSVDIKNCMQKVIAVNLMETVQVDAQLEIRPYYAGHVL---GAAMFYVR----------- 171
Query: 227 GKQIEKLKKSGVEITD-IILSPEVAFTGD--TTSEFMLNPRNADALRAKILITEATF 280
+TD ++ V +TGD T + L D ++ITE T+
Sbjct: 172 -------------VTDGYGVTQSVVYTGDYNMTPDRHLGAAQIDGCEPDLIITETTY 215
>gi|325958402|ref|YP_004289868.1| Ribonuclease Z [Methanobacterium sp. AL-21]
gi|325329834|gb|ADZ08896.1| Ribonuclease Z [Methanobacterium sp. AL-21]
Length = 302
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 100/229 (43%), Gaps = 40/229 (17%)
Query: 104 FDIG----RCPTRA----IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R TRA ++ + +F+TH H DHI G+P + S + I+ PP
Sbjct: 33 FDCGEGTQRQMTRARLSPMKIDRIFVTHFHGDHILGIPGLIQSMAFRGRRDTLEIYGPPG 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGE-TYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
I+E L + LG L+ ++ ++ + T +D + H + + Y I
Sbjct: 93 IQE----LLNSMKKLGYFALSFNIAVHEIKDGTVLEEDDFKISAQLMKHSVENYAYCIEE 148
Query: 214 LR--KKLKKQYIHLK---GKQIEKLKKSG--VEITDIILSPE-----------VAFTGDT 255
R K +K++ + L G KL +SG V+I + I+ PE + ++GDT
Sbjct: 149 KRDPKFIKEKALKLGIKPGPAYGKL-QSGLPVKIGNKIIKPEEVLGEKRRGRKLVYSGDT 207
Query: 256 TS--EFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
+ E + ++AD +LI E+TF + H ++ DI
Sbjct: 208 LACEEMVGFSKDAD-----VLIHESTFNNSHKEKAFETGHSTAEMAADI 251
>gi|423522372|ref|ZP_17498845.1| hypothetical protein IGC_01755 [Bacillus cereus HuA4-10]
gi|401175066|gb|EJQ82269.1| hypothetical protein IGC_01755 [Bacillus cereus HuA4-10]
Length = 556
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVEF-NSTNVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNGGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|297814408|ref|XP_002875087.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
gi|297320925|gb|EFH51346.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
Length = 819
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 45/175 (25%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN----LKPPTIFVPPSIKEDVEKLF-------EIHR 167
+ ITH H+DH+G LP + G YN + PT + P + ED ++ E+
Sbjct: 63 IIITHFHMDHVGALPYFTEVCG-YNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEDELFT 121
Query: 168 SLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKG 227
+ ++A+D+ +T ++ D+ +R + HV+
Sbjct: 122 TAHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVL----------------------- 158
Query: 228 KQIEKLKKSGVEITDIILSPEVAFTGD--TTSEFMLNPRNADALRAKILITEATF 280
V + + + +TGD T++ L D L+ +LI+E+T+
Sbjct: 159 --------GAVMVYAKVGDAAIVYTGDYNMTTDRHLGAAKIDRLQLDLLISESTY 205
>gi|229162733|ref|ZP_04290690.1| Zn-dependent hydrolase [Bacillus cereus R309803]
gi|228620615|gb|EEK77484.1| Zn-dependent hydrolase [Bacillus cereus R309803]
Length = 556
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E + V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDANSTVEF-DTTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|91070379|gb|ABE11293.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone HF10-88H9]
Length = 312
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 32/229 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +A+ GL N + I+ P ++ + F+ S + L+
Sbjct: 58 IFITHMHGDHIYGLPGLLATLGLSGNSEGIQIYGPSGLRSFINSAFK--SSFCKLSFPLN 115
Query: 178 LVALDVGETYEMRNDIVVRPFKT-------HHVIPSQGYVIYLLRKKLKKQYIHLKGKQI 230
V + E + N I+ K H IP+ GY + +K K +K +
Sbjct: 116 FVEV---ENFASENKILFENNKIKVNCACLKHKIPAYGYRV---SEKDKPGIFDIKKAES 169
Query: 231 EKLKKSGV-----EITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEM 285
++ + + ++L+ F G EF PR ++ + T+ F + +
Sbjct: 170 LEIAPGPIYSELQQGKKVVLADGRTFDGK---EFCGAPRKGESF---VYCTDTVFSESAV 223
Query: 286 SIEHAQQ---HGHTHLSEDIRQAVLKLQSK--VSAKVVPLTEGFKSVYT 329
S+ H T ED R A KL S ++AK L+ K + T
Sbjct: 224 SLSKNADLLVHESTFSEEDERMAYEKLHSTTIMAAKTALLSNTKKLIIT 272
>gi|316932337|ref|YP_004107319.1| hypothetical protein [Rhodopseudomonas palustris DX-1]
gi|315600051|gb|ADU42586.1| hypothetical protein Rpdx1_0958 [Rhodopseudomonas palustris DX-1]
Length = 244
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 117 NFVFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI---HRSLGNV 172
+ + ITH H DH GGLP + + ++ L +P I PP I + +L E H S
Sbjct: 54 DLILITHFHGDHFGGLPFLMLDAKFLKRKRPLVIAGPPGIDIRLTRLMEAMFEHSSATKP 113
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHH 202
+L ++AL+ G T + + V PF H
Sbjct: 114 SFDLQVLALEPGVTRQF-GAVTVTPFPVVH 142
>gi|229018992|ref|ZP_04175834.1| Zn-dependent hydrolase [Bacillus cereus AH1273]
gi|229025237|ref|ZP_04181659.1| Zn-dependent hydrolase [Bacillus cereus AH1272]
gi|228736065|gb|EEL86638.1| Zn-dependent hydrolase [Bacillus cereus AH1272]
gi|228742320|gb|EEL92478.1| Zn-dependent hydrolase [Bacillus cereus AH1273]
Length = 556
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T + N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNSTVDF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNNGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|448565324|ref|ZP_21636191.1| metal dependent hydrolase [Haloferax prahovense DSM 18310]
gi|445715068|gb|ELZ66824.1| metal dependent hydrolase [Haloferax prahovense DSM 18310]
Length = 248
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
V +TH HLDH+ L V +R L I P ++ VE LF++H L LD+
Sbjct: 56 VLLTHHHLDHVSDLMALVKARWLAGQDRLEIVGPEGTEDLVEGLFDVHDYLKG---RLDV 112
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
+VG T V F+ H +P+ Y
Sbjct: 113 QIREVGPTEFGVAGFDVMGFEVRHSMPTLAY 143
>gi|420373944|ref|ZP_14874007.1| ribonuclease Z [Shigella flexneri 1235-66]
gi|391316967|gb|EIQ74352.1| ribonuclease Z [Shigella flexneri 1235-66]
Length = 259
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + N++P T++ P ++E E + S + L+
Sbjct: 14 IFISHLHGDHLFGLPGLLCSRSMAGNVQPLTLYGPKGLREFTETALRLSGSW--TDYPLE 71
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + G+ + +R V F+ H + G+ +
Sbjct: 72 IVEITAGDVVDDGLRK---VTAFRLEHPLECYGFRV 104
>gi|339482267|ref|YP_004694053.1| cyclic-AMP phosphodiesterase [Nitrosomonas sp. Is79A3]
gi|338804412|gb|AEJ00654.1| cyclic-AMP phosphodiesterase [Nitrosomonas sp. Is79A3]
Length = 254
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 84/225 (37%), Gaps = 53/225 (23%)
Query: 85 GVSIGGHETCVIIPE---LKCAFDIGRCP-TRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
G+ G T +++ + + IG ++ + +F+TH HLDH+ +P V + G
Sbjct: 11 GIGSGAQTTAMLLDDDVLIDAGTGIGSLSIAEMVKIDHIFVTHAHLDHVAFIPFLVDTVG 70
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMR---------- 190
KP TI +I+ ++ L E L N +L D + MR
Sbjct: 71 SIRTKPITIH---AIQATLDILQE---HLFNWQLWPDFTKIPDNNFPYMRYEALPLDYTS 124
Query: 191 --NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPE 248
N + P +HV+PS GY Q++ + S
Sbjct: 125 DLNGRKITPLPANHVVPSVGY-------------------QLDSGRAS------------ 153
Query: 249 VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQH 293
+ FTGDTT+ L K LI E+ F + + I +H
Sbjct: 154 LVFTGDTTTNDALWTAVNKIGNLKYLIIESAFSNQKRDIALRSKH 198
>gi|153832098|ref|ZP_01984765.1| ribonuclease Z [Vibrio harveyi HY01]
gi|148871713|gb|EDL70554.1| ribonuclease Z [Vibrio harveyi HY01]
Length = 286
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 37/206 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GLP +AS G+ N K P + P E +++ FE ++ + L +L
Sbjct: 58 ICITHIHGDHCYGLPGLLASAGMNNRKDPLTIIAP---EGIKQWFEATQAFTKLYLPFEL 114
Query: 179 VALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSG 237
++V + + + H +PS Y + + Y I+KL++S
Sbjct: 115 HFIEVEQFDSIEIGQFTITATALSHRVPS---FAYCFEESTIRMY-----PDIDKLEQSN 166
Query: 238 VE----ITDIILSPEVAFTGDTT-----SEFMLNPRNA------------DAL--RAKIL 274
+ +++ +V + G T ++ PR A D+L A +L
Sbjct: 167 IPRGPIWGELVRGNDVEYQGQTLMSKAFTKLAHPPRKAIICGDNDKPEKLDSLIEGAHLL 226
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSE 300
+ E+T+ E E A + GH + S+
Sbjct: 227 VHESTY--SEAMKERAGEVGHAYSSQ 250
>gi|392541945|ref|ZP_10289082.1| ribonuclease Z [Pseudoalteromonas piscicida JCM 20779]
Length = 299
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ ITH H DH GLP ++S L + K P + P ++ + V+ F +L V L+ D
Sbjct: 40 ICITHLHGDHCYGLPGLISSMALNSRKAPLKLIAPRAVIQFVQSCF----TLTEVRLSFD 95
Query: 178 LVALDVGETYEMRNDIV------VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE 231
L+ + + E ND + + H +PS GY KL ++ I K K I+
Sbjct: 96 LITIALEEI----NDKLHLECCDIETIALQHRVPSVGY-------KLTEKCIPRKLK-ID 143
Query: 232 KLKKSGV 238
KL+ G+
Sbjct: 144 KLQLDGI 150
>gi|386347399|ref|YP_006045648.1| Ribonuclease Z [Spirochaeta thermophila DSM 6578]
gi|339412366|gb|AEJ61931.1| Ribonuclease Z [Spirochaeta thermophila DSM 6578]
Length = 311
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 119 VFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + + S + +P I+ PP I+E V E+ R + ++ +N +
Sbjct: 58 IFISHTHADHVTGLPGILMLSSQVDRSEPLYIYGPPKIREYV----EMSRQVLDMYINYE 113
Query: 178 LVALDV--GETYEMRN--DIVVRPFKTHHVIPSQGYVI 211
+V +V GE+ VR H P GYV+
Sbjct: 114 IVVEEVPWGESVVCYRGEGFSVRTIPLRHTKPCVGYVL 151
>gi|422413515|ref|ZP_16490474.1| ribonuclease Z [Listeria innocua FSL S4-378]
gi|313618091|gb|EFR90200.1| ribonuclease Z [Listeria innocua FSL S4-378]
Length = 306
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 36/213 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR TI+ P I E VE + + ++N +
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSDLTIYGPAGIAEYVETSLRLSGTRLTYKINFE 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSG 237
+ V EM +V H + S GY I +K K+ ++ EKLK G
Sbjct: 119 EIEPGVIFEDEM---FLVTADDLDHGVRSFGYRIV---EKDKQGALN-----AEKLKADG 167
Query: 238 VE---ITDIILSPEVAFTGD----TTSEFMLNPRNAD-----------------ALRAKI 273
VE + + + E+ D ++ P+N A+ A I
Sbjct: 168 VEAGPVFQKLKNGEIVTLADGRVIDGKNYIGEPQNGKIISIFGDTKETISELELAMNADI 227
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEDIRQAV 306
L+ EATF D+ + H T + ++ +A
Sbjct: 228 LVHEATFEGDKAKMAGEYMHSTTLQAANLAKAA 260
>gi|377557317|ref|ZP_09786967.1| Ribonuclease Z (RNase Z) [Lactobacillus gastricus PS3]
gi|376165723|gb|EHS84664.1| Ribonuclease Z (RNase Z) [Lactobacillus gastricus PS3]
Length = 308
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 84/199 (42%), Gaps = 33/199 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR P TI+ P IK VE +I + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGDEPLTIYGPVGIKTFVETALQISET----RLSYP 114
Query: 178 LVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ------- 221
+ +++ + E+ D V + H I GY I L +KL++
Sbjct: 115 IEYVEIKQDGEIFKDQTFQVEARRMDHKIACFGYRIVEADHPGELQVEKLRELAIPAGPI 174
Query: 222 YIHLKGKQIEKLKKSGVEIT--DIILSPE----VAFTGDTTSEFMLNPRNAD-ALRAKIL 274
Y +K Q L G +I D I +P+ VA DT +N + A A +L
Sbjct: 175 YGQIKAGQTVTL-PDGRQINGQDFIGAPQKGRIVAIIPDT----RVNENSVKLAQNADVL 229
Query: 275 ITEATFLDDEMSIEHAQQH 293
+ E TF +E + H H
Sbjct: 230 VHEGTFAKNEQRMAHNYYH 248
>gi|358638665|dbj|BAL25962.1| cAMP phosphodiesterase [Azoarcus sp. KH32C]
Length = 271
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 100 LKCAFDIGRCPTRAIQQ-NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155
+ C +G A+ + +FITH HLDHI +P+ V + G P T++ PP +
Sbjct: 46 IDCGTGVGDLELDALTAVDHIFITHSHLDHIAAIPLLVDAVGERRGVPVTVYAPPEV 102
>gi|385804337|ref|YP_005840737.1| ribonuclease Z [Haloquadratum walsbyi C23]
gi|339729829|emb|CCC41112.1| homolog to ribonuclease Z [Haloquadratum walsbyi C23]
Length = 285
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 18/164 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
V +TH H+DH+ L + +R L I P K ++ L EIH L + ++L
Sbjct: 58 VLLTHHHIDHVTDLLPLLKARWLAGETYLEIVGPAGTKRLIDDLLEIHEYLSD---QIEL 114
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGV 238
+VG T D + +T H + + Y + + ++Q I +
Sbjct: 115 RIREVGPTEFTVADFDIEARRTEHSVDG---LAYRITEPTQEQDISADAQS--------- 162
Query: 239 EITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLD 282
E +D S V F+GDT + + R AD A +L+ + +F D
Sbjct: 163 EASDADESATVVFSGDTEATNRI-ARLADG--AAVLVHDCSFPD 203
>gi|328948129|ref|YP_004365466.1| ribonuclease Z [Treponema succinifaciens DSM 2489]
gi|328448453|gb|AEB14169.1| Ribonuclease Z [Treponema succinifaciens DSM 2489]
Length = 308
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 117 NFVFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +F++H H DH+ GLP + + S + +P IF PP I E + E R + ++ +N
Sbjct: 56 NAIFVSHTHADHVTGLPGILMLSSQVDRTEPLYIFGPPKIAEYI----ETSRKVLDMYIN 111
Query: 176 LDLVALDV---GETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+V ++ G YE + +R F H GY +
Sbjct: 112 YPIVVKEITEPGVVYE-GDGFYIRSFPLEHTKTCVGYTL 149
>gi|30021887|ref|NP_833518.1| Zn-dependent hydrolase [Bacillus cereus ATCC 14579]
gi|29897443|gb|AAP10719.1| Zn-dependent hydrolase [Bacillus cereus ATCC 14579]
Length = 556
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITHGH DHIGG+ +YV L L P ++ EKL E LG V DL
Sbjct: 70 LFITHGHEDHIGGI-VYV----LRKLSIPVYATKLTVGLIQEKLGEAGM-LGRV----DL 119
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIP---------SQGYVIYLLRKKLKKQYIHLKGKQ 229
+D T E N V F T H IP S+G V+Y K + I G
Sbjct: 120 KTIDSNLTVEF-NTTTVSFFGTTHSIPDSVGVCFHTSKGAVVYTGDFKFDQTPIGNSGAD 178
Query: 230 IEKLKKSGVEITDIILS 246
+ K+ + G E +LS
Sbjct: 179 LGKMAQIGNEGVLCLLS 195
>gi|386723644|ref|YP_006189970.1| hypothetical protein B2K_15995 [Paenibacillus mucilaginosus K02]
gi|384090769|gb|AFH62205.1| hypothetical protein B2K_15995 [Paenibacillus mucilaginosus K02]
Length = 316
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R P + + +FITH H DH+ GLP ++SR P TI+ P I+E VE I
Sbjct: 50 RAPVKIGKLEKLFITHLHGDHLYGLPGLMSSRSYQGGDTPFTIYGPKGIREFVETSLRIS 109
Query: 167 RSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVI 211
S ++ ++ L+ E +D VV H I S GY I
Sbjct: 110 DS--HLGYQTTIIELEPEEQVVFEDDQFVVSAAPLVHRIESFGYRI 153
>gi|52549192|gb|AAU83041.1| metallo-beta-lactamase [uncultured archaeon GZfos26D6]
Length = 335
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FI+H H DH+ G+P + + L + + P P + V+K +LG N ++
Sbjct: 84 IFISHFHADHVLGIPGLLQTMALQDRQEPLEIYGP---KQVDKFLYHLLALGYAGRNFEV 140
Query: 179 VALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVI 211
A+++ G+ R +R KT H IPS GYV+
Sbjct: 141 KAIELRPGDVVR-RAGYEIRVIKTVHNIPSIGYVL 174
>gi|423470363|ref|ZP_17447107.1| ribonuclease Z [Bacillus cereus BAG6O-2]
gi|423558290|ref|ZP_17534592.1| ribonuclease Z [Bacillus cereus MC67]
gi|401191558|gb|EJQ98580.1| ribonuclease Z [Bacillus cereus MC67]
gi|402436492|gb|EJV68522.1| ribonuclease Z [Bacillus cereus BAG6O-2]
Length = 305
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 43/213 (20%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALLV--STTHVKYPLE 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V + + G +E N+ V + H I GY I LL KL +
Sbjct: 117 IVEITEEGIVFE-DNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPVF 175
Query: 223 IHLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AK 272
LK ++ +L+ V D I P+ + GDT R +A R A
Sbjct: 176 KRLKDGEVVELENGTVLNGKDFIGPPQKGRVITILGDT--------RYCEASRELAQDAD 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
+L+ EATF ++ +Q H + QA
Sbjct: 228 VLVHEATFAAED------EQQAHDYFHSTTEQA 254
>gi|337747188|ref|YP_004641350.1| hypothetical protein KNP414_02922 [Paenibacillus mucilaginosus
KNP414]
gi|336298377|gb|AEI41480.1| Rnz [Paenibacillus mucilaginosus KNP414]
Length = 312
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R P + + +FITH H DH+ GLP ++SR P TI+ P I+E VE I
Sbjct: 48 RAPVKIGKLEKLFITHLHGDHLYGLPGLMSSRSYQGGDTPFTIYGPKGIREFVETSLRIS 107
Query: 167 RSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVI 211
S ++ ++ L+ E +D VV H I S GY I
Sbjct: 108 DS--HLGYQTTIIELEPEEQVVFEDDQFVVSAAPLVHRIESFGYRI 151
>gi|336392452|ref|ZP_08573851.1| beta-lactamase superfamily hydrolase [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 294
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 106/253 (41%), Gaps = 50/253 (19%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD+G R R + +FITH H DHI GLP +++SR P TI+ P
Sbjct: 36 FDVGEGTQQQILRTAIRPRKVEKIFITHLHGDHIFGLPGFLSSRSFQGGNQPLTIYGPKG 95
Query: 155 IKEDVEKLFEIHRS-----LGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
+++ V+ + S + VE+ +++ + +T++ V K H I S GY
Sbjct: 96 VRDYVQTSLRVSDSRLTYPIKYVEITDNMLVFE-DDTFK------VECRKLDHRIASFGY 148
Query: 210 VIY-------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDIILSPE-----VA 250
+ LL KL+ +Y +K Q L V + + P V
Sbjct: 149 RVIEKDHTGELLVDKLRAAGIKPGPEYGKIKAGQPVTLADGQVLPSSDFIGPAQKGRIVT 208
Query: 251 FTGDT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHG-HTHLSEDIRQAVL 307
GDT T+ NAD +L+ E+TF + + + H T +E +++ +
Sbjct: 209 ILGDTRRTANCFTLAENAD-----VLVHESTFGKADGRMAYNYYHSTSTQAAEVAKKSHV 263
Query: 308 K--LQSKVSAKVV 318
K L + +SA+ V
Sbjct: 264 KQLLLTHISARYV 276
>gi|270291406|ref|ZP_06197628.1| ribonuclease Z [Pediococcus acidilactici 7_4]
gi|418069400|ref|ZP_12706678.1| beta-lactamase superfamily hydrolase [Pediococcus acidilactici
MA18/5M]
gi|270280252|gb|EFA26088.1| ribonuclease Z [Pediococcus acidilactici 7_4]
gi|357536869|gb|EHJ20897.1| beta-lactamase superfamily hydrolase [Pediococcus acidilactici
MA18/5M]
Length = 308
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 81/206 (39%), Gaps = 25/206 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++SR TI+ P IK+ V I + + +
Sbjct: 59 IFISHLHGDHIFGLPGFLSSRSNQGGDSELTIYGPAGIKDFVMTALRISET--KLAYRIR 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHL----- 225
V + G + VV + H I S G+ + LL KLK+ I
Sbjct: 117 FVEITKGGKLFEDANYVVEVAELDHRIKSYGFRVREKDHPGELLVDKLKEMAIPAGPIYG 176
Query: 226 ---KGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
+GKQ+ ++ D I P+ V GDT + A A +L+ E+
Sbjct: 177 EIKQGKQVTLPDGKVIDGKDFIGKPQPGRVVTILGDTRQTANIEKL---AYHADVLVHES 233
Query: 279 TFLDDEMSIEHAQQHGHTHLSEDIRQ 304
TF E S+ H + I Q
Sbjct: 234 TFGKQEGSLARKYYHSTNMQAARIAQ 259
>gi|257054875|ref|YP_003132707.1| ribonuclease Z [Saccharomonospora viridis DSM 43017]
gi|256584747|gb|ACU95880.1| RNAse Z [Saccharomonospora viridis DSM 43017]
Length = 306
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 36/238 (15%)
Query: 110 PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKL---FEIH 166
P AI V +TH H DH GLP + L + P S +E E+L H
Sbjct: 52 PASAITH--VCLTHFHGDHCLGLPGVIQRLSLDGVHRVHAHYPASGQEYFERLRHASSFH 109
Query: 167 RSLGNVELNLDLVAL----DVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQY 222
+ VE+ + + D GE + R D V F V P + ++ +L + Y
Sbjct: 110 ETTEVVEVPIAADGVVAQGDFGELWARRLDHPVEAFGYQLVEPDRRTML----PRLLRHY 165
Query: 223 IHLKGKQIEKLKKSG--------VEITDIIL---SPEVAFTGDTTSEFMLNPRNADALRA 271
+ G + +L+++G V + D+ + AF DT + + A A +A
Sbjct: 166 -GISGADVGRLRRAGTLDVNGRTVNVEDVSVLRAGQRFAFVMDTR---LCDNVFALAEKA 221
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 329
+L+ E+TFL E + A+++GH RQA ++ ++ + + + LT F YT
Sbjct: 222 DLLVIESTFLTTEAEL--AEEYGHL----TARQAA-RVAAESAVRTLVLTH-FSQRYT 271
>gi|239631569|ref|ZP_04674600.1| metal-dependent hydrolase of the beta-lactamase superfamily protein
[Lactobacillus paracasei subsp. paracasei 8700:2]
gi|239526034|gb|EEQ65035.1| metal-dependent hydrolase of the beta-lactamase superfamily protein
[Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 320
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 96/221 (43%), Gaps = 40/221 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR-GLYNLKPPTIFVPPSIKEDVEKLFEIHRS-----LGNV 172
VFITH H DHI GLP ++ASR P TI+ P I++ V+ ++ +S L V
Sbjct: 59 VFITHLHGDHIFGLPGFLASRSNQGGTDPLTIYGPSGIEDFVKTSLKVSQSHLSYPLKFV 118
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
L VA + +T+++ D + H I S G+ I LL K++
Sbjct: 119 LLQHPGVAFE-DQTFKVTFD------RLDHRITSFGFRIEEKPHPGELLIDKVRAAKIPS 171
Query: 222 ---YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKI 273
Y LK + L + + P VA GDT M N A A +
Sbjct: 172 GPVYAALKAGETVTLPDGRIFDGHDFIGPAQPGRTVAIFGDTR---MCNRALPLAAGADV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS 314
L+ E+TF DE + A+Q+ H + +++ A L ++ V
Sbjct: 229 LVHESTFGPDESQL--AKQYYH---ATNLQAAALAKRAGVG 264
>gi|4220489|gb|AAD12712.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
Length = 837
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN----LKPPTIFVPPSIKEDVEKLF-------EIHR 167
+ ITH H+DH+G LP + G YN + PT + P + ED ++ E+
Sbjct: 63 IIITHFHMDHVGALPYFTEVCG-YNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFT 121
Query: 168 SLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVI 204
+ ++A+D+ +T ++ D+ +R + HV+
Sbjct: 122 TTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVL 158
>gi|429101132|ref|ZP_19163106.1| Ribonuclease Z [Cronobacter turicensis 564]
gi|426287781|emb|CCJ89219.1| Ribonuclease Z [Cronobacter turicensis 564]
Length = 324
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P ++ P I E +E + S + L++
Sbjct: 79 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEVYGPKGIAEFIETTLRLSGSWTSYPLSVH 138
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+ G+ ++ ++ V F H + GY I
Sbjct: 139 EIT--EGQLFD-DGELTVTAFPLTHPVECYGYRI 169
>gi|423522019|ref|ZP_17498492.1| ribonuclease Z [Bacillus cereus HuA4-10]
gi|401176681|gb|EJQ83876.1| ribonuclease Z [Bacillus cereus HuA4-10]
Length = 307
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 43/213 (20%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALLV--STTHVKYPLE 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V + + G +E N+ V + H I GY I LL KL +
Sbjct: 117 IVEITEEGIVFE-DNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPVF 175
Query: 223 IHLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AK 272
LK ++ +L+ V D I P+ + GDT R +A R A
Sbjct: 176 KRLKDGEVVELENGTVLNGKDFIGPPQKGRVITILGDT--------RYCEASRELAQDAD 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
+L+ EATF ++ +Q H + QA
Sbjct: 228 VLVHEATFAAED------EQQAHDYFHSTTEQA 254
>gi|260598692|ref|YP_003211263.1| ribonuclease Z [Cronobacter turicensis z3032]
gi|260217869|emb|CBA32408.1| Ribonuclease Z [Cronobacter turicensis z3032]
Length = 324
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P ++ P I E +E + S + L++
Sbjct: 79 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEVYGPKGIAEFIETTLRLSGSWTSYPLSVH 138
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+ G+ ++ +++ V F H + GY I
Sbjct: 139 EIT--EGQLFD-DSELTVTAFPLTHPVECYGYRI 169
>gi|339497678|ref|ZP_08658654.1| beta-lactamase superfamily hydrolase [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 318
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 34/222 (15%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + + FI+H H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTIRPRKVEKIFISHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVI 211
IK+ V+ + + + ++ VAL G ++ ++ P + H I + G+ +
Sbjct: 96 KGIKDFVQTALRVSET--RLSYPINYVALQEGVIFDDPTFQVIAAPMR--HRIETWGFRV 151
Query: 212 Y-------LLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPEVAFTGDTTS----EF 259
LL KL+ + I G +LK V + D + + G+T
Sbjct: 152 VEKDHPGELLVDKLRAENIP-SGPLYGRLKAGKTVTLPDGRTINGLDYIGETQKGRVVTL 210
Query: 260 MLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHT 296
+L+ R D A A +L+ E+T+ + + A+ H H+
Sbjct: 211 ILDTRPNDNIALLAHHADVLVHESTYGASDEESKMARAHAHS 252
>gi|319651456|ref|ZP_08005584.1| ribonuclease Z [Bacillus sp. 2_A_57_CT2]
gi|317396771|gb|EFV77481.1| ribonuclease Z [Bacillus sp. 2_A_57_CT2]
Length = 312
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 92/224 (41%), Gaps = 35/224 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR T++ P +KE + E+ S+ L
Sbjct: 59 IFITHLHGDHIYGLPGLLSSRSFQGGDTEVTLYGPKGLKEYI----EVSLSVSGTYLKYP 114
Query: 178 LVALDVGE-TYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ-------Y 222
L ++ + T D V H IPS GY + LL KL + Y
Sbjct: 115 LKVAEISDGTILDEKDFKVEARLLEHGIPSYGYRVTEKDRPGTLLADKLAEAGIKPGPIY 174
Query: 223 IHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITE 277
+K G+ IE S +E + + + + GDT + + A A +LI E
Sbjct: 175 KKIKNGENIELENGSILEAKNFLGPAQKGRIITVLGDTR---ICDAAIELAAHADLLIHE 231
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
ATF E + H H T RQA K+ + +A+ + L
Sbjct: 232 ATFSQGEEKLAHDYFHSTT------RQAA-KVAREANARKLCLN 268
>gi|379721036|ref|YP_005313167.1| hypothetical protein PM3016_3163 [Paenibacillus mucilaginosus 3016]
gi|378569708|gb|AFC30018.1| Rnz [Paenibacillus mucilaginosus 3016]
Length = 314
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R P + + +FITH H DH+ GLP ++SR P TI+ P I+E VE I
Sbjct: 50 RAPVKIGKLEKLFITHLHGDHLYGLPGLMSSRSYQGGDTPFTIYGPKGIREFVETSLRIS 109
Query: 167 RSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVI 211
S ++ ++ L+ E +D VV H I S GY I
Sbjct: 110 DS--HLGYQTTIIELEPEEQVVFEDDQFVVSAAPLVHRIESFGYRI 153
>gi|30677952|ref|NP_178282.2| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
gi|332278175|sp|Q8GUU3.2|CPS3B_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3-II; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit II; Short=AtCPSF73-II;
Short=CPSF 73 kDa subunit II; AltName: Full=Protein
EMBRYO SAC DEVELOPMENT ARREST 26
gi|62320470|dbj|BAD94982.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
gi|330250395|gb|AEC05489.1| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
Length = 613
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN----LKPPTIFVPPSIKEDVEKLF-------EIHR 167
+ ITH H+DH+G LP + G YN + PT + P + ED ++ E+
Sbjct: 63 IIITHFHMDHVGALPYFTEVCG-YNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFT 121
Query: 168 SLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVI 204
+ ++A+D+ +T ++ D+ +R + HV+
Sbjct: 122 TTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVL 158
>gi|423121377|ref|ZP_17109061.1| ribonuclease Z [Klebsiella oxytoca 10-5246]
gi|376394212|gb|EHT06863.1| ribonuclease Z [Klebsiella oxytoca 10-5246]
Length = 306
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P ++E VE + S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPTGLREFVETALRLSGSW--TDYP 115
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
L +V + G ++ V + +H + GY I
Sbjct: 116 LTIVEVGPGLVFD-EGGYRVSAYPLNHPVECYGYRI 150
>gi|237732305|ref|ZP_04562786.1| ribonuclease Z [Citrobacter sp. 30_2]
gi|226907844|gb|EEH93762.1| ribonuclease Z [Citrobacter sp. 30_2]
Length = 305
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + N++P T++ P ++E E + S + LD
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMAGNVQPLTLYGPKGLREFTETALRLSGSW--TDYPLD 117
Query: 178 LVALDVGE 185
+V + GE
Sbjct: 118 IVEITPGE 125
>gi|27372065|gb|AAN87883.1| FEG protein [Arabidopsis thaliana]
Length = 613
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN----LKPPTIFVPPSIKEDVEKLF-------EIHR 167
+ ITH H+DH+G LP + G YN + PT + P + ED ++ E+
Sbjct: 63 IIITHFHMDHVGALPYFTEVCG-YNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFT 121
Query: 168 SLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVI 204
+ ++A+D+ +T ++ D+ +R + HV+
Sbjct: 122 TTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVL 158
>gi|220920044|ref|YP_002495346.1| beta-lactamase domain protein [Methylobacterium nodulans ORS 2060]
gi|219952874|gb|ACL63263.1| beta-lactamase domain protein [Methylobacterium nodulans ORS 2060]
Length = 243
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 113 AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLK--PPTIFVPPSIKEDVEKLFE-IHRSL 169
AIQ VF+TH H DH GGLP + L + + P TI P +++E + L E +
Sbjct: 52 AIQT--VFLTHLHGDHFGGLPFLILDAQLVSRRTAPLTIVGPSTLRERLAALMEAMFPGS 109
Query: 170 GNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKG- 227
VE DL +++ D + V F H PS G Y LR + + + G
Sbjct: 110 STVERRFDLRLIELEPEMPTEVDGVTVTAFPVRH--PS-GAPSYALRLACEGRTLCYTGD 166
Query: 228 -KQIEKLKKSGVEITDII 244
+ ++ L +G E+ +I
Sbjct: 167 TEWVDALYPAGREVDLLI 184
>gi|448401320|ref|ZP_21571556.1| ribonuclease Z [Haloterrigena limicola JCM 13563]
gi|445666583|gb|ELZ19242.1| ribonuclease Z [Haloterrigena limicola JCM 13563]
Length = 314
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 44/213 (20%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + + +P I P
Sbjct: 35 FDAGEGTQRQMMRFGTGFSVSHLFVTHLHGDHVLGIPGLLETMAFNDRTEPLAIHTPHGT 94
Query: 156 KEDVEKLFEIHRSLGNV-ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ ++ L +LGN + + + G+ ++ VR F T H S GY +
Sbjct: 95 RRQLKSLVN---ALGNRPSFPVRINEVGDGDVAYRADEYEVRAFATDHDTRSVGYALVED 151
Query: 215 RKKLKKQYIHLK------GKQIEKLKKS-GVEITD-IILSPE-----------VAFTGDT 255
+K + H + G + KL K VE+ D ++ PE + +TGDT
Sbjct: 152 DRKGRFDREHAEELGVPVGPKFSKLHKGESVELEDGTVVEPEQVVGEPRPGRSIVYTGDT 211
Query: 256 -----TSEFMLNPRNADALRAKILITEATFLDD 283
T E P +LI +ATF DD
Sbjct: 212 RPTAATIEVADEP--------DLLIHDATFADD 236
>gi|392972174|ref|ZP_10337566.1| ribonuclease z [Staphylococcus equorum subsp. equorum Mu2]
gi|403046500|ref|ZP_10901969.1| hypothetical protein SOJ_15780 [Staphylococcus sp. OJ82]
gi|392509887|emb|CCI60868.1| ribonuclease z [Staphylococcus equorum subsp. equorum Mu2]
gi|402763196|gb|EJX17289.1| hypothetical protein SOJ_15780 [Staphylococcus sp. OJ82]
Length = 306
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 88/224 (39%), Gaps = 42/224 (18%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGEGKPLTVVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVIY 212
I++ +E ++ S LN + +++ E N V +H I S GY I
Sbjct: 96 GIQQFIETALQLSES----RLNYPITYIEIEEQLNYHHNGFNVNAHLLNHGITSYGYRIE 151
Query: 213 LLRKKLKKQYIHLK------GKQIEKLK------------KSGVEITDIILSPEVAFTGD 254
K LK G + + +K S D + P +A GD
Sbjct: 152 APYTPGKIDVQALKDIGLEPGPKYQDIKINETFEHNGLIYDSNQFKGDAVKGPVIAIFGD 211
Query: 255 TT---SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
T +E ++ A A +++ E+T+++ + + + H H
Sbjct: 212 TMPCKNELLI------AQDATVMVHESTYIEGDKMLANNYHHSH 249
>gi|242398813|ref|YP_002994237.1| Ribonuclease Z [Thermococcus sibiricus MM 739]
gi|259494147|sp|C6A2P3.1|RNZ_THESM RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|242265206|gb|ACS89888.1| Ribonuclease Z [Thermococcus sibiricus MM 739]
Length = 306
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L+ +P I+ P E ++ + G + +
Sbjct: 57 IFITHFHGDHYLGLMSLIQTMTLWKRERPLYIYGPKYTFEFIQN----YLKSGFFRPSFE 112
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKK-----LKKQYIHLK-GKQIE 231
+ ++GET D + FK H IP+ GYV K+ K + + LK G ++
Sbjct: 113 IHIHELGETRLKFKDYEIWSFKVDHGIPALGYVFKENDKRGNFDVEKIRELGLKPGPWMK 172
Query: 232 KLKKSG--------VEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEAT 279
KL+ G + + D+ P ++ +TGDT + RA +LI EAT
Sbjct: 173 KLEIKGKIEINGKLIYLEDVTGEPKKGVKIVYTGDTEQ---CERIKLFSERADLLIHEAT 229
Query: 280 FLDDE 284
+L E
Sbjct: 230 YLSRE 234
>gi|291546944|emb|CBL20052.1| RNAse Z [Ruminococcus sp. SR1/5]
Length = 303
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 34/206 (16%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ + TH H DHI GLP + + G + P V P +E++ R + EL
Sbjct: 55 DVICFTHYHGDHISGLPGLLLTMGNADRTEPLTLVGP---RGLERVVSALRVIAP-ELPF 110
Query: 177 DLVALDVGETYEM--RNDIVVRPFKTHHVIPSQGYVIYLLRKK-------------LKKQ 221
++ +++ + E+ N + F+ +H + GY + +LR+ LK
Sbjct: 111 EIKFIEITKPEEVLELNGYRITAFRVNHNVTCYGYTLEILRQGKFSPDSAREHEIPLKFW 170
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSP-----EVAFTGDT--TSEFMLNPRNADALRAKIL 274
KG+ +E + + D++L P ++ +T DT T + N + +D +
Sbjct: 171 NPLQKGQTVE--DEGRIYTPDMVLGPPRKGIKLTYTTDTRPTESILRNAKGSD-----LF 223
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSE 300
I E + +D+ IE A+ + H E
Sbjct: 224 ICEGMYGEDD-KIEKAKGYKHMTFRE 248
>gi|350533410|ref|ZP_08912351.1| ribonuclease Z [Vibrio rotiferianus DAT722]
Length = 325
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 45/210 (21%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GLP +AS G+ N K P + P + +E+ FE ++ + L +L
Sbjct: 58 ICITHIHGDHCYGLPGLLASAGMNNRKDPLTIIAP---KGIEQWFEATQAFTKLYLPFEL 114
Query: 179 VALDVGETYEMRNDIVVRPFKT-----HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKL 233
++V E + I + F H +PS + + + Y I+KL
Sbjct: 115 HFIEV----EQFDSIEIGQFTITATILSHRVPS---FAFCFEESTIRMY-----PDIDKL 162
Query: 234 KKSGVE----ITDIILSPEVAFTGDTT-----SEFMLNPRNA------------DAL--R 270
++S + +++ +V + G T ++F PR A D L
Sbjct: 163 EQSNIPRGPIWGELVRGNDVEYQGQTLMSKAFTKFAHPPRKAIICGDNDTPEKLDGLIEG 222
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSE 300
A +L+ E+T+ E E A + GH + S+
Sbjct: 223 AHLLVHESTY--SEAMKERAGEVGHAYSSQ 250
>gi|197284161|ref|YP_002150033.1| ribonuclease Z [Proteus mirabilis HI4320]
gi|254808654|sp|B4EUI8.1|RBN_PROMH RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|194681648|emb|CAR40697.1| ribonuclease Z [Proteus mirabilis HI4320]
Length = 305
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 95/227 (41%), Gaps = 36/227 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI GLP + SR + + P TI+ P IK +E + +S +
Sbjct: 57 NKIFITHLHGDHIFGLPGLLCSRSMGGTENPLTIYGPTGIKAFIETALTLSQSY--LTYP 114
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE---- 231
LD++ ++ I H +P GY + K K L+ + I
Sbjct: 115 LDIIEIEQDGFLFEEEGIRASCGALSHPVPCFGYRLEEDNKPGKLNADKLETENIPRGPW 174
Query: 232 -KLKKSGVEIT----DII-----LSPE-----VAFTGDT--TSEFMLNPRNADALRAKIL 274
KL K G +T II LS E + GDT T + NAD ++
Sbjct: 175 YKLLKQGKTVTLPDGRIIDGKDYLSTEIKGRCIVIFGDTQPTPNAVKLAENAD-----VI 229
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
+ EATF D + A GH S I+ A +L K +AK + +T
Sbjct: 230 VHEATFKHD--MADKANSRGH---SSTIQAA--ELAKKANAKRLIIT 269
>gi|154151133|ref|YP_001404751.1| ribonuclease Z [Methanoregula boonei 6A8]
gi|153999685|gb|ABS56108.1| ribonuclease Z [Methanoregula boonei 6A8]
Length = 312
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 101 KCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDV 159
+C F I + +F++H H DH G+ V + +P TI+ P + + V
Sbjct: 52 RCGFTI----------DAIFVSHWHADHFLGIFGLVQTMSFNGRTEPLTIYGPSWVHDFV 101
Query: 160 EKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
E + ++ R N++ LD V L+ G + F H +P+ GYV+
Sbjct: 102 ETVKKVSRF--NLKFTLDSVELEEGSWVRFEG-YTITAFAASHGLPALGYVL 150
>gi|448508351|ref|ZP_21615457.1| beta-lactamase [Halorubrum distributum JCM 9100]
gi|448518274|ref|ZP_21617386.1| beta-lactamase [Halorubrum distributum JCM 10118]
gi|445697417|gb|ELZ49481.1| beta-lactamase [Halorubrum distributum JCM 9100]
gi|445705386|gb|ELZ57284.1| beta-lactamase [Halorubrum distributum JCM 10118]
Length = 416
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPP------SIKEDVEK 161
R PTR + V ++HGHLDH+G +P + + +PP + PP ++ ED K
Sbjct: 36 RYPTRDPEPEAVVVSHGHLDHVGAVPALLKG----DRRPPIHWTPPTGELARTLAEDTLK 91
Query: 162 L 162
L
Sbjct: 92 L 92
>gi|425075650|ref|ZP_18478753.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425086286|ref|ZP_18489379.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|405594050|gb|EKB67473.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405605201|gb|EKB78267.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
Length = 306
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P +KE VE + S + L
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETALRLSGSWTDYPLT 117
Query: 176 L 176
+
Sbjct: 118 I 118
>gi|423452551|ref|ZP_17429404.1| ribonuclease Z [Bacillus cereus BAG5X1-1]
gi|401140189|gb|EJQ47746.1| ribonuclease Z [Bacillus cereus BAG5X1-1]
Length = 305
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 43/213 (20%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALLV--STTHVKYPLE 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V + + G +E N+ V + H I GY I LL KL +
Sbjct: 117 IVEITEEGIVFE-DNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPVF 175
Query: 223 IHLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AK 272
LK ++ +L+ V D I P+ + GDT R +A R A
Sbjct: 176 KRLKDGEVVELENGTVLNGKDFIGPPQKGRVITILGDT--------RYCEASRELAQDAD 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
+L+ EATF ++ +Q H + QA
Sbjct: 228 VLVHEATFAAED------EQQAHDYFHSTTEQA 254
>gi|300309651|ref|YP_003773743.1| cAMP phosphodiesterase-like protein [Herbaspirillum seropedicae
SmR1]
gi|300072436|gb|ADJ61835.1| cAMP phosphodiesterases protein [Herbaspirillum seropedicae SmR1]
Length = 257
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 39/185 (21%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEK-LFEIH-----RSLG 170
+ VFITH HLDHI LP+ + S G P T+ + E + K +F H +
Sbjct: 48 DHVFITHAHLDHIACLPLMIDSVGDMRPTPITMHATAATLEIIRKHIFNWHIWPDFSVIP 107
Query: 171 NVELN-LDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGK 228
+ E L ++ G+T + + I P H +P+ GY +
Sbjct: 108 SAEQPFLRFATIEPGQTVALGQRSITALPAA--HTVPAVGYQV----------------- 148
Query: 229 QIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIE 288
K ++SG + AF+GDTT L ++ + LI EA F + E +
Sbjct: 149 ---KNERSGASL---------AFSGDTTVCPPLWQALNRIVQLRYLIIEAAFANRERELA 196
Query: 289 HAQQH 293
+H
Sbjct: 197 LLSKH 201
>gi|16801150|ref|NP_471418.1| hypothetical protein lin2084 [Listeria innocua Clip11262]
gi|423098876|ref|ZP_17086584.1| ribonuclease Z [Listeria innocua ATCC 33091]
gi|41017573|sp|Q92A38.1|RNZ_LISIN RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|16414585|emb|CAC97314.1| lin2084 [Listeria innocua Clip11262]
gi|370794703|gb|EHN62466.1| ribonuclease Z [Listeria innocua ATCC 33091]
Length = 306
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 87/211 (41%), Gaps = 32/211 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR TI+ P I E VE + + ++N +
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSDLTIYGPAGIAEYVETSLRLSGTRLTYKINFE 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIH------ 224
+ V EM +V H + S GY I L +KLK +
Sbjct: 119 EIEPGVIFEDEM---FLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVEAGPVFQ 175
Query: 225 -LKGKQIEKLKKSGV-EITDIILSPE----VAFTGD---TTSEFMLNPRNADALRAKILI 275
LK +I L V + + I P+ ++ GD T SE L A+ A IL+
Sbjct: 176 KLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTKETVSELEL------AMNADILV 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEDIRQAV 306
EATF D+ + H T + ++ +A
Sbjct: 230 HEATFEGDKAKMAGEYMHSTTLQAANLAKAA 260
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,107,227,323
Number of Sequences: 23463169
Number of extensions: 209733368
Number of successful extensions: 630493
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 1477
Number of HSP's that attempted gapping in prelim test: 629587
Number of HSP's gapped (non-prelim): 1768
length of query: 330
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 188
effective length of database: 9,027,425,369
effective search space: 1697155969372
effective search space used: 1697155969372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)