BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020181
(330 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L633|RNZC_ARATH Ribonuclease Z, chloroplastic OS=Arabidopsis thaliana GN=CPZ PE=2
SV=1
Length = 354
Score = 487 bits (1254), Expect = e-137, Method: Compositional matrix adjust.
Identities = 246/359 (68%), Positives = 282/359 (78%), Gaps = 35/359 (9%)
Query: 1 MQLS--LPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGP---LNALKSAGFLSSIS 55
MQLS P SP P IFP + K P H L+ Q ++ +K +G+ SSIS
Sbjct: 1 MQLSSSFPISP---PKIFP--STKHHKPPVITHQLAAQIQSNRRHFVSPVKVSGYFSSIS 55
Query: 56 RAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ 115
RAI+EEEEYRKARAAV RKG++LE Y IEG+S+GGHETCVI+PELKC FDIGRCP+RAIQ
Sbjct: 56 RAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQ 115
Query: 116 QNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
Q F+FITH HLDHIGGLPMYVASRGLYNL+PP IFVPPSIKEDVEKL EIHR++G VELN
Sbjct: 116 QKFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELN 175
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKK 235
++L+ L VGETYE+RNDIVVRPF THHVIPSQGYVIY +RKKL+KQY HLKGKQIEK+KK
Sbjct: 176 VELIPLAVGETYELRNDIVVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKK 235
Query: 236 SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
SGVEITD ILSPE+AFTGDTTSE+ML+PRNADALRAK+LITEATFLD+ S EHAQ GH
Sbjct: 236 SGVEITDTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFLDESFSTEHAQALGH 295
Query: 296 THLS-------------------------EDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 329
TH+S E+IR+AVLKLQSKVSAKV+PLTEGF+S Y+
Sbjct: 296 THISQIIENAKWIRSKTVLLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEGFRSRYS 354
>sp|Q8LGU7|RNZN_ARATH Nuclear ribonuclease Z OS=Arabidopsis thaliana GN=NUZ PE=2 SV=3
Length = 280
Score = 322 bits (825), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 147/233 (63%), Positives = 188/233 (80%)
Query: 73 RKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGL 132
+K + +EGY IEG+SIGGHETC+I P L+ AFDIGRCP RAI Q+F+FI+H H+DHIGGL
Sbjct: 4 KKAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGL 63
Query: 133 PMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND 192
PMYVA+RGLY +KPPTI VP SIKE VE LFE+HR L + EL +LV LD+GE + +R D
Sbjct: 64 PMYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGEEFIIRKD 123
Query: 193 IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFT 252
+ V+ FKT HVI SQGYV+Y + KLKK+YI L G +I+ LK SGVEITD I++PEVAFT
Sbjct: 124 LKVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVEITDSIITPEVAFT 183
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
GDTTS+F+++ NADAL+AK+L+ E+TFLDD +S+EHA+ +GH H+SE + A
Sbjct: 184 GDTTSDFVVDETNADALKAKVLVMESTFLDDSVSVEHARDYGHIHISEIVNHA 236
>sp|P60193|RNZN_WHEAT Nuclear ribonuclease Z (Fragment) OS=Triticum aestivum GN=ELAC PE=1
SV=1
Length = 176
Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 107/169 (63%), Positives = 139/169 (82%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
+++EGY +EG+SIGGHETCVI P L AFDIGRCP RA+ Q+F+FI+H HLDHIGGLPMY
Sbjct: 7 LEIEGYPVEGISIGGHETCVIFPTLSLAFDIGRCPQRAVAQDFLFISHAHLDHIGGLPMY 66
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGLY L+PPTIFVP ++E VE+LF++HR++ ELN LV LD+GE YE+R D+ V
Sbjct: 67 VATRGLYRLRPPTIFVPKYLRELVERLFDVHRAMDQSELNHTLVPLDIGEEYELRRDLKV 126
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDII 244
R FKT+H IPSQGYVIY +++KLK+ Y+ L G +I++LK SGVEIT+ +
Sbjct: 127 RAFKTYHTIPSQGYVIYSVKQKLKQDYLGLPGSEIKRLKLSGVEITNTV 175
>sp|A4YHP1|RNZ_METS5 Ribonuclease Z OS=Metallosphaera sedula (strain ATCC 51363 / DSM
5348) GN=rnz PE=3 SV=1
Length = 291
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 106/204 (51%), Gaps = 38/204 (18%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELN 175
N + ITH H DH+ GLP + + G+Y+ K I P +K+ + + FE R+ +
Sbjct: 54 NVIAITHLHADHVLGLPSLIQTMGMYDRKERLYILGPEGLKDLLTETFE--RTYFSPNFP 111
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------YLLRKKLKKQYIHLKGKQ 229
++ V+ +YE + I VRPF+T HV+PSQGY++ L ++L+++ + +
Sbjct: 112 IEFVS-----SYESQG-IRVRPFRTCHVVPSQGYLVEEKDTANLDAERLRREGV--TDWR 163
Query: 230 IEKLKKSGVEI--TDIILSPE----------VAFTGDTT-SEFMLNPRNADALRAKILIT 276
+ ++ K G E+ D +L PE +A+TGDT E ++N +L+
Sbjct: 164 VMRMLKEGKEVPWGDRVLKPEDYLIVKRGIRIAYTGDTRPCETVINSVKG----VDLLLH 219
Query: 277 EATFLDDEMSIEHAQQHGHTHLSE 300
++TF E I+ A ++GH+ +E
Sbjct: 220 DSTF---EQGID-ASEYGHSTSTE 239
>sp|Q9HN60|RNZ_HALSA Ribonuclease Z OS=Halobacterium salinarum (strain ATCC 700922 / JCM
11081 / NRC-1) GN=rnz PE=3 SV=1
Length = 308
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 106/245 (43%), Gaps = 39/245 (15%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VFITHGH DH+ GLP V + + P TI VP +
Sbjct: 35 FDAGEATQRQMMRYKTGFGVSDVFITHGHGDHVFGLPGLVHTWDFNDRTDPLTIHVPRGL 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY--- 212
+ D+E L + + G+V + + G +D VR F+T H S GY +
Sbjct: 95 RGDIEDL--VFSAGGDVGYPVRITEATPGAVVRSHDDYEVRAFETAHSTASVGYALVEDD 152
Query: 213 ----LLRKKLKKQYIHLKGKQIEKLKKSGVEITD-IILSPE-----------VAFTGDTT 256
R + ++ + + K VE+ D ++SPE + +TGDT
Sbjct: 153 RTGRFDRARAEELGVPVGPKFSTLHDGQPVELDDGTVVSPEQVVGDPRPGRTLVYTGDTR 212
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAK 316
+P + A A +LI +ATF +D + E A + GH+ E + ++ AK
Sbjct: 213 PH---DPVVSAAEDADLLIHDATFAND--ASERAAETGHSTAGE-----AADVATEAGAK 262
Query: 317 VVPLT 321
+ LT
Sbjct: 263 ALALT 267
>sp|B0R7E2|RNZ_HALS3 Ribonuclease Z OS=Halobacterium salinarum (strain ATCC 29341 / DSM
671 / R1) GN=rnz PE=3 SV=1
Length = 308
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 106/245 (43%), Gaps = 39/245 (15%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VFITHGH DH+ GLP V + + P TI VP +
Sbjct: 35 FDAGEATQRQMMRYKTGFGVSDVFITHGHGDHVFGLPGLVHTWDFNDRTDPLTIHVPRGL 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY--- 212
+ D+E L + + G+V + + G +D VR F+T H S GY +
Sbjct: 95 RGDIEDL--VFSAGGDVGYPVRITEATPGAVVRSHDDYEVRAFETAHSTASVGYALVEDD 152
Query: 213 ----LLRKKLKKQYIHLKGKQIEKLKKSGVEITD-IILSPE-----------VAFTGDTT 256
R + ++ + + K VE+ D ++SPE + +TGDT
Sbjct: 153 RTGRFDRARAEELGVPVGPKFSTLHDGQPVELDDGTVVSPEQVVGDPRPGRTLVYTGDTR 212
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAK 316
+P + A A +LI +ATF +D + E A + GH+ E + ++ AK
Sbjct: 213 PH---DPVVSAAEDADLLIHDATFAND--ASERAAETGHSTAGE-----AADVATEAGAK 262
Query: 317 VVPLT 321
+ LT
Sbjct: 263 ALALT 267
>sp|Q973F1|RNZ_SULTO Ribonuclease Z OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545
/ NBRC 100140 / 7) GN=rnz PE=3 SV=1
Length = 293
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 49/238 (20%)
Query: 104 FDIGR-CPTRAIQQNFVF-------ITHGHLDHIGGLPMYVASRGLYNLKPPTIFV-PPS 154
FD G R ++ N F ITH H DH+ GLP + + G+Y+ K + + P
Sbjct: 33 FDCGEGTQWRMMEHNLSFMKIKLIGITHMHGDHVLGLPGMIETMGMYSRKESLLLMGPKE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV---- 210
+KE +E +F+ N E+ + + YE N I + F+T H I SQGY+
Sbjct: 93 LKEFLEDIFKKTYFYPNFEIQ-------IIDKYEDEN-IKISTFETCHTIESQGYLFEEK 144
Query: 211 --IYLLRKKLKKQYIHLKGKQIEKLKKSG--VEITDIILSPE----------VAFTGDTT 256
+ + KL+K+ I K +I ++ K G VEI +L PE +A+TGDT
Sbjct: 145 DRLKIDIDKLRKEGI--KDWRIIRMLKEGKRVEINGKVLLPEDYLIVKKGIRIAYTGDTG 202
Query: 257 -SEFMLNP-RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSK 312
E ++N ++ D +LI ++TF+D+ + A ++GH++ S D LK K
Sbjct: 203 PCEKVINAVKDVD-----LLIHDSTFIDE----KEAYKYGHSN-SYDAAYVALKANVK 250
>sp|B1YLU8|RNZ_EXIS2 Ribonuclease Z OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM
13490 / 255-15) GN=rnz PE=3 SV=1
Length = 301
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 39/232 (16%)
Query: 94 CVIIPELKCAFDIGRC--------PTRAIQQNFVFITHGHLDHIGGLPMYVASR-GLYNL 144
++ P++ FD G P + + + +FITH H DHI GLP ++++R L
Sbjct: 23 ALLHPKMTWLFDCGEATQHQMLHSPIKPRKVSTIFITHLHGDHIFGLPGFISTRAALEGT 82
Query: 145 KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-DIVVRPFKTHHV 203
TIF P IKE +E I + + LD++ ++ G+TYE I V + H
Sbjct: 83 TLLTIFGPKGIKEWLEATLRITGTY--LRYPLDVIEVEAGQTYEQEGFHIHVEALE--HR 138
Query: 204 IPSQGYVIYLLRKK-------LKK-------QYIHLKGKQIEKLKKSGVEITDIILSP-- 247
+ GY I +K LK+ Y +K K+ + + + TD + P
Sbjct: 139 FLAYGYRIEGQEEKGALHVEALKQLGVPSGPLYRQIKQKETFVFEGTEYQSTDFLGEPKP 198
Query: 248 --EVAFTGDTT-SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHT 296
++A GDT E L A + +L+ EATF D E +HA + GH+
Sbjct: 199 GIKLAVLGDTVPCEGSLRL----AEKVDVLVHEATFADSEQ--DHAGRFGHS 244
>sp|Q8Q032|RNZ_METMA Ribonuclease Z OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM
3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rnz PE=3 SV=1
Length = 305
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 113/254 (44%), Gaps = 46/254 (18%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R T + + +F++H H DH G+P + + K P TI+ P KE E+
Sbjct: 46 RAKTGMMSLSSIFVSHFHADHFLGIPGLIQTMSFLGRKEPLTIYGPEGTKE----FTEVF 101
Query: 167 RSLGNVELNLDL--VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKK 217
+ LG L ++ V L G+ E +N VVR KT H PS GY + R+K
Sbjct: 102 KVLGYCNLKYEVRGVELSPGDIVEGKN-YVVRALKTEHSTPSLGYSLIENPRPGRFNREK 160
Query: 218 LKKQYIHLKGKQIEKLKKSG-VEITDIILSPE-----------VAFTGDTT-SEFMLNP- 263
+ + L G KL+K VE+ ++ PE V ++GDT E +L
Sbjct: 161 AVELGV-LPGPLFAKLQKGNPVEVNGKLVKPEEVVGAPRPGRTVVYSGDTRPCEAVLEAS 219
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQAVLK-LQSKVS 314
R+AD +LI + +F DEM+ A++ H+ E +RQ VL + S+ +
Sbjct: 220 RDAD-----VLIHDGSFA-DEMA-GWAEESMHSTAGEVASLAKEAGVRQLVLTHISSRYT 272
Query: 315 AKVVPLTEGFKSVY 328
V P+ + V+
Sbjct: 273 DDVGPILNDSRKVF 286
>sp|Q97Z88|RNZ_SULSO Ribonuclease Z OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM
1617 / JCM 11322 / P2) GN=rnz PE=3 SV=1
Length = 291
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 106/220 (48%), Gaps = 41/220 (18%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
I+H H DH+ GL +AS GL + K I P +K+ + FE + N ++ +
Sbjct: 59 ISHMHGDHVFGLLGVIASMGLLDRKETLYILGPRKLKDFLYTSFEYSKF--NPSFKIEFI 116
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQIEKL 233
+ Y N I + FKT H I SQGY+I + +KL+K+ I + I KL
Sbjct: 117 -----DNYNDEN-ITISTFKTCHTIESQGYLIMEKDRVKIDEEKLEKEKIR-DWRVIRKL 169
Query: 234 KKSG-VEITDIILSPE----------VAFTGDTTSEFMLNPRNADALRA-KILITEATFL 281
K+ VE +L PE VA+TGDT M D+++ ILI ++TFL
Sbjct: 170 KEGKTVEYNGKLLKPEDYLVIKRGSKVAYTGDT----MPCQSVVDSVKGVDILIHDSTFL 225
Query: 282 DDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
D+ A +GH+++++ + A+ + S K++ LT
Sbjct: 226 DE----PSAYTYGHSNVTDAAKIAL-----EASVKLLALT 256
>sp|B2G6S0|RNZ_LACRJ Ribonuclease Z OS=Lactobacillus reuteri (strain JCM 1112) GN=rnz
PE=3 SV=1
Length = 309
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 37/210 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR +P TI+ P IK V+ ++ S L+
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRYVQTSLQVSES----RLSYP 114
Query: 178 LVALDVGETYEMRND----IVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ----- 221
L +++ + E+ ND ++ R K H I GY I L +KL++Q
Sbjct: 115 LHFVEITDDGELFNDHGFRVIAR--KLDHKIACFGYRIEEADHPGELQVEKLREQKVPSG 172
Query: 222 --YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAK 272
Y LK GK + ++ D I +P+ +A GDT T +L +NAD
Sbjct: 173 PIYGQLKAGKTVTLPDGRVLDGHDFIGTPQPGRIIAILGDTRQTKNAILLAQNAD----- 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
+L+ E+TF DE + H H + + +I
Sbjct: 228 VLVHESTFAKDETKMAHNYYHSTSKQAAEI 257
>sp|A5VJA0|RNZ_LACRD Ribonuclease Z OS=Lactobacillus reuteri (strain DSM 20016) GN=rnz
PE=3 SV=1
Length = 309
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 37/210 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR +P TI+ P IK V+ ++ S L+
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRYVQTSLQVSES----RLSYP 114
Query: 178 LVALDVGETYEMRND----IVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ----- 221
L +++ + E+ ND ++ R K H I GY I L +KL++Q
Sbjct: 115 LHFVEITDDGELFNDHGFRVIAR--KLDHKIACFGYRIEEADHPGELQVEKLREQKVPSG 172
Query: 222 --YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAK 272
Y LK GK + ++ D I +P+ +A GDT T +L +NAD
Sbjct: 173 PIYGQLKAGKTVTLPDGRVLDGHDFIGTPQPGRIIAILGDTRQTKNAILLAQNAD----- 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEDI 302
+L+ E+TF DE + H H + + +I
Sbjct: 228 VLVHESTFAKDETKMAHNYYHSTSKQAAEI 257
>sp|B9DNT1|RNZ_STACT Ribonuclease Z OS=Staphylococcus carnosus (strain TM300) GN=rnz
PE=3 SV=1
Length = 306
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 90/207 (43%), Gaps = 34/207 (16%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
N +FITH H DHI GLP + SR KP TI P IK VE + SL +
Sbjct: 57 NHIFITHMHGDHIYGLPGLLTSRSFQGGENKPLTIVGPRGIKNYVETTLQ--ASLSRLNY 114
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GK 228
+ + +D Y V + +H +PS GY I K L+ G
Sbjct: 115 PVTFIEIDDQLHYHHEG-FTVSAYNLNHGVPSFGYRIEAPTTSGKIDVASLREIGMEPGP 173
Query: 229 QIEKLKKSGVEI-TDII-----------LSPEVAFTGDTT---SEFMLNPRNADALRAKI 273
+ +++K S I D + + P++A GDT +E L A A +
Sbjct: 174 KYQEVKNSDSFIFNDKVYQSSDFKGEEKVGPKIAIFGDTMPCENELKL------ADNADL 227
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSE 300
L+ EAT++D + S+ A H H+H+++
Sbjct: 228 LVHEATYIDGDRSL--ADSHHHSHIND 252
>sp|D4GZ88|RNZ_HALVD Ribonuclease Z OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757
/ JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
GN=rnz PE=1 SV=1
Length = 315
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + ++ + PP
Sbjct: 33 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLD-FNDRDDSLAIHGPPG 91
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
K +E+L +H ++ + + G +D VR F T H S GY +
Sbjct: 92 SKGHLEQL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVED 149
Query: 212 ----YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 150 DRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGDT 209
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQ-AV 306
LN A A +L+ +ATF D+E E A+Q H+ E D+R+ A+
Sbjct: 210 RP---LNSTVEVACDADLLVHDATFTDEEA--ERAKQTAHSTAREAARVARDADVRRFAL 264
Query: 307 LKLQSKVSAKVVPLTEGFKSVY 328
+ ++ +A PL E + VY
Sbjct: 265 THISARYAADPSPLLEQAREVY 286
>sp|Q5JE70|RNZ_PYRKO Ribonuclease Z OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 /
JCM 12380 / KOD1) GN=rnz PE=3 SV=1
Length = 314
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH G+P + + L++ KP I+ P + V+ L + G D
Sbjct: 57 IFITHFHGDHYLGIPALIQTMNLWDRQKPLHIYGPKYTFQFVQNLL----NSGFFRPGFD 112
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+ ++GET D + FK H IP+ GYV L++KL ++Y +G +
Sbjct: 113 IHVHELGETRLKFGDYEIWSFKVEHGIPALGYVFKEKDRRGKFLKEKL-REYGLEEGPIL 171
Query: 231 EKLKKSG-VEITDIILSPE-----------VAFTGDTTSEFMLNPRNADAL---RAKILI 275
KL++ G +E I+ E + +TGDT P L RA +LI
Sbjct: 172 GKLEREGKIEWNGRIIRLEDVTGPRRKGLKIVYTGDT------EPCERVKLFSERADLLI 225
Query: 276 TEATFLD 282
EAT+L+
Sbjct: 226 HEATYLN 232
>sp|B9LQT0|RNZ_HALLT Ribonuclease Z OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM
5036 / JCM 8891 / ACAM 34) GN=rnz PE=3 SV=1
Length = 310
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 107/262 (40%), Gaps = 45/262 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F++H H DH+ G+P V + G + P TI PP
Sbjct: 35 FDCGEGTQRGMMRFGTGFGIDHLFVSHLHGDHVLGIPGLVQTLGFNDRAEPLTIHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
++D+ L +H + + + ++ GE + VR F+T H SQGYV+
Sbjct: 95 EDDLHDL--VHAVGHDPAFQIRIESVAPGEVALDADGYEVRAFETVHRTKSQGYVLEEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R K ++ + + +G+ +E S VE ++ P + +T DT
Sbjct: 153 RPGRFDRPKAEELGVPVGPKFGRLHEGEPVEAEDGSIVEPDQVVGPPRPGRKFVYTADT- 211
Query: 257 SEFMLNPRN---ADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-------RQAV 306
PR A A A +L+ +ATF DD H + + R A+
Sbjct: 212 -----RPREGTVAVAEDADLLVHDATFADDMEDRARDTAHSTGREAGSVAERAGAKRLAL 266
Query: 307 LKLQSKVSAKVVPLTEGFKSVY 328
+ + S+ +A P+ + +
Sbjct: 267 VHISSRYAADASPIRREAREAF 288
>sp|C4L3C2|RNZ_EXISA Ribonuclease Z OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b)
GN=rnz PE=3 SV=1
Length = 301
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 99/202 (49%), Gaps = 29/202 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASR-GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
V++TH H DH+ GLP ++++R L P T++ P +K+ +E + S ++ L
Sbjct: 56 VWVTHLHGDHVFGLPGFLSTRSALDGTAPLTVYGPKGLKKWLEATLRVTGS--HLGYELT 113
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------YLLRKKLKKQY------IHL 225
+ G+T+ +++D +V K H PS G+ I +LR L ++ I+
Sbjct: 114 VTEYSDGDTF-IQDDHLVTVRKLEHRFPSFGFRIDGPEKPGMLRVDLVRELGVPSGPIYR 172
Query: 226 KGKQIEKLKKSGVE------ITDIILSPEVAFTGDTTSEFMLNPRN-ADALRAKILITEA 278
K+ ++ + G +T+ I VA GDT N R AD A +L+ EA
Sbjct: 173 TIKESDRFEFEGKWYDSKEYVTEPIPGKIVAILGDTIP--CENARKLADG--ADLLVHEA 228
Query: 279 TFLDDEMSIEHAQQHGHTHLSE 300
TF++ E ++ A+++GH+ E
Sbjct: 229 TFMEAEQAL--ARKYGHSTTRE 248
>sp|B9E6P2|RNZ_MACCJ Ribonuclease Z OS=Macrococcus caseolyticus (strain JCSC5402) GN=rnz
PE=3 SV=1
Length = 306
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 51/227 (22%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL--KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FI+H H DHI GLP + SR K T++ P +K+ V+ + I S ++ L
Sbjct: 59 IFISHLHGDHIFGLPGVLTSRSFQGGQDKKLTLYGPTGLKQFVDTVLTI--SCSHLNYPL 116
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKL----------- 218
+++ +D G+ + + NDI + H IPS GY I L+++KL
Sbjct: 117 EIIEIDHGDEFVI-NDIEITVGALKHGIPSFGYRIVMPDTAGNLIKEKLIAEGIAPGPVY 175
Query: 219 KKQYIH----LKGK--QIEKLKKSGVEITDIILSPEVAFTGDTT---SEFMLNPRNADAL 269
K+ +H L GK + K +G + ++ F GDT +E L NAD
Sbjct: 176 KEFKLHEQVTLNGKIYNTKDFKTAGKK------GKKLVFFGDTMPCENEVSL-AENAD-- 226
Query: 270 RAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAK 316
+++ E T+LD ++ + H ++ H+H+ + VL L S S K
Sbjct: 227 ---VVVHECTYLDGDVELSH--KYCHSHIDD-----VLSLVSSGSVK 263
>sp|C5A5S2|RNZ_THEGJ Ribonuclease Z OS=Thermococcus gammatolerans (strain DSM 15229 /
JCM 11827 / EJ3) GN=rnz PE=3 SV=1
Length = 314
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 84/207 (40%), Gaps = 34/207 (16%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPS 154
FD+G R + +FITH H DH GL + + L+N KP I+ P
Sbjct: 34 FDVGEGTIRQMNSAKLSPMRVEKIFITHFHGDHYLGLGGLIQTMNLWNREKPLHIYGPKY 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
E V+ + G ++ ++GET D + FK H IP+ GYV
Sbjct: 94 TFEFVQNFL----NSGFFRPGFEVHVHELGETRLKFKDYEIWSFKVEHGIPALGYVFKEK 149
Query: 215 RKKLK------KQYIHLKGKQIEKLKKSG-VEITDIILSPE-----------VAFTGDTT 256
K+ K QY G + KL+K G +E ++ E V +TGDT
Sbjct: 150 DKRGKFLPEKLAQYGLRPGPILGKLEKDGKIEWNGQVIRLEDVTGPRRRGVKVVYTGDTE 209
Query: 257 SEFMLNPRNADALRAKILITEATFLDD 283
A RA +LI +AT+L D
Sbjct: 210 P---CERVRLFAERADLLIHDATYLSD 233
>sp|B2GBD1|RNZ_LACF3 Ribonuclease Z OS=Lactobacillus fermentum (strain NBRC 3956 / LMG
18251) GN=rnz PE=3 SV=1
Length = 310
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 90/202 (44%), Gaps = 39/202 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRS-----LGNV 172
+FITH H DHI GLP +++SR P TI+ P IK+ V+ ++ S L V
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIYGPKGIKDFVQTALKVSESRLSYPLKFV 118
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
EL D GE ++ + V + H I S GY + L+ +K+++
Sbjct: 119 ELTGD------GEVFKDQT-FTVTARRLDHKIASFGYRVEEAAHPGELMVEKVRQAGIPS 171
Query: 222 ---YIHLKGKQIEKL-KKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRA 271
Y LK ++ L V+ D I +P+ VA GDT T + + AD
Sbjct: 172 GPLYGQLKRGEVVTLPDGRTVDGHDFIGAPQPGRIVAILGDTRVTDNAVKLAKGAD---- 227
Query: 272 KILITEATFLDDEMSIEHAQQH 293
+L+ EATF +E + H H
Sbjct: 228 -VLVHEATFAKNEQRLAHNYYH 248
>sp|O29323|RNZ_ARCFU Ribonuclease Z OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16
/ DSM 4304 / JCM 9628 / NBRC 100126) GN=rnz PE=3 SV=1
Length = 306
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 112/241 (46%), Gaps = 42/241 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH H DH GL + + L N + + V E + LFE + G +LN D+
Sbjct: 58 IFITHLHTDHFIGLFGLIETMSL-NERSRELNVYSPRAEVLRALFE---AFGYDQLNYDI 113
Query: 179 VALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQY------IH 224
++ + E++ D V F+T H++ S GY I R+K +K+ ++
Sbjct: 114 RVRELKDGEEVKFDGFKVVAFRTEHIVKSVGYAIIENDRRGKFNREKAEKELGIPPGPLY 173
Query: 225 LKGKQIEKLKKSGVEIT-DIILSP-----EVAFTGDT--TSEFMLNPRNADALRAKILIT 276
K + E + G IT D++L +V +TGD+ T + RNAD ILI
Sbjct: 174 AKLARGESIVWKGRTITPDMVLGEKRRGRKVVYTGDSRPTKRTVEIARNAD-----ILIH 228
Query: 277 EATFLDDEMSIEHAQQHGHT---HLSEDIRQAVLK------LQSKVSAKVVPLTEGFKSV 327
+A+F +E+ + A + GH+ +E R+A +K + ++ S PL E K V
Sbjct: 229 DASF-KEELK-DWAIESGHSTAKEAAEVAREANVKKLILTHISTRYSKDASPLLEEAKKV 286
Query: 328 Y 328
+
Sbjct: 287 F 287
>sp|Q8TLK5|RNZ_METAC Ribonuclease Z OS=Methanosarcina acetivorans (strain ATCC 35395 /
DSM 2834 / JCM 12185 / C2A) GN=rnz PE=3 SV=1
Length = 305
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 111/254 (43%), Gaps = 46/254 (18%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHR 167
R T + + +F++H H DH G+P + + K P + P+ + +LF +
Sbjct: 46 RAKTGMMSLSSIFVSHFHADHFLGIPGLIQTMSFMGRKDPLMIYGPAGTREFTELF---K 102
Query: 168 SLGNVELNLDLVALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
+LG L ++ +++ G+ E VVR +T H PS GY L+ ++
Sbjct: 103 ALGYFNLKYEIHGMELKPGDVVEGEG-YVVRALETEHSTPSLGYA--LIENPRPGRFNRE 159
Query: 226 K--------GKQIEKLKKSG-VEITDIILSPE-----------VAFTGDTT-SEFMLNP- 263
K G KL+K VE ++ PE + ++GDT E +L
Sbjct: 160 KAVALGVPPGPLFSKLQKGNPVEAGGKVVRPEEVMGTPRPGRTIVYSGDTRPCEAVLEAS 219
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE--------DIRQAVLK-LQSKVS 314
R+AD +LI + +F DEM+ E A++ H+ E +R+ VL + S+ +
Sbjct: 220 RDAD-----LLIHDGSFA-DEMA-EWAEESMHSTAGEVAALAKEAGVRKLVLTHISSRYT 272
Query: 315 AKVVPLTEGFKSVY 328
V P+ + K V+
Sbjct: 273 DDVEPILKDSKKVF 286
>sp|Q4J9A4|RNZ_SULAC Ribonuclease Z OS=Sulfolobus acidocaldarius (strain ATCC 33909 /
DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rnz
PE=3 SV=1
Length = 292
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 34/205 (16%)
Query: 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
++ N + I+H H DH+ GLP + + +Y+ + + + P+ +D K H
Sbjct: 51 MKLNLIGISHLHGDHVLGLPGIIQTMAMYSRQQKLLLMGPTTLQDYLKSSSKHTYF-KPG 109
Query: 174 LNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHLKG 227
+ + ++YE +N + + F+T H I S G++I K +LKK+ I
Sbjct: 110 FETEFI-----QSYEDQN-LTITTFRTCHTIESYGFLIKEKDKTKVDAERLKKEGI-TDW 162
Query: 228 KQIEKLKKSG-VEITDIILSPE----------VAFTGDTT-SEFMLNPRNADALRAKILI 275
+ I KLK+ VEI + PE +A+TGDT + +LN +LI
Sbjct: 163 RIIRKLKEGKRVEIDTKVFLPEDYLYVKKGLSIAYTGDTAPCDSVLNAIKG----VDLLI 218
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSE 300
++TFL++ A +GH++ ++
Sbjct: 219 HDSTFLNE----REAHDYGHSNCTD 239
>sp|Q8EQ58|RNZ_OCEIH Ribonuclease Z OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM
11309 / KCTC 3954 / HTE831) GN=rnz PE=3 SV=1
Length = 306
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FITH H DHI GLP +++SR + +P I+ P IKE VE + ++ + +
Sbjct: 59 IFITHLHGDHIYGLPGFLSSRSFQSGENQPLCIYGPIGIKEFVESTLRLSQTNLTYPITI 118
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK-------QY 222
+ D G +E N+++V K H I S GY I LL KLK+ Y
Sbjct: 119 KEITED-GNLFET-NEMMVETKKLQHGIDSYGYRIKEKDKPGELLVDKLKQIGIAPGPIY 176
Query: 223 IHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNP--RNADALRAKILI 275
+K +I L + + +L P ++ GDT P + +D IL+
Sbjct: 177 QQIKENEITTLDNGSIIYRNDVLGPAKKGKVISILGDTRYSIDHIPFIKFSD-----ILV 231
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVS 314
E+TF D+ + H S +++ A L ++ ++
Sbjct: 232 HESTFTQDKELLAFEYNH-----STNVQAAKLAKEANIN 265
>sp|B6YT50|RNZ_THEON Ribonuclease Z OS=Thermococcus onnurineus (strain NA1) GN=rnz PE=3
SV=1
Length = 311
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 85/210 (40%), Gaps = 38/210 (18%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPS 154
FD+G R + + +FITH H DH GL + + L+N KP I+ P
Sbjct: 34 FDVGEGTMRQMSTAKLSPMKVEKIFITHFHGDHYLGLAALIQTMNLWNREKPLHIYGPKY 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
++ + G D+ ++GE D + FK H IP+ GYV
Sbjct: 94 TFRFIQNFL----NSGFFRPGFDIHVHEIGEVRLKFGDYEIWSFKVEHGIPALGYVFKEK 149
Query: 215 RKKLK------KQYIHLKGKQIEKLKKSG-VEITDIILSPE-----------VAFTGDT- 255
K+ K +Y +G + KL+K G +E I+ E V +TGDT
Sbjct: 150 DKRGKFLPEKLAEYGLSEGPILGKLEKQGQIEWNGRIIRLEDVTGPRRKGVKVVYTGDTE 209
Query: 256 -TSEFMLNPRNADALRAKILITEATFLDDE 284
L NAD +LI EAT+L E
Sbjct: 210 PCERTRLFAENAD-----LLIHEATYLRPE 234
>sp|Q65HN6|RNZ_BACLD Ribonuclease Z OS=Bacillus licheniformis (strain DSM 13 / ATCC
14580) GN=rnz PE=3 SV=1
Length = 307
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 92/213 (43%), Gaps = 31/213 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP V+SR + P T++ P IK +E ++ +
Sbjct: 59 IFITHLHGDHVYGLPGLVSSRSFQGGEGPLTVYGPQGIKTFLETALDV----SGTHVTYP 114
Query: 178 LVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQI 230
LV ++GE +D +V H IP+ GY + L + K+ G
Sbjct: 115 LVIKEIGEGTVFEDDQFIVTARSVSHGIPAFGYRVQEKDVPGALDAEALKEIGVSPGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLNPRNADALRAKILIT 276
+KL K+G +T D I P+ VAF+GDT N + A +A +LI
Sbjct: 175 QKL-KNGETVTLEDGRTIHGADFIGPPKKGRIVAFSGDTRP--CENVKRL-AEKADVLIH 230
Query: 277 EATFLDDEMSIEHAQQHGHT-HLSEDIRQAVLK 308
EATF + + H + +E R+A K
Sbjct: 231 EATFAKGDRELAGDYYHSTSEQAAETAREACAK 263
>sp|Q58897|RNZ_METJA Ribonuclease Z OS=Methanocaldococcus jannaschii (strain ATCC 43067
/ DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rnz
PE=1 SV=2
Length = 317
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 38/218 (17%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI G+P + S G + K IF P KE +E ++ +E
Sbjct: 57 NHIFITHLHGDHILGIPGLLQSMGFFGREKELKIFGPEGTKEIIENSLKLGTHY--IEFP 114
Query: 176 LDLVALDVGE---TYEMRN-DIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHL 225
+ + + E Y+ N +I+ P T H IPS Y+ ++K K KK + +
Sbjct: 115 IKVYEIYTKEPITIYKEENYEIIAYP--TEHGIPSYAYIFKEIKKPRLDIEKAKKLGVKI 172
Query: 226 KGKQIEKLKKSGVEITDI---ILSPE-----------VAFTGDT--TSEFMLNPRNADAL 269
G ++KL K+G + +I I+ PE +A++GDT +F + L
Sbjct: 173 -GPDLKKL-KNGEAVKNIYGEIIKPEYVLLPPKKGFCLAYSGDTLPLEDF---GKYLKEL 227
Query: 270 RAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVL 307
+LI EATF D+ + + A+++ H+ + + + A L
Sbjct: 228 GCDVLIHEATF--DDSAKDAAKENMHSTIGDAVNIAKL 263
>sp|C5D428|RNZ_GEOSW Ribonuclease Z OS=Geobacillus sp. (strain WCH70) GN=rnz PE=3 SV=1
Length = 308
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 28/196 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P TI+ P I+ +E + S ++ +L
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGDTPLTIYGPKGIQAFIE--ISLSVSYTRLKYDLQ 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLK---------KQ 221
+V ++ G +E +V+ + H IPS G+ + LL KLK Q
Sbjct: 117 VVEIEEGTIFEDERFLVIAK-QLDHGIPSYGFRVVEKDLPGTLLVDKLKVLGIRPGPIYQ 175
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITE 277
I L GK ++ + ++ D + P+ V GDT A A +L+ E
Sbjct: 176 QIKL-GKTVQLDNGTVIDGRDFVGPPQKGRIVTILGDTR---YCEASVELAKEADVLVHE 231
Query: 278 ATFLDDEMSIEHAQQH 293
ATF ++ ++ H H
Sbjct: 232 ATFAAEDSALAHDYFH 247
>sp|A6UUY8|RNZ_META3 Ribonuclease Z OS=Methanococcus aeolicus (strain Nankai-3 / ATCC
BAA-1280) GN=rnz PE=3 SV=1
Length = 322
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 94/217 (43%), Gaps = 54/217 (24%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R + + N +FI+H H DHI GL + S G +P I+ PP
Sbjct: 33 FDCGEGTQRQMIYTDISPMKINNIFISHLHGDHILGLAGLLQSIGFNGRTEPINIYGPPE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMR----NDIVVRPFKTHHVIPSQGYV 210
IK +E + +I G +N + ++ M+ + + +H IP Y+
Sbjct: 93 IKNTIENILKI----GYHSINFKITVHEINSKKPMKIIDSEKYMAYAYPVNHSIPCYAYI 148
Query: 211 IYLLRKKLKKQYIHLK---------GKQIEKLK-------KSGVEI--TDIILSPE---- 248
+ K+ KK ++LK G ++ LK K+G I D++L P+
Sbjct: 149 L----KEKKKPQLNLKKAMELGVEVGPDLKSLKDGNEVKLKNGKIIYPNDVLLPPKDSMC 204
Query: 249 VAFTGDTT-----SEFMLNPRNADALRAKILITEATF 280
VA++GDT EF+ +++ +LI EATF
Sbjct: 205 VAYSGDTMPIEDFGEFL------NSIGCTVLIHEATF 235
>sp|Q6LYT2|RNZ_METMP Ribonuclease Z OS=Methanococcus maripaludis (strain S2 / LL) GN=rnz
PE=3 SV=1
Length = 308
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 57/250 (22%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R I + N +FITH H DH+ GLP + S K P I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFITHLHGDHVLGLPGLLQSIAFQGRKKPLNIYGPAE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ +E + + + +N+ ++ E N+ V + H +P+ YV
Sbjct: 93 TVKMIEHILGVGYHSIDYPINVHEISSKTPERIIFTNNYEVFSYPVVHSVPALAYVF--- 149
Query: 215 RKKLKKQYIHLKGKQIEKLKKSGVEI----------------------TDIILSPE---- 248
K++KK + L EK+KK G+EI D+ L P+
Sbjct: 150 -KQVKKPRMDL-----EKVKKLGIEIGPDLKRLKDGFNVELNGEIITLNDVTLPPKKGIC 203
Query: 249 VAFTGDTT-----SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIR 303
V ++GDT +EF+ L+ LI EATF D+ +A++ H+ ++ +
Sbjct: 204 VGYSGDTIPLKEFAEFL------KELKCNTLIHEATF--DKTMERNAKETLHSTATDALN 255
Query: 304 QAVLKLQSKV 313
A L S V
Sbjct: 256 IAKLSGVSTV 265
>sp|Q3IRM5|RNZ_NATPD Ribonuclease Z OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=rnz PE=3 SV=1
Length = 308
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 101/254 (39%), Gaps = 45/254 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + FITH H DHI GLP + + + + P +++VP
Sbjct: 35 FDCGEGTQRQMMRFGTGFAVSKAFITHLHGDHILGLPGLLQTMDFNDREEPLSVYVPSGK 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR 215
+ ++ L I + G + + + G+ +D +R F+T H S GY +
Sbjct: 95 QAELRDL--IDTAAGAPSFPVHVNGVSDGQVVVDADDYEIRAFETDHDARSLGYALIEAS 152
Query: 216 KKL----------------KKQYIHLKGKQIEKLKKSGVEITDIILSP----EVAFTGDT 255
+K K Q +H G+ +E + VE ++ P V +TGDT
Sbjct: 153 RKGRFDRERAEELGVPVGPKFQQLH-AGEAVELEDGTVVEPEQVVGDPRPGRRVVYTGDT 211
Query: 256 --TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDI-------RQAV 306
T + NAD +LI +ATF D H + DI R A+
Sbjct: 212 RPTDRTVTVAENAD-----LLIHDATFATDNADRAARTAHSTAAEAADIASRADARRLAL 266
Query: 307 LKLQSKVSAKVVPL 320
+ + S+ + P+
Sbjct: 267 VHISSRYAGDPSPI 280
>sp|C3MPH2|RNZ_SULIL Ribonuclease Z OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen
#1) GN=rnz PE=3 SV=1
Length = 291
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 41/220 (18%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
ITH H DH+ GL +AS GL + K I P +K+ + FE + N ++ +
Sbjct: 59 ITHMHGDHVFGLLGVIASMGLLDRKETLYILGPRDLKDFLYTSFEYSKF--NPSFKIEFI 116
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-----YLLRKKLKKQYIHLKGKQIEKLK 234
+ Y +N I + FKT H + SQGY+I + ++ ++ + + KLK
Sbjct: 117 -----DNYNDQN-ITIATFKTCHTVESQGYLISERDRVKIDEEKLEKEKIKDWRVMRKLK 170
Query: 235 KS-GVEITDIILSPE----------VAFTGDT--TSEFMLNPRNADALRAKILITEATFL 281
+ VE L PE VA+TGDT + + + AD +LI ++TFL
Sbjct: 171 EGKTVEYNGKFLKPEDYLVIKRGLKVAYTGDTIPCQSVIESVKGAD-----LLIHDSTFL 225
Query: 282 DDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
++ A +GH+++++ + A+ + S K++ LT
Sbjct: 226 NE----PSAFTYGHSNVADAAKVAL-----EASVKLLALT 256
>sp|C0ZBP8|RNZ_BREBN Ribonuclease Z OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC
100599) GN=rnz PE=3 SV=1
Length = 318
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 13/133 (9%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP--TIFVPPSIKEDVEKLFEI 165
R P + Q + +FITH H DH+ GL +ASR L N +P ++ PP + + E
Sbjct: 47 RAPMKISQLDKIFITHLHGDHLYGLIGLLASRSLRNTEPTPLELYGPPGLDRYFRGIMEA 106
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
S +++ L++ + G YE +IVV H +PS Y + + K+ +
Sbjct: 107 --SPVHLQYPLEIKIVSEGVIYE-DEEIVVSCRMAKHRVPSFAYAV--MEKEKTGAF--- 158
Query: 226 KGKQIEKLKKSGV 238
Q+E+ K++GV
Sbjct: 159 ---QVERAKQAGV 168
>sp|A6VFJ7|RNZ_METM7 Ribonuclease Z OS=Methanococcus maripaludis (strain C7 / ATCC
BAA-1331) GN=rnz PE=3 SV=1
Length = 310
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 103/236 (43%), Gaps = 41/236 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R I + N +FI+H H DHI G+P + S KP I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFISHLHGDHILGIPGLMQSIAFQGRTKPLNIYGPKE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ +E + + + +N+ ++ E ++ V F H +P+ YV +
Sbjct: 93 TAKMIENILNVGYHSIDYPINVYEISAKSPEKIISSDNYEVFSFPVVHSVPALAYVFKQV 152
Query: 215 RK------KLKKQYIHLKGKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTT 256
+K K+ K I + G +++LK +E+ I++P+ V ++GDT
Sbjct: 153 KKPRMDLEKVNKLGIEI-GPDLKRLKDGFNIELNGKIITPDDVTVPPKKGICVGYSGDTI 211
Query: 257 -----SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVL 307
+EF+ L+ LI EATF D+ ++A++ H+ +S+ + A L
Sbjct: 212 PLNEFAEFL------KELKCTTLIHEATF--DKSMDKNAKETLHSTVSDALNIAKL 259
>sp|Q49XV1|RNZ_STAS1 Ribonuclease Z OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=rnz PE=3 SV=1
Length = 306
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 90/223 (40%), Gaps = 40/223 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGEGKPLTLIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK +E + S +LN + +++ +N+ V +H IPS GY I
Sbjct: 96 GIKAYIETTLRLSES----KLNYPITYIEIENHLSYQNNGFNVEAHMLNHGIPSFGYRIE 151
Query: 213 LLRKKLKKQYIHLKG------------KQIEKLKKSGVEIT------DIILSPEVAFTGD 254
K LK K E + +G+ D + P +A GD
Sbjct: 152 APYTSGKIDVSALKEIGLEPGPKYQDVKNNETFEYNGIIYNSKDFKGDAVKGPVIAIFGD 211
Query: 255 TTSEFMLNPRNAD--ALRAKILITEATFLDDEMSIEHAQQHGH 295
T + +N + A A +++ E+T+++ + S+ + H H
Sbjct: 212 T-----MPCQNEEIIADHANVMVHESTYIEGDKSLANNYHHSH 249
>sp|C3MYG0|RNZ_SULIM Ribonuclease Z OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka
#1) GN=rnz PE=3 SV=1
Length = 291
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 41/220 (18%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
ITH H DH+ GL +AS GL + K I P +K+ + FE + N ++ +
Sbjct: 59 ITHMHGDHVFGLLGVIASMGLLDRKETLYILGPRDLKDFLYTSFEYSKF--NPSFKIEFI 116
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-----YLLRKKLKKQYIHLKGKQIEKLK 234
+ Y +N I + FKT H + SQGY+I + ++ ++ + + KLK
Sbjct: 117 -----DNYNDQN-ITIATFKTCHTVESQGYLISERDRVKIDEEKLEKEKIKDWRVMRKLK 170
Query: 235 KS-GVEITDIILSPE----------VAFTGDT--TSEFMLNPRNADALRAKILITEATFL 281
+ VE L PE VA+TGDT + + + D +LI ++TFL
Sbjct: 171 EGKTVEYNGKFLKPEDYLVIKRGLKVAYTGDTIPCQSVIESVKGVD-----LLIHDSTFL 225
Query: 282 DDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
++ A +GH+++++ + A+ + S K++ LT
Sbjct: 226 NE----PSACTYGHSNVADAAKVAL-----EASVKLLALT 256
>sp|C4KGQ7|RNZ_SULIK Ribonuclease Z OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka
#3) GN=rnz PE=3 SV=1
Length = 291
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 41/220 (18%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
ITH H DH+ GL +AS GL + K I P +K+ + FE + N ++ +
Sbjct: 59 ITHMHGDHVFGLLGVIASMGLLDRKETLYILGPRDLKDFLYTSFEYSKF--NPSFKIEFI 116
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-----YLLRKKLKKQYIHLKGKQIEKLK 234
+ Y +N I + FKT H + SQGY+I + ++ ++ + + KLK
Sbjct: 117 -----DNYNDQN-ITIATFKTCHTVESQGYLISERDRVKIDEEKLEKEKIKDWRVMRKLK 170
Query: 235 KS-GVEITDIILSPE----------VAFTGDT--TSEFMLNPRNADALRAKILITEATFL 281
+ VE L PE VA+TGDT + + + D +LI ++TFL
Sbjct: 171 EGKTVEYNGKFLKPEDYLVIKRGLKVAYTGDTIPCQSVIESVKGVD-----LLIHDSTFL 225
Query: 282 DDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
++ A +GH+++++ + A+ + S K++ LT
Sbjct: 226 NE----PSACTYGHSNVADAAKVAL-----EASVKLLALT 256
>sp|C3N554|RNZ_SULIA Ribonuclease Z OS=Sulfolobus islandicus (strain M.16.27) GN=rnz
PE=3 SV=1
Length = 291
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 41/220 (18%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
ITH H DH+ GL +AS GL + K I P +K+ + FE + N ++ +
Sbjct: 59 ITHMHGDHVFGLLGVIASMGLLDRKETLYILGPRDLKDFLYTSFEYSKF--NPSFKIEFI 116
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-----YLLRKKLKKQYIHLKGKQIEKLK 234
+ Y +N I + FKT H + SQGY+I + ++ ++ + + KLK
Sbjct: 117 -----DNYNDQN-ITIATFKTCHTVESQGYLISERDRVKIDEEKLEKEKIKDWRVMRKLK 170
Query: 235 KS-GVEITDIILSPE----------VAFTGDT--TSEFMLNPRNADALRAKILITEATFL 281
+ VE L PE VA+TGDT + + + D +LI ++TFL
Sbjct: 171 EGKTVEYNGKFLKPEDYLVIKRGLKVAYTGDTIPCQSVIESVKGVD-----LLIHDSTFL 225
Query: 282 DDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
++ A +GH+++++ + A+ + S K++ LT
Sbjct: 226 NE----PSACTYGHSNVADAAKVAL-----EASVKLLALT 256
>sp|Q74MH2|RNZ_NANEQ Ribonuclease Z OS=Nanoarchaeum equitans (strain Kin4-M) GN=rnz PE=3
SV=1
Length = 316
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 101/229 (44%), Gaps = 42/229 (18%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLP--MYVASRGLYNLKPPTIFVPP 153
FD G R + Q +++F+TH H DHI GLP + S YN + TIF P
Sbjct: 32 FDAGENTQRQMRLLNLSPTQIDYIFLTHIHGDHILGLPGILLSLSNQDYN-RELTIFGPK 90
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV--- 210
IKE +EK+ + S + +N L ++GET + H +P Y
Sbjct: 91 GIKEVIEKIID---SFA-ININFPLKIKEIGETKIDFGPFYIESIYGIHQVPVLAYSFKE 146
Query: 211 ---IYLLRKKLKKQYIHLKGKQIEKLKKS-GVEITDIILSPE--------VAFTGDTTS- 257
I + ++KL K I ++ KLK+ V I I L P+ + FT T +
Sbjct: 147 KDKIKINKEKLAKYNIR-SNPKLAKLKEGKSVTINGITLDPKEFTYIQKGLKFTLITDTL 205
Query: 258 ---EFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIR 303
+F+ R++D I+ E FLD + + A +H H+ +S+ R
Sbjct: 206 FREQFIDFARDSD-----IIFHELAFLDKDK--DKAIEHYHSTISDAFR 247
>sp|A4FXT9|RNZ_METM5 Ribonuclease Z OS=Methanococcus maripaludis (strain C5 / ATCC
BAA-1333) GN=rnz PE=3 SV=1
Length = 314
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 108/250 (43%), Gaps = 46/250 (18%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R I + N +FI+H H DH+ G+P + S KP I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFISHLHGDHVLGIPGLLQSIAFQGRTKPLNIYGPEE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ ++ + + + +N+ ++ E ++ V F H +P+ YV +
Sbjct: 93 TAKMIKNILNVGYHSIDYPINVYEISSKTSEKIISTDNYDVFSFPVVHSVPAVAYVFRQV 152
Query: 215 RK------KLKKQYIHLKGKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTT 256
+K K+ K I + G +++LK VE+ I++PE V ++GDT
Sbjct: 153 KKPRMDLEKVNKLGIEI-GPDLKRLKDGYNVELNGKIITPEDVTLPPKKGICVGYSGDTI 211
Query: 257 --SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQS 311
+EF AD L+ ILI EATF D+ ++A++ H+ + + L +
Sbjct: 212 PLNEF------ADFLKELKCTILIHEATF--DKTMDKNAKETLHSTVHD-----ALNIAK 258
Query: 312 KVSAKVVPLT 321
+ A V LT
Sbjct: 259 RSGANTVILT 268
>sp|Q9KC61|RNZ_BACHD Ribonuclease Z OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=rnz PE=3 SV=1
Length = 309
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 27/207 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P ++ P I+ VE ++ + EL ++
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGENPLFLYGPKGIRSFVETALQVSNTHVKYELTIE 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIH------ 224
+ + G + V HV+P + + LL +LK + +
Sbjct: 119 EFS-EPGLLFH-EEGFKVETILLDHVMPCYAFKVTEDDRPGELLVDRLKAKGVPPGPLYR 176
Query: 225 --LKGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
+G+ +E +E + P+ GDT L P A +LI EA
Sbjct: 177 KIQQGETVELPTGERLEANAFLGPPKRGRSFVLAGDTRPVKELIPF---AKNVNVLIHEA 233
Query: 279 TFLDDEMSIEHAQQHGHTHLSEDIRQA 305
TFLDD+ HA ++GH+ +++ I+ A
Sbjct: 234 TFLDDKKG--HAHEYGHSTMADAIQLA 258
>sp|Q03W55|RNZ_LEUMM Ribonuclease Z OS=Leuconostoc mesenteroides subsp. mesenteroides
(strain ATCC 8293 / NCDO 523) GN=rnz PE=3 SV=1
Length = 318
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 34/222 (15%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + +FITH H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFITHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVI 211
+KE V+ I + + ++ V L G +E +V P + H I + G+ +
Sbjct: 96 KGVKEFVQTALRISET--RLSYPIEYVDLTEGVIFEDHTFQVVAAPMR--HRIETWGFRV 151
Query: 212 Y-------LLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPEVAFTGDTTS----EF 259
LL KLK+ I G +LK V + D + F G F
Sbjct: 152 IEKDHPGELLVDKLKQGNIP-SGPVYGQLKAGKTVTLPDGRIVNGHDFIGKAQKGRIVTF 210
Query: 260 MLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHT 296
+L+ R D A A +L+ E+T+ E + A+ H H+
Sbjct: 211 ILDTRPNDNVEWLAKNADVLVHESTYGSSEEEAKMAKAHAHS 252
>sp|C3NDQ2|RNZ_SULIY Ribonuclease Z OS=Sulfolobus islandicus (strain Y.G.57.14 /
Yellowstone #1) GN=rnz PE=3 SV=1
Length = 291
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 41/220 (18%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
ITH H DH+ GL +AS GL + K I P +K+ + FE + N ++ +
Sbjct: 59 ITHMHGDHVFGLLGVIASMGLLDRKETLYILGPRDLKDFLYTSFEYSKF--NPSFKIEFI 116
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-----YLLRKKLKKQYIHLKGKQIEKLK 234
+ Y +N I + FKT H + SQGY+I + ++ ++ + + KLK
Sbjct: 117 -----DNYNDQN-ITIATFKTCHTVESQGYLISERDRVKIDEEKLEKEKIKDWRVMRKLK 170
Query: 235 KS-GVEITDIILSPE----------VAFTGDT--TSEFMLNPRNADALRAKILITEATFL 281
+ VE L PE VA+TGDT + + + D +LI ++TFL
Sbjct: 171 EGKTVEYNGKFLKPEDYLVIKRGLKVAYTGDTIPCQSVIESVKGVD-----LLIHDSTFL 225
Query: 282 DDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
++ A +GH+++++ + A+ + S K++ LT
Sbjct: 226 NE----PSAFTYGHSNVADAAKVAL-----EASVKLLALT 256
>sp|C3NHZ9|RNZ_SULIN Ribonuclease Z OS=Sulfolobus islandicus (strain Y.N.15.51 /
Yellowstone #2) GN=rnz PE=3 SV=1
Length = 291
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 41/220 (18%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
ITH H DH+ GL +AS GL + K I P +K+ + FE + N ++ +
Sbjct: 59 ITHMHGDHVFGLLGVIASMGLLDRKETLYILGPRDLKDFLYTSFEYSKF--NPSFKIEFI 116
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-----YLLRKKLKKQYIHLKGKQIEKLK 234
+ Y +N I + FKT H + SQGY+I + ++ ++ + + KLK
Sbjct: 117 -----DNYNDQN-ITIATFKTCHTVESQGYLISERDRVKIDEEKLEKEKIKDWRVMRKLK 170
Query: 235 KS-GVEITDIILSPE----------VAFTGDT--TSEFMLNPRNADALRAKILITEATFL 281
+ VE L PE VA+TGDT + + + D +LI ++TFL
Sbjct: 171 EGKTVEYNGKFLKPEDYLVIKRGLKVAYTGDTIPCQSVIESVKGVD-----LLIHDSTFL 225
Query: 282 DDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321
++ A +GH+++++ + A+ + S K++ LT
Sbjct: 226 NE----PSAFTYGHSNVADAAKVAL-----EASVKLLALT 256
>sp|Q5KXG8|RNZ_GEOKA Ribonuclease Z OS=Geobacillus kaustophilus (strain HTA426) GN=rnz
PE=3 SV=1
Length = 307
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 32/201 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + + P T+F P I+ VE + + ELN
Sbjct: 59 IFITHLHGDHLFGLPGLLGSRSFQSGETPLTVFGPKGIRSFVETALAVSGTKLRYELN-- 116
Query: 178 LVALDVGETY-EMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V +D G + + R ++ + + H +PS G+ + LL ++L+ Y
Sbjct: 117 IVEIDEGVIFDDERFSVIAK--RLDHGMPSYGFRVVEKDLPGPLLVERLQALGVRPGPIY 174
Query: 223 IHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTT-SEFMLN-PRNADALRAKILI 275
+K GK + + ++ + + P+ VA GDT E + R+AD +++
Sbjct: 175 QEIKQGKTVVLDDGTVIDGREFVGPPQKGRIVAVLGDTRFCEAAIELARDAD-----VVV 229
Query: 276 TEATFLDDEMSIEHAQQHGHT 296
EATF E + H H T
Sbjct: 230 HEATFAAAEQRLAHDYFHSTT 250
>sp|A9AB37|RNZ_METM6 Ribonuclease Z OS=Methanococcus maripaludis (strain C6 / ATCC
BAA-1332) GN=rnz PE=3 SV=1
Length = 308
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 35/233 (15%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R I + N +FI+H H DHI GLP + S KP I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFISHLHGDHILGLPGLLQSVAFQGRTKPLNIYGPEE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ +E + + + +N+ ++ E ++ V F H +P+ YV +
Sbjct: 93 TAKMLENILNVGYHSIDYPINVYEISSKTPEKIISTDNYEVYSFPVVHSVPALAYVFRQV 152
Query: 215 RK------KLKKQYIHLKGKQIEKLKKS-GVEIT-------DIILSPE----VAFTGDTT 256
+K K+ K I + G +++LK VE+ D+ L P+ V ++GDT
Sbjct: 153 KKPRMDLEKVNKLGIEI-GPDLKRLKDGFSVELNGKIITLEDVTLPPKKGICVGYSGDTI 211
Query: 257 --SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVL 307
+EF R L+ LI EATF D+ ++A++ H+ + + + A L
Sbjct: 212 PLNEFAEFLRE---LKCTTLIHEATF--DKTMDKNAKETLHSTVHDALNIAKL 259
>sp|A1U2M9|RNZ_MARAV Ribonuclease Z OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM
11845 / VT8) GN=rnz PE=3 SV=1
Length = 323
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 19/162 (11%)
Query: 87 SIGGHETCVIIPELKCAFDIG--------RCPTRAIQQNFVFITHGHLDHIGGLP-MYVA 137
++ G C+ P+ D G R +Q +FITH H DHI GLP + +
Sbjct: 18 NVTGLALCLSGPKPWYLVDCGEGTQHQLMRTRYSVMQLRAMFITHIHGDHIFGLPGLLTS 77
Query: 138 SRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRP 197
+ L +P I PP ++ ++ + E S ++ L+ + + + Y + + V
Sbjct: 78 ASMLGRTEPLDIIAPPQVRRFIDAVIE--NSDSSLSYPLNFINSEAPDFYWQDDHLGVTN 135
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVE 239
H +P + YV + L++Q Q EKL G+E
Sbjct: 136 VALSHRVPCRAYV--FTERNLERQL------QKEKLVADGIE 169
>sp|A8ADW5|RBN_CITK8 Ribonuclease BN OS=Citrobacter koseri (strain ATCC BAA-895 / CDC
4225-83 / SGSC4696) GN=rbn PE=3 SV=1
Length = 305
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + N +P TI+ P I+E E + S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMAGNAQPLTIYGPKGIREFTETALRLSGSW--TDYPLE 117
Query: 178 LVALDVGETYEMRNDIV--VRPFKTHHVIPSQGYVI 211
+V + G E+ ND + V F H + GY I
Sbjct: 118 IVEITAG---EILNDGLRKVTAFALEHPLECYGYRI 150
>sp|Q0TFH3|RBN_ECOL5 Ribonuclease BN OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC)
GN=rbn PE=3 SV=1
Length = 305
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 150
>sp|B7NNU8|RBN_ECO7I Ribonuclease BN OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC)
GN=rbn PE=3 SV=1
Length = 305
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI 211
+V + GE ++ +R V + H + GY I
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRI 150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,510,304
Number of Sequences: 539616
Number of extensions: 5190988
Number of successful extensions: 16541
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 239
Number of HSP's that attempted gapping in prelim test: 16379
Number of HSP's gapped (non-prelim): 327
length of query: 330
length of database: 191,569,459
effective HSP length: 118
effective length of query: 212
effective length of database: 127,894,771
effective search space: 27113691452
effective search space used: 27113691452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)