Query 020181
Match_columns 330
No_of_seqs 327 out of 2503
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:40:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02649 true_RNase_BN ribonu 100.0 4.3E-38 9.2E-43 293.0 21.7 226 90-329 15-274 (303)
2 TIGR02650 RNase_Z_T_toga ribon 100.0 4.5E-38 9.7E-43 283.0 19.0 232 83-329 2-249 (277)
3 TIGR02651 RNase_Z ribonuclease 100.0 5E-36 1.1E-40 278.5 21.9 225 90-329 16-272 (299)
4 PRK02113 putative hydrolase; P 100.0 8E-37 1.7E-41 277.2 14.0 216 42-329 2-228 (252)
5 PRK11244 phnP carbon-phosphoru 100.0 4.1E-36 8.9E-41 272.3 17.1 216 42-329 2-226 (250)
6 PRK05184 pyrroloquinoline quin 100.0 1.2E-35 2.6E-40 275.8 15.2 232 42-328 2-273 (302)
7 COG1234 ElaC Metal-dependent h 100.0 8.3E-35 1.8E-39 268.3 19.8 219 90-329 18-262 (292)
8 PRK02126 ribonuclease Z; Provi 100.0 6.5E-34 1.4E-38 266.7 20.8 227 91-329 15-318 (334)
9 TIGR02108 PQQ_syn_pqqB coenzym 100.0 8.5E-35 1.8E-39 269.3 13.7 230 43-328 2-273 (302)
10 TIGR03307 PhnP phosphonate met 100.0 5.7E-32 1.2E-36 243.4 17.7 206 51-328 1-215 (238)
11 KOG2121 Predicted metal-depend 99.9 6.3E-28 1.4E-32 236.1 8.7 208 80-329 442-691 (746)
12 PRK00055 ribonuclease Z; Revie 99.9 9.3E-27 2E-31 212.7 15.1 196 90-329 18-238 (270)
13 PF12706 Lactamase_B_2: Beta-l 99.9 1.3E-22 2.8E-27 176.0 17.3 174 101-324 2-194 (194)
14 TIGR00649 MG423 conserved hypo 99.9 2.9E-20 6.3E-25 180.8 20.0 156 89-284 13-197 (422)
15 COG1235 PhnP Metal-dependent h 99.8 5E-20 1.1E-24 168.7 8.0 221 41-329 4-240 (269)
16 TIGR03675 arCOG00543 arCOG0054 99.8 5.2E-18 1.1E-22 171.0 19.3 170 81-284 177-378 (630)
17 COG0595 mRNA degradation ribon 99.8 2.3E-17 5.1E-22 162.4 18.3 173 88-309 20-221 (555)
18 PRK04286 hypothetical protein; 99.8 4.5E-18 9.8E-23 157.8 10.8 203 81-327 3-252 (298)
19 PRK00685 metal-dependent hydro 99.7 1E-16 2.2E-21 143.1 16.7 165 93-325 9-194 (228)
20 COG1236 YSH1 Predicted exonucl 99.7 2.2E-16 4.7E-21 153.1 18.2 162 85-285 7-195 (427)
21 KOG1136 Predicted cleavage and 99.7 9.2E-16 2E-20 138.6 13.2 174 84-292 9-218 (501)
22 COG1782 Predicted metal-depend 99.7 2.5E-15 5.3E-20 142.3 16.2 159 91-283 193-383 (637)
23 PRK11709 putative L-ascorbate 99.5 4.1E-13 8.8E-18 127.0 16.7 153 115-324 109-283 (355)
24 PF02112 PDEase_II: cAMP phosp 99.5 2E-13 4.4E-18 127.2 13.0 178 115-327 79-301 (335)
25 smart00849 Lactamase_B Metallo 99.5 1.9E-13 4.2E-18 116.5 12.0 116 90-212 4-133 (183)
26 PRK11921 metallo-beta-lactamas 99.4 4.2E-12 9.1E-17 122.5 13.0 111 87-212 28-153 (394)
27 TIGR03413 GSH_gloB hydroxyacyl 99.3 6.5E-12 1.4E-16 113.7 11.3 97 92-212 10-117 (248)
28 COG5212 PDE1 Low-affinity cAMP 99.3 1.2E-11 2.6E-16 109.3 11.0 177 115-326 112-315 (356)
29 KOG1137 mRNA cleavage and poly 99.3 1.8E-12 4E-17 123.9 6.2 159 91-285 26-214 (668)
30 PLN02469 hydroxyacylglutathion 99.3 4.3E-11 9.3E-16 108.9 12.4 101 91-213 11-123 (258)
31 PRK10241 hydroxyacylglutathion 99.3 3.3E-11 7.1E-16 109.3 11.0 90 99-211 22-119 (251)
32 PRK05452 anaerobic nitric oxid 99.3 5.3E-11 1.2E-15 117.3 13.2 113 87-212 30-157 (479)
33 PLN02398 hydroxyacylglutathion 99.3 5.4E-11 1.2E-15 111.2 12.2 110 81-212 76-197 (329)
34 PF00753 Lactamase_B: Metallo- 99.2 3.3E-10 7.2E-15 96.4 11.7 49 90-138 4-66 (194)
35 PLN02962 hydroxyacylglutathion 99.1 4.2E-10 9E-15 101.8 11.0 99 91-213 22-136 (251)
36 COG0491 GloB Zn-dependent hydr 99.0 2.5E-09 5.5E-14 95.4 11.6 108 100-213 36-159 (252)
37 PF13483 Lactamase_B_3: Beta-l 99.0 1.7E-09 3.7E-14 91.5 9.5 143 93-323 8-163 (163)
38 KOG0813 Glyoxylase [General fu 98.9 1.1E-08 2.4E-13 91.8 10.6 78 114-213 50-128 (265)
39 KOG1361 Predicted hydrolase in 98.8 1.9E-08 4.1E-13 97.0 10.5 124 115-285 112-237 (481)
40 KOG1135 mRNA cleavage and poly 98.8 2.2E-07 4.7E-12 91.7 15.9 159 91-284 14-204 (764)
41 COG2220 Predicted Zn-dependent 98.7 1.1E-06 2.3E-11 80.1 16.0 171 93-325 15-213 (258)
42 COG1237 Metal-dependent hydrol 98.6 4.1E-08 9E-13 87.2 5.8 61 93-157 23-96 (259)
43 TIGR00361 ComEC_Rec2 DNA inter 98.6 7.8E-07 1.7E-11 91.5 15.7 111 81-214 440-573 (662)
44 COG0426 FpaA Uncharacterized f 98.6 2.8E-07 6.2E-12 87.0 11.2 109 87-210 31-154 (388)
45 PRK11539 ComEC family competen 98.5 1.3E-06 2.7E-11 91.2 14.6 109 81-215 501-631 (755)
46 COG2333 ComEC Predicted hydrol 98.5 3.9E-06 8.4E-11 77.3 14.4 104 98-215 62-182 (293)
47 COG2248 Predicted hydrolase (m 98.3 1.2E-05 2.7E-10 71.0 11.3 156 91-279 16-210 (304)
48 KOG0814 Glyoxylase [General fu 98.2 9.9E-06 2.1E-10 67.8 8.5 97 93-213 22-132 (237)
49 PF13691 Lactamase_B_4: tRNase 97.7 2.7E-05 5.9E-10 54.7 3.1 39 93-131 13-63 (63)
50 KOG2121 Predicted metal-depend 97.2 0.00018 3.9E-09 72.3 2.9 160 78-239 48-245 (746)
51 KOG1138 Predicted cleavage and 96.7 0.021 4.5E-07 55.5 11.2 95 115-215 96-232 (653)
52 PF14597 Lactamase_B_5: Metall 96.6 0.003 6.6E-08 53.6 4.2 91 98-212 31-128 (199)
53 KOG3798 Predicted Zn-dependent 96.4 0.056 1.2E-06 48.3 11.3 140 115-305 132-286 (343)
54 COG2015 Alkyl sulfatase and re 96.3 0.018 3.9E-07 55.8 8.3 60 98-158 134-206 (655)
55 COG0595 mRNA degradation ribon 86.3 0.93 2E-05 45.7 4.4 116 206-324 157-303 (555)
56 KOG3592 Microtubule-associated 85.0 0.68 1.5E-05 47.2 2.7 46 93-138 51-104 (934)
57 KOG4736 Uncharacterized conser 84.8 3.2 7E-05 38.1 6.7 38 98-135 103-145 (302)
58 KOG4684 Uncharacterized conser 22.5 62 0.0013 28.4 2.0 20 48-69 72-91 (275)
59 PF06434 Aconitase_2_N: Aconit 22.1 57 0.0012 28.3 1.7 22 226-256 42-63 (204)
No 1
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=100.00 E-value=4.3e-38 Score=293.03 Aligned_cols=226 Identities=24% Similarity=0.316 Sum_probs=176.3
Q ss_pred CceEEEEeC------CcEEEEecCCCCcccc--------cccEEEecCCChhhhCCHHHHHHHhCcCC-CCCCEEEcCcc
Q 020181 90 GHETCVIIP------ELKCAFDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154 (330)
Q Consensus 90 ~~~t~~li~------~~~iLiD~G~~~~~~l--------~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~-~~~l~Iy~~~~ 154 (330)
++++|++++ +..+|||||+++++++ +|++|||||.|+||+.|++.++.++.+.+ .++++||||+.
T Consensus 15 r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~ 94 (303)
T TIGR02649 15 RNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQG 94 (303)
T ss_pred CCccEEEEEccCCCCCCEEEEECCccHHHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechh
Confidence 677888883 2589999999998764 69999999999999999999876554433 46789999999
Q ss_pred hHHHHHHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEcCCCCCceEEEEEeccc--cchhh---hcCC-ChH
Q 020181 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK--KLKKQ---YIHL-KGK 228 (330)
Q Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~~H~~~s~gy~i~~~~~--kl~~~---~~~~-pg~ 228 (330)
+.+.++..+...... ..+.++++++.+++.+..+ +++|+++++.|..+++||+|+++++ +++.+ .+|+ ||+
T Consensus 95 ~~~~l~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~-~~~v~~~~~~H~~~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~ 171 (303)
T TIGR02649 95 IREFVETALRISGSW--TDYPLEIVEIGAGEILDDG-LRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGP 171 (303)
T ss_pred HHHHHHHHHHhcccc--cCCceEEEEcCCCceEecC-CeEEEEEEccCccceEEEEEeccCCcCCCCHHHHHHCCCCCCh
Confidence 998887765432211 1235677888888888876 8999999999999999999987654 56444 7799 799
Q ss_pred HHHHHHHcC-ceeece------------eecCeEEEecCCCCccccCchhhhhcCCCEEEEEEecCCCcccHHHHHhcCC
Q 020181 229 QIEKLKKSG-VEITDI------------ILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295 (330)
Q Consensus 229 ~~~~L~~~G-~~i~~~------------~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~lI~E~t~~~~~~~~~~a~~~~H 295 (330)
++++|++.. +.+.|. ..+++++|+|||.+. +....+++++|+|||||||.++. .+.|..++|
T Consensus 172 ~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~---~~~~~~~~~adlLi~Eat~~~~~--~~~a~~~~H 246 (303)
T TIGR02649 172 LFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPC---DAALDLAKGVDVMVHEATLDITM--EAKANSRGH 246 (303)
T ss_pred HHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCCh---HHHHHHhcCCCEEEEeccCChhh--HHHHhhcCC
Confidence 999998733 222221 246789999999984 23345789999999999998776 566778999
Q ss_pred CCchhHHHHHHHhcccccCCceEEEeccccCcCC
Q 020181 296 THLSEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 329 (330)
Q Consensus 296 ~t~~~~~~~~l~~~~~~~~~~~~i~ltHfs~ry~ 329 (330)
+|++|++..+ ++++.. .++|+|||+||.
T Consensus 247 ~t~~~a~~~a-~~~~~k-----~lvL~H~s~~y~ 274 (303)
T TIGR02649 247 SSTRQAATLA-REAGVG-----KLIITHVSSRYD 274 (303)
T ss_pred CCHHHHHHHH-HHcCCC-----EEEEEEeccccC
Confidence 9999887776 344433 689999999996
No 2
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=100.00 E-value=4.5e-38 Score=282.97 Aligned_cols=232 Identities=18% Similarity=0.159 Sum_probs=185.9
Q ss_pred EEEEEecCceEEEEeCCcEEEEe-cCCCCcccc-----cccEEEecCCChhhhCCHHHHHHHhCcC--CCCCCEEEcCcc
Q 020181 83 IEGVSIGGHETCVIIPELKCAFD-IGRCPTRAI-----QQNFVFITHGHLDHIGGLPMYVASRGLY--NLKPPTIFVPPS 154 (330)
Q Consensus 83 i~g~~~g~~~t~~li~~~~iLiD-~G~~~~~~l-----~i~~IfiTH~H~DHi~Gl~~l~~~~~~~--~~~~l~Iy~~~~ 154 (330)
|.|.+.+.-.|++.+...++||| +|++....+ .+++|||||+|.||++|++.++..+.+. +.+|+.||+|++
T Consensus 2 ~~g~s~a~~~t~~~~~~~~ilfD~ag~g~~~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g 81 (277)
T TIGR02650 2 IIGFFKAAFFSTIIYSPEEIIFDAAEEGSSTLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKE 81 (277)
T ss_pred ceeeechhheEEEEECchhheehhhcccchhHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcc
Confidence 56788889999999988899999 999987654 7999999999999999998776534333 567889999999
Q ss_pred hHHHHHHHHHHhhhcCC-cccceEEEEcCCCCEEEeCCc---EEEEEEEcCCCC---CceEEEEEeccccchhhhcCCCh
Q 020181 155 IKEDVEKLFEIHRSLGN-VELNLDLVALDVGETYEMRND---IVVRPFKTHHVI---PSQGYVIYLLRKKLKKQYIHLKG 227 (330)
Q Consensus 155 ~~~~l~~~~~~~~~~~~-~~~~~~~~~i~~g~~~~i~~~---~~v~~~~~~H~~---~s~gy~i~~~~~kl~~~~~~~pg 227 (330)
+.+.++.++.....++. ....+++..+..++.+...++ +.|+++++.|.+ +|+||.|.+..+||++|++|+||
T Consensus 82 ~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l~~ 161 (277)
T TIGR02650 82 GNAAEEETSEFIKAANEDLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGDDK 161 (277)
T ss_pred hhHHHHHHHHHHHHhhhhhccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeecchHhHcCCCH
Confidence 98888854443332211 123445555666666665433 899999999986 89999999999999999999999
Q ss_pred HHHHHHHHcC-ceeeceeecCeEEEecCCCCccccCchhhhhcCCCEEEEEEecCCCcccHHHHHhcCCCCchhHHHHHH
Q 020181 228 KQIEKLKKSG-VEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAV 306 (330)
Q Consensus 228 ~~~~~L~~~G-~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~lI~E~t~~~~~~~~~~a~~~~H~t~~~~~~~~l 306 (330)
++|++|+++| +++++...+++++|+|||.++. ..++.+||+|||||||.++. .. +.++|++..|++..+.
T Consensus 162 ~eI~~l~~~gg~~~t~e~~~~~vvysGDT~~~~-----~~~a~~adlLIhEaTf~d~~--~~--~~~gH~t~~eaa~~A~ 232 (277)
T TIGR02650 162 KEARLLKEEGGDDFTREEHHKILLIIGDDLAAD-----DEEEEGGEELIHECCFFDDA--DD--RRKKHAAADDEMEESK 232 (277)
T ss_pred HHHHHHHHhCCccccccccCcEEEEeCCCCCCC-----hHHhcCCCEEEEeccccccc--cc--ccCCCCCHHHHHHHHH
Confidence 9999999987 8899888889999999999863 24788999999999999887 22 3589999998777663
Q ss_pred HhcccccCCceEEEeccccCcCC
Q 020181 307 LKLQSKVSAKVVPLTEGFKSVYT 329 (330)
Q Consensus 307 ~~~~~~~~~~~~i~ltHfs~ry~ 329 (330)
+.+.. .++|+|||+||.
T Consensus 233 -~a~vk-----~LiLtH~Ssry~ 249 (277)
T TIGR02650 233 -KAAGK-----KKIILHHISRRI 249 (277)
T ss_pred -HcCCC-----EEEEEeeccccc
Confidence 33332 679999999995
No 3
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=100.00 E-value=5e-36 Score=278.51 Aligned_cols=225 Identities=28% Similarity=0.404 Sum_probs=174.0
Q ss_pred CceEEEEe--CCcEEEEecCCCCcccc--------cccEEEecCCChhhhCCHHHHHHHhCcCC-CCCCEEEcCcchHHH
Q 020181 90 GHETCVII--PELKCAFDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKED 158 (330)
Q Consensus 90 ~~~t~~li--~~~~iLiD~G~~~~~~l--------~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~-~~~l~Iy~~~~~~~~ 158 (330)
++++|++| ++..+|||||+++++++ ++++|||||.|+||+.|++.++..+.+.+ ..++.||+|+.+.+.
T Consensus 16 r~~~~~~v~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~~ 95 (299)
T TIGR02651 16 RNLPSIALKLNGELWLFDCGEGTQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEF 95 (299)
T ss_pred CCCceEEEEECCeEEEEECCHHHHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHHH
Confidence 56778888 56789999999987653 68999999999999999999987654433 457889999999988
Q ss_pred HHHHHHHhhhcCCcccceEEEEcCCCC-EEEeCCcEEEEEEEcCCCCCceEEEEEeccc--cchh---hhcCCC-hHHHH
Q 020181 159 VEKLFEIHRSLGNVELNLDLVALDVGE-TYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK--KLKK---QYIHLK-GKQIE 231 (330)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~~i~~g~-~~~i~~~~~v~~~~~~H~~~s~gy~i~~~~~--kl~~---~~~~~p-g~~~~ 231 (330)
++..+..... ...+.++++++.+++ .+..+ +++|+++++.|..+++||+|+.++. +++. +++|+| |++++
T Consensus 96 l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~H~~~~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~ 172 (299)
T TIGR02651 96 IETSLRVSYT--YLNYPIKIHEIEEGGLVFEDD-GFKVEAFPLDHSIPSLGYRFEEKDRPGKFDREKAKELGIPPGPLYG 172 (299)
T ss_pred HHHHHHHccc--CCCceEEEEEccCCCceEecC-CEEEEEEEcCCCCceEEEEEEECCCCCCcCHHHHHHCCCCcchhHH
Confidence 8775543221 112356778888887 58876 9999999999999999999998653 4544 478996 99999
Q ss_pred HHHHcCceee--c------------eeecCeEEEecCCCCccccCchhhhhcCCCEEEEEEecCCCcccHHHHHhcCCCC
Q 020181 232 KLKKSGVEIT--D------------IILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTH 297 (330)
Q Consensus 232 ~L~~~G~~i~--~------------~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~lI~E~t~~~~~~~~~~a~~~~H~t 297 (330)
+|++ |..|+ | ...+++++|+|||.+.+ +....++++|+||+||||.+++ .+.|..++|++
T Consensus 173 ~L~~-g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~---~~~~~~~~~dlLi~E~~~~~~~--~~~~~~~~H~t 246 (299)
T TIGR02651 173 KLKR-GETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCE---EVIEFAKNADLLIHEATFLDED--KKLAKEYGHST 246 (299)
T ss_pred HhhC-CCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCChH---HHHHHHcCCCEEEEECCCCchh--HHHHhhcCCCC
Confidence 9998 43322 1 22356899999999842 3345778999999999999876 55677899999
Q ss_pred chhHHHHHHHhcccccCCceEEEeccccCcCC
Q 020181 298 LSEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 329 (330)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~i~ltHfs~ry~ 329 (330)
++|++..+ ++.+.. .++++|||+||.
T Consensus 247 ~~~a~~~~-~~~~~k-----~lvltH~s~~~~ 272 (299)
T TIGR02651 247 AAQAAEIA-KEANVK-----RLILTHISPRYS 272 (299)
T ss_pred HHHHHHHH-HHcCCC-----EEEEEecccccC
Confidence 99876665 344433 689999999995
No 4
>PRK02113 putative hydrolase; Provisional
Probab=100.00 E-value=8e-37 Score=277.22 Aligned_cols=216 Identities=15% Similarity=0.175 Sum_probs=165.7
Q ss_pred cccccccchhhhhhhhhhHHHHHHHHhhhccccceeccCeEEEEEEecCceEEEEe--CCcEEEEecCCCCcccc-----
Q 020181 42 LNALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVII--PELKCAFDIGRCPTRAI----- 114 (330)
Q Consensus 42 ~~~~lGtG~~~giP~~~c~c~~c~~ar~~~~r~s~~~~~~~i~g~~~g~~~t~~li--~~~~iLiD~G~~~~~~l----- 114 (330)
..++||||+++|+|+++|.|++|.+||.+.. |+++|++| ++..+|||||+++..++
T Consensus 2 ~~~~lGtg~~~g~P~~~c~c~~C~~~~~~~~-----------------R~~~s~li~~~~~~iLiD~G~g~~~~l~~~~~ 64 (252)
T PRK02113 2 KIRILGSGTSTGVPEIGCTCPVCTSKDPRDN-----------------RLRTSALVETEGARILIDCGPDFREQMLRLPF 64 (252)
T ss_pred EEEEEEeCCCCCeecCCCCCccCCCCCCCCc-----------------ceeeEEEEEECCeEEEEECCchHHHHHHhcCc
Confidence 4678999999999999999999999864322 55678888 56789999999976653
Q ss_pred -cccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHHHHHHhhhcCCc--ccceEEEEcCCCCEEEeCC
Q 020181 115 -QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV--ELNLDLVALDVGETYEMRN 191 (330)
Q Consensus 115 -~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~i~~g~~~~i~~ 191 (330)
++|+|||||.|+||++|++.+.... +.++++||+++.+.+.+...+......... -..++++.+++|++++++
T Consensus 65 ~~id~I~lTH~H~DH~~gl~~l~~~~---~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 140 (252)
T PRK02113 65 GKIDAVLITHEHYDHVGGLDDLRPFC---RFGEVPIYAEQYVAERLRSRMPYCFVEHSYPGVPNIPLREIEPDRPFLVN- 140 (252)
T ss_pred cccCEEEECCCChhhhCCHHHHHHhc---cCCCceEEECHHHHHHHHhhCCeeeccCCCCCCcceeeEEcCCCCCEEEC-
Confidence 6999999999999999999885421 246788999999888876553221110000 013677888999999997
Q ss_pred cEEEEEEEcCCC-CCceEEEEEeccccchhhhcCCChHHHHHHHHcCceeeceeecCeEEEecCCCCccccCchhhhhcC
Q 020181 192 DIVVRPFKTHHV-IPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALR 270 (330)
Q Consensus 192 ~~~v~~~~~~H~-~~s~gy~i~~~~~kl~~~~~~~pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~ 270 (330)
+++|+++++.|. .+++||++. +++|+|||.+.. +...+.+++
T Consensus 141 ~~~i~~~~~~H~~~~~~gy~i~-----------------------------------~i~y~~Dt~~~~--~~~~~~~~~ 183 (252)
T PRK02113 141 HTEVTPLRVMHGKLPILGYRIG-----------------------------------KMAYITDMLTMP--EEEYEQLQG 183 (252)
T ss_pred CeEEEEEEecCCCccEEEEEeC-----------------------------------CEEEccCCCCCC--HHHHHHhcC
Confidence 999999999996 689999992 689999998521 223456789
Q ss_pred CCEEEEEEecCCCcccHHHHHhcCCCCchhHHHHHHHhcccccCCceEEEeccccCcCC
Q 020181 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 329 (330)
Q Consensus 271 ~d~lI~E~t~~~~~~~~~~a~~~~H~t~~~~~~~~l~~~~~~~~~~~~i~ltHfs~ry~ 329 (330)
+|+||+||++.. ..++|+++++++..+ ++++.. .++++|||++|.
T Consensus 184 ~DlLi~e~~~~~--------~~~~H~t~~~a~~~~-~~~~~k-----~l~l~H~s~~~~ 228 (252)
T PRK02113 184 IDVLVMNALRIA--------PHPTHQSLEEALENI-KRIGAK-----ETYLIHMSHHIG 228 (252)
T ss_pred CCEEEEhhhcCC--------CCCCcCCHHHHHHHH-HHhCCC-----EEEEEcccccch
Confidence 999999998632 247899998776665 445443 679999999883
No 5
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=100.00 E-value=4.1e-36 Score=272.33 Aligned_cols=216 Identities=18% Similarity=0.188 Sum_probs=160.9
Q ss_pred cccccccchhhhhhhhhhHHHHHHHHhhhccccceeccCeEEEEEEecCceEEEEe--CCcEEEEecCCCCccc----cc
Q 020181 42 LNALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVII--PELKCAFDIGRCPTRA----IQ 115 (330)
Q Consensus 42 ~~~~lGtG~~~giP~~~c~c~~c~~ar~~~~r~s~~~~~~~i~g~~~g~~~t~~li--~~~~iLiD~G~~~~~~----l~ 115 (330)
..++||||+++|+|+++|+|++|++||+.+.+. ++++|+++ ++..+|||||.+.... -+
T Consensus 2 ~~~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~---------------r~~~s~li~~~~~~iLiD~G~~~~~~~~~~~~ 66 (250)
T PRK11244 2 RLTLLGTGGAQGVPVFGCECAACARARRDPAYR---------------RRPCSALIEFNGARTLIDAGLPDLAERFPPGS 66 (250)
T ss_pred EEEEEeccCCCCccCCCccchhhhhhhcCCCCC---------------cceeEEEEEECCCEEEEECCChHHhhcCCccc
Confidence 467899999999999999999999998854332 56777777 5668999999654322 27
Q ss_pred ccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHHHHHHhhhcCCcccceEE-EEcCCCCEEEeCCcEE
Q 020181 116 QNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL-VALDVGETYEMRNDIV 194 (330)
Q Consensus 116 i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~i~~g~~~~i~~~~~ 194 (330)
|++|||||.|.||++|+..+... ...++.||+|+.+... ...+.. . ...++ +.++++++++++ +++
T Consensus 67 i~~i~iTH~H~DHi~gl~~l~~~----~~~~i~i~~~~~~~~~-~~~~~~----~---~~~~~~~~l~~~~~~~~~-~~~ 133 (250)
T PRK11244 67 LQQILLTHYHMDHVQGLFPLRWG----VGDPIPVYGPPDPEGC-DDLFKH----P---GILDFSHPLEPFEPFDLG-GLQ 133 (250)
T ss_pred CCEEEEccCchhhhccHHHHHhh----cCCceeEEeCCchhhH-HHHhcC----c---cccccccccCCCCCeeEC-CEE
Confidence 99999999999999999877431 2467889999886532 222211 0 01222 346788899997 999
Q ss_pred EEEEEcCCCCCceEEEEEeccccchhhhcCCChHHHHHHHHcCceeeceeecCeEEEecCCCCccccCchhhh--hcCCC
Q 020181 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNAD--ALRAK 272 (330)
Q Consensus 195 v~~~~~~H~~~s~gy~i~~~~~kl~~~~~~~pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~--~~~~d 272 (330)
|+++++.|+.+++||+|+.++ ++++|+|||.... +....+ ..++|
T Consensus 134 I~~~~~~H~~~s~g~~i~~~~-------------------------------~~i~ysgDt~~~~--~~~~~~~~~~~~D 180 (250)
T PRK11244 134 VTPLPLNHSKLTFGYLLETAH-------------------------------SRVAYLTDTVGLP--EDTLKFLRNNQPD 180 (250)
T ss_pred EEEEeeCCCcceeEEEEecCC-------------------------------eEEEEEcCCCCCC--HHHHHHHhcCCCC
Confidence 999999999999999998653 4899999998621 112222 25899
Q ss_pred EEEEEEecCCCcccHHHHHhcCCCCchhHHHHHHHhcccccCCceEEEeccccCcCC
Q 020181 273 ILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 329 (330)
Q Consensus 273 ~lI~E~t~~~~~~~~~~a~~~~H~t~~~~~~~~l~~~~~~~~~~~~i~ltHfs~ry~ 329 (330)
+||+||+|.+... ..++|+++++++..+ ++++.. .++++|+++++.
T Consensus 181 lli~e~~~~~~~~-----~~~~H~~~~~a~~~a-~~~~~k-----~lvltH~~~~~~ 226 (250)
T PRK11244 181 LLVLDCSHPPQED-----APRNHNDLTTALAII-EVLRPP-----RVILTHISHQLD 226 (250)
T ss_pred EEEEeCcCCCCCC-----CCCCCCCHHHHHHHH-HhcCCc-----eEEEEcccCCcc
Confidence 9999999987641 357899998766665 455543 789999998764
No 6
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=100.00 E-value=1.2e-35 Score=275.78 Aligned_cols=232 Identities=14% Similarity=0.146 Sum_probs=161.8
Q ss_pred cccccccchhhhhhhhhhHHHHHHHHhhhccccceeccCeEEEEEEecCceEEEEe-C-Cc-EEEEecCCCCcccc----
Q 020181 42 LNALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVII-P-EL-KCAFDIGRCPTRAI---- 114 (330)
Q Consensus 42 ~~~~lGtG~~~giP~~~c~c~~c~~ar~~~~r~s~~~~~~~i~g~~~g~~~t~~li-~-~~-~iLiD~G~~~~~~l---- 114 (330)
..++||||+++|+|+++|+|++|++||..+.+. ..|.++|++| . +. .+|||||++++.|+
T Consensus 2 ~lt~LGtg~~~g~P~~~C~C~~C~~ar~~~~~~-------------~~R~~ss~li~~~g~~~iLiD~G~g~~~ql~~~~ 68 (302)
T PRK05184 2 RIIVLGSAAGGGFPQWNCNCPNCRGARAGTIRA-------------KPRTQSSIAVSADGEDWVLLNASPDIRQQIQATP 68 (302)
T ss_pred EEEEEEecCCCCCCcCCCCchhchhhhcCCCcC-------------CcccccEEEEEcCCCEEEEEECChhHHHHHHhch
Confidence 467899999999999999999999999853211 1256778888 2 33 59999999987543
Q ss_pred -----------cccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHHHHHHhhhcCCcccceEEEEcCC
Q 020181 115 -----------QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDV 183 (330)
Q Consensus 115 -----------~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 183 (330)
+||+|||||.|+||+.||+.|. ...++.||+++.+.+.+++.+..+.... ....++++++.+
T Consensus 69 ~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~------~~~~l~Vyg~~~~~~~l~~~~~~f~~~~-~~~~~~~~~i~~ 141 (302)
T PRK05184 69 ALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLR------EGQPFPVYATPAVLEDLSTGFPIFNVLD-HYGGVQRRPIAL 141 (302)
T ss_pred hcCccccCCcccccEEEEeCCchhhhhChHhhc------cCCCeEEEeCHHHHHHHHhcCCcccccc-cccceeeEEecC
Confidence 4899999999999999999883 2468899999999888865322111111 112457788888
Q ss_pred CCEEEeC--CcEEEEEEEcCCC-------------CCceEEEEE-eccccchhhhcCCChHHHHHHHHcCceeeceeecC
Q 020181 184 GETYEMR--NDIVVRPFKTHHV-------------IPSQGYVIY-LLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSP 247 (330)
Q Consensus 184 g~~~~i~--~~~~v~~~~~~H~-------------~~s~gy~i~-~~~~kl~~~~~~~pg~~~~~L~~~G~~i~~~~~~~ 247 (330)
++.++++ ++++|+++++.|. .+++||+|+ +.+ | +
T Consensus 142 ~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~---------------------g---------~ 191 (302)
T PRK05184 142 DGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRAT---------------------G---------K 191 (302)
T ss_pred CCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCC---------------------C---------c
Confidence 8888884 3799999999763 569999996 221 2 5
Q ss_pred eEEEecCCCCccccCchhhhhcCCCEEEEEEecCCCcccH------HHHHhcCCCCchhHHHHHHHhcccccCCceEEEe
Q 020181 248 EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSI------EHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321 (330)
Q Consensus 248 ~i~y~gDt~~~~~~~~~~~~~~~~d~lI~E~t~~~~~~~~------~~a~~~~H~t~~~~~~~~l~~~~~~~~~~~~i~l 321 (330)
+++|++|+... .++...+++++|+||+||++....... ...+..+|++.++ ...+++.+.+. ..+ ++++
T Consensus 192 ~~~y~tD~~~~--~~~~~~~~~gaDlli~da~~~~~~~~~~~g~~~~~~~~~~H~~~~~-~~~~l~~~~~~-~~k-~l~l 266 (302)
T PRK05184 192 RLFYAPGLAEV--TDALRARLAGADCVLFDGTLWTDDEMIRAGVGTKTGRRMGHLPQSG-PGGMIAALARL-PIA-RKIL 266 (302)
T ss_pred EEEEECCCCCC--CHHHHHHHhcCCEEEEeCCCCcCHHHHhcccCccccccCCCCCCCC-hHHHHHHhhcC-CCC-cEEE
Confidence 79999887531 133455789999999999965443100 0113568999863 22222222221 111 6799
Q ss_pred ccccCcC
Q 020181 322 EGFKSVY 328 (330)
Q Consensus 322 tHfs~ry 328 (330)
||+|+.+
T Consensus 267 tHl~h~~ 273 (302)
T PRK05184 267 IHINNTN 273 (302)
T ss_pred EEcCCCC
Confidence 9999754
No 7
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=100.00 E-value=8.3e-35 Score=268.33 Aligned_cols=219 Identities=28% Similarity=0.378 Sum_probs=169.4
Q ss_pred CceEEEEe--CCcEEEEecCCCCcccc--------cccEEEecCCChhhhCCHHHHHHHhCcCC-CCCCEEEcCcchHHH
Q 020181 90 GHETCVII--PELKCAFDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKED 158 (330)
Q Consensus 90 ~~~t~~li--~~~~iLiD~G~~~~~~l--------~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~-~~~l~Iy~~~~~~~~ 158 (330)
++.+++++ ++..+|||||++++.++ +|++|||||.|.||+.||+.|+..+.+.+ ..++.||+|+...++
T Consensus 18 r~~~s~ll~~~~~~~L~DcGeGt~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~ 97 (292)
T COG1234 18 RNVSSILLRLEGEKFLFDCGEGTQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEF 97 (292)
T ss_pred cccceeEEEeCCeeEEEECCHhHHHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhh
Confidence 66777777 46789999999998875 68999999999999999999988777765 457899999999988
Q ss_pred HHHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEcCCCCCceEEEEEeccc--cchhh-hcCC-ChHHHHHHH
Q 020181 159 VEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK--KLKKQ-YIHL-KGKQIEKLK 234 (330)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~~H~~~s~gy~i~~~~~--kl~~~-~~~~-pg~~~~~L~ 234 (330)
+...+..... ...+.+..+++.. +.+.|....+.|.+++++|.+.++++ +++++ ..|+ ||+++.+|+
T Consensus 98 ~~~~~~~~~~--~~~~~i~~~e~~~-------~~~~v~~~~~~h~~~~~~y~~~e~~~~~~~~~~~~~~~~~g~~~~~l~ 168 (292)
T COG1234 98 VETSLRLSYS--KLTYEIIGHEIEE-------DAFEVEALELDHGVPALGYRIEEPDRPGRFDAEKLKGLPPGPLITALK 168 (292)
T ss_pred hhhhhhhccc--ccceEEEEEEecc-------CceEEEEEecCCCccccceeeecCCCcCcCCHHHhcCCCCchHHHHHh
Confidence 8765543211 1112333344332 27889999999999999999998754 45544 2288 599999999
Q ss_pred HcCc----eee------ceeecCeEEEecCCCCccccCchhhhhcCCCEEEEEEecCCCcccHHHHHhcCCCCchhHHHH
Q 020181 235 KSGV----EIT------DIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQ 304 (330)
Q Consensus 235 ~~G~----~i~------~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~lI~E~t~~~~~~~~~~a~~~~H~t~~~~~~~ 304 (330)
.... .++ ....+++|+|+|||+++ ++...++++||+|||||||.++. ++.|...+|+|..|+..+
T Consensus 169 ~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~---~~~~~~a~~aDlLiHEat~~~~~--~~~a~~~~HsT~~eAa~i 243 (292)
T COG1234 169 AGHPVEERVITPADRIGEPRKGKSVVYSGDTRPC---DELIDLAKGADLLIHEATFEDDL--EDLANEGGHSTAEEAAEI 243 (292)
T ss_pred CCCceeeeecCHHHhccccCCCcEEEEECCCCCC---HHHHHHhcCCCEEEEeccCCchh--hhHHhhcCCCCHHHHHHH
Confidence 8553 222 33455799999999995 34556789999999999999887 555777889999999998
Q ss_pred HH-HhcccccCCceEEEeccccCcCC
Q 020181 305 AV-LKLQSKVSAKVVPLTEGFKSVYT 329 (330)
Q Consensus 305 ~l-~~~~~~~~~~~~i~ltHfs~ry~ 329 (330)
|. ++++ .++|||||+||.
T Consensus 244 A~~A~vk-------~LiLtH~s~ry~ 262 (292)
T COG1234 244 AKEAGVK-------KLILTHFSPRYP 262 (292)
T ss_pred HHHcCCC-------eEEEEeeccccc
Confidence 84 4555 569999999994
No 8
>PRK02126 ribonuclease Z; Provisional
Probab=100.00 E-value=6.5e-34 Score=266.71 Aligned_cols=227 Identities=22% Similarity=0.276 Sum_probs=163.7
Q ss_pred ceEEEEe--C--CcEEEEecCCCCccc------ccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHH
Q 020181 91 HETCVII--P--ELKCAFDIGRCPTRA------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVE 160 (330)
Q Consensus 91 ~~t~~li--~--~~~iLiD~G~~~~~~------l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~ 160 (330)
..+|+++ + +..+|||||+ .++ .+|++||+||.|+||++|++.|+... +.+..++.||||+.+.+.++
T Consensus 15 ~dn~~~l~~~~~~~~iLiD~G~--~~~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~-~~r~~~l~iygp~~~~~~l~ 91 (334)
T PRK02126 15 DDPGLYVDFLFERRALLFDLGD--LHHLPPRELLRISHIFVSHTHMDHFIGFDRLLRHC-LGRPRRLRLFGPPGFADQVE 91 (334)
T ss_pred CCcEEEEEECCCCeEEEEcCCC--HHHHhhcCCCccCEEEEcCCChhHhCcHHHHHHHh-ccCCCCeEEEECHHHHHHHH
Confidence 3445555 2 5689999998 333 27999999999999999999998643 22356889999999999998
Q ss_pred HHHHHhhh-c-CCcc--cceEEEEc--------------------------CCCCEEEeCCcEEEEEEEcCCCCCceEEE
Q 020181 161 KLFEIHRS-L-GNVE--LNLDLVAL--------------------------DVGETYEMRNDIVVRPFKTHHVIPSQGYV 210 (330)
Q Consensus 161 ~~~~~~~~-~-~~~~--~~~~~~~i--------------------------~~g~~~~i~~~~~v~~~~~~H~~~s~gy~ 210 (330)
..+..+.+ . ...+ +.+....+ .++..++.+ +++|+++++.|+++|+||+
T Consensus 92 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~a~~~~H~vp~~gy~ 170 (334)
T PRK02126 92 HKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEP-WFRVRAAFLDHGIPCLAFA 170 (334)
T ss_pred HHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCC-CEEEEEEEccCCCceeEEE
Confidence 87752211 0 0001 11222221 134446655 9999999999999999999
Q ss_pred EEeccc-cchhh---hcCC-ChHHHHHHHHc-------C--ceeec----------------------eeecCeEEEecC
Q 020181 211 IYLLRK-KLKKQ---YIHL-KGKQIEKLKKS-------G--VEITD----------------------IILSPEVAFTGD 254 (330)
Q Consensus 211 i~~~~~-kl~~~---~~~~-pg~~~~~L~~~-------G--~~i~~----------------------~~~~~~i~y~gD 254 (330)
|+++++ +|+.+ ++|+ ||+|+++||+. | +.+.+ ...+++++|+||
T Consensus 171 ~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~v~y~gD 250 (334)
T PRK02126 171 LEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPGQKIGYVTD 250 (334)
T ss_pred EEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHhccCCCCCEEEEECC
Confidence 998765 56555 7899 79999999982 1 22321 124678999999
Q ss_pred CCCcc-ccCchhhhhcCCCEEEEEEecCCCcccHHHHHhcCCCCchhHHHHHHHhcccccCCceEEEeccccCcCC
Q 020181 255 TTSEF-MLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 329 (330)
Q Consensus 255 t~~~~-~~~~~~~~~~~~d~lI~E~t~~~~~~~~~~a~~~~H~t~~~~~~~~l~~~~~~~~~~~~i~ltHfs~ry~ 329 (330)
|.+.. .+.....+++++|+||+||+|.++. ...+..++|+|++++...+ +..+.. .++|+|||+||.
T Consensus 251 T~~~~~~~~~l~~~a~~aDlLI~Eat~~~~~--~~~a~~~gH~t~~~a~~lA-~~a~vk-----~LvLtH~sp~~~ 318 (334)
T PRK02126 251 IGYTEENLARIVELAAGVDLLFIEAVFLDED--AEKARRKNHLTARQAGRLA-REAGVK-----RLLPFHFSPRYQ 318 (334)
T ss_pred CCCCcccHHHHHHHHcCCCEEEEEcccChHH--hhhcccCCCCCHHHHHHHH-HHcCCC-----EEEEEecCcccC
Confidence 99843 2223445678999999999998876 4566789999999876665 344433 689999999995
No 9
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=100.00 E-value=8.5e-35 Score=269.32 Aligned_cols=230 Identities=17% Similarity=0.185 Sum_probs=161.8
Q ss_pred ccccccchhhhhhhhhhHHHHHHHHhhhccccceeccCeEEEEEEecCceEEEEe-C-C-cEEEEecCCCCcccc-----
Q 020181 43 NALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVII-P-E-LKCAFDIGRCPTRAI----- 114 (330)
Q Consensus 43 ~~~lGtG~~~giP~~~c~c~~c~~ar~~~~r~s~~~~~~~i~g~~~g~~~t~~li-~-~-~~iLiD~G~~~~~~l----- 114 (330)
.++||||+++|+|+++|+|++|++||....+. ..|.+++++| + + ..+|||||++++.|+
T Consensus 2 ~~~LGtg~s~G~P~~~C~C~~C~~a~~~~~~~-------------~~R~rss~ll~~~g~~~iLID~Gpd~r~ql~~~~~ 68 (302)
T TIGR02108 2 IVVLGSAAGGGFPQWNCNCPNCRGARAGTIGA-------------KARTQSSIAVSADGERWVLLNASPDIRQQIQATPA 68 (302)
T ss_pred EEEEEecCCCCCCcCCCCChhhHHHhcCCCCC-------------ccccccEEEEEeCCCEEEEEECCHHHHHHHHhCcc
Confidence 46899999999999999999999998732110 0145667777 2 3 479999999987653
Q ss_pred ----------cccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHHHHHHhhhcCCcccceEEEEcCCC
Q 020181 115 ----------QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVG 184 (330)
Q Consensus 115 ----------~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~g 184 (330)
+|++|||||.|.||+.||+.|.+ ..+++||+++.+.+.+.+ +..+..+. ...++++.++.+
T Consensus 69 ~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~------~~~lpVya~~~t~~~L~~-~~~~~~~~--~~~~~~~~i~~~ 139 (302)
T TIGR02108 69 LHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLRE------GQPFTLYATEMVLQDLSD-NPIFNVLD--HWNVRRQPIALN 139 (302)
T ss_pred cccccCCCcccCCEEEEeCCCcchhhCHHHHcC------CCCceEEECHHHHHHHHh-CCCccccc--hhhccceEecCC
Confidence 48999999999999999998842 368899999999988864 21111111 123445667777
Q ss_pred CEEEeC----CcEEEEEEEcC--------C------CCCceEEEEEeccccchhhhcCCChHHHHHHHHcCceeeceeec
Q 020181 185 ETYEMR----NDIVVRPFKTH--------H------VIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILS 246 (330)
Q Consensus 185 ~~~~i~----~~~~v~~~~~~--------H------~~~s~gy~i~~~~~kl~~~~~~~pg~~~~~L~~~G~~i~~~~~~ 246 (330)
+++.++ ++++|++|++. | ..+++||+|+.+.. |
T Consensus 140 ~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~--------------------g--------- 190 (302)
T TIGR02108 140 EKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTT--------------------G--------- 190 (302)
T ss_pred CcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCC--------------------C---------
Confidence 778764 15999999998 5 24799999986410 1
Q ss_pred CeEEEecCCCCccccCchhhhhcCCCEEEEEEec-CCCcccH-----HHHHhcCCCCchhHHHHHHHhcccccCCceEEE
Q 020181 247 PEVAFTGDTTSEFMLNPRNADALRAKILITEATF-LDDEMSI-----EHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPL 320 (330)
Q Consensus 247 ~~i~y~gDt~~~~~~~~~~~~~~~~d~lI~E~t~-~~~~~~~-----~~a~~~~H~t~~~~~~~~l~~~~~~~~~~~~i~ 320 (330)
++++|++|+..- .++....++++|+||+||+| .++++.. .....+||++.. +...+++.+.+. .. ..++
T Consensus 191 ~~~~y~tD~g~~--~~~~~~~l~~~d~liida~~~~d~e~l~~g~ypri~~~~gHls~~-~~~~al~~~~~~-~~-~~~~ 265 (302)
T TIGR02108 191 KRLFYIPGCAEI--TDDLKARMAGADLVFFDGTLWRDDEMIRAGVGTKTGRRMGHVSMS-GEGGSLAVLADL-EI-ARKV 265 (302)
T ss_pred cEEEEECCCCCC--CHHHHHHHhCCCEEEEeCCCCCcHHHHhcCCCCCcCCCCCCCCcc-chHHHHHHhhcC-CC-CcEE
Confidence 589999999841 13345577899999999995 4433100 112467899997 444444444443 12 2678
Q ss_pred eccccCcC
Q 020181 321 TEGFKSVY 328 (330)
Q Consensus 321 ltHfs~ry 328 (330)
++|+||..
T Consensus 266 l~Hl~h~~ 273 (302)
T TIGR02108 266 LIHINNTN 273 (302)
T ss_pred EEecCCCC
Confidence 99999965
No 10
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=100.00 E-value=5.7e-32 Score=243.42 Aligned_cols=206 Identities=18% Similarity=0.201 Sum_probs=149.1
Q ss_pred hhhhhhhhhHHHHHHHHhhhccccceeccCeEEEEEEecCceEEEEe--CCcEEEEecCCCCccc----ccccEEEecCC
Q 020181 51 LSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVII--PELKCAFDIGRCPTRA----IQQNFVFITHG 124 (330)
Q Consensus 51 ~~giP~~~c~c~~c~~ar~~~~r~s~~~~~~~i~g~~~g~~~t~~li--~~~~iLiD~G~~~~~~----l~i~~IfiTH~ 124 (330)
++|+|+++|+|++|++||..+... ++.+|+++ ++..+|||||...... -+|++|||||.
T Consensus 1 ~~~~p~~~c~c~~c~~a~~~~~~~---------------r~~~s~~i~~~~~~iliD~G~~~~~~~~~~~~id~i~iTH~ 65 (238)
T TIGR03307 1 AQQVPVYGCDCVACQRARRNPDYR---------------RQPCSAVIEFNGARTLIDAGLTDLAERFPPGSLQAILLTHY 65 (238)
T ss_pred CCCCCcCCccchhhHhhhhCcccc---------------CcceEEEEEECCcEEEEECCChhHhhccCccCCCEEEEecC
Confidence 479999999999999998853321 55667777 5678999999654322 27999999999
Q ss_pred ChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHHHHHHhhhcCCcccceEE-EEcCCCCEEEeCCcEEEEEEEcCCC
Q 020181 125 HLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL-VALDVGETYEMRNDIVVRPFKTHHV 203 (330)
Q Consensus 125 H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~i~~g~~~~i~~~~~v~~~~~~H~ 203 (330)
|.||+.|+..+... ..+++.||+|+.+... ...+.. . ...++ ..+..+++++++ +++|+++++.|.
T Consensus 66 H~DHi~gl~~l~~~----~~~~~~v~~~~~~~~~-~~~~~~----~---~~~~~~~~~~~~~~~~~~-~~~i~~~~~~H~ 132 (238)
T TIGR03307 66 HMDHVQGLFPLRWG----VGEPIPVYGPPDEEGC-DDLFKH----P---GILDFSKPLEAFEPFDLG-GLRVTPLPLVHS 132 (238)
T ss_pred chhhhcchHHHHHh----cCCceeEEeCchHhhH-HHHhcC----c---ccccccccccCCceEEEC-CEEEEEEecCCC
Confidence 99999999877431 2356889999987532 222211 0 01122 236778899997 999999999999
Q ss_pred CCceEEEEEeccccchhhhcCCChHHHHHHHHcCceeeceeecCeEEEecCCCCccccCchhhhh--cCCCEEEEEEecC
Q 020181 204 IPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADA--LRAKILITEATFL 281 (330)
Q Consensus 204 ~~s~gy~i~~~~~kl~~~~~~~pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~--~~~d~lI~E~t~~ 281 (330)
.+++||+|+.++ ++++|+|||.... +.....+ .++|+||+||++.
T Consensus 133 ~~~~g~~i~~~~-------------------------------~~i~y~gDt~~~~--~~~~~~~~~~~~D~li~e~~~~ 179 (238)
T TIGR03307 133 KLTFGYLLETDG-------------------------------QRVAYLTDTAGLP--PDTEAFLKNHPLDVLILDCSHP 179 (238)
T ss_pred CcceEEEEecCC-------------------------------cEEEEEecCCCCC--HHHHHHHhcCCCCEEEEeCCcC
Confidence 899999998543 4899999997521 1122233 3799999999997
Q ss_pred CCcccHHHHHhcCCCCchhHHHHHHHhcccccCCceEEEeccccCcC
Q 020181 282 DDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLTEGFKSVY 328 (330)
Q Consensus 282 ~~~~~~~~a~~~~H~t~~~~~~~~l~~~~~~~~~~~~i~ltHfs~ry 328 (330)
.... ..++|+++++++..+ ++++.. .++++||+++.
T Consensus 180 ~~~~-----~~~~H~~~~~~~~~~-~~~~~~-----~lil~H~~~~~ 215 (238)
T TIGR03307 180 PQSD-----APRNHNDLTRALAIN-EQLRPK-----QVILTHISHQL 215 (238)
T ss_pred cccc-----CCCCcCCHHHHHHHH-HHcCCC-----EEEEEeccccc
Confidence 6541 347899998666555 555544 78999999875
No 11
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=99.95 E-value=6.3e-28 Score=236.05 Aligned_cols=208 Identities=22% Similarity=0.227 Sum_probs=152.3
Q ss_pred CeEEEEEEec-------CceEEEEeC---CcEEEEecCCCCcccc--------------cccEEEecCCChhhhCCHHHH
Q 020181 80 GYTIEGVSIG-------GHETCVIIP---ELKCAFDIGRCPTRAI--------------QQNFVFITHGHLDHIGGLPMY 135 (330)
Q Consensus 80 ~~~i~g~~~g-------~~~t~~li~---~~~iLiD~G~~~~~~l--------------~i~~IfiTH~H~DHi~Gl~~l 135 (330)
.+.|...+.| ||-++++++ +..||+|||+|+..|+ ++.+|||||.|+||..|+..+
T Consensus 442 ~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~v 521 (746)
T KOG2121|consen 442 DPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISV 521 (746)
T ss_pred CcEEEEecCCccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHH
Confidence 4555555444 688888883 3469999999997664 689999999999999999999
Q ss_pred HHHhCc--C--CCCCCEEEcCcchHHHHHHHHHHhhhcCCcccceE--EEEcC-----------CCCEE-EeCCcEEEEE
Q 020181 136 VASRGL--Y--NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD--LVALD-----------VGETY-EMRNDIVVRP 197 (330)
Q Consensus 136 ~~~~~~--~--~~~~l~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~i~-----------~g~~~-~i~~~~~v~~ 197 (330)
+..|.- . +..++.|.+|....++++.+.............+. ...+. ....+ +++ ...|..
T Consensus 522 L~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~s~~~~~~~~~l~~~~-l~~i~t 600 (746)
T KOG2121|consen 522 LQARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPDSVPERLLSYLLRELG-LESIQT 600 (746)
T ss_pred HHHHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhhhhccCccccchhhhhHHHHhcC-ceeEEe
Confidence 876532 2 34688899999999988875521100000000000 00000 01112 233 788999
Q ss_pred EEcCCCCCceEEEEEeccccchhhhcCCChHHHHHHHHcCceeeceeecCeEEEecCCCCccccCchhhhhcCCCEEEEE
Q 020181 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITE 277 (330)
Q Consensus 198 ~~~~H~~~s~gy~i~~~~~kl~~~~~~~pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~lI~E 277 (330)
+++.|++.++|..+.... | ++++|+|||+|+.. .....+++|+||||
T Consensus 601 c~viHCp~syg~~i~~~~---------------------~---------~Ki~YSGDTrP~~~---~v~~g~datlLIHE 647 (746)
T KOG2121|consen 601 CPVIHCPQSYGCSITHGS---------------------G---------WKIVYSGDTRPCED---LVKAGKDATLLIHE 647 (746)
T ss_pred cCcEecChhhceeEeccc---------------------c---------eEEEEcCCCCCchh---HhhhccCCceEEee
Confidence 999999999999997542 3 59999999999643 34467899999999
Q ss_pred EecCCCcccHHHHHhcCCCCchhHHHHHHHhcccccCCceEEEeccccCcCC
Q 020181 278 ATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 329 (330)
Q Consensus 278 ~t~~~~~~~~~~a~~~~H~t~~~~~~~~l~~~~~~~~~~~~i~ltHfs~ry~ 329 (330)
|||.++. .+.|..++|+|..||+..+ +.++.+ .++||||||||+
T Consensus 648 AT~ED~l--~EeAv~k~HST~sEAi~V~-~~m~ar-----~liLTHFSQRY~ 691 (746)
T KOG2121|consen 648 ATLEDDL--EEEAVEKGHSTTSEAISVA-KKMNAK-----RLILTHFSQRYP 691 (746)
T ss_pred hhhchhH--HHHHHHhCCCCHHHHHHHH-Hhccch-----hhhhhhhhcccC
Confidence 9999998 8899999999999988887 556665 789999999997
No 12
>PRK00055 ribonuclease Z; Reviewed
Probab=99.94 E-value=9.3e-27 Score=212.74 Aligned_cols=196 Identities=30% Similarity=0.356 Sum_probs=131.0
Q ss_pred CceEEEEe--CCcEEEEecCCCCcccc--------cccEEEecCCChhhhCCHHHHHHHhCcCC-CCCCEEEcCcchHHH
Q 020181 90 GHETCVII--PELKCAFDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKED 158 (330)
Q Consensus 90 ~~~t~~li--~~~~iLiD~G~~~~~~l--------~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~-~~~l~Iy~~~~~~~~ 158 (330)
++++|++| ++..+|||||+++.+++ ++++|||||.|+||++||+.++..+...+ .+++.||+|+.+.+.
T Consensus 18 r~~~~~li~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~ 97 (270)
T PRK00055 18 RNVSSILLRLGGELFLFDCGEGTQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEF 97 (270)
T ss_pred CCCCEEEEEECCcEEEEECCHHHHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHH
Confidence 34667877 56789999999986543 69999999999999999999876554432 568889999999888
Q ss_pred HHHHHHHhhhcC------CcccceEE-----EEcCCCCEE-EeCCcEEEEEEEcCCCC--CceEEEEEeccccchhhhcC
Q 020181 159 VEKLFEIHRSLG------NVELNLDL-----VALDVGETY-EMRNDIVVRPFKTHHVI--PSQGYVIYLLRKKLKKQYIH 224 (330)
Q Consensus 159 l~~~~~~~~~~~------~~~~~~~~-----~~i~~g~~~-~i~~~~~v~~~~~~H~~--~s~gy~i~~~~~kl~~~~~~ 224 (330)
++..+....++. .....+.. ..+.++..+ ++..+.++. ..+|.. ++++|+++.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~i~~~~~~~~~~~g--------- 166 (270)
T PRK00055 98 VETLLRASGSLGYRIAEKDKPGKLDAEKLKALGVPPGPLFGKLKRGEDVT--LEDGRIINPADVLGPPRKG--------- 166 (270)
T ss_pred HHHHHHHhhceeEEEEEcCCCCCCCHHHHHHCCCCCCchHHHhhCCCeEE--eCCCcEEeHHHeeccCCCC---------
Confidence 876554322110 00000000 001111111 011122222 123432 68899987542
Q ss_pred CChHHHHHHHHcCceeeceeecCeEEEecCCCCccccCchhhhhcCCCEEEEEEecCCCcccHHHHHhcCCCCchhHHHH
Q 020181 225 LKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQ 304 (330)
Q Consensus 225 ~pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~lI~E~t~~~~~~~~~~a~~~~H~t~~~~~~~ 304 (330)
++++|+|||.+.. .....++++|+||+||+|.++. .+.+..++|+++++++..
T Consensus 167 ----------------------~~~~y~~Dt~~~~---~~~~~~~~~d~li~E~~~~~~~--~~~~~~~~H~~~~~a~~~ 219 (270)
T PRK00055 167 ----------------------RKVAYCGDTRPCE---ALVELAKGADLLVHEATFGDED--EELAKEYGHSTARQAAEI 219 (270)
T ss_pred ----------------------cEEEEeCCCCCcH---HHHHHhCCCCEEEEeccCCcch--hhHHhhcCCCCHHHHHHH
Confidence 5899999999842 3344678999999999998876 455667899999876665
Q ss_pred HHHhcccccCCceEEEeccccCcCC
Q 020181 305 AVLKLQSKVSAKVVPLTEGFKSVYT 329 (330)
Q Consensus 305 ~l~~~~~~~~~~~~i~ltHfs~ry~ 329 (330)
+ ++++.. .++++|||++|.
T Consensus 220 ~-~~~~~~-----~~vl~H~~~~~~ 238 (270)
T PRK00055 220 A-KEAGVK-----RLILTHFSPRYT 238 (270)
T ss_pred H-HHcCCC-----EEEEEeeccccC
Confidence 5 555544 789999999985
No 13
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.90 E-value=1.3e-22 Score=175.99 Aligned_cols=174 Identities=31% Similarity=0.491 Sum_probs=130.2
Q ss_pred EEEEecCCCCc--c---c--------ccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHHH-HHHh
Q 020181 101 KCAFDIGRCPT--R---A--------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKL-FEIH 166 (330)
Q Consensus 101 ~iLiD~G~~~~--~---~--------l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~~-~~~~ 166 (330)
++|||||.+.. + + .++|+|||||.|.||+.|++.+......... +||+++.+.+.+... ....
T Consensus 2 ~iLiD~g~~~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~---~i~~~~~~~~~l~~~~~~~~ 78 (194)
T PF12706_consen 2 RILIDCGPGTRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK---PIYGPPETKEFLREYKFGIL 78 (194)
T ss_dssp EEEESE-TTHHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT---EEEECHHHHHHHHHHHHTHH
T ss_pred EEEEeCCCCcccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccc---eEEecHHHHHHHHhhhcccc
Confidence 79999999743 1 1 1789999999999999999998775433212 799999999988742 2111
Q ss_pred hhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEcCCCCCceE----EEEEeccccchhhhcCCChHHHHHHHHcCceeec
Q 020181 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQG----YVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITD 242 (330)
Q Consensus 167 ~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~~H~~~s~g----y~i~~~~~kl~~~~~~~pg~~~~~L~~~G~~i~~ 242 (330)
... ......+++.+.+++.++++ +++|+++++.|..+..+ |+|+.++
T Consensus 79 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~H~~~~~~~~~g~~i~~~~--------------------------- 129 (194)
T PF12706_consen 79 DLY-PEEDNFDIIEISPGDEFEIG-DFRITPFPANHGPPSYGGNKGFVIEPDG--------------------------- 129 (194)
T ss_dssp TTC-CTTSGEEEEEECTTEEEEET-TEEEEEEEEESSSCCEEECCEEEEEETT---------------------------
T ss_pred ccc-ccccceeEEEeccCceEEec-eEEEEEEeccccccccccCceEEEecCC---------------------------
Confidence 111 11235678888899999998 99999999999988877 9998643
Q ss_pred eeecCeEEEecCCCCccccCchhhhhcCCCEEEEEEecCCCcccHH-HHHhcCCCCchhHHHHHHHhcccccCCceEEEe
Q 020181 243 IILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIE-HAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLT 321 (330)
Q Consensus 243 ~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~lI~E~t~~~~~~~~~-~a~~~~H~t~~~~~~~~l~~~~~~~~~~~~i~l 321 (330)
++++|+||+.++ .+.++++|++|+||++..++ .+ .+....|+++++++..+ ++++.. .+++
T Consensus 130 ----~~i~~~gD~~~~------~~~~~~~D~li~~~~~~~~~--~~~~~~~~~h~~~~~~~~~~-~~~~~~-----~~il 191 (194)
T PF12706_consen 130 ----KKIFYSGDTNYD------FEELKNIDLLILECGYIDEE--EEPPARGPGHMTLEEALELA-KELKAK-----KVIL 191 (194)
T ss_dssp ----EEEEEETSSSSC------HHHHTTBSEEEEEBCBSSGG--HHCHHCCTTSBBHHHHHHHH-HHHTTS-----EEEE
T ss_pred ----cceEEeeccchh------hhhhccCCEEEEeCCCcchh--hcccccCCCCCCHHHHHHHH-HHcCCC-----EEEE
Confidence 589999999982 23458899999999999877 33 45669999998655554 566665 7899
Q ss_pred ccc
Q 020181 322 EGF 324 (330)
Q Consensus 322 tHf 324 (330)
+||
T Consensus 192 ~H~ 194 (194)
T PF12706_consen 192 IHF 194 (194)
T ss_dssp ESB
T ss_pred ECC
Confidence 997
No 14
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.86 E-value=2.9e-20 Score=180.76 Aligned_cols=156 Identities=22% Similarity=0.292 Sum_probs=111.9
Q ss_pred cCceEEEEeCCcEEEEecCCCCcc-------------------cccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEE
Q 020181 89 GGHETCVIIPELKCAFDIGRCPTR-------------------AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTI 149 (330)
Q Consensus 89 g~~~t~~li~~~~iLiD~G~~~~~-------------------~l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~I 149 (330)
|+|+..+..++..+|||||.+... ..++++|||||+|.||++|++.++..+ ..++|
T Consensus 13 G~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~-----~~~~V 87 (422)
T TIGR00649 13 GKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTV-----GFPPI 87 (422)
T ss_pred CCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhC-----CCCeE
Confidence 445444444677899999976421 127899999999999999999997632 23469
Q ss_pred EcCcchHHHHHHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEcCCC-CCceEEEEEeccccchhhhcCCChH
Q 020181 150 FVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHV-IPSQGYVIYLLRKKLKKQYIHLKGK 228 (330)
Q Consensus 150 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~~H~-~~s~gy~i~~~~~kl~~~~~~~pg~ 228 (330)
|+++.+...++..+... .+. ....++.++++++++++++++|+++++.|+ ++++||+++.++
T Consensus 88 y~~~~t~~~l~~~~~~~-~~~---~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~------------- 150 (422)
T TIGR00649 88 YGTPLTIALIKSKIKEN-KLN---VRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTPL------------- 150 (422)
T ss_pred EeCHHHHHHHHHHHHhc-CCC---CCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeCC-------------
Confidence 99999998887655421 111 123467788899999964699999999996 579999998653
Q ss_pred HHHHHHHcCceeeceeecCeEEEecCCCCccccC--------chhhhh-cCCCEEEEEEecCCCc
Q 020181 229 QIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLN--------PRNADA-LRAKILITEATFLDDE 284 (330)
Q Consensus 229 ~~~~L~~~G~~i~~~~~~~~i~y~gDt~~~~~~~--------~~~~~~-~~~d~lI~E~t~~~~~ 284 (330)
.+++|+||+....... ...... +++|+||+|+||....
T Consensus 151 ------------------~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~ 197 (422)
T TIGR00649 151 ------------------GYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENP 197 (422)
T ss_pred ------------------cEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCC
Confidence 3799999997632110 011112 5689999999998643
No 15
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.81 E-value=5e-20 Score=168.73 Aligned_cols=221 Identities=18% Similarity=0.088 Sum_probs=134.8
Q ss_pred CcccccccchhhhhhhhhhHHHHHHHHhhhccccceeccCeEEEEEEecCceEEEEeCCcEEEEecCCCCcccc------
Q 020181 41 PLNALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAI------ 114 (330)
Q Consensus 41 ~~~~~lGtG~~~giP~~~c~c~~c~~ar~~~~r~s~~~~~~~i~g~~~g~~~t~~li~~~~iLiD~G~~~~~~l------ 114 (330)
+..++||||+++|+|.++|+|..|. ..+.|. ...+..+.++||+|++.+.+.
T Consensus 4 ~~f~~lgsG~~gg~p~~~~~~~~c~---~~~~~v-------------------~~~~~~~~~lid~g~~~~~~~~~~~~~ 61 (269)
T COG1235 4 MRFTVLGSGSSGGVPVIGCDCRACG---GNRLRV-------------------DCGVGVKTLLIDAGPDLRDQGLRLGVS 61 (269)
T ss_pred eEEEEEEEcCCCCceecCCCccccC---CceEEE-------------------EEEecceeEEEecChhHHhhhhccccc
Confidence 4567899999999999999999999 222221 122233489999999987653
Q ss_pred cccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHH-----HHHHHHhhhcCCcccceEEEEcCCCCEEEe
Q 020181 115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDV-----EKLFEIHRSLGNVELNLDLVALDVGETYEM 189 (330)
Q Consensus 115 ~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i 189 (330)
++|+||+||.|+||+.|++.|.+..... +|....+.... ...+.+. ...++..++.+.+
T Consensus 62 ~idai~~TH~H~DHi~Gl~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 125 (269)
T COG1235 62 DLDAILLTHEHSDHIQGLDDLRRAYTLP------IYVNPGTLRASTSDRLLGGFPYL----------FRHPFPPFSLPAI 125 (269)
T ss_pred ccCeEEEecccHHhhcChHHHHHHhcCC------cccccceecccchhhhhccchhh----------hcCCCCccccccc
Confidence 5999999999999999999997744321 22222222111 1111111 0112224445556
Q ss_pred CCcEEEEEEEcCCC-CCceEEEEEeccccchhhhcCCChHHHHHHHHcCceee-ce--eecCeEEEecCCCCcc-ccCch
Q 020181 190 RNDIVVRPFKTHHV-IPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEIT-DI--ILSPEVAFTGDTTSEF-MLNPR 264 (330)
Q Consensus 190 ~~~~~v~~~~~~H~-~~s~gy~i~~~~~kl~~~~~~~pg~~~~~L~~~G~~i~-~~--~~~~~i~y~gDt~~~~-~~~~~ 264 (330)
+ ++.++++++.|. +...++.+.....++ .+.... -. .....++|++||...+ ..+..
T Consensus 126 ~-~~~~~~~~~~hd~~~~~~~~~~~~~~~~-----------------~~~~~~g~~~~~~~~~vay~~Dt~~~~~~~d~~ 187 (269)
T COG1235 126 G-GLEVTPFPVPHDAIEPVGFVIIRTGRKL-----------------HGGTDIGYGLEWRIGDVAYLTDTELFPSNHDVE 187 (269)
T ss_pred c-ceeeecCCCCCccccCCCcccccCcccc-----------------cccccceeeeeeeeccEEEccccccCcchhHHH
Confidence 5 788888888884 455555554332211 000000 00 1114789999998521 11222
Q ss_pred hhhhcCCCEEEEEEecCCCcccHHHHHhcCCCCchhHHHHHHHhcccccCCceEEEeccccCcCC
Q 020181 265 NADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 329 (330)
Q Consensus 265 ~~~~~~~d~lI~E~t~~~~~~~~~~a~~~~H~t~~~~~~~~l~~~~~~~~~~~~i~ltHfs~ry~ 329 (330)
+......++++.++++.+.. ...+|++++++... .+.++.. +++|+|+|+.+.
T Consensus 188 l~~~~~~~~~~~~~~~~~~g------h~~~h~~~~~a~~~-~~~~~~~-----rivLtHls~~~~ 240 (269)
T COG1235 188 LLDNGLYPLDIKDRILPDPG------HLSNHLSAEEALEL-IEKLKPK-----RLVLTHLSHKND 240 (269)
T ss_pred HhcCCccceeeeeccccccC------CCCCchhHHHHHHH-HHhCCcc-----eEEEEecCCCCC
Confidence 33445789999999987764 45778887644333 3445443 689999999764
No 16
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.79 E-value=5.2e-18 Score=170.98 Aligned_cols=170 Identities=22% Similarity=0.283 Sum_probs=117.4
Q ss_pred eEEEEEEecCceEEEEe--CCcEEEEecCCCCcc---------------cccccEEEecCCChhhhCCHHHHHHHhCcCC
Q 020181 81 YTIEGVSIGGHETCVII--PELKCAFDIGRCPTR---------------AIQQNFVFITHGHLDHIGGLPMYVASRGLYN 143 (330)
Q Consensus 81 ~~i~g~~~g~~~t~~li--~~~~iLiD~G~~~~~---------------~l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~ 143 (330)
+.++|....-..+|+++ ++..+|||||..... .-+||+|||||+|.||++|++.|... .
T Consensus 177 i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~-g--- 252 (630)
T TIGR03675 177 VTALGGFREVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKY-G--- 252 (630)
T ss_pred EEEEecCCccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHh-C---
Confidence 44555433334578888 567999999965321 01699999999999999999998752 2
Q ss_pred CCCCEEEcCcchHHHHHHHHHHhhhc---CCcc--c--------ceEEEEcCCCCEEEeCCcEEEEEEEcCCCCCceEEE
Q 020181 144 LKPPTIFVPPSIKEDVEKLFEIHRSL---GNVE--L--------NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV 210 (330)
Q Consensus 144 ~~~l~Iy~~~~~~~~l~~~~~~~~~~---~~~~--~--------~~~~~~i~~g~~~~i~~~~~v~~~~~~H~~~s~gy~ 210 (330)
.+. +||++..+.+.+..++.....+ .... + ...+..++.++++++.+++++++++++|..++..+.
T Consensus 253 ~~g-pIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilGsa~~~ 331 (630)
T TIGR03675 253 YDG-PVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILGSAIAH 331 (630)
T ss_pred CCC-ceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccCceEEE
Confidence 222 4999999988766544332211 0000 0 124567888999998668999999999999999888
Q ss_pred EEeccccchhhhcCCChHHHHHHHHcCceeeceeecCeEEEecCCCCcc--ccCchhhhhcCCCEEEEEEecCCCc
Q 020181 211 IYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF--MLNPRNADALRAKILITEATFLDDE 284 (330)
Q Consensus 211 i~~~~~kl~~~~~~~pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~~~--~~~~~~~~~~~~d~lI~E~t~~~~~ 284 (330)
+...+. + .+++|+||+.... .+........++|+||+|+||.+..
T Consensus 332 ~~i~dg--------------------~---------~~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~ESTYg~~~ 378 (630)
T TIGR03675 332 LHIGDG--------------------L---------YNIVYTGDFKYEKTRLLDPAVNKFPRVETLIMESTYGGRD 378 (630)
T ss_pred EEECCC--------------------C---------EEEEEeCCCCCCCCcCccchhhcCCCCCEEEEeCccCCCC
Confidence 765431 1 3899999998732 2222222345799999999999764
No 17
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.76 E-value=2.3e-17 Score=162.42 Aligned_cols=173 Identities=23% Similarity=0.285 Sum_probs=127.3
Q ss_pred ecCceEEEEeCCcEEEEecCCCCccc-------------------ccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCE
Q 020181 88 IGGHETCVIIPELKCAFDIGRCPTRA-------------------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPT 148 (330)
Q Consensus 88 ~g~~~t~~li~~~~iLiD~G~~~~~~-------------------l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~ 148 (330)
.|.|.+.+.++++.++||||.-+... -+|++|||||+|.||++|+|+|+... ..++
T Consensus 20 iGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~-----~~~p 94 (555)
T COG0595 20 IGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQV-----LFAP 94 (555)
T ss_pred hccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcC-----CcCc
Confidence 36677777778889999999543211 17999999999999999999998732 3256
Q ss_pred EEcCcchHHHHHHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEcCCCC-CceEEEEEeccccchhhhcCCCh
Q 020181 149 IFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVI-PSQGYVIYLLRKKLKKQYIHLKG 227 (330)
Q Consensus 149 Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~~H~~-~s~gy~i~~~~~kl~~~~~~~pg 227 (330)
||+++-+..+++..+...... ....+++++++++.++++ ++.|+++++.|++ +++||.+.++.
T Consensus 95 iy~s~lt~~Li~~k~~~~~~~---~~~~~~~ev~~~~~i~~~-~~~v~f~~vtHSIPds~g~~i~Tp~------------ 158 (555)
T COG0595 95 IYASPLTAALIKEKLKEHGLF---KNENELHEVKPGSEIKFG-SFEVEFFPVTHSIPDSLGIVIKTPE------------ 158 (555)
T ss_pred eecCHhhHHHHHHHHHHhccc---cccCceEEeCCCCeEEeC-cEEEEEEeecccCccceEEEEECCC------------
Confidence 999999999998877633211 123578899999999997 9999999999986 59999999874
Q ss_pred HHHHHHHHcCceeeceeecCeEEEecCCCCccccC-----c--hhh-hh-cCCCEEEEEEecCCCcccHHHHHhcCCCCc
Q 020181 228 KQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLN-----P--RNA-DA-LRAKILITEATFLDDEMSIEHAQQHGHTHL 298 (330)
Q Consensus 228 ~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~~~~~~-----~--~~~-~~-~~~d~lI~E~t~~~~~~~~~~a~~~~H~t~ 298 (330)
| .++|+||...+.... + .++ .. .++++||+|+|-...+ +++..
T Consensus 159 ---------G----------~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~p---------g~t~S 210 (555)
T COG0595 159 ---------G----------NIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAENP---------GFTPS 210 (555)
T ss_pred ---------c----------cEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccCCC---------CCCCC
Confidence 4 799999987532111 1 111 12 3699999999977643 56666
Q ss_pred hhHHHHHHHhc
Q 020181 299 SEDIRQAVLKL 309 (330)
Q Consensus 299 ~~~~~~~l~~~ 309 (330)
+..+...+.++
T Consensus 211 E~~v~~~l~~i 221 (555)
T COG0595 211 ESEVGENLEDI 221 (555)
T ss_pred HHHHHHHHHHH
Confidence 55555554333
No 18
>PRK04286 hypothetical protein; Provisional
Probab=99.75 E-value=4.5e-18 Score=157.84 Aligned_cols=203 Identities=12% Similarity=0.085 Sum_probs=113.8
Q ss_pred eEEEEEEe-cCceEEEEe--CCcEEEEecCCCCc------------------------ccc-cccEEEecCCChhhhCCH
Q 020181 81 YTIEGVSI-GGHETCVII--PELKCAFDIGRCPT------------------------RAI-QQNFVFITHGHLDHIGGL 132 (330)
Q Consensus 81 ~~i~g~~~-g~~~t~~li--~~~~iLiD~G~~~~------------------------~~l-~i~~IfiTH~H~DHi~Gl 132 (330)
+.++|.+. |..++|++| ++.+||||+|.... ..+ ++|+|||||.|+||+.|+
T Consensus 3 ~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~ 82 (298)
T PRK04286 3 IIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPF 82 (298)
T ss_pred EEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCc
Confidence 34556533 446678888 56799999995531 011 799999999999999888
Q ss_pred HHHHHHhCcCCCCCCEEEcCcchHHH-HHH------HHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEE-EcCCCC
Q 020181 133 PMYVASRGLYNLKPPTIFVPPSIKED-VEK------LFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF-KTHHVI 204 (330)
Q Consensus 133 ~~l~~~~~~~~~~~l~Iy~~~~~~~~-l~~------~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~-~~~H~~ 204 (330)
..++-... .+..++.||+...+... ... .+............-....+.+++.+.++ +++|++. ++.|..
T Consensus 83 ~~~~y~~~-~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig-~~~V~~~~~v~H~~ 160 (298)
T PRK04286 83 YEDPYELS-DEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFG-GTTIEFSPPVPHGA 160 (298)
T ss_pred cccccccc-cccchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEEC-CEEEEEeccCCCCC
Confidence 66521000 01234556776555421 111 01000000000000012345678899998 9999976 789964
Q ss_pred --CceEEEE----EeccccchhhhcCCChHHHHHHHHcCceeeceeecCeEEEecCCCCccccCchhhhhc--CCCEEEE
Q 020181 205 --PSQGYVI----YLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADAL--RAKILIT 276 (330)
Q Consensus 205 --~s~gy~i----~~~~~kl~~~~~~~pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~--~~d~lI~ 276 (330)
.+.||.+ +.+ | ++++|+|||... ..++....++ ++|+|++
T Consensus 161 ~~~~~Gy~i~~ri~~g----------------------g---------~~~~~~gDt~~~-~~~~~~~~l~~~d~dlLi~ 208 (298)
T PRK04286 161 DGSKLGYVIMVRISDG----------------------D---------ESFVFASDVQGP-LNDEAVEFILEKKPDVVII 208 (298)
T ss_pred CCCccceEEEEEEEeC----------------------C---------EEEEEECCCCCC-CCHHHHHHHhcCCCCEEEe
Confidence 3777755 433 2 589999999821 0112223343 8999999
Q ss_pred EEe--cCCCcccHHHHHhcCCCCchhHHHHHHHhcccccCCceEEEec-cccCc
Q 020181 277 EAT--FLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLTE-GFKSV 327 (330)
Q Consensus 277 E~t--~~~~~~~~~~a~~~~H~t~~~~~~~~l~~~~~~~~~~~~i~lt-Hfs~r 327 (330)
+|. |.... ......+|+++++....+-.+++ .++|+ |.|+.
T Consensus 209 ~~~p~~lk~~---ri~~~~~h~s~~~~~~l~~~~~k-------~liLtHHls~~ 252 (298)
T PRK04286 209 GGPPTYLLGR---RLSEEDLEKGIENLEEIVKNTPE-------TLILDHHLLRD 252 (298)
T ss_pred CCcchhhhhh---hhccccHHHHHHHHHHHHhcCCC-------EEEEecccccc
Confidence 984 33312 11123456665433333222222 56888 87764
No 19
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.74 E-value=1e-16 Score=143.07 Aligned_cols=165 Identities=14% Similarity=0.176 Sum_probs=116.0
Q ss_pred EEEEe--CCcEEEEecCC---CCc----ccccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHHHH
Q 020181 93 TCVII--PELKCAFDIGR---CPT----RAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLF 163 (330)
Q Consensus 93 t~~li--~~~~iLiD~G~---~~~----~~l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~~~ 163 (330)
+|++| ++.++|||++. ... ...++|+||+||.|.||+.|+..+.. ...+.||++..+.+.+...
T Consensus 9 s~~li~~~~~~iLiDP~~~~~~~~~~~~~~~~id~vliTH~H~DH~~~~~~~~~------~~~~~v~~~~~~~~~~~~~- 81 (228)
T PRK00685 9 SAFLIETGGKKILIDPFITGNPLADLKPEDVKVDYILLTHGHGDHLGDTVEIAK------RTGATVIANAELANYLSEK- 81 (228)
T ss_pred eEEEEEECCEEEEECCCCCCCCCCCCChhcCcccEEEeCCCCccccccHHHHHH------hCCCEEEEeHHHHHHHHhc-
Confidence 56777 56699999743 111 12379999999999999999877643 1345699998776554321
Q ss_pred HHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEcCCCCC------------ceEEEEEeccccchhhhcCCChHHHH
Q 020181 164 EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIP------------SQGYVIYLLRKKLKKQYIHLKGKQIE 231 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~~H~~~------------s~gy~i~~~~~kl~~~~~~~pg~~~~ 231 (330)
.+ .+++.++.++.++++ +++|+++|+.|... ++||+|+.++
T Consensus 82 ----~~------~~~~~~~~~~~~~~~-~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~---------------- 134 (228)
T PRK00685 82 ----GV------EKTHPMNIGGTVEFD-GGKVKLTPALHSSSFIDEDGITYLGNPTGFVITFEG---------------- 134 (228)
T ss_pred ----CC------CceeeccCCCcEEEC-CEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEECC----------------
Confidence 01 145678888999997 99999999999653 5899998653
Q ss_pred HHHHcCceeeceeecCeEEEecCCCCccccCchhhhhcCCCEEEEEEecCCCcccHHHHHhcCCCCchhHHHHHHHhccc
Q 020181 232 KLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQS 311 (330)
Q Consensus 232 ~L~~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~lI~E~t~~~~~~~~~~a~~~~H~t~~~~~~~~l~~~~~ 311 (330)
.+++|+|||.+..... .+....++|++++.+. ...||+++|++..+ +.++.
T Consensus 135 ---------------~~i~~~GDt~~~~~~~-~~~~~~~~D~~~~~~~------------~~~h~~~~ea~~~~-~~~~~ 185 (228)
T PRK00685 135 ---------------KTIYHAGDTGLFSDMK-LIGELHKPDVALLPIG------------DNFTMGPEDAALAV-ELIKP 185 (228)
T ss_pred ---------------eEEEEecCccchhHHH-HHHHhhCCCEEEEecC------------CccccCHHHHHHHH-HhhCC
Confidence 4899999998743211 1222347899997541 24699998765554 56665
Q ss_pred ccCCceEEEecccc
Q 020181 312 KVSAKVVPLTEGFK 325 (330)
Q Consensus 312 ~~~~~~~i~ltHfs 325 (330)
. .++++|+.
T Consensus 186 k-----~~v~~H~~ 194 (228)
T PRK00685 186 K-----IVIPMHYN 194 (228)
T ss_pred C-----EEEEeccC
Confidence 4 78999985
No 20
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.2e-16 Score=153.10 Aligned_cols=162 Identities=24% Similarity=0.389 Sum_probs=117.7
Q ss_pred EEEecCceEEEEe--CCcEEEEecCCCCccc-----c-----cccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcC
Q 020181 85 GVSIGGHETCVII--PELKCAFDIGRCPTRA-----I-----QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVP 152 (330)
Q Consensus 85 g~~~g~~~t~~li--~~~~iLiD~G~~~~~~-----l-----~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~ 152 (330)
|.+..-.++|+++ ++..+|+|||...... . ++|+++|||+|.||+++++.+.... .+ ..||++
T Consensus 7 g~~~evg~s~~~l~~~~~~il~D~G~~~~~~~~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~~----~~-~~v~aT 81 (427)
T COG1236 7 GAAREVGRSCVLLETGGTRILLDCGLFPGDPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRNG----FE-GPVYAT 81 (427)
T ss_pred cccCCcCcEEEEEEECCceEEEECCCCcCcCCccCCCCCCCCCcCEEEeccCchhhhcccHHHHHhc----cC-Cceeec
Confidence 3333345567777 5679999999643221 1 3799999999999999999997632 23 349999
Q ss_pred cchHHHHHHHHHHhhhcCCc------------ccceEEEEcCCCCEEEeCCcEEEEEEEcCCCCCceEEEEEeccccchh
Q 020181 153 PSIKEDVEKLFEIHRSLGNV------------ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKK 220 (330)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~i~~g~~~~i~~~~~v~~~~~~H~~~s~gy~i~~~~~kl~~ 220 (330)
+.+.+..+-++......... ...-+++.++.+++++++ +++|++++++|.+|+.+|.++..+
T Consensus 82 ~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~-~~~v~~~~AGHilGsa~~~le~~~----- 155 (427)
T COG1236 82 PPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVG-GVKVTFYNAGHILGSAAILLEVDG----- 155 (427)
T ss_pred cCHHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEee-eEEEEEecCCCccceeEEEEEeCC-----
Confidence 99999887776655433210 112345668999999998 899999999999999999998653
Q ss_pred hhcCCChHHHHHHHHcCceeeceeecCeEEEecCCCCc--cccCchhhhhcC-CCEEEEEEecCCCcc
Q 020181 221 QYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE--FMLNPRNADALR-AKILITEATFLDDEM 285 (330)
Q Consensus 221 ~~~~~pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~~--~~~~~~~~~~~~-~d~lI~E~t~~~~~~ 285 (330)
.+++|+||.... ..+.. ..... +|+||+|+||.+..+
T Consensus 156 --------------------------~~ilytGD~~~~~~~l~~~--a~~~~~~DvLI~EsTYg~~~~ 195 (427)
T COG1236 156 --------------------------GRILYTGDVKRRKDRLLNG--AELPPCIDVLIVESTYGDRLH 195 (427)
T ss_pred --------------------------ceEEEEeccCCCcCCCCCc--cccCCCCcEEEEecccCCccC
Confidence 369999999862 22211 11222 699999999998764
No 21
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.66 E-value=9.2e-16 Score=138.61 Aligned_cols=174 Identities=25% Similarity=0.381 Sum_probs=120.6
Q ss_pred EEEEecCceEEEEe--CCcEEEEecCCCCc-----cc-----------c--cccEEEecCCChhhhCCHHHHHHHhCcCC
Q 020181 84 EGVSIGGHETCVII--PELKCAFDIGRCPT-----RA-----------I--QQNFVFITHGHLDHIGGLPMYVASRGLYN 143 (330)
Q Consensus 84 ~g~~~g~~~t~~li--~~~~iLiD~G~~~~-----~~-----------l--~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~ 143 (330)
+|.+..-.++|+++ ++++|++|||.... +. + -||.|+|||.|.||++.||++-+..++
T Consensus 9 LGAGQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY-- 86 (501)
T KOG1136|consen 9 LGAGQDVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGY-- 86 (501)
T ss_pred ccCCcccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCC--
Confidence 34444445678887 78899999995431 11 1 489999999999999999999775544
Q ss_pred CCCCEEEcCcchHHHHHHHHHHhhhc----CCc----------ccceEEEEcCCCCEEEeCCcEEEEEEEcCCCCCceEE
Q 020181 144 LKPPTIFVPPSIKEDVEKLFEIHRSL----GNV----------ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209 (330)
Q Consensus 144 ~~~l~Iy~~~~~~~~l~~~~~~~~~~----~~~----------~~~~~~~~i~~g~~~~i~~~~~v~~~~~~H~~~s~gy 209 (330)
..+ ||.+-.+++..--++..+... .+. ..--++..+.-.+++.+++++.|+++.++|..++..|
T Consensus 87 -~GP-IYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGAaMf 164 (501)
T KOG1136|consen 87 -DGP-IYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGAAMF 164 (501)
T ss_pred -CCc-eEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeecccccceeEE
Confidence 333 898888876543333333211 110 0112445666678889888999999999999999999
Q ss_pred EEEeccccchhhhcCCChHHHHHHHHcCceeeceeecCeEEEecCCCC--ccccCchhhhhcCCCEEEEEEecCCCcccH
Q 020181 210 VIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTS--EFMLNPRNADALRAKILITEATFLDDEMSI 287 (330)
Q Consensus 210 ~i~~~~~kl~~~~~~~pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~--~~~~~~~~~~~~~~d~lI~E~t~~~~~~~~ 287 (330)
.+.-++ .+++|+||... ++.+......--+.|+||.|+||+....+.
T Consensus 165 ~ikvGd-------------------------------~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsESTYattiRds 213 (501)
T KOG1136|consen 165 YIKVGD-------------------------------QSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYATTIRDS 213 (501)
T ss_pred EEEecc-------------------------------eeEEEecCccCCcccccchhhhccccCceEEeeccceeeeccc
Confidence 988664 48999999764 444443332334789999999999887544
Q ss_pred HHHHh
Q 020181 288 EHAQQ 292 (330)
Q Consensus 288 ~~a~~ 292 (330)
.++++
T Consensus 214 kr~rE 218 (501)
T KOG1136|consen 214 KRCRE 218 (501)
T ss_pred cchhH
Confidence 44443
No 22
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.66 E-value=2.5e-15 Score=142.32 Aligned_cols=159 Identities=25% Similarity=0.366 Sum_probs=114.7
Q ss_pred ceEEEEe--CCcEEEEecCCCCccc---------------ccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCc
Q 020181 91 HETCVII--PELKCAFDIGRCPTRA---------------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPP 153 (330)
Q Consensus 91 ~~t~~li--~~~~iLiD~G~~~~~~---------------l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~ 153 (330)
.+||+++ ++.++|+|||...... ..+|||+|||+|.||++=+|.|.+. +...+ ||+++
T Consensus 193 GRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkY----gy~GP-VY~T~ 267 (637)
T COG1782 193 GRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKY----GYDGP-VYCTP 267 (637)
T ss_pred cceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhhc----CCCCC-eeeCC
Confidence 5688888 5679999999543221 1599999999999999999999763 33344 99999
Q ss_pred chHHHHHHHHHHhhhc---CCcccc----------eEEEEcCCCCEEEeCCcEEEEEEEcCCCCCceEEEEEeccccchh
Q 020181 154 SIKEDVEKLFEIHRSL---GNVELN----------LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKK 220 (330)
Q Consensus 154 ~~~~~l~~~~~~~~~~---~~~~~~----------~~~~~i~~g~~~~i~~~~~v~~~~~~H~~~s~gy~i~~~~~kl~~ 220 (330)
.+.+.+--+...+..+ .+..++ ....+++.|++-++.+++++++..++|..+|..-.+.-++
T Consensus 268 PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~HlHIGd----- 342 (637)
T COG1782 268 PTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGD----- 342 (637)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeEEEecC-----
Confidence 9987654332222111 111111 2345778888888888999999999999988776666554
Q ss_pred hhcCCChHHHHHHHHcCceeeceeecCeEEEecCCCCc--cccCchhhhhcCCCEEEEEEecCCC
Q 020181 221 QYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE--FMLNPRNADALRAKILITEATFLDD 283 (330)
Q Consensus 221 ~~~~~pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~~--~~~~~~~~~~~~~d~lI~E~t~~~~ 283 (330)
|. .+++|+||..++ +++++....+.+++.||+|+||...
T Consensus 343 ----------------Gl--------yNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg~ 383 (637)
T COG1782 343 ----------------GL--------YNIVYTGDFKFEKTRLLEPANNKFPRVETLIMESTYGGR 383 (637)
T ss_pred ----------------Cc--------eeEEEecccccceeeecChhhccCcchhheeeeeccCCc
Confidence 32 589999999873 4455555567789999999999833
No 23
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.52 E-value=4.1e-13 Score=127.02 Aligned_cols=153 Identities=13% Similarity=0.152 Sum_probs=101.0
Q ss_pred cccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEE
Q 020181 115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIV 194 (330)
Q Consensus 115 ~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~ 194 (330)
+||+||+||.|.||+ +.+.+..-... ......+++|..+.+.+... .+ ...++++++.|+.++++ +++
T Consensus 109 ~IDaVLiTH~H~DHl-D~~tl~~l~~~-~~~~~~~v~p~~~~~~~~~~-----Gv----p~~rv~~v~~Ge~i~ig-~v~ 176 (355)
T PRK11709 109 EIDAVLATHDHSDHI-DVNVAAAVLQN-CADHVKFIGPQACVDLWIGW-----GV----PKERCIVVKPGDVVKVK-DIK 176 (355)
T ss_pred CCCEEEECCCccccc-ChHHHHHHHhh-cCCCcEEEEcHHHHHHHHhc-----CC----CcceEEEecCCCcEEEC-CEE
Confidence 699999999999998 44444221110 11345689998886654321 11 13467788999999997 999
Q ss_pred EEEEEcCCC----------------------CCceEEEEEeccccchhhhcCCChHHHHHHHHcCceeeceeecCeEEEe
Q 020181 195 VRPFKTHHV----------------------IPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFT 252 (330)
Q Consensus 195 v~~~~~~H~----------------------~~s~gy~i~~~~~kl~~~~~~~pg~~~~~L~~~G~~i~~~~~~~~i~y~ 252 (330)
|+++++.|. ..++||+|+.++ .+++|+
T Consensus 177 It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~-------------------------------~tvy~s 225 (355)
T PRK11709 177 IHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPG-------------------------------GNIYHS 225 (355)
T ss_pred EEEEeccccccccccccccccccccccccCCcceEEEEEEeCC-------------------------------eEEEEe
Confidence 999999552 124788887653 489999
Q ss_pred cCCCCccccCchhhhhcCCCEEEEEEecCCCcccHHHHHhcCCCCchhHHHHHHHhcccccCCceEEEeccc
Q 020181 253 GDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLTEGF 324 (330)
Q Consensus 253 gDt~~~~~~~~~~~~~~~~d~lI~E~t~~~~~~~~~~a~~~~H~t~~~~~~~~l~~~~~~~~~~~~i~ltHf 324 (330)
|||.+.....+.. ...++|++++... .+.. ....||+++|++..+ +.++.. +++++|+
T Consensus 226 GDT~~~~~~~~i~-~~~~iDvall~iG--~~p~-----~~~~hm~p~ea~~~a-~~l~ak-----~vIpiH~ 283 (355)
T PRK11709 226 GDSHYSNYFAKHG-NDHQIDVALGSYG--ENPR-----GITDKMTSIDILRMA-ESLNAK-----VVIPVHH 283 (355)
T ss_pred CCCCccHHHHHHH-hcCCCCEEEecCC--CCCC-----CCcCCCCHHHHHHHH-HHcCCC-----EEEEECh
Confidence 9999853322211 1236899998543 2220 135699998665555 566665 7899997
No 24
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=99.50 E-value=2e-13 Score=127.23 Aligned_cols=178 Identities=25% Similarity=0.302 Sum_probs=116.0
Q ss_pred cccEEEecCCChhhhCCHHHHHHHhCcCC--CCCCEEEcCcchHHHHHH-HHHHhhhcC--Ccc-----cceEEEEcCCC
Q 020181 115 QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPPSIKEDVEK-LFEIHRSLG--NVE-----LNLDLVALDVG 184 (330)
Q Consensus 115 ~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~--~~~l~Iy~~~~~~~~l~~-~~~~~~~~~--~~~-----~~~~~~~i~~g 184 (330)
.|.+.||||.|.||+.||. +.+-.+.. ..+.+|||-+.+.+.+++ +|+...|.+ ... ..+++..+..+
T Consensus 79 ~I~~ylItH~HLDHi~gLv--insp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~ 156 (335)
T PF02112_consen 79 HIKGYLITHPHLDHIAGLV--INSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPG 156 (335)
T ss_pred hhheEEecCCchhhHHHHH--hcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeecccc
Confidence 5899999999999999984 33333322 256679999999999986 566544422 111 12344444444
Q ss_pred CEEEeC------------CcEEEEEEEcCCCC-C-----ceEEEEEeccccchhhhcCCChHHHHHHHHcCceeeceeec
Q 020181 185 ETYEMR------------NDIVVRPFKTHHVI-P-----SQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILS 246 (330)
Q Consensus 185 ~~~~i~------------~~~~v~~~~~~H~~-~-----s~gy~i~~~~~kl~~~~~~~pg~~~~~L~~~G~~i~~~~~~ 246 (330)
+...+. .+..|+++++.|.. . |.+|.|.... .|
T Consensus 157 ~~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~--------------------t~--------- 207 (335)
T PF02112_consen 157 ELIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNI--------------------TG--------- 207 (335)
T ss_pred ceeeccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCC--------------------CC---------
Confidence 322211 13567789999964 2 7999998653 12
Q ss_pred CeEEEecCCCCcc---------ccCchhhh--hcCCCEEEEEEecCCCcccHHHHHhcCCCCchhHHHHHHHhcccc---
Q 020181 247 PEVAFTGDTTSEF---------MLNPRNAD--ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSK--- 312 (330)
Q Consensus 247 ~~i~y~gDt~~~~---------~~~~~~~~--~~~~d~lI~E~t~~~~~~~~~~a~~~~H~t~~~~~~~~l~~~~~~--- 312 (330)
..++|.|||.++. .|...... ......+++||.|.+.. ..+.-+|||++. .+...|+.|.++
T Consensus 208 ~~il~fGD~e~Ds~s~~~~~~~iW~~~ap~I~~~~LkaI~IEcS~~~~~---~d~~LyGHLtP~-~Li~EL~~L~~~~~~ 283 (335)
T PF02112_consen 208 DEILFFGDTEPDSVSKSPRNQKIWRYAAPKIASGKLKAIFIECSYPNSQ---PDSQLYGHLTPK-HLIEELKVLASKVGQ 283 (335)
T ss_pred CEEEEEeCCCCCccccCchHHHHHHHHHhhccccccCEEEEEeCCCCCC---CchHhhccCCHH-HHHHHHHHHHhcccc
Confidence 5899999999742 22211111 24689999999999886 335789999997 444444444443
Q ss_pred ---cCCceEEEeccccCc
Q 020181 313 ---VSAKVVPLTEGFKSV 327 (330)
Q Consensus 313 ---~~~~~~i~ltHfs~r 327 (330)
.-..+.|+++|....
T Consensus 284 ~~~~L~gL~VIItHIK~~ 301 (335)
T PF02112_consen 284 TSPPLKGLNVIITHIKPS 301 (335)
T ss_pred ccCCCCCCeEEEEEeCCc
Confidence 234568999998754
No 25
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.50 E-value=1.9e-13 Score=116.52 Aligned_cols=116 Identities=19% Similarity=0.273 Sum_probs=82.7
Q ss_pred CceEEEEe--CCcEEEEecCCCCccc-------c---cccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHH
Q 020181 90 GHETCVII--PELKCAFDIGRCPTRA-------I---QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKE 157 (330)
Q Consensus 90 ~~~t~~li--~~~~iLiD~G~~~~~~-------l---~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~ 157 (330)
+..+|++| ++..+|||||.+.... + ++++||+||.|.||++|++.+.+. ..++||+++.+.+
T Consensus 4 ~~~~~~li~~~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~------~~~~i~~~~~~~~ 77 (183)
T smart00849 4 VGVNSYLVEGDGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA------PGAPVYAPEGTAE 77 (183)
T ss_pred cceeEEEEEeCCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC------CCCcEEEchhhhH
Confidence 45667777 5678999999654311 1 799999999999999999988663 2346899999888
Q ss_pred HHHHHHHHhhh-cCCcccceEEEEcCCCCEEEeCCcEEEEEEEc-CCCCCceEEEEE
Q 020181 158 DVEKLFEIHRS-LGNVELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIPSQGYVIY 212 (330)
Q Consensus 158 ~l~~~~~~~~~-~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~-~H~~~s~gy~i~ 212 (330)
.++........ .........+..++.++++.++ +.+++++++ +|..++++|.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~ 133 (183)
T smart00849 78 LLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLG-GLELEVIHTPGHTPGSIVLYLP 133 (183)
T ss_pred HHhccchhccccCcCCCCCccceecCCCCEEEeC-CceEEEEECCCCCCCcEEEEEC
Confidence 77643221000 0001112345667888999997 888888888 788899998886
No 26
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.38 E-value=4.2e-12 Score=122.53 Aligned_cols=111 Identities=16% Similarity=0.253 Sum_probs=81.9
Q ss_pred EecCceEEEEe-CCcEEEEecCCCCcc---------c---ccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCc
Q 020181 87 SIGGHETCVII-PELKCAFDIGRCPTR---------A---IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPP 153 (330)
Q Consensus 87 ~~g~~~t~~li-~~~~iLiD~G~~~~~---------~---l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~ 153 (330)
..|-..+||+| ++..+|||+|.+... . -+|++|++||.|.||++|++.+++. ....+||+++
T Consensus 28 ~~g~~~NsyLI~~~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~-----~p~a~V~~~~ 102 (394)
T PRK11921 28 HRGSSYNSYLIKDEKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKE-----IPDTPIYCTK 102 (394)
T ss_pred CCceEEEEEEEeCCCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHH-----CCCCEEEECH
Confidence 34556678888 556899999964211 0 1699999999999999999998763 2345799998
Q ss_pred chHHHHHHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEcC--CCCCceEEEEE
Q 020181 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTH--HVIPSQGYVIY 212 (330)
Q Consensus 154 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~~--H~~~s~gy~i~ 212 (330)
...+.+...+. ...+++.+++|+.++++ +.+++++++. |.++++.+.++
T Consensus 103 ~~~~~l~~~~~---------~~~~~~~v~~g~~l~lG-~~~l~~i~tP~~H~p~~~~~y~~ 153 (394)
T PRK11921 103 NGAKSLKGHYH---------QDWNFVVVKTGDRLEIG-SNELIFIEAPMLHWPDSMFTYLT 153 (394)
T ss_pred HHHHHHHHHhC---------CCCceEEeCCCCEEeeC-CeEEEEEeCCCCCCCCceEEEEc
Confidence 87766543221 12345667889999998 9999999773 99999888775
No 27
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.35 E-value=6.5e-12 Score=113.74 Aligned_cols=97 Identities=15% Similarity=0.302 Sum_probs=72.0
Q ss_pred eEEEEe-C--CcEEEEecCCCCc--c-----cccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHH
Q 020181 92 ETCVII-P--ELKCAFDIGRCPT--R-----AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEK 161 (330)
Q Consensus 92 ~t~~li-~--~~~iLiD~G~~~~--~-----~l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~ 161 (330)
+.+|++ + +..+|||+|.... . ..++++||+||.|+||++|+..+.+.. ++.||+++...
T Consensus 10 N~~yli~~~~~~~ilID~g~~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~------~~~V~~~~~~~----- 78 (248)
T TIGR03413 10 NYIWLLHDPDGQAAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAF------PAPVYGPAEER----- 78 (248)
T ss_pred EEEEEEEcCCCCEEEEcCCChHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHC------CCeEEeccccc-----
Confidence 345555 3 2589999996421 1 137999999999999999999996632 25699987540
Q ss_pred HHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEc-CCCCCceEEEEE
Q 020181 162 LFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIPSQGYVIY 212 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~-~H~~~s~gy~i~ 212 (330)
+. ...+.+.+|+.+.++ +..|+++++ +|+.++++|.+.
T Consensus 79 -------~~-----~~~~~v~~g~~~~~g-~~~i~v~~tpGHT~g~i~~~~~ 117 (248)
T TIGR03413 79 -------IP-----GITHPVKDGDTVTLG-GLEFEVLAVPGHTLGHIAYYLP 117 (248)
T ss_pred -------CC-----CCcEEeCCCCEEEEC-CEEEEEEECCCCCcccEEEEEC
Confidence 11 112457789999998 899999998 599999999886
No 28
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=99.32 E-value=1.2e-11 Score=109.32 Aligned_cols=177 Identities=20% Similarity=0.205 Sum_probs=115.9
Q ss_pred cccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHH-HHHHhhhcCC---cccceEEEEcCCCCEEEeC
Q 020181 115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEK-LFEIHRSLGN---VELNLDLVALDVGETYEMR 190 (330)
Q Consensus 115 ~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~-~~~~~~~~~~---~~~~~~~~~i~~g~~~~i~ 190 (330)
.|...||||+|.|||.|+. +..-.+...++-+|||-..+.+.+++ .|++..|.+. ..-.+++..+++.+...+.
T Consensus 112 ~I~~y~ITH~HLDHIsGlV--inSp~~~~qkkkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt 189 (356)
T COG5212 112 SINSYFITHAHLDHISGLV--INSPDDSKQKKKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLT 189 (356)
T ss_pred hhhheEeccccccchhcee--ecCccccccCCceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeee
Confidence 6899999999999999983 23333334567789999999998887 3554434221 1225677788877654432
Q ss_pred C-cEEEEEEEcCCCC----C--ceEEEEEeccccchhhhcCCChHHHHHHHHcCceeeceeecCeEEEecCCCCcccc--
Q 020181 191 N-DIVVRPFKTHHVI----P--SQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFML-- 261 (330)
Q Consensus 191 ~-~~~v~~~~~~H~~----~--s~gy~i~~~~~kl~~~~~~~pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~~~~~-- 261 (330)
- .+.+.+||+.|.. + +..|.|..... . .-++|+||+.++..-
T Consensus 190 ~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS--------------------~---------~~f~~fGDvepD~vese 240 (356)
T COG5212 190 LTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKS--------------------N---------EFFAYFGDVEPDDVESE 240 (356)
T ss_pred eeeecceeeeccCCcccCCcccceEEEEecCCC--------------------c---------ceEEEecCCCcchhhhh
Confidence 1 4779999999964 3 46677764311 1 358999999984321
Q ss_pred ---Cchhh----h--hcCCCEEEEEEecCCCcccHHHHHhcCCCCchhHHHHHHHhcccc-----cCCceEEEeccccC
Q 020181 262 ---NPRNA----D--ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSK-----VSAKVVPLTEGFKS 326 (330)
Q Consensus 262 ---~~~~~----~--~~~~d~lI~E~t~~~~~~~~~~a~~~~H~t~~~~~~~~l~~~~~~-----~~~~~~i~ltHfs~ 326 (330)
+..++ . .+...-+++||.|.+.. +...-.|||++. -....+..++.+ .-..+.+++||..+
T Consensus 241 ~ll~~~Wr~~ae~I~q~~LkgiliEcS~P~~~---~~~~LfGH~~P~-~L~nEL~~L~~l~~s~~~l~gL~vviTHiKs 315 (356)
T COG5212 241 KLLDTVWRKLAEKITQQQLKGILIECSYPNDV---ADNKLFGHMTPT-WLLNELKKLEQLSGSGQPLKGLPVVITHIKS 315 (356)
T ss_pred HHHHHHHHHHHHhhhHHhhCceEEEecCCCCC---ChhHhhcccChH-HHHHHHHHHHHHhccCCCCCCccEEEEeccC
Confidence 11111 1 13578899999998876 233579999996 444445555542 23445678899864
No 29
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=99.32 E-value=1.8e-12 Score=123.93 Aligned_cols=159 Identities=24% Similarity=0.327 Sum_probs=110.3
Q ss_pred ceEEEEe--CCcEEEEecCCCCc--c-----------cccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcch
Q 020181 91 HETCVII--PELKCAFDIGRCPT--R-----------AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155 (330)
Q Consensus 91 ~~t~~li--~~~~iLiD~G~~~~--~-----------~l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~ 155 (330)
.++|.++ .++.+++|||.... . .-.+|.++|||+|+||++.+|++++.-.+.+ .+|.+..+
T Consensus 26 GRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~g----rvfmth~T 101 (668)
T KOG1137|consen 26 GRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIG----RVFMTHPT 101 (668)
T ss_pred CceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeeccccc----eeEEecch
Confidence 5678877 68899999995321 1 1179999999999999999999987555533 37888888
Q ss_pred HHHHHHHHHHhhhcCCc-------------ccceEEEEcCCCCEEEeCCcEEEEEEEcCCCCCceEEEEEeccccchhhh
Q 020181 156 KEDVEKLFEIHRSLGNV-------------ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQY 222 (330)
Q Consensus 156 ~~~l~~~~~~~~~~~~~-------------~~~~~~~~i~~g~~~~i~~~~~v~~~~~~H~~~s~gy~i~~~~~kl~~~~ 222 (330)
+...+-.+..+...... ....++..++..+..++. |++|.++.++|..+++.|.++..
T Consensus 102 kAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~-gIkf~p~~aGhVlgacMf~veia-------- 172 (668)
T KOG1137|consen 102 KAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVN-GIKFWPYHAGHVLGACMFMVEIA-------- 172 (668)
T ss_pred HHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccC-CeEEEeeccchhhhheeeeeeec--------
Confidence 77666555443321100 011233344555667775 99999999999999999999864
Q ss_pred cCCChHHHHHHHHcCceeeceeecCeEEEecCCCCcc--ccCchhhhhcCCCEEEEEEecCCCcc
Q 020181 223 IHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF--MLNPRNADALRAKILITEATFLDDEM 285 (330)
Q Consensus 223 ~~~pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~~~--~~~~~~~~~~~~d~lI~E~t~~~~~~ 285 (330)
| -+++|+||...+. .+....-.-.+.|++|.|+||+...+
T Consensus 173 --------------g---------v~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h 214 (668)
T KOG1137|consen 173 --------------G---------VRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIH 214 (668)
T ss_pred --------------e---------EEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEec
Confidence 4 3899999998732 11111001247899999999987654
No 30
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.28 E-value=4.3e-11 Score=108.86 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=71.1
Q ss_pred ceEEEEe-C---CcEEEEecCCCCc-------ccccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHH
Q 020181 91 HETCVII-P---ELKCAFDIGRCPT-------RAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDV 159 (330)
Q Consensus 91 ~~t~~li-~---~~~iLiD~G~~~~-------~~l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l 159 (330)
.+-+|++ + +..+|||+|..-. ..++|++||+||.|+||++|+..|.+.. ..++||++....
T Consensus 11 dNy~Yli~d~~~~~~vlIDp~~~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~-----~~~~V~~~~~~~--- 82 (258)
T PLN02469 11 DNYAYLIIDESTKDAAVVDPVDPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLV-----PGIKVYGGSLDN--- 82 (258)
T ss_pred ceEEEEEEeCCCCeEEEECCCChHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHC-----CCCEEEEechhc---
Confidence 3336666 3 2589999994211 0137999999999999999999997632 235699875320
Q ss_pred HHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEc-CCCCCceEEEEEe
Q 020181 160 EKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIPSQGYVIYL 213 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~-~H~~~s~gy~i~~ 213 (330)
.. .. .+.+..|+.+.+++++.++++.+ +|+.++++|.+..
T Consensus 83 ---------~~----~~-~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~ 123 (258)
T PLN02469 83 ---------VK----GC-THPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTG 123 (258)
T ss_pred ---------CC----CC-CeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEecc
Confidence 01 01 14567889999973478888888 8999999998863
No 31
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.27 E-value=3.3e-11 Score=109.30 Aligned_cols=90 Identities=22% Similarity=0.268 Sum_probs=67.0
Q ss_pred CcEEEEecCCCCc--c-----cccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHHHHHHhhhcCC
Q 020181 99 ELKCAFDIGRCPT--R-----AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGN 171 (330)
Q Consensus 99 ~~~iLiD~G~~~~--~-----~l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~~~~~~~~~~~ 171 (330)
+..+|||+|..-. . ..++++|++||.|.||++|+..|.+.. ....||++..... .
T Consensus 22 ~~~ilIDpg~~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~-----~~~~V~~~~~~~~------------~- 83 (251)
T PRK10241 22 GRCLIVDPGEAEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKF-----PQIVVYGPQETQD------------K- 83 (251)
T ss_pred CcEEEECCCChHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHC-----CCCEEEecccccc------------c-
Confidence 4589999997521 1 136899999999999999999997642 3356999764311 0
Q ss_pred cccceEEEEcCCCCEEEeCCcEEEEEEEc-CCCCCceEEEE
Q 020181 172 VELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIPSQGYVI 211 (330)
Q Consensus 172 ~~~~~~~~~i~~g~~~~i~~~~~v~~~~~-~H~~~s~gy~i 211 (330)
...+.+..|+.+.++ +..++++.+ +|+.++++|..
T Consensus 84 ----~~~~~v~~g~~i~ig-~~~~~vi~tPGHT~ghi~~~~ 119 (251)
T PRK10241 84 ----GTTQVVKDGETAFVL-GHEFSVFATPGHTLGHICYFS 119 (251)
T ss_pred ----CCceEeCCCCEEEeC-CcEEEEEEcCCCCccceeeec
Confidence 012456788999997 889999998 79999999953
No 32
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.26 E-value=5.3e-11 Score=117.30 Aligned_cols=113 Identities=16% Similarity=0.213 Sum_probs=82.3
Q ss_pred EecCceEEEEe-CCcEEEEecCCCCc-----cc-------ccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCc
Q 020181 87 SIGGHETCVII-PELKCAFDIGRCPT-----RA-------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPP 153 (330)
Q Consensus 87 ~~g~~~t~~li-~~~~iLiD~G~~~~-----~~-------l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~ 153 (330)
..|...+||+| ++..+|||+|.... .+ -+|++|++||.|.||++|++.|++. ....+||+++
T Consensus 30 ~~G~t~NsYLI~~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~-----~p~a~V~~s~ 104 (479)
T PRK05452 30 LRGSSYNSYLIREEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQ-----IPDTPIYCTA 104 (479)
T ss_pred CCCcEEEEEEEECCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHH-----CCCCEEEECH
Confidence 34555678888 56789999995321 01 1699999999999999999999763 2345799998
Q ss_pred chHHHHHHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEc--CCCCCceEEEEE
Q 020181 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT--HHVIPSQGYVIY 212 (330)
Q Consensus 154 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~--~H~~~s~gy~i~ 212 (330)
.....+..... ....+++.++.|+.+.++++.+++++.+ .|.++++.+.++
T Consensus 105 ~~~~~l~~~~~--------~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~ 157 (479)
T PRK05452 105 NAIDSINGHHH--------HPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLT 157 (479)
T ss_pred HHHHHHHHhhc--------CCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEc
Confidence 88766543211 1134567788999999975567888877 399999988875
No 33
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.26 E-value=5.4e-11 Score=111.18 Aligned_cols=110 Identities=17% Similarity=0.183 Sum_probs=77.8
Q ss_pred eEEEEEEecCceEEEEe-C---CcEEEEecCCCCcc-------cccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEE
Q 020181 81 YTIEGVSIGGHETCVII-P---ELKCAFDIGRCPTR-------AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTI 149 (330)
Q Consensus 81 ~~i~g~~~g~~~t~~li-~---~~~iLiD~G~~~~~-------~l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~I 149 (330)
++|.....-..+.+|++ + +..++||+|..... ..+|++|++||.|+||++|+..|.+.. ..+|
T Consensus 76 ~~i~~ip~l~dNy~Yli~d~~t~~~~vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~------ga~V 149 (329)
T PLN02398 76 LQIELVPCLKDNYAYLLHDEDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY------GAKV 149 (329)
T ss_pred cEEEEEeeeCceEEEEEEECCCCEEEEEcCCCHHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhc------CCEE
Confidence 34554444444456666 3 34799999854211 237999999999999999999996632 3569
Q ss_pred EcCcchHHHHHHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEc-CCCCCceEEEEE
Q 020181 150 FVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIPSQGYVIY 212 (330)
Q Consensus 150 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~-~H~~~s~gy~i~ 212 (330)
|++....+.+ . .+. +.+++|+++.++ +.+++++.+ +|+.++++|.+.
T Consensus 150 ~g~~~~~~~i----------~----~~d-~~v~dGd~i~lg-g~~l~vi~tPGHT~GhI~~~~~ 197 (329)
T PLN02398 150 IGSAVDKDRI----------P----GID-IVLKDGDKWMFA-GHEVLVMETPGHTRGHISFYFP 197 (329)
T ss_pred EEehHHhhhc----------c----CCc-EEeCCCCEEEEC-CeEEEEEeCCCcCCCCEEEEEC
Confidence 9987643321 1 111 356788999997 889999999 799999999875
No 34
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.16 E-value=3.3e-10 Score=96.37 Aligned_cols=49 Identities=35% Similarity=0.513 Sum_probs=39.5
Q ss_pred CceEEEEe--CCcEEEEecCCCCccc------------ccccEEEecCCChhhhCCHHHHHHH
Q 020181 90 GHETCVII--PELKCAFDIGRCPTRA------------IQQNFVFITHGHLDHIGGLPMYVAS 138 (330)
Q Consensus 90 ~~~t~~li--~~~~iLiD~G~~~~~~------------l~i~~IfiTH~H~DHi~Gl~~l~~~ 138 (330)
...+|++| ++..+|||+|.+.... .+|++||+||.|.||++|+..+...
T Consensus 4 ~~~n~~li~~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~ 66 (194)
T PF00753_consen 4 GGSNSYLIEGGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEA 66 (194)
T ss_dssp EEEEEEEEEETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHH
T ss_pred eeEEEEEEEECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccc
Confidence 34567777 5679999999865321 2799999999999999999999774
No 35
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.13 E-value=4.2e-10 Score=101.82 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=69.8
Q ss_pred ceEEEEe-C-----CcEEEEecCCCC-cc--------cccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcch
Q 020181 91 HETCVII-P-----ELKCAFDIGRCP-TR--------AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155 (330)
Q Consensus 91 ~~t~~li-~-----~~~iLiD~G~~~-~~--------~l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~ 155 (330)
.+.||++ + +..+|||+|... .. .++|.+||+||.|+||++|+..|.... ....+|+.+..
T Consensus 22 ~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~-----~~a~v~~~~~~ 96 (251)
T PLN02962 22 STYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKL-----PGVKSIISKAS 96 (251)
T ss_pred eeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHC-----CCCeEEecccc
Confidence 4556666 3 247999998531 11 137999999999999999999996532 22456664321
Q ss_pred HHHHHHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEc-CCCCCceEEEEEe
Q 020181 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIPSQGYVIYL 213 (330)
Q Consensus 156 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~-~H~~~s~gy~i~~ 213 (330)
. ...+ +.+.+|+.+.++ +..++++.+ +|++++++|.+..
T Consensus 97 ------------~-----~~~d-~~l~~g~~i~~g-~~~l~vi~tPGHT~g~v~~~~~d 136 (251)
T PLN02962 97 ------------G-----SKAD-LFVEPGDKIYFG-DLYLEVRATPGHTAGCVTYVTGE 136 (251)
T ss_pred ------------C-----CCCC-EEeCCCCEEEEC-CEEEEEEECCCCCcCcEEEEecc
Confidence 0 0111 246788999998 999999999 8999999998753
No 36
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.02 E-value=2.5e-09 Score=95.39 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=69.4
Q ss_pred cEEEEecCCCCc--cc---------ccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHHHHHHhhh
Q 020181 100 LKCAFDIGRCPT--RA---------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRS 168 (330)
Q Consensus 100 ~~iLiD~G~~~~--~~---------l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~~~~~~~~ 168 (330)
..+|||+|.... .. .+|++|++||.|.||++|+..+..... ...++..+...............
T Consensus 36 ~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 110 (252)
T COG0491 36 GAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFG-----AAPVIAPAEVPLLLREEILRKAG 110 (252)
T ss_pred ceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcC-----CceEEccchhhhhhhcccccccc
Confidence 689999998763 11 169999999999999999998865321 23456655554433322110000
Q ss_pred --cCCc--ccceEEEEcCCCCEEEeCCcEEEEEEEc-CCCCCceEEEEEe
Q 020181 169 --LGNV--ELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIPSQGYVIYL 213 (330)
Q Consensus 169 --~~~~--~~~~~~~~i~~g~~~~i~~~~~v~~~~~-~H~~~s~gy~i~~ 213 (330)
.... ........+..++.+.++ +..++.+++ +|++++++|.++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~tpGHT~g~~~~~~~~ 159 (252)
T COG0491 111 VTAEAYAAPGASPLRALEDGDELDLG-GLELEVLHTPGHTPGHIVFLLED 159 (252)
T ss_pred cccccCCCCccccceecCCCCEEEec-CeEEEEEECCCCCCCeEEEEECC
Confidence 0000 111233345578888887 777777777 8999999999974
No 37
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.01 E-value=1.7e-09 Score=91.49 Aligned_cols=143 Identities=16% Similarity=0.143 Sum_probs=81.5
Q ss_pred EEEEe--CCcEEEEecCCCCc----ccccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHHHHHHh
Q 020181 93 TCVII--PELKCAFDIGRCPT----RAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIH 166 (330)
Q Consensus 93 t~~li--~~~~iLiD~G~~~~----~~l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~~~~~~ 166 (330)
+|+++ ++.+||+|+..... ...++|+||+||.|.||+.. ..+ ..+ .
T Consensus 8 a~~~ie~~g~~iliDP~~~~~~~~~~~~~~D~IlisH~H~DH~~~-~~l---------~~~---------------~--- 59 (163)
T PF13483_consen 8 ASFLIETGGKRILIDPWFSSVGYAPPPPKADAILISHSHPDHFDP-ETL---------KRL---------------D--- 59 (163)
T ss_dssp TEEEEEETTEEEEES--TTT--T-TSS-B-SEEEESSSSTTT-CC-CCC---------CCH---------------H---
T ss_pred eEEEEEECCEEEEECCCCCccCcccccCCCCEEEECCCccccCCh-hHh---------hhc---------------c---
Confidence 35555 67799999996411 12489999999999999764 111 000 0
Q ss_pred hhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEcCCC-------CCceEEEEEeccccchhhhcCCChHHHHHHHHcCce
Q 020181 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHV-------IPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVE 239 (330)
Q Consensus 167 ~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~~H~-------~~s~gy~i~~~~~kl~~~~~~~pg~~~~~L~~~G~~ 239 (330)
-+.+.+..++.++++ +++|+.++..|. ....||.++.+ |
T Consensus 60 ---------~~~~vv~~~~~~~~~-~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~----------------------g-- 105 (163)
T PF13483_consen 60 ---------RDIHVVAPGGEYRFG-GFKITAVPAYHDGPGGHPRGENVGYLIEVG----------------------G-- 105 (163)
T ss_dssp ---------TSSEEE-TTEEEECT-TEEEEEEEEEE-STGTS-TTCCEEEEEEET----------------------T--
T ss_pred ---------cccEEEccceEEEEe-eeEEEEEeeeccccCCCCcCCeEEEEEEeC----------------------C--
Confidence 122345567889997 999999999884 34789999874 3
Q ss_pred eeceeecCeEEEecCCCCccccCchhhhhcCCCEEEEEEecCCCcccHHHHHhcCCCCchhHHHHHHHhcccccCCceEE
Q 020181 240 ITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVP 319 (330)
Q Consensus 240 i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~lI~E~t~~~~~~~~~~a~~~~H~t~~~~~~~~l~~~~~~~~~~~~i 319 (330)
.++++.||+..... .+......++|++++-+.= ...|..+++.. +++.++.. .+
T Consensus 106 -------~~i~~~Gd~~~~~~-~~~~~~~~~vDvl~~p~~g------------~~~~~~~~a~~-~~~~l~pk-----~v 159 (163)
T PF13483_consen 106 -------VTIYHAGDTGFPPD-DEQLKQLGKVDVLFLPVGG------------PFTMGPEEAAE-LAERLKPK-----LV 159 (163)
T ss_dssp -------EEEEE-TT--S----HHHHHHH-S-SEEEEE--T------------TTS--HHHHHH-HHHHCT-S-----EE
T ss_pred -------CEEEEECCCccCCC-HHHHhcccCCCEEEecCCC------------CcccCHHHHHH-HHHHcCCC-----EE
Confidence 48999999986321 1223345689999996542 23445544333 34667765 66
Q ss_pred Eecc
Q 020181 320 LTEG 323 (330)
Q Consensus 320 ~ltH 323 (330)
+.+|
T Consensus 160 iP~H 163 (163)
T PF13483_consen 160 IPMH 163 (163)
T ss_dssp EEES
T ss_pred EeCC
Confidence 7766
No 38
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=98.90 E-value=1.1e-08 Score=91.79 Aligned_cols=78 Identities=21% Similarity=0.222 Sum_probs=59.9
Q ss_pred ccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcE
Q 020181 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193 (330)
Q Consensus 114 l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~ 193 (330)
.++.+||.||.|+||++|+..|.+... ..+.+|+.. .+.+. .+. +.++.++.+.++ |+
T Consensus 50 ~~l~~Il~THhH~DHsGGn~~i~~~~~----~~~~v~g~~--~~r~~--------------~i~-~~~~~~e~~~~~-g~ 107 (265)
T KOG0813|consen 50 RRLTAILTTHHHYDHSGGNEDIKREIP----YDIKVIGGA--DDRIP--------------GIT-RGLKDGETVTVG-GL 107 (265)
T ss_pred CceeEEEeccccccccCcHHHHHhhcc----CCcEEecCC--hhcCc--------------ccc-ccCCCCcEEEEC-CE
Confidence 379999999999999999999977421 356788874 11000 011 126788999998 99
Q ss_pred EEEEEEc-CCCCCceEEEEEe
Q 020181 194 VVRPFKT-HHVIPSQGYVIYL 213 (330)
Q Consensus 194 ~v~~~~~-~H~~~s~gy~i~~ 213 (330)
+|+++.+ +|+.+++.|.+..
T Consensus 108 ~v~~l~TPgHT~~hi~~~~~~ 128 (265)
T KOG0813|consen 108 EVRCLHTPGHTAGHICYYVTE 128 (265)
T ss_pred EEEEEeCCCccCCcEEEEeec
Confidence 9999999 7999999999974
No 39
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=98.84 E-value=1.9e-08 Score=96.98 Aligned_cols=124 Identities=22% Similarity=0.302 Sum_probs=92.2
Q ss_pred cccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEE
Q 020181 115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIV 194 (330)
Q Consensus 115 ~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~ 194 (330)
...+-|+||+|.||..||..-+. .++ +|++..+...+...+... .-.++.++.++++.+. ++.
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~sW~-------~p~-lYCS~ita~Lv~~~~~v~--------~~~i~~l~l~~~~~i~-~~~ 174 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKSWS-------HPP-LYCSPITARLVPLKVSVT--------KQSIQALDLNQPLEIP-GIQ 174 (481)
T ss_pred ccceeeeeccccccccccccccc-------CCc-ccccccchhhhhhhcccC--------hhhceeecCCCceeec-ceE
Confidence 46889999999999888754321 333 999999998877655411 1124566778899986 999
Q ss_pred EEEEEcCCCCCceEEEEEeccccchhhhcCCChHHHHHHHHcCceeeceeecCeEEEecCCCCccccCc--hhhhhcCCC
Q 020181 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNP--RNADALRAK 272 (330)
Q Consensus 195 v~~~~~~H~~~s~gy~i~~~~~kl~~~~~~~pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~~~~~~~--~~~~~~~~d 272 (330)
|+.++++|.++++.|.++... | +.++++||.+....-.. ....-...|
T Consensus 175 vt~ldAnHCPGa~mf~F~~~~---------------------~---------~~~lhtGDFR~s~~m~~~p~~~~~~~i~ 224 (481)
T KOG1361|consen 175 VTLLDANHCPGAVMFLFELSF---------------------G---------PCILHTGDFRASADMSKEPALTLEQTID 224 (481)
T ss_pred EEEeccccCCCceEEEeecCC---------------------C---------ceEEecCCcccChhhhhChHHhcCCccc
Confidence 999999999999999998542 2 58999999998432211 111225789
Q ss_pred EEEEEEecCCCcc
Q 020181 273 ILITEATFLDDEM 285 (330)
Q Consensus 273 ~lI~E~t~~~~~~ 285 (330)
.+.+|+||-+..+
T Consensus 225 ~lyLDtTycnp~y 237 (481)
T KOG1361|consen 225 ILYLDTTYCNPKY 237 (481)
T ss_pred eEEEeecccCCCC
Confidence 9999999988875
No 40
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=98.78 E-value=2.2e-07 Score=91.71 Aligned_cols=159 Identities=17% Similarity=0.320 Sum_probs=106.2
Q ss_pred ceEEEEe--CCcEEEEecCCCCcc--c---------ccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHH
Q 020181 91 HETCVII--PELKCAFDIGRCPTR--A---------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKE 157 (330)
Q Consensus 91 ~~t~~li--~~~~iLiD~G~~~~~--~---------l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~ 157 (330)
..-|+++ |+.+||||||.+-.- + ..||+|+|||...=|+|||++.+....+ + ..||++-.+..
T Consensus 14 ~~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl---~-~~VYAT~PV~~ 89 (764)
T KOG1135|consen 14 GPLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGL---N-APVYATLPVIK 89 (764)
T ss_pred CcceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCc---c-ceEEEecchhh
Confidence 4446666 888999999976432 1 1799999999999999999999876543 3 45999988865
Q ss_pred HHHHHH-HHhh---h---cCC-----cccc-eEEEEcCCCCEEEeC---CcEEEEEEEcCCCCCceEEEEEeccccchhh
Q 020181 158 DVEKLF-EIHR---S---LGN-----VELN-LDLVALDVGETYEMR---NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQ 221 (330)
Q Consensus 158 ~l~~~~-~~~~---~---~~~-----~~~~-~~~~~i~~g~~~~i~---~~~~v~~~~~~H~~~s~gy~i~~~~~kl~~~ 221 (330)
+-+-.+ ..+. . +.. .... -++..++..+++.+. .|++|++.+++|.+|..-|+|...
T Consensus 90 mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~k~------- 162 (764)
T KOG1135|consen 90 MGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKISKV------- 162 (764)
T ss_pred hhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEEec-------
Confidence 432211 1111 1 100 0111 134567777777663 478999999999998888988743
Q ss_pred hcCCChHHHHHHHHcCceeeceeecCeEEEecCCCC--ccccCc-hhhhhcCCCEEEEEEecCCCc
Q 020181 222 YIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTS--EFMLNP-RNADALRAKILITEATFLDDE 284 (330)
Q Consensus 222 ~~~~pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~--~~~~~~-~~~~~~~~d~lI~E~t~~~~~ 284 (330)
| -+++|+-|... +..+.- .+..+.++.+||.++....-.
T Consensus 163 ---------------~---------E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~~~~~~ 204 (764)
T KOG1135|consen 163 ---------------G---------EDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDANHALYS 204 (764)
T ss_pred ---------------C---------ceEEEEEecccchhcccCCccccccCCcceEEecccccccc
Confidence 2 37999999876 222221 122446789999998754433
No 41
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.66 E-value=1.1e-06 Score=80.07 Aligned_cols=171 Identities=18% Similarity=0.185 Sum_probs=103.0
Q ss_pred EEEEe--CCcEEEEecCCCCcc------------cc-cccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHH
Q 020181 93 TCVII--PELKCAFDIGRCPTR------------AI-QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKE 157 (330)
Q Consensus 93 t~~li--~~~~iLiD~G~~~~~------------~l-~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~ 157 (330)
+|++| ++.+||||+.-.... .+ .+|+|++||.|.||+..-... ... ..+...++.|.....
T Consensus 15 a~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~-~~~---~~~~~~~~~p~~~~~ 90 (258)
T COG2220 15 AAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLI-ALR---TNKAPVVVVPLGAGD 90 (258)
T ss_pred eEEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHH-HHh---cCCCcEEEeHHHHHH
Confidence 45555 567899998743211 12 699999999999998643322 211 112344666665533
Q ss_pred HHHHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEcCCCC-----C--------ceEEEEEeccccchhhhcC
Q 020181 158 DVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVI-----P--------SQGYVIYLLRKKLKKQYIH 224 (330)
Q Consensus 158 ~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~~H~~-----~--------s~gy~i~~~~~kl~~~~~~ 224 (330)
.+.. ......+++.++.++.++++ +++|+++++.|.. + ..||+|+..+
T Consensus 91 ~~~~---------~g~~~~~~~~~~~~~~~~~~-~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g--------- 151 (258)
T COG2220 91 LLIR---------DGVEAERVHELGWGDVIELG-DLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPG--------- 151 (258)
T ss_pred HHHh---------cCCCcceEEeecCCceEEec-CcEEEEEEeecccccccCCCCccccCCceEEEEEeCC---------
Confidence 2211 01123457778889999997 9999999988842 1 5678887653
Q ss_pred CChHHHHHHHHcCceeeceeecCeEEEecCCCCccccCchhhhhcCCCEEEEEEecCCCcccHHHHHhcCCCCchhHHHH
Q 020181 225 LKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQ 304 (330)
Q Consensus 225 ~pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~lI~E~t~~~~~~~~~~a~~~~H~t~~~~~~~ 304 (330)
.++.+.|||.. ...........+|+++++.--.. ...++...++..
T Consensus 152 ----------------------~~iyh~GDt~~--~~~~~~~~~~~~DvallPig~~~---------~~~~~~~~~~~~- 197 (258)
T COG2220 152 ----------------------GRVYHAGDTGY--LFLIIEELDGPVDVALLPIGGYP---------NATMMPPEAAVA- 197 (258)
T ss_pred ----------------------ceEEeccCccH--HHHhhhhhcCCccEEEeccCCCC---------CCccCCHHHHHH-
Confidence 48999999987 11111112223799999865321 245666653333
Q ss_pred HHHhcccccCCceEEEecccc
Q 020181 305 AVLKLQSKVSAKVVPLTEGFK 325 (330)
Q Consensus 305 ~l~~~~~~~~~~~~i~ltHfs 325 (330)
+.+.++.+ +++..|+.
T Consensus 198 ~~~~l~~~-----~viP~Hy~ 213 (258)
T COG2220 198 AAEVLRPK-----RVIPMHYG 213 (258)
T ss_pred HHHHhcCC-----eEEeeccc
Confidence 22445554 66777765
No 42
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.64 E-value=4.1e-08 Score=87.25 Aligned_cols=61 Identities=25% Similarity=0.445 Sum_probs=46.6
Q ss_pred EEEEe--CCcEEEEecCCCCccc-----------ccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHH
Q 020181 93 TCVII--PELKCAFDIGRCPTRA-----------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKE 157 (330)
Q Consensus 93 t~~li--~~~~iLiD~G~~~~~~-----------l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~ 157 (330)
-+++| ++.++|||+|...... -+||+|+|||.|+||++||+.+... +...++||+++....
T Consensus 23 fS~LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~----~~~~i~v~ahp~af~ 96 (259)
T COG1237 23 FSALVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEE----NNPGIPVYAHPDAFK 96 (259)
T ss_pred eEEEEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhc----cCCCceEEeChHHHh
Confidence 35666 4568999999654322 1799999999999999999988662 235677999987755
No 43
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.63 E-value=7.8e-07 Score=91.50 Aligned_cols=111 Identities=14% Similarity=0.230 Sum_probs=73.6
Q ss_pred eEEEEEEecCceEEEEe--CCcEEEEecCCCCcc---------------cccccEEEecCCChhhhCCHHHHHHHhCcCC
Q 020181 81 YTIEGVSIGGHETCVII--PELKCAFDIGRCPTR---------------AIQQNFVFITHGHLDHIGGLPMYVASRGLYN 143 (330)
Q Consensus 81 ~~i~g~~~g~~~t~~li--~~~~iLiD~G~~~~~---------------~l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~ 143 (330)
..|.-...|... |+++ +++.+|||+|+.... ..++|++++||.|.||++|+..+++..
T Consensus 440 ~~v~~lDVGqGd-aili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~---- 514 (662)
T TIGR00361 440 WQVDMLDVGQGL-AMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHH---- 514 (662)
T ss_pred EEEEEEecCCce-EEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhC----
Confidence 455556666544 4444 567899999975321 026999999999999999999998743
Q ss_pred CCCCEEEcCcchHHHHHHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEcCC------CCCceEEEEEec
Q 020181 144 LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHH------VIPSQGYVIYLL 214 (330)
Q Consensus 144 ~~~l~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~~H------~~~s~gy~i~~~ 214 (330)
+...||.+.... . . ......+..|+.++++ +++++++.-.. ...|+.++++.+
T Consensus 515 -~v~~i~~~~~~~-------~-----~----~~~~~~~~~G~~~~~~-~~~~~vL~P~~~~~~~~N~~S~vl~i~~~ 573 (662)
T TIGR00361 515 -PVKRLVIPKGFV-------E-----E----GVAIEECKRGDVWQWQ-GLQFHVLSPEAPDPASKNNHSCVLWVDDG 573 (662)
T ss_pred -CccEEEeccchh-------h-----C----CCceEecCCCCEEeEC-CEEEEEECCCCccCCCCCCCceEEEEEEC
Confidence 233577765411 0 0 1223456788899987 99999885322 124677777654
No 44
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.62 E-value=2.8e-07 Score=87.04 Aligned_cols=109 Identities=13% Similarity=0.136 Sum_probs=82.4
Q ss_pred EecCceEEEEe-CCcEEEEecCCCCccc---------c---cccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCc
Q 020181 87 SIGGHETCVII-PELKCAFDIGRCPTRA---------I---QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPP 153 (330)
Q Consensus 87 ~~g~~~t~~li-~~~~iLiD~G~~~~~~---------l---~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~ 153 (330)
..|-.-++|+| +++.+|||.+..-... + +||+|+++|.-.||.+.++.+++. ....+|++++
T Consensus 31 ~~GttyNSYLI~~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~-----~p~a~ii~s~ 105 (388)
T COG0426 31 PRGTTYNSYLIVGDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLEL-----APNAKIICSK 105 (388)
T ss_pred CCCceeeeEEEeCCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHh-----CCCCEEEeeH
Confidence 34556667777 7789999998654321 1 599999999999999999999863 2356799999
Q ss_pred chHHHHHHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEc--CCCCCceEEE
Q 020181 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT--HHVIPSQGYV 210 (330)
Q Consensus 154 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~--~H~~~s~gy~ 210 (330)
...++++..... ...+..++.|+.+.+| |-+++++++ -|.++++...
T Consensus 106 ~~~~~L~~~~~~---------~~~~~ivk~Gd~ldlG-g~tL~Fi~ap~LHWPd~m~TY 154 (388)
T COG0426 106 LAARFLKGFYHD---------PEWFKIVKTGDTLDLG-GHTLKFIPAPFLHWPDTMFTY 154 (388)
T ss_pred HHHHHHHHhcCC---------ccceeecCCCCEeccC-CcEEEEEeCCCCCCCCceeEe
Confidence 888877765421 1117788999999999 988888888 5888876443
No 45
>PRK11539 ComEC family competence protein; Provisional
Probab=98.55 E-value=1.3e-06 Score=91.16 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=70.5
Q ss_pred eEEEEEEecCceEEEEe-CCcEEEEecCCCCc------c---------cccccEEEecCCChhhhCCHHHHHHHhCcCCC
Q 020181 81 YTIEGVSIGGHETCVII-PELKCAFDIGRCPT------R---------AIQQNFVFITHGHLDHIGGLPMYVASRGLYNL 144 (330)
Q Consensus 81 ~~i~g~~~g~~~t~~li-~~~~iLiD~G~~~~------~---------~l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~ 144 (330)
..|.....|...+.++- +++.+|||+|.... + ..++|+|++||.|.||++|++.+.+..
T Consensus 501 ~~v~~lDVGqG~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~----- 575 (755)
T PRK11539 501 WRVDMLDVGHGLAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAW----- 575 (755)
T ss_pred EEEEEEEccCceEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhC-----
Confidence 45555666654433322 56799999997421 0 126999999999999999999997743
Q ss_pred CCCEEEcCcchHHHHHHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEc-CCC-----CCceEEEEEecc
Q 020181 145 KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT-HHV-----IPSQGYVIYLLR 215 (330)
Q Consensus 145 ~~l~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~-~H~-----~~s~gy~i~~~~ 215 (330)
....||.+.... +......|+.++.+ +++++.+.. .|. ..|+.++++.++
T Consensus 576 ~~~~i~~~~~~~--------------------~~~~~~~g~~~~~~-~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~ 631 (755)
T PRK11539 576 PMAWIRSPLNWA--------------------NHLPCVRGEQWQWQ-GLTFSVHWPLEQSNDAGNNDSCVIRVDDGK 631 (755)
T ss_pred CcceeeccCccc--------------------CcccccCCCeEeEC-CEEEEEEecCcccCCCCCCccEEEEEEECC
Confidence 334577654210 00123467788886 888888844 332 247777887543
No 46
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.49 E-value=3.9e-06 Score=77.32 Aligned_cols=104 Identities=14% Similarity=0.221 Sum_probs=67.8
Q ss_pred CCcEEEEecCCC--Cccc--------c-cccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHHHHHHh
Q 020181 98 PELKCAFDIGRC--PTRA--------I-QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIH 166 (330)
Q Consensus 98 ~~~~iLiD~G~~--~~~~--------l-~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~~~~~~ 166 (330)
++..+++|.|.. -... + +||.+++||.|.||++|++.+++.+.. +.+-++.+........ +.
T Consensus 62 ~~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v---~~~~i~~~~~~~~~~~--~~-- 134 (293)
T COG2333 62 EGKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKV---PELWIYAGSDSTSTFV--LR-- 134 (293)
T ss_pred CCceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCC---CcEEEeCCCCccchhh--hh--
Confidence 566899999983 2221 1 699999999999999999999885422 3444555444322221 11
Q ss_pred hhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEc-CCC-----CCceEEEEEecc
Q 020181 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT-HHV-----IPSQGYVIYLLR 215 (330)
Q Consensus 167 ~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~-~H~-----~~s~gy~i~~~~ 215 (330)
...........|+.+.++ +..++++.- ... -.|+..+++.++
T Consensus 135 ------~~~~~~~~~~~G~~~~~~-~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~ 182 (293)
T COG2333 135 ------DAGIPVRSCKAGDSWQWG-GVVFQVLSPVGGVSDDLNNDSCVLRVTFGG 182 (293)
T ss_pred ------hcCCceeccccCceEEEC-CeEEEEEcCCccccccccCcceEEEEEeCC
Confidence 113445566778889997 988888644 232 247777887654
No 47
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.25 E-value=1.2e-05 Score=70.99 Aligned_cols=156 Identities=18% Similarity=0.237 Sum_probs=86.6
Q ss_pred ceEEEEeCCcEEEEecCCCCcc----------------cc---------cccEEEecCCChhhhCCH-HHHHHHhCcCCC
Q 020181 91 HETCVIIPELKCAFDIGRCPTR----------------AI---------QQNFVFITHGHLDHIGGL-PMYVASRGLYNL 144 (330)
Q Consensus 91 ~~t~~li~~~~iLiD~G~~~~~----------------~l---------~i~~IfiTH~H~DHi~Gl-~~l~~~~~~~~~ 144 (330)
..+.+...+-.||||+|..... ++ +.+-|.|||.|.||.... +.+.... ..
T Consensus 16 mAt~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s---~e 92 (304)
T COG2248 16 MATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEAS---GE 92 (304)
T ss_pred hhheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhc---cc
Confidence 4444555677899999965421 00 579999999999998763 2222111 12
Q ss_pred CCCEEEcCcchH-----HHHHH--HHHHhhhcCCc-ccceEEEEcCCCCEEEeCCcEEEEEEEc-CCCCC--ceEEEEEe
Q 020181 145 KPPTIFVPPSIK-----EDVEK--LFEIHRSLGNV-ELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIP--SQGYVIYL 213 (330)
Q Consensus 145 ~~l~Iy~~~~~~-----~~l~~--~~~~~~~~~~~-~~~~~~~~i~~g~~~~i~~~~~v~~~~~-~H~~~--s~gy~i~~ 213 (330)
....||+.+-+. +.++. .......+... ....+ ..+.+|.+|++| +..|++-+. .|... -+||.+..
T Consensus 93 ~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~-ie~ADgk~f~fG-~t~IefS~pvpHG~eGskLGyVl~v 170 (304)
T COG2248 93 TAKEIYKGKLLLLKHPTENINRSQRRRAYRFLESLKDIARE-IEYADGKTFEFG-GTVIEFSPPVPHGREGSKLGYVLMV 170 (304)
T ss_pred chHHHhcCcEEEecCchhhhCHHHHHHHHHHHHHhhhhcce-eEecCCceEEeC-CEEEEecCCCCCCCcccccceEEEE
Confidence 223344443321 12211 11111111111 11222 345678999998 999998765 89764 47777642
Q ss_pred ccccchhhhcCCChHHHHHHHHcCceeeceeecCeEEEecCCCCccccCchhhhh--cCCCEEEEEEe
Q 020181 214 LRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADA--LRAKILITEAT 279 (330)
Q Consensus 214 ~~~kl~~~~~~~pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~--~~~d~lI~E~t 279 (330)
. |+|. ..+++|+.|+.-- ..++.++++ ++.|++|+.+-
T Consensus 171 ~-------------------------V~dg--~~~i~faSDvqGp-~~~~~l~~i~e~~P~v~ii~GP 210 (304)
T COG2248 171 A-------------------------VTDG--KSSIVFASDVQGP-INDEALEFILEKRPDVLIIGGP 210 (304)
T ss_pred E-------------------------EecC--CeEEEEcccccCC-CccHHHHHHHhcCCCEEEecCC
Confidence 1 1111 1489999999731 112333333 58999999864
No 48
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=98.17 E-value=9.9e-06 Score=67.77 Aligned_cols=97 Identities=19% Similarity=0.197 Sum_probs=64.6
Q ss_pred EEEEe----CCcEEEEecCCCCcc---c------ccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHH
Q 020181 93 TCVII----PELKCAFDIGRCPTR---A------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDV 159 (330)
Q Consensus 93 t~~li----~~~~iLiD~G~~~~~---~------l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l 159 (330)
-.|++ ++..++||+=..... | +++.+-+-||.|+|||.|-..|.. . . +..+..+
T Consensus 22 ytYll~d~~~~~AviIDPV~et~~RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt-~----------~--pg~kSVi 88 (237)
T KOG0814|consen 22 YTYLLGDHKTGKAVIIDPVLETVSRDAQLIKDLGLDLIYALNTHVHADHITGTGLLKT-L----------L--PGCKSVI 88 (237)
T ss_pred EEEEeeeCCCCceEEecchhhcccchHHHHHhcCceeeeeecceeecccccccchHHH-h----------c--ccHHHHh
Confidence 34555 356899998654422 1 367888999999999999877733 1 1 1122222
Q ss_pred HHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEc-CCCCCceEEEEEe
Q 020181 160 EKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIPSQGYVIYL 213 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~-~H~~~s~gy~i~~ 213 (330)
... .+ ...+ ..+++|+.+++| ++.+++..+ +|+.+|+-|...+
T Consensus 89 s~~-------SG--akAD-~~l~~Gd~i~~G-~~~le~ratPGHT~GC~TyV~~d 132 (237)
T KOG0814|consen 89 SSA-------SG--AKAD-LHLEDGDIIEIG-GLKLEVRATPGHTNGCVTYVEHD 132 (237)
T ss_pred hhc-------cc--cccc-cccCCCCEEEEc-cEEEEEecCCCCCCceEEEEecC
Confidence 211 11 1122 235789999998 999999888 8999999999864
No 49
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=97.73 E-value=2.7e-05 Score=54.70 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=34.4
Q ss_pred EEEEe--CCcEEEE-ecCCCCcccc--------cccEEEecCCC-hhhhCC
Q 020181 93 TCVII--PELKCAF-DIGRCPTRAI--------QQNFVFITHGH-LDHIGG 131 (330)
Q Consensus 93 t~~li--~~~~iLi-D~G~~~~~~l--------~i~~IfiTH~H-~DHi~G 131 (330)
+|+++ |..++|| +||++++|.+ ++++||+|+.. ||+++|
T Consensus 13 p~l~l~~d~~rYlFGn~gEGtQR~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFFDSRRYLFGNCGEGTQRACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEeCCceEEeccCCcHHHHHHHHcCCCccccceEEECCCCcccccCC
Confidence 56766 7789999 9999998854 89999999999 999987
No 50
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=97.25 E-value=0.00018 Score=72.31 Aligned_cols=160 Identities=15% Similarity=0.217 Sum_probs=95.5
Q ss_pred ccCeEEEEEEecCceE---EEEe-CCcEEEEecCCCCcccc--------cccEEEecCCChhhhCCHHHHHHHhCcCCC-
Q 020181 78 LEGYTIEGVSIGGHET---CVII-PELKCAFDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNL- 144 (330)
Q Consensus 78 ~~~~~i~g~~~g~~~t---~~li-~~~~iLiD~G~~~~~~l--------~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~- 144 (330)
+...+|.+.+.....+ +++. +..+.++.||+++++.+ +++.||+|-.+|+-++|+|.++-+....+.
T Consensus 48 ~~~~~I~~~~~dt~~s~~~~~~~~~~~~~~~n~Geg~qr~~~ehk~~~sk~~~iflt~~~w~~~GglpGl~ltl~~~G~~ 127 (746)
T KOG2121|consen 48 IRYLQISGSGMDTQDSPLSVYLFDDRKRFIFNCGEGTQRLLTEHKIKLSKLDSIFLTRVCWSSCGGLPGLLLTLADIGEP 127 (746)
T ss_pred EEEEEEecCcccccccchhhhhhcchhhhhhhhhHHHHHHHHHhhhhhhhhhheEeecccHHHhCCCccceeehhhcCCC
Confidence 4445566555333222 2222 45689999999998853 789999999999999999999876665553
Q ss_pred CCCEEEcCcchHHHHHHHHHHhhhcCC----c-ccc---eE-EEEcCCCCEEEeCCcEEEEEEEc--CCCCC--------
Q 020181 145 KPPTIFVPPSIKEDVEKLFEIHRSLGN----V-ELN---LD-LVALDVGETYEMRNDIVVRPFKT--HHVIP-------- 205 (330)
Q Consensus 145 ~~l~Iy~~~~~~~~l~~~~~~~~~~~~----~-~~~---~~-~~~i~~g~~~~i~~~~~v~~~~~--~H~~~-------- 205 (330)
.+..+|||+.+...+..+......... . ... ++ ...+++...++.+ -.++.++.+ .|.+.
T Consensus 128 g~~~l~gP~~l~~~l~~mr~f~~r~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~-v~k~s~~~l~~~~~~~~sg~~~~~ 206 (746)
T KOG2121|consen 128 GPVVLHGPSDLNYILSAMRYFVPRSGMVLTLSIDPSAELYNLSEPVRPCVLFSDE-VLKISAINLSPPESPTDSGVKREL 206 (746)
T ss_pred CcccccCchhHHHHHHHHHHhhccCCceeecccCCccchhhcccCcccccccCcc-chhhheeecCCcccCCccCChhhh
Confidence 378899999998888776433221110 0 000 00 0111111222221 344555555 23322
Q ss_pred ceEEEEEec--cccchh---hhcCCC-hHHHHHHHHcCce
Q 020181 206 SQGYVIYLL--RKKLKK---QYIHLK-GKQIEKLKKSGVE 239 (330)
Q Consensus 206 s~gy~i~~~--~~kl~~---~~~~~p-g~~~~~L~~~G~~ 239 (330)
...|.++-. .++++. ..+|+| ||.+++|+. |..
T Consensus 207 ~~~y~~~~~~~~G~f~~~kA~~lGvp~Gp~~~~L~~-G~~ 245 (746)
T KOG2121|consen 207 VVNYICQLHPIRGKFDVEKAKELGVPKGPLIGKLKS-GES 245 (746)
T ss_pred eeEEEEecccCCCcccHHHHHHhCCCCCcchhhhcC-CCc
Confidence 345666543 336654 488995 999999987 543
No 51
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=96.67 E-value=0.021 Score=55.50 Aligned_cols=95 Identities=14% Similarity=0.255 Sum_probs=59.6
Q ss_pred cccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHH----HHHHHHHhhhcCC---------c------cc-
Q 020181 115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKED----VEKLFEIHRSLGN---------V------EL- 174 (330)
Q Consensus 115 ~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~----l~~~~~~~~~~~~---------~------~~- 174 (330)
.||.|+||..|. ..|||.+-+.-+|.+ +||+++.+.+. ++++.+....++. . ..
T Consensus 96 tiDvILISNy~~--mlgLPfiTentGF~g----kiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpsp 169 (653)
T KOG1138|consen 96 TIDVILISNYMG--MLGLPFITENTGFFG----KIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSP 169 (653)
T ss_pred ceeEEEEcchhh--hcccceeecCCCcee----EEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCC
Confidence 489999998875 678888866444432 59999988654 2333322211110 0 00
Q ss_pred ------ce----------------EEEEcCCCCEEEeCCcEEEEEEEcCCCCCceEEEEEecc
Q 020181 175 ------NL----------------DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR 215 (330)
Q Consensus 175 ------~~----------------~~~~i~~g~~~~i~~~~~v~~~~~~H~~~s~gy~i~~~~ 215 (330)
.. +++.+...+.+++...+.|+++..+|..|+.-|.|.+..
T Consensus 170 lk~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsnW~I~t~n 232 (653)
T KOG1138|consen 170 LKKAVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSNWLINTPN 232 (653)
T ss_pred chhhccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccceEEecCC
Confidence 00 122333456777644688999999999999999998764
No 52
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=96.55 E-value=0.003 Score=53.57 Aligned_cols=91 Identities=15% Similarity=0.121 Sum_probs=52.8
Q ss_pred CCcEEEEecCCCCccc-------ccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHHHHHHhhhcC
Q 020181 98 PELKCAFDIGRCPTRA-------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLG 170 (330)
Q Consensus 98 ~~~~iLiD~G~~~~~~-------l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~~~~~~~~~~ 170 (330)
++.+||||+-+-.... -.+++|++|| .||+.....+.+.. ...||+|.+.++.+ +
T Consensus 31 p~GnilIDP~~ls~~~~~~l~a~ggv~~IvLTn--~dHvR~A~~ya~~~------~a~i~~p~~d~~~~----------p 92 (199)
T PF14597_consen 31 PEGNILIDPPPLSAHDWKHLDALGGVAWIVLTN--RDHVRAAEDYAEQT------GAKIYGPAADAAQF----------P 92 (199)
T ss_dssp TT--EEES-----HHHHHHHHHTT--SEEE-SS--GGG-TTHHHHHHHS--------EEEEEGGGCCC-----------S
T ss_pred CCCCEEecCccccHHHHHHHHhcCCceEEEEeC--ChhHhHHHHHHHHh------CCeeeccHHHHhhC----------C
Confidence 6779999998754321 2699999996 69999999887643 23599998765211 0
Q ss_pred CcccceEEEEcCCCCEEEeCCcEEEEEEEcCCCCCceEEEEE
Q 020181 171 NVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY 212 (330)
Q Consensus 171 ~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~~H~~~s~gy~i~ 212 (330)
... -+.+.+|+.+. +|++|..++-.|+++.+.+.++
T Consensus 93 ---~~~-D~~l~dge~i~--~g~~vi~l~G~ktpGE~ALlle 128 (199)
T PF14597_consen 93 ---LAC-DRWLADGEEIV--PGLWVIHLPGSKTPGELALLLE 128 (199)
T ss_dssp ---S---SEEE-TT-BSS--TTEEEEEE-SSSSTTEEEEEET
T ss_pred ---CCC-ccccccCCCcc--CceEEEEcCCCCCCceeEEEec
Confidence 111 13456777443 4888888887899999999986
No 53
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=96.38 E-value=0.056 Score=48.30 Aligned_cols=140 Identities=15% Similarity=0.168 Sum_probs=78.1
Q ss_pred cccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHHHHHHhhhcCCcccceEEEEcCCCCE---EEeCC
Q 020181 115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGET---YEMRN 191 (330)
Q Consensus 115 ~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~g~~---~~i~~ 191 (330)
++|-+.++|.|.||... ..+... .+..++.-++|...+..+.. ..... +.++..+++ +.=++
T Consensus 132 ~~d~~~vsh~h~dhld~-~~~~~~---~~~~~~~wfvp~g~k~~m~~--------~gc~~---v~el~wwe~~~~vkn~~ 196 (343)
T KOG3798|consen 132 DLDFAVVSHDHYDHLDA-DAVKKI---TDRNPQIWFVPLGMKKWMEG--------DGSST---VTELNWGESSEFVKNGK 196 (343)
T ss_pred CCceeccccccccccch-HHHHhh---hccCccceeehhhhhheecC--------CCCCc---eeEeeccchhceecCCc
Confidence 79999999999999643 333231 12334436676655433321 11111 222233322 22123
Q ss_pred cEEEEEEEcCCCCC-c---------eEEEEEeccccchhhhcCCChHHHHHHHHcCceeeceeecCeEEEecCCCCcc-c
Q 020181 192 DIVVRPFKTHHVIP-S---------QGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF-M 260 (330)
Q Consensus 192 ~~~v~~~~~~H~~~-s---------~gy~i~~~~~kl~~~~~~~pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~~~~-~ 260 (330)
-++|.+.|+.|-.+ + .+|.+... + .+++|.|||+++. .
T Consensus 197 ~~ti~~tPaqHw~~R~L~D~Nk~LW~sw~v~g~----------------------~---------nrfffaGDTGyc~~~ 245 (343)
T KOG3798|consen 197 TYTIWCLPAQHWGQRGLFDRNKRLWSSWAVIGE----------------------N---------NRFFFAGDTGYCDGE 245 (343)
T ss_pred EEEEEEcchhhhcccccccCCcceeeeeEEecC----------------------C---------ceEEecCCCCcccHH
Confidence 57788899999422 1 23333321 1 4799999999965 2
Q ss_pred cCchhhhhcCCCEEEEEEe-cCCCcccHHHHHhcCCCCchhHHHHH
Q 020181 261 LNPRNADALRAKILITEAT-FLDDEMSIEHAQQHGHTHLSEDIRQA 305 (330)
Q Consensus 261 ~~~~~~~~~~~d~lI~E~t-~~~~~~~~~~a~~~~H~t~~~~~~~~ 305 (330)
..+.-+.+-.+|+..+-+. |-.+= -.+..|..++|++++.
T Consensus 246 F~~IgerfGpfdLAaiPiGaYePrW-----fmK~~HInPeEav~Ih 286 (343)
T KOG3798|consen 246 FKKIGERFGPFDLAAIPIGAYEPRW-----FMKSQHINPEEAVEIH 286 (343)
T ss_pred HHHHHHhcCCcceeeccccccCchh-----hcccccCCHHHHHHHH
Confidence 2222223345888777664 32222 2456799998888876
No 54
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.30 E-value=0.018 Score=55.81 Aligned_cols=60 Identities=23% Similarity=0.245 Sum_probs=42.4
Q ss_pred CCcEEEEecCCCC---cc----------cccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHH
Q 020181 98 PELKCAFDIGRCP---TR----------AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKED 158 (330)
Q Consensus 98 ~~~~iLiD~G~~~---~~----------~l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~ 158 (330)
+...|+||+=... +. +..|.+|+.||+|.||++|+..+...-.. ....+.|.+|.+-++.
T Consensus 134 dtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV-~sGkV~iiAP~GFme~ 206 (655)
T COG2015 134 DTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADV-KSGKVQIIAPAGFMEE 206 (655)
T ss_pred CcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHc-ccCceeEecchhHHHH
Confidence 3457999975322 11 23799999999999999999888764322 2345679999987654
No 55
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=86.28 E-value=0.93 Score=45.74 Aligned_cols=116 Identities=19% Similarity=0.180 Sum_probs=77.9
Q ss_pred ceEEEEEeccccchhhhcC-C--ChHHHHHHHHcCce--eeceeecCeEEEecCCCCccccCchhh-hhcCCCEEEEEEe
Q 020181 206 SQGYVIYLLRKKLKKQYIH-L--KGKQIEKLKKSGVE--ITDIILSPEVAFTGDTTSEFMLNPRNA-DALRAKILITEAT 279 (330)
Q Consensus 206 s~gy~i~~~~~kl~~~~~~-~--pg~~~~~L~~~G~~--i~~~~~~~~i~y~gDt~~~~~~~~~~~-~~~~~d~lI~E~t 279 (330)
..|+.+.++|.|++..... - +..+++++.++|++ ++|++ ++.--|.|.++....+.+. .+++++-.|+=+|
T Consensus 157 p~G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsT---na~~pg~t~SE~~v~~~l~~i~~~a~grVIv~t 233 (555)
T COG0595 157 PEGNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDST---NAENPGFTPSESEVGENLEDIIRNAKGRVIVTT 233 (555)
T ss_pred CCccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCc---ccCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3577888999999887543 3 57788899888864 45553 2333445555433333332 4578998999999
Q ss_pred cCCCccc-------------------------HHHHHhcCCCCchhHHHHHHHhcccccCCceEEEeccc
Q 020181 280 FLDDEMS-------------------------IEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLTEGF 324 (330)
Q Consensus 280 ~~~~~~~-------------------------~~~a~~~~H~t~~~~~~~~l~~~~~~~~~~~~i~ltHf 324 (330)
|.++... ...|+.-|.+...+.......+++...+++..|+.|+.
T Consensus 234 faSni~Ri~~i~~~A~~~gR~vvv~GrSm~~~~~~a~~lg~~~~~~~~~i~~~~~~~~~~~~~lii~TG~ 303 (555)
T COG0595 234 FASNIERIQTIIDAAEKLGRKVVVTGRSMERLIAIARRLGYLKLPDESFIEIREVKRYPDEEVLIICTGS 303 (555)
T ss_pred chhhHHHHHHHHHHHHHcCCeEEEEcHhHHHHHHHHhhcccccCccccccCHHHhccccccceEEEEeCC
Confidence 9998541 23466677777765556666778888778888888875
No 56
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=85.04 E-value=0.68 Score=47.21 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=35.8
Q ss_pred EEEEeCCcEEEEecCCCCc-------ccc-cccEEEecCCChhhhCCHHHHHHH
Q 020181 93 TCVIIPELKCAFDIGRCPT-------RAI-QQNFVFITHGHLDHIGGLPMYVAS 138 (330)
Q Consensus 93 t~~li~~~~iLiD~G~~~~-------~~l-~i~~IfiTH~H~DHi~Gl~~l~~~ 138 (330)
+.+.++|.+||+|-|..-. +.+ +||+||+||--.|...|+..|++.
T Consensus 51 ALFavnGf~iLv~GgserKS~fwklVrHldrVdaVLLthpg~dNLpginsllqr 104 (934)
T KOG3592|consen 51 ALFAVNGFNILVNGGSERKSCFWKLVRHLDRVDAVLLTHPGADNLPGINSLLQR 104 (934)
T ss_pred eeEeecceEEeecCCcccccchHHHHHHHhhhhhhhhcccccCccccchHHHHH
Confidence 3445588889999886521 223 899999999999999999998763
No 57
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.80 E-value=3.2 Score=38.09 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=29.5
Q ss_pred CCcEEEEecCCCCccc-----ccccEEEecCCChhhhCCHHHH
Q 020181 98 PELKCAFDIGRCPTRA-----IQQNFVFITHGHLDHIGGLPMY 135 (330)
Q Consensus 98 ~~~~iLiD~G~~~~~~-----l~i~~IfiTH~H~DHi~Gl~~l 135 (330)
++..+++|.|-+.... -+|+.+.+||.|.+|++++..+
T Consensus 103 ~~~v~v~~~gls~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f 145 (302)
T KOG4736|consen 103 GGDVVVVDTGLSVLAKEGVTLDQIDSVVITHKSPGHLGNNNLF 145 (302)
T ss_pred CCceEEEecCCchhhhcCcChhhcceeEEeccCcccccccccc
Confidence 3457999999873221 2899999999999999987544
No 58
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=22.52 E-value=62 Score=28.45 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=13.9
Q ss_pred cchhhhhhhhhhHHHHHHHHhh
Q 020181 48 AGFLSSISRAIDEEEEYRKARA 69 (330)
Q Consensus 48 tG~~~giP~~~c~c~~c~~ar~ 69 (330)
+..+.++|++.| .+|+.+-+
T Consensus 72 s~~~g~~PmvtC--RVCq~~i~ 91 (275)
T KOG4684|consen 72 SAMLGQFPMVTC--RVCQVAIS 91 (275)
T ss_pred ccccCCCceEee--hhhhHHhc
Confidence 335678898777 77888743
No 59
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=22.13 E-value=57 Score=28.26 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=17.2
Q ss_pred ChHHHHHHHHcCceeeceeecCeEEEecCCC
Q 020181 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTT 256 (330)
Q Consensus 226 pg~~~~~L~~~G~~i~~~~~~~~i~y~gDt~ 256 (330)
+.+.|.+||++| ..++|.||+.
T Consensus 42 ~l~~i~~lk~kg---------~~la~vGdvv 63 (204)
T PF06434_consen 42 PLEQIEELKEKG---------HPLAYVGDVV 63 (204)
T ss_dssp SHHHHHHHHTTS---------S-EEEEEEEE
T ss_pred HHHHHHHHHHcC---------CcEEEecCcc
Confidence 578999999999 4688888853
Done!