Query 020182
Match_columns 330
No_of_seqs 203 out of 1532
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 07:41:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1432 Predicted DNA repair e 100.0 9.8E-58 2.1E-62 412.2 26.1 293 12-326 82-377 (379)
2 cd07395 MPP_CSTP1 Homo sapiens 100.0 7E-28 1.5E-32 220.4 24.8 219 12-292 29-253 (262)
3 PRK11148 cyclic 3',5'-adenosin 100.0 8.9E-28 1.9E-32 221.3 24.8 218 16-314 39-265 (275)
4 cd07383 MPP_Dcr2 Saccharomyces 100.0 2.8E-28 6.1E-33 214.2 18.1 170 16-276 27-199 (199)
5 cd07396 MPP_Nbla03831 Homo sap 99.9 1.5E-24 3.2E-29 199.0 24.3 211 15-291 25-261 (267)
6 cd07402 MPP_GpdQ Enterobacter 99.9 3.5E-23 7.6E-28 186.5 22.5 207 14-291 22-237 (240)
7 cd00839 MPP_PAPs purple acid p 99.9 8.9E-23 1.9E-27 189.5 21.5 245 16-325 21-294 (294)
8 cd07378 MPP_ACP5 Homo sapiens 99.9 4.9E-22 1.1E-26 183.0 21.9 221 17-291 19-265 (277)
9 PLN02533 probable purple acid 99.9 7.1E-22 1.5E-26 191.9 22.9 244 21-328 156-421 (427)
10 TIGR03767 P_acnes_RR metalloph 99.9 1.4E-19 3.1E-24 173.9 23.1 133 120-293 290-433 (496)
11 cd07399 MPP_YvnB Bacillus subt 99.8 8.2E-20 1.8E-24 162.3 19.2 173 16-292 21-202 (214)
12 cd07401 MPP_TMEM62_N Homo sapi 99.8 9.5E-20 2E-24 166.2 17.3 180 20-255 23-212 (256)
13 cd00842 MPP_ASMase acid sphing 99.8 2.8E-19 6E-24 166.4 17.0 193 16-257 52-265 (296)
14 cd08163 MPP_Cdc1 Saccharomyces 99.8 1E-17 2.2E-22 152.5 19.5 174 28-257 43-230 (257)
15 PTZ00422 glideosome-associated 99.8 2.7E-17 5.8E-22 156.0 22.3 231 19-291 46-306 (394)
16 KOG1378 Purple acid phosphatas 99.8 1.7E-17 3.8E-22 157.7 20.7 234 30-327 174-439 (452)
17 cd07393 MPP_DR1119 Deinococcus 99.8 2.2E-17 4.7E-22 148.5 20.5 189 17-272 26-228 (232)
18 TIGR03768 RPA4764 metallophosp 99.7 4.6E-16 1E-20 148.5 20.1 134 142-293 305-452 (492)
19 COG1409 Icc Predicted phosphoh 99.7 1.2E-15 2.7E-20 140.7 21.5 193 15-272 18-218 (301)
20 TIGR03729 acc_ester putative p 99.7 2.1E-16 4.6E-21 142.7 15.2 188 18-266 20-234 (239)
21 cd07392 MPP_PAE1087 Pyrobaculu 99.7 1.2E-15 2.5E-20 131.9 16.0 168 24-264 17-184 (188)
22 KOG2679 Purple (tartrate-resis 99.6 1.2E-14 2.5E-19 128.9 12.4 193 27-272 72-275 (336)
23 PF00149 Metallophos: Calcineu 99.5 2.4E-14 5.2E-19 119.3 9.3 60 19-78 20-79 (200)
24 cd00840 MPP_Mre11_N Mre11 nucl 99.4 2.2E-12 4.8E-17 114.4 14.6 68 12-79 23-91 (223)
25 cd07400 MPP_YydB Bacillus subt 99.4 3.4E-12 7.4E-17 105.9 12.3 56 19-75 24-79 (144)
26 cd07404 MPP_MS158 Microscilla 99.4 2.3E-12 5.1E-17 109.6 11.5 64 194-268 97-163 (166)
27 cd07388 MPP_Tt1561 Thermus the 99.4 3.6E-11 7.8E-16 107.1 19.4 168 16-251 17-189 (224)
28 cd07385 MPP_YkuE_C Bacillus su 99.1 8E-10 1.7E-14 98.3 12.6 60 17-79 19-78 (223)
29 PRK11340 phosphodiesterase Yae 99.1 1.9E-09 4.2E-14 99.1 15.3 60 17-78 67-126 (271)
30 KOG3770 Acid sphingomyelinase 99.0 9.4E-09 2E-13 100.9 16.3 242 15-310 193-459 (577)
31 TIGR00583 mre11 DNA repair pro 99.0 1.7E-08 3.6E-13 97.5 17.9 62 16-79 28-125 (405)
32 cd08165 MPP_MPPE1 human MPPE1 99.0 6.3E-09 1.4E-13 87.9 12.8 56 21-77 29-89 (156)
33 PF14582 Metallophos_3: Metall 99.0 2.3E-09 5E-14 93.6 9.8 63 16-78 18-103 (255)
34 PF12850 Metallophos_2: Calcin 98.9 1.3E-09 2.8E-14 91.0 5.5 74 194-290 81-154 (156)
35 cd07397 MPP_DevT Myxococcus xa 98.9 3E-07 6.6E-12 82.4 19.2 47 24-79 19-65 (238)
36 cd07406 MPP_CG11883_N Drosophi 98.9 1.5E-07 3.3E-12 85.9 16.8 197 17-268 24-221 (257)
37 PHA02546 47 endonuclease subun 98.8 4.7E-07 1E-11 86.0 19.4 62 16-77 25-89 (340)
38 PRK10966 exonuclease subunit S 98.8 5.8E-07 1.3E-11 87.3 20.2 63 16-78 25-88 (407)
39 cd07410 MPP_CpdB_N Escherichia 98.8 6.5E-07 1.4E-11 82.6 19.2 73 17-93 30-109 (277)
40 cd00838 MPP_superfamily metall 98.8 1E-07 2.2E-12 76.0 11.0 50 24-75 20-69 (131)
41 COG1768 Predicted phosphohydro 98.8 2.1E-07 4.6E-12 78.3 12.7 194 7-270 21-220 (230)
42 cd08166 MPP_Cdc1_like_1 unchar 98.7 7.4E-08 1.6E-12 83.7 9.9 63 16-79 28-95 (195)
43 COG2129 Predicted phosphoester 98.7 2.1E-06 4.5E-11 75.4 18.7 193 18-290 18-215 (226)
44 PRK05340 UDP-2,3-diacylglucosa 98.7 1.2E-07 2.7E-12 85.6 9.6 50 28-77 30-83 (241)
45 cd07379 MPP_239FB Homo sapiens 98.7 5.6E-07 1.2E-11 73.8 12.6 45 28-76 17-62 (135)
46 TIGR00040 yfcE phosphoesterase 98.6 2E-06 4.4E-11 72.5 15.9 55 232-290 97-151 (158)
47 cd00845 MPP_UshA_N_like Escher 98.6 3.8E-06 8.3E-11 76.1 17.7 74 16-93 22-96 (252)
48 cd07384 MPP_Cdc1_like Saccharo 98.6 1.6E-07 3.5E-12 80.5 7.2 68 10-77 25-100 (171)
49 cd00841 MPP_YfcE Escherichia c 98.5 2.7E-06 5.9E-11 71.2 13.4 49 239-291 100-148 (155)
50 cd07412 MPP_YhcR_N Bacillus su 98.5 1.4E-05 2.9E-10 74.3 18.6 71 17-90 28-99 (288)
51 cd07411 MPP_SoxB_N Thermus the 98.5 1.9E-05 4.2E-10 72.3 19.3 195 17-267 36-235 (264)
52 COG0420 SbcD DNA repair exonuc 98.5 3.7E-07 8.1E-12 88.3 7.9 67 14-80 24-91 (390)
53 TIGR00619 sbcd exonuclease Sbc 98.5 5.1E-07 1.1E-11 82.2 8.1 64 16-79 25-90 (253)
54 cd07408 MPP_SA0022_N Staphyloc 98.5 1.9E-05 4.1E-10 72.1 18.3 71 19-93 26-96 (257)
55 COG1408 Predicted phosphohydro 98.4 1.3E-06 2.8E-11 80.7 9.8 63 18-82 61-123 (284)
56 cd07394 MPP_Vps29 Homo sapiens 98.4 2.7E-05 5.9E-10 67.1 17.0 72 232-314 97-170 (178)
57 PF09423 PhoD: PhoD-like phosp 98.4 9.1E-06 2E-10 80.2 15.8 208 2-253 110-377 (453)
58 cd07391 MPP_PF1019 Pyrococcus 98.4 9.9E-07 2.2E-11 75.6 7.5 66 11-77 22-88 (172)
59 cd07409 MPP_CD73_N CD73 ecto-5 98.4 3.9E-05 8.5E-10 71.0 18.6 183 17-253 35-218 (281)
60 COG2908 Uncharacterized protei 98.4 7.4E-07 1.6E-11 78.9 6.3 60 18-77 15-80 (237)
61 cd07398 MPP_YbbF-LpxH Escheric 98.2 4.1E-06 8.9E-11 74.0 8.4 49 28-77 28-82 (217)
62 PRK09418 bifunctional 2',3'-cy 98.1 7.5E-05 1.6E-09 77.8 15.6 214 19-268 71-303 (780)
63 cd07407 MPP_YHR202W_N Saccharo 98.1 0.00038 8.3E-09 64.4 18.1 53 25-78 44-98 (282)
64 TIGR00024 SbcD_rel_arch putati 98.0 1.5E-05 3.3E-10 71.2 7.7 65 10-77 38-102 (225)
65 PRK09419 bifunctional 2',3'-cy 98.0 0.00028 6.1E-09 77.4 19.0 201 18-267 678-895 (1163)
66 TIGR01530 nadN NAD pyrophospha 98.0 0.00025 5.4E-09 71.7 17.2 72 17-92 35-107 (550)
67 cd07405 MPP_UshA_N Escherichia 98.0 0.00078 1.7E-08 62.5 19.1 69 19-91 26-99 (285)
68 TIGR01854 lipid_A_lpxH UDP-2,3 98.0 1.6E-05 3.4E-10 71.4 7.5 48 30-77 30-81 (231)
69 PRK11907 bifunctional 2',3'-cy 98.0 0.00024 5.1E-09 74.4 16.2 194 18-252 146-353 (814)
70 COG0737 UshA 5'-nucleotidase/2 97.9 0.00032 6.9E-09 70.5 15.9 204 18-270 56-268 (517)
71 PRK09420 cpdB bifunctional 2', 97.9 0.00029 6.3E-09 72.5 15.3 194 18-253 56-263 (649)
72 cd07382 MPP_DR1281 Deinococcus 97.9 0.005 1.1E-07 56.1 20.8 66 18-93 16-82 (255)
73 PRK09419 bifunctional 2',3'-cy 97.9 0.00083 1.8E-08 73.8 18.6 75 17-94 71-154 (1163)
74 KOG3662 Cell division control 97.8 8.7E-05 1.9E-09 71.0 9.5 52 26-79 89-146 (410)
75 PRK09558 ushA bifunctional UDP 97.8 0.001 2.2E-08 67.4 17.8 69 20-92 61-134 (551)
76 TIGR01390 CycNucDiestase 2',3' 97.8 0.00042 9.1E-09 71.1 15.0 73 18-94 33-114 (626)
77 cd07390 MPP_AQ1575 Aquifex aeo 97.8 5.8E-05 1.3E-09 64.3 6.8 52 19-77 29-82 (168)
78 PRK09453 phosphodiesterase; Pr 97.8 5.4E-05 1.2E-09 65.3 6.1 60 18-77 15-76 (182)
79 COG3540 PhoD Phosphodiesterase 97.8 0.00021 4.6E-09 68.9 10.4 190 22-252 160-417 (522)
80 cd08164 MPP_Ted1 Saccharomyces 97.7 8.8E-05 1.9E-09 64.5 6.9 59 20-78 33-112 (193)
81 cd00844 MPP_Dbr1_N Dbr1 RNA la 97.7 0.0019 4.1E-08 59.1 15.7 49 29-77 27-86 (262)
82 cd08162 MPP_PhoA_N Synechococc 97.7 0.004 8.6E-08 58.6 17.5 69 20-91 23-103 (313)
83 cd07386 MPP_DNA_pol_II_small_a 97.5 0.0002 4.4E-09 64.7 5.9 59 19-78 19-95 (243)
84 cd07403 MPP_TTHA0053 Thermus t 97.4 0.0005 1.1E-08 56.0 7.2 47 197-255 59-105 (129)
85 TIGR00282 metallophosphoestera 97.4 0.025 5.5E-07 51.8 18.4 179 17-267 16-197 (266)
86 PHA02239 putative protein phos 97.3 0.00056 1.2E-08 61.6 6.9 56 18-76 15-72 (235)
87 COG0622 Predicted phosphoester 97.3 0.017 3.6E-07 49.5 15.1 57 231-291 99-155 (172)
88 cd07425 MPP_Shelphs Shewanella 97.3 0.00061 1.3E-08 60.2 6.3 61 17-77 11-80 (208)
89 KOG2310 DNA repair exonuclease 97.3 0.049 1.1E-06 53.7 19.5 65 16-82 38-138 (646)
90 PRK00166 apaH diadenosine tetr 97.2 0.00067 1.4E-08 62.5 5.9 54 17-76 14-68 (275)
91 PF13277 YmdB: YmdB-like prote 97.1 0.035 7.7E-07 50.0 15.7 176 18-267 14-192 (253)
92 cd07422 MPP_ApaH Escherichia c 97.1 0.0011 2.4E-08 60.5 5.8 56 16-77 11-67 (257)
93 COG1407 Predicted ICC-like pho 96.9 0.0034 7.4E-08 56.0 7.5 60 17-78 50-111 (235)
94 PRK04036 DNA polymerase II sma 96.9 0.0023 4.9E-08 64.1 7.1 60 17-77 262-343 (504)
95 cd00144 MPP_PPP_family phospho 96.8 0.0019 4E-08 57.3 5.3 58 17-77 11-68 (225)
96 cd07413 MPP_PA3087 Pseudomonas 96.7 0.0034 7.4E-08 56.0 5.9 56 17-76 12-75 (222)
97 cd07381 MPP_CapA CapA and rela 96.6 0.11 2.4E-06 46.7 15.1 75 166-267 158-233 (239)
98 TIGR00668 apaH bis(5'-nucleosy 96.6 0.0044 9.5E-08 57.0 5.8 55 16-76 13-68 (279)
99 cd07421 MPP_Rhilphs Rhilph pho 96.4 0.01 2.3E-07 54.8 7.0 57 17-76 15-79 (304)
100 cd07424 MPP_PrpA_PrpB PrpA and 96.3 0.0068 1.5E-07 53.4 5.5 53 17-77 14-67 (207)
101 PRK11439 pphA serine/threonine 96.3 0.0063 1.4E-07 54.1 5.0 53 16-76 29-82 (218)
102 smart00854 PGA_cap Bacterial c 96.2 0.19 4.1E-06 45.2 14.2 72 169-267 159-231 (239)
103 cd07403 MPP_TTHA0053 Thermus t 96.1 0.01 2.2E-07 48.2 4.8 37 28-75 20-56 (129)
104 PRK13625 bis(5'-nucleosyl)-tet 95.9 0.017 3.8E-07 52.2 5.9 42 31-76 37-78 (245)
105 cd07423 MPP_PrpE Bacillus subt 95.9 0.019 4E-07 51.6 6.0 42 31-76 38-79 (234)
106 PRK09968 serine/threonine-spec 95.8 0.014 3.1E-07 51.9 5.0 52 17-76 28-80 (218)
107 cd07389 MPP_PhoD Bacillus subt 95.2 0.045 9.7E-07 48.6 6.1 75 2-80 4-105 (228)
108 PF09587 PGA_cap: Bacterial ca 94.3 2.5 5.5E-05 38.1 15.3 77 165-267 166-242 (250)
109 cd07380 MPP_CWF19_N Schizosacc 94.3 0.11 2.4E-06 43.4 5.8 57 16-75 11-68 (150)
110 PF04042 DNA_pol_E_B: DNA poly 94.3 0.022 4.7E-07 50.0 1.5 76 2-79 4-93 (209)
111 COG1692 Calcineurin-like phosp 93.8 4.8 0.00011 36.2 17.2 58 27-94 27-84 (266)
112 cd07387 MPP_PolD2_C PolD2 (DNA 93.7 0.14 3E-06 46.8 5.7 47 32-79 44-109 (257)
113 smart00156 PP2Ac Protein phosp 93.4 0.2 4.3E-06 46.1 6.3 59 17-77 41-99 (271)
114 COG5555 Cytolysin, a secreted 93.1 0.48 1E-05 43.4 7.9 76 168-254 254-335 (392)
115 KOG4419 5' nucleotidase [Nucle 93.0 0.63 1.4E-05 46.7 9.3 60 167-257 212-273 (602)
116 COG4186 Predicted phosphoester 92.8 0.4 8.7E-06 40.0 6.4 54 24-83 38-92 (186)
117 cd07416 MPP_PP2B PP2B, metallo 92.6 0.32 6.9E-06 45.6 6.5 58 18-77 57-114 (305)
118 PTZ00244 serine/threonine-prot 91.5 0.34 7.3E-06 45.2 5.2 58 18-77 66-123 (294)
119 cd07415 MPP_PP2A_PP4_PP6 PP2A, 91.1 0.46 1E-05 44.0 5.7 57 19-77 57-113 (285)
120 cd07418 MPP_PP7 PP7, metalloph 91.1 0.48 1.1E-05 45.6 5.9 59 17-77 79-138 (377)
121 cd07414 MPP_PP1_PPKL PP1, PPKL 90.8 0.46 1E-05 44.2 5.5 58 18-77 64-121 (293)
122 PTZ00480 serine/threonine-prot 89.8 0.57 1.2E-05 44.1 5.1 58 18-77 73-130 (320)
123 cd07420 MPP_RdgC Drosophila me 89.7 0.7 1.5E-05 43.6 5.6 45 32-78 80-124 (321)
124 PTZ00239 serine/threonine prot 89.4 0.8 1.7E-05 42.9 5.8 58 18-77 57-114 (303)
125 COG1311 HYS2 Archaeal DNA poly 87.6 0.56 1.2E-05 46.0 3.5 60 18-78 245-322 (481)
126 cd07419 MPP_Bsu1_C Arabidopsis 87.3 1.4 3.1E-05 41.3 6.1 59 229-291 241-300 (311)
127 cd07417 MPP_PP5_C PP5, C-termi 87.0 1.1 2.4E-05 42.2 5.2 44 32-77 89-132 (316)
128 cd07384 MPP_Cdc1_like Saccharo 83.5 1.3 2.8E-05 37.8 3.5 15 239-253 132-146 (171)
129 KOG3325 Membrane coat complex 82.9 7.7 0.00017 32.3 7.5 78 230-320 96-177 (183)
130 cd08166 MPP_Cdc1_like_1 unchar 81.4 1.8 3.9E-05 37.8 3.6 38 197-255 112-149 (195)
131 TIGR01854 lipid_A_lpxH UDP-2,3 79.6 2.5 5.4E-05 37.7 4.1 28 229-256 173-200 (231)
132 KOG2863 RNA lariat debranching 77.2 4.3 9.4E-05 38.5 4.9 57 29-94 29-96 (456)
133 COG2875 CobM Precorrin-4 methy 76.2 3.2 7E-05 37.0 3.6 62 5-73 47-112 (254)
134 cd08164 MPP_Ted1 Saccharomyces 70.1 3.1 6.7E-05 36.3 2.0 13 241-253 144-156 (193)
135 TIGR01319 glmL_fam conserved h 68.6 12 0.00027 36.9 6.0 51 23-77 113-163 (463)
136 PRK09453 phosphodiesterase; Pr 66.5 11 0.00023 32.1 4.8 32 240-272 117-148 (182)
137 COG2047 Uncharacterized protei 62.9 18 0.00038 32.2 5.3 62 29-91 82-152 (258)
138 PF02350 Epimerase_2: UDP-N-ac 57.3 29 0.00062 33.0 6.3 61 16-86 53-116 (346)
139 cd04502 SGNH_hydrolase_like_7 56.8 33 0.00071 28.4 5.9 53 18-70 38-95 (171)
140 cd04501 SGNH_hydrolase_like_4 54.7 48 0.001 27.7 6.7 11 67-77 63-73 (183)
141 PF06874 FBPase_2: Firmicute f 52.9 17 0.00036 37.2 3.9 51 20-77 174-224 (640)
142 cd01828 sialate_O-acetylestera 51.9 53 0.0011 27.0 6.4 43 28-70 46-93 (169)
143 COG3855 Fbp Uncharacterized pr 51.1 21 0.00046 35.2 4.1 53 19-78 179-231 (648)
144 PF13941 MutL: MutL protein 50.2 36 0.00078 33.8 5.7 53 21-77 115-167 (457)
145 cd02067 B12-binding B12 bindin 48.8 48 0.001 25.8 5.4 52 20-77 40-93 (119)
146 KOG0372 Serine/threonine speci 47.1 25 0.00054 31.9 3.7 43 34-78 73-115 (303)
147 KOG0373 Serine/threonine speci 46.1 27 0.00058 31.1 3.7 42 34-77 76-117 (306)
148 cd07425 MPP_Shelphs Shewanella 46.1 26 0.00056 30.7 3.7 24 232-255 158-181 (208)
149 PRK13600 putative ribosomal pr 46.0 76 0.0016 23.7 5.6 44 20-71 19-62 (84)
150 TIGR03568 NeuC_NnaA UDP-N-acet 44.6 76 0.0016 30.3 7.0 49 17-75 80-129 (365)
151 TIGR01769 GGGP geranylgeranylg 43.9 76 0.0016 27.9 6.3 55 17-77 11-66 (205)
152 KOG0374 Serine/threonine speci 43.9 12 0.00026 35.4 1.4 46 31-78 86-132 (331)
153 cd01841 NnaC_like NnaC (CMP-Ne 43.1 87 0.0019 25.8 6.5 53 16-68 37-94 (174)
154 KOG0371 Serine/threonine prote 42.8 24 0.00051 32.2 2.9 42 34-77 90-131 (319)
155 PRK09968 serine/threonine-spec 40.8 31 0.00068 30.4 3.5 50 33-89 16-66 (218)
156 PRK10380 hypothetical protein; 39.5 62 0.0014 22.2 3.8 26 278-310 5-30 (63)
157 cd01833 XynB_like SGNH_hydrola 37.1 84 0.0018 25.4 5.3 54 17-70 27-85 (157)
158 cd01836 FeeA_FeeB_like SGNH_hy 37.0 96 0.0021 26.0 5.8 42 28-69 65-111 (191)
159 TIGR03413 GSH_gloB hydroxyacyl 36.7 61 0.0013 29.1 4.7 43 33-76 120-166 (248)
160 TIGR01768 GGGP-family geranylg 36.6 64 0.0014 28.8 4.7 52 20-77 17-68 (223)
161 PF14639 YqgF: Holliday-juncti 36.4 1.4E+02 0.0031 24.8 6.5 24 16-39 49-72 (150)
162 cd06167 LabA_like LabA_like pr 35.9 1.1E+02 0.0024 24.6 5.8 46 17-74 86-132 (149)
163 cd01822 Lysophospholipase_L1_l 35.1 1.5E+02 0.0032 24.3 6.6 19 51-69 88-106 (177)
164 cd00758 MoCF_BD MoCF_BD: molyb 34.8 55 0.0012 26.3 3.8 29 15-44 44-72 (133)
165 COG3426 Butyrate kinase [Energ 34.5 66 0.0014 29.9 4.4 45 25-76 291-335 (358)
166 COG0381 WecB UDP-N-acetylgluco 34.5 1.3E+02 0.0027 29.2 6.5 55 11-75 69-128 (383)
167 cd01141 TroA_d Periplasmic bin 34.4 73 0.0016 26.7 4.7 38 24-72 63-100 (186)
168 KOG4184 Predicted sugar kinase 34.2 56 0.0012 31.2 4.0 53 16-68 224-279 (478)
169 COG1646 Predicted phosphate-bi 34.1 1.5E+02 0.0034 26.6 6.6 54 17-76 28-82 (240)
170 PRK10528 multifunctional acyl- 33.5 1.8E+02 0.004 24.6 7.1 51 18-68 59-112 (191)
171 COG4380 Uncharacterized protei 33.4 65 0.0014 27.2 3.9 60 1-71 13-72 (216)
172 cd06259 YdcF-like YdcF-like. Y 33.0 2.4E+02 0.0051 22.7 7.4 42 2-43 6-47 (150)
173 cd01829 SGNH_hydrolase_peri2 S 32.5 1.5E+02 0.0032 25.0 6.3 50 21-70 50-114 (200)
174 COG1358 RPL8A Ribosomal protei 32.4 1.9E+02 0.0042 22.9 6.3 45 20-72 33-78 (116)
175 KOG3167 Box H/ACA snoRNP compo 32.2 67 0.0015 26.3 3.7 45 21-72 66-110 (153)
176 COG0295 Cdd Cytidine deaminase 31.8 82 0.0018 25.8 4.2 68 3-75 41-111 (134)
177 PRK01018 50S ribosomal protein 31.5 1.7E+02 0.0038 22.3 5.8 46 20-73 22-67 (99)
178 PF01248 Ribosomal_L7Ae: Ribos 30.0 97 0.0021 23.1 4.2 45 20-71 21-65 (95)
179 PRK10834 vancomycin high tempe 30.0 2.5E+02 0.0055 25.3 7.4 8 32-39 83-90 (239)
180 COG2949 SanA Uncharacterized m 29.9 1.3E+02 0.0029 26.6 5.3 54 7-68 73-126 (235)
181 KOG0369 Pyruvate carboxylase [ 29.9 2.1E+02 0.0046 30.0 7.5 32 34-65 701-732 (1176)
182 cd01139 TroA_f Periplasmic bin 29.6 95 0.0021 29.0 5.0 42 23-71 84-125 (342)
183 PF01936 NYN: NYN domain; Int 28.3 1E+02 0.0022 24.5 4.4 43 18-71 83-126 (146)
184 PTZ00235 DNA polymerase epsilo 28.2 2.2E+02 0.0048 26.5 6.8 47 31-77 64-122 (291)
185 PF00582 Usp: Universal stress 27.8 2.6E+02 0.0055 21.0 6.6 21 19-39 91-111 (140)
186 TIGR02260 benz_CoA_red_B benzo 27.7 5.4E+02 0.012 25.1 9.9 69 18-89 338-406 (413)
187 PRK15367 type III secretion sy 26.7 2.7E+02 0.0058 27.1 7.3 83 162-291 295-377 (395)
188 PRK10241 hydroxyacylglutathion 26.3 1E+02 0.0022 27.8 4.3 43 34-77 122-168 (251)
189 cd01830 XynE_like SGNH_hydrola 26.1 2.1E+02 0.0046 24.3 6.3 19 51-69 106-124 (204)
190 PRK04169 geranylgeranylglycery 26.1 1.6E+02 0.0035 26.4 5.5 48 24-77 26-73 (232)
191 PRK09967 putative outer membra 26.0 1.8E+02 0.0038 24.4 5.5 46 34-79 48-97 (160)
192 KOG0377 Protein serine/threoni 25.9 39 0.00085 33.1 1.6 42 34-77 196-237 (631)
193 TIGR01012 Sa_S2_E_A ribosomal 25.0 1.1E+02 0.0023 26.8 4.1 38 29-77 107-158 (196)
194 COG5623 CLP1 Predicted GTPase 24.8 2.3E+02 0.005 26.8 6.3 66 2-76 220-289 (424)
195 COG0299 PurN Folate-dependent 24.6 90 0.002 27.3 3.4 30 11-40 60-89 (200)
196 cd01832 SGNH_hydrolase_like_1 23.8 3.1E+02 0.0068 22.5 6.7 17 50-66 91-107 (185)
197 KOG2476 Uncharacterized conser 23.7 1.6E+02 0.0034 29.3 5.1 57 16-75 19-76 (528)
198 TIGR02855 spore_yabG sporulati 23.6 73 0.0016 29.3 2.8 22 18-39 141-162 (283)
199 PRK13602 putative ribosomal pr 23.4 2.7E+02 0.0059 20.4 5.4 44 20-71 17-60 (82)
200 PF05582 Peptidase_U57: YabG p 22.9 77 0.0017 29.3 2.8 23 17-39 141-163 (287)
201 PF02421 FeoB_N: Ferrous iron 22.6 2.3E+02 0.0049 23.7 5.4 43 24-73 72-114 (156)
202 TIGR01918 various_sel_PB selen 22.1 3.2E+02 0.0069 26.9 6.9 51 14-70 320-370 (431)
203 cd03786 GT1_UDP-GlcNAc_2-Epime 21.9 3E+02 0.0066 25.4 6.9 48 16-73 74-121 (363)
204 COG5012 Predicted cobalamin bi 21.7 1E+02 0.0022 27.5 3.3 54 4-73 139-194 (227)
205 PRK14048 ferrichrome/ferrioxam 21.6 1.9E+02 0.0042 27.4 5.5 42 24-72 115-156 (374)
206 cd01838 Isoamyl_acetate_hydrol 21.3 2.4E+02 0.0052 23.4 5.6 41 30-70 63-113 (199)
207 TIGR03677 rpl7ae 50S ribosomal 21.3 2.6E+02 0.0057 22.0 5.3 45 20-71 32-76 (117)
208 COG0123 AcuC Deacetylases, inc 21.2 2.8E+02 0.0061 26.4 6.4 68 5-72 210-290 (340)
209 COG4752 Uncharacterized protei 21.0 4E+02 0.0088 22.3 6.3 60 16-83 88-149 (190)
210 PF13117 Cag12: Cag pathogenic 20.9 41 0.0009 26.6 0.6 13 1-13 6-18 (113)
211 PRK11914 diacylglycerol kinase 20.9 2.4E+02 0.0051 26.0 5.8 44 18-72 52-96 (306)
212 COG2607 Predicted ATPase (AAA+ 20.8 2.4E+02 0.0051 25.9 5.4 41 17-58 125-165 (287)
213 cd02071 MM_CoA_mut_B12_BD meth 20.7 4.2E+02 0.009 20.7 6.6 48 20-73 40-89 (122)
214 PRK15473 cbiF cobalt-precorrin 20.1 3E+02 0.0064 24.8 6.1 33 33-72 84-116 (257)
215 cd01537 PBP1_Repressors_Sugar_ 20.0 2.3E+02 0.0049 24.3 5.3 48 18-75 43-90 (264)
216 PTZ00365 60S ribosomal protein 20.0 2.8E+02 0.0061 25.4 5.7 48 18-73 136-184 (266)
No 1
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=100.00 E-value=9.8e-58 Score=412.21 Aligned_cols=293 Identities=49% Similarity=0.835 Sum_probs=253.6
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHh
Q 020182 12 WQLRKLLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISL 91 (330)
Q Consensus 12 ~~~~~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~ 91 (330)
|-+...|++.+-+.+..++|||||+|||+|++..+.++...+.++++|+++.+|||++++||||.+..++|+++++++..
T Consensus 82 ~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~ 161 (379)
T KOG1432|consen 82 CCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRLQLMKFISK 161 (379)
T ss_pred hhcCccHHHHHHHHHhccCCCEEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEecccccccccCHHHHHHHHhc
Confidence 34456677788888889999999999999999877788899999999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCC-CcCcCCCCcHHHHH
Q 020182 92 MDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVR-GVRTYGYIKESQLR 170 (330)
Q Consensus 92 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~-~~~~~g~i~~~Ql~ 170 (330)
+|+++++++|... ..+ ...|.+||.+.+++..++.....++..++||||+.+...+ ...+|+||..+|.+
T Consensus 162 lP~s~~~v~p~dg--------~~~-~~~g~gnyn~~i~~~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~ 232 (379)
T KOG1432|consen 162 LPYSLSQVNPPDG--------HMY-IIDGFGNYNLQIEGAIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLE 232 (379)
T ss_pred CCCccccCCCccc--------cee-eeecccceEEEeccCCCcccccCceeeEEEEecCCcccccccccCccchhhhhHH
Confidence 9999999887642 221 1567789999998766666566678999999999988765 45799999999999
Q ss_pred HHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCcccccc-CCccccccccCcCCcCChHHHHHHHhcCCeeEEEecc
Q 020182 171 WLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYY-QNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGH 249 (330)
Q Consensus 171 WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~-~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH 249 (330)
||..+..+.+... ... ...|.++|+|+|+.|+...+. ..+.|.++|++.++..|.+++..|.+..+||+|||||
T Consensus 233 wl~~~~~~~~~~~----~~~-~P~p~La~~HIP~~E~~~~~~~tp~~g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GH 307 (379)
T KOG1432|consen 233 WLSDTSKEFKEPN----SKY-NPQPGLAFFHIPLPEFLELESKTPLIGVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGH 307 (379)
T ss_pred HHhhhhhhhhccc----Ccc-CCCCceEEEEcccHHHhhccCCCcccceeeccccccccccHHHHHHHhccCcceEEecc
Confidence 9999876543321 011 223899999999999988775 4567999999999999999999999999999999999
Q ss_pred CCCCCcccCCCC-eEEEEeCcccCCCCCCCCCCCceEEEEEecCCCCCCcccccceEEEEEccCCCCCceeceeeecc
Q 020182 250 DHTNDFCGNLNG-IWFCYGGGIGYHGYGKAGWPRRARIILAEAGKGENGWMEVEMIKTWKRLDDQRLSKIDEQVLWEM 326 (330)
Q Consensus 250 ~H~n~~~~~~~G-i~l~~~~~tg~~~yg~~~~~~g~Rv~el~~~~~~~~~~~~~~~~tw~r~~~~~~~~~~~~~~~~~ 326 (330)
+|.||||+..+| +||||+|++||++||..+|.|++||||++..+ .+|+||+||+|...+++|+|++|+-
T Consensus 308 dHvNDfC~~~k~~~wlCygGgaGyggYg~~gw~Rr~Rv~e~d~~~--------~~IkTWKRl~d~~~~~~D~q~l~d~ 377 (379)
T KOG1432|consen 308 DHVNDFCGELKGELWLCYGGGAGYGGYGIGGWERRARVFELDLNK--------DRIKTWKRLDDKPLSVIDYQLLYDG 377 (379)
T ss_pred ccccceecccCCeEEEEecCCCccCCcCcCCcccceEEEEccccc--------cccceeeecCCCCcceeeeEEEecc
Confidence 999999999999 99999999999999988899999999999643 6899999999999999999999973
No 2
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.96 E-value=7e-28 Score=220.39 Aligned_cols=219 Identities=19% Similarity=0.186 Sum_probs=147.0
Q ss_pred hhhHHHHHHHHHHHHHhc--CCcEEEEcCCccCCCCcccH----HHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHH
Q 020182 12 WQLRKLLAARLLCWVLIS--QWIYEYHEGDNIFGSSTTDV----AESMIQAFGPAMELGLPWAAVLGNHDQESTMDREEL 85 (330)
Q Consensus 12 ~~~~~~~~~~~~~~i~~~--~pD~vV~tGDli~~~~~~~~----~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l 85 (330)
|.....+++++++.+.+. +|||||++|||++++...+. ++.+.++++.+ ..++|+++++||||.......+.+
T Consensus 29 ~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~~-~~~vp~~~i~GNHD~~~~~~~~~~ 107 (262)
T cd07395 29 WDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSLL-DPDIPLVCVCGNHDVGNTPTEESI 107 (262)
T ss_pred hhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhhc-cCCCcEEEeCCCCCCCCCCChhHH
Confidence 444456778888888877 89999999999999854321 22333333322 237999999999998654433333
Q ss_pred HHHHHhcCCcccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCc
Q 020182 86 MYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIK 165 (330)
Q Consensus 86 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~ 165 (330)
..+... +|...|.+.. + .++|++|||..+... ...+.+.
T Consensus 108 ~~f~~~---------------------------~g~~~y~~~~-~----------~~~~i~lds~~~~~~---~~~~~~~ 146 (262)
T cd07395 108 KDYRDV---------------------------FGDDYFSFWV-G----------GVFFIVLNSQLFFDP---SEVPELA 146 (262)
T ss_pred HHHHHH---------------------------hCCcceEEEE-C----------CEEEEEeccccccCc---cccccch
Confidence 333221 1222355433 2 379999999765321 1335689
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEE
Q 020182 166 ESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAV 245 (330)
Q Consensus 166 ~~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v 245 (330)
.+|++||+++|++.++. +.+++|||+|||++.......+.. ......+...+..+++.++|+++
T Consensus 147 ~~ql~WL~~~L~~~~~~---------~~~~~iv~~H~P~~~~~~~~~~~~-------~~~~~~~~~~l~~ll~~~~V~~v 210 (262)
T cd07395 147 QAQDVWLEEQLEIAKES---------DCKHVIVFQHIPWFLEDPDEEDSY-------FNIPKSVRKPLLDKFKKAGVKAV 210 (262)
T ss_pred HHHHHHHHHHHHHHHhc---------cCCcEEEEECcCCccCCCCCCccc-------CCcCHHHHHHHHHHHHhcCceEE
Confidence 99999999987776521 357899999999986432211110 01112344556666666689999
Q ss_pred EeccCCCCCcccCCCCeEEEEeCcccCCCCCCCCCCCceEEEEEecC
Q 020182 246 FVGHDHTNDFCGNLNGIWFCYGGGIGYHGYGKAGWPRRARIILAEAG 292 (330)
Q Consensus 246 ~~GH~H~n~~~~~~~Gi~l~~~~~tg~~~yg~~~~~~g~Rv~el~~~ 292 (330)
||||+|.+.. ..++|+.++.++++|+ .++ ..++|+|+++|+.+
T Consensus 211 ~~GH~H~~~~-~~~~g~~~~~~~~~~~-~~~--~~~~g~~~~~v~~~ 253 (262)
T cd07395 211 FSGHYHRNAG-GRYGGLEMVVTSAIGA-QLG--NDKSGLRIVKVTED 253 (262)
T ss_pred EECccccCCc-eEECCEEEEEcCceec-ccC--CCCCCcEEEEECCC
Confidence 9999998876 5689999999999987 454 35799999999853
No 3
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.96 E-value=8.9e-28 Score=221.30 Aligned_cols=218 Identities=18% Similarity=0.184 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHhc--CCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcC
Q 020182 16 KLLAARLLCWVLIS--QWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMD 93 (330)
Q Consensus 16 ~~~~~~~~~~i~~~--~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~ 93 (330)
...++++++.+++. +|||||+|||+++++. .+.++.+.+ .+.+.++|+++++||||.... +.+++....
T Consensus 39 ~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~-~~~~~~~~~---~l~~l~~Pv~~v~GNHD~~~~-----~~~~~~~~~ 109 (275)
T PRK11148 39 WESYQAVLEAIRAQQHEFDLIVATGDLAQDHS-SEAYQHFAE---GIAPLRKPCVWLPGNHDFQPA-----MYSALQDAG 109 (275)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC-HHHHHHHHH---HHhhcCCcEEEeCCCCCChHH-----HHHHHhhcC
Confidence 34567777777654 6899999999999874 334444444 444678999999999998421 222221110
Q ss_pred CcccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCcHHHHHHHH
Q 020182 94 YSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLH 173 (330)
Q Consensus 94 ~~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~~~Ql~WL~ 173 (330)
..+ .+.+. .. ..+++++|||.... ..+|+++++|++||+
T Consensus 110 -----~~~---------------------~~~~~-~~---------~~~~~i~Lds~~~g-----~~~G~l~~~ql~wL~ 148 (275)
T PRK11148 110 -----ISP---------------------AKHVL-IG---------EHWQILLLDSQVFG-----VPHGELSEYQLEWLE 148 (275)
T ss_pred -----CCc---------------------cceEE-ec---------CCEEEEEecCCCCC-----CcCCEeCHHHHHHHH
Confidence 000 11211 11 24799999997653 246889999999999
Q ss_pred HHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHH-hcCCeeEEEeccCCC
Q 020182 174 RVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLV-SLGDIKAVFVGHDHT 252 (330)
Q Consensus 174 ~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~-~~~~V~~v~~GH~H~ 252 (330)
++|++.+ .++.+||+||||......|.+... ..|...+..++ +.++|++|||||+|.
T Consensus 149 ~~L~~~~------------~~~~vv~~hH~P~~~~~~~~d~~~----------l~n~~~l~~ll~~~~~v~~vl~GH~H~ 206 (275)
T PRK11148 149 RKLADAP------------ERHTLVLLHHHPLPAGCAWLDQHS----------LRNAHELAEVLAKFPNVKAILCGHIHQ 206 (275)
T ss_pred HHHhhCC------------CCCeEEEEcCCCCCCCcchhhccC----------CCCHHHHHHHHhcCCCceEEEecccCh
Confidence 9665542 356788888766554433322211 34555555555 556899999999997
Q ss_pred CCcccCCCCeEEEEeCcccCC------CCCCCCCCCceEEEEEecCCCCCCcccccceEEEEEccCCC
Q 020182 253 NDFCGNLNGIWFCYGGGIGYH------GYGKAGWPRRARIILAEAGKGENGWMEVEMIKTWKRLDDQR 314 (330)
Q Consensus 253 n~~~~~~~Gi~l~~~~~tg~~------~yg~~~~~~g~Rv~el~~~~~~~~~~~~~~~~tw~r~~~~~ 314 (330)
.++..++|+.++.+|++|+. .++.+..++|||+++++. +| ....+++|+++..
T Consensus 207 -~~~~~~~gi~~~~~ps~~~q~~~~~~~~~~~~~~~g~~~~~l~~-~g-------~~~~~~~~~~~~~ 265 (275)
T PRK11148 207 -ELDLDWNGRRLLATPSTCVQFKPHCTNFTLDTVAPGWRELELHA-DG-------SLETEVHRLADTE 265 (275)
T ss_pred -HHhceECCEEEEEcCCCcCCcCCCCCccccccCCCcEEEEEEcC-CC-------cEEEEEEEcCCCC
Confidence 45677899999999999972 222235678999999974 32 2344458988743
No 4
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.96 E-value=2.8e-28 Score=214.19 Aligned_cols=170 Identities=41% Similarity=0.800 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccCCCCccc-HHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCC
Q 020182 16 KLLAARLLCWVLISQWIYEYHEGDNIFGSSTTD-VAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDY 94 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~-~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~ 94 (330)
..+.+.+.+.+...+||+||+|||++++..... +++.+.++++++.+.++|+++++||||..
T Consensus 27 ~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD~~----------------- 89 (199)
T cd07383 27 LKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFGNHDGY----------------- 89 (199)
T ss_pred HHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECccCCCC-----------------
Confidence 345555556667789999999999999886432 57788888888888899999999999910
Q ss_pred cccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCcHHHHHHHHH
Q 020182 95 SVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHR 174 (330)
Q Consensus 95 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~ 174 (330)
|++.++|++||++
T Consensus 90 -------------------------------------------------------------------g~l~~~ql~wL~~ 102 (199)
T cd07383 90 -------------------------------------------------------------------DWIRPSQIEWFKE 102 (199)
T ss_pred -------------------------------------------------------------------CCCCHHHHHHHHH
Confidence 1355789999999
Q ss_pred HHHHHHhhhcccccccCCCCceEEEEecCCCCcccccc--CCccccccccCcCCcCChHHHHHHHhcCCeeEEEeccCCC
Q 020182 175 VSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYY--QNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHT 252 (330)
Q Consensus 175 ~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~--~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH~H~ 252 (330)
+++++... .....+.++|+|||+++....|. ..+.|.++|...+...+.++++.+.+.++|++|||||+|.
T Consensus 103 ~l~~~~~~-------~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~ 175 (199)
T cd07383 103 TSAALKKK-------YGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGHDHG 175 (199)
T ss_pred HHHHHhhc-------cCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCC
Confidence 88887521 01357999999999999887775 4556888887767777889999999999999999999999
Q ss_pred CCcccCCCCeEEEEeCcccCCCCC
Q 020182 253 NDFCGNLNGIWFCYGGGIGYHGYG 276 (330)
Q Consensus 253 n~~~~~~~Gi~l~~~~~tg~~~yg 276 (330)
|+++...+|+++|+++.||+++||
T Consensus 176 ~~~~~~~~~i~l~~g~~~g~~~y~ 199 (199)
T cd07383 176 NDFCGRYNGIWLCYGRGTGYGGYG 199 (199)
T ss_pred cceecccCCEEEeCCCCCCCCCCC
Confidence 999999999999999999999986
No 5
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.94 E-value=1.5e-24 Score=199.03 Aligned_cols=211 Identities=21% Similarity=0.195 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCC
Q 020182 15 RKLLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDY 94 (330)
Q Consensus 15 ~~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~ 94 (330)
....++++++.++..+||+||++||+++++. .+..+.+..+.+.+.+.++|+++++||||..... ...+. ..+
T Consensus 25 ~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~-~~~~~~~~~~~~~l~~l~~p~~~v~GNHD~~~~~-~~~~~-----~~~ 97 (267)
T cd07396 25 SLEKLEEAVEEWNRESLDFVVQLGDIIDGDN-ARAEEALDAVLAILDRLKGPVHHVLGNHDLYNPS-REYLL-----LYT 97 (267)
T ss_pred hHHHHHHHHHHHHcCCCCEEEECCCeecCCC-chHHHHHHHHHHHHHhcCCCEEEecCcccccccc-Hhhhh-----ccc
Confidence 3556788899998889999999999998875 3233456666666667899999999999987432 22110 000
Q ss_pred cccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCC--C---------------
Q 020182 95 SVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVR--G--------------- 157 (330)
Q Consensus 95 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~--~--------------- 157 (330)
. ...+...|.+... ++++++|||....... .
T Consensus 98 ------~---------------~~~~~~yysf~~~-----------~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (267)
T cd07396 98 ------L---------------LGLGAPYYSFSPG-----------GIRFIVLDGYDISALGRPEDTPKAENADDNSNLG 145 (267)
T ss_pred ------c---------------cCCCCceEEEecC-----------CcEEEEEeCCccccccCCCCChhhhhHHHhchhh
Confidence 0 0112223555331 4799999996532110 0
Q ss_pred --------cCcCCCCcHHHHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCC
Q 020182 158 --------VRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVN 229 (330)
Q Consensus 158 --------~~~~g~i~~~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n 229 (330)
....|.++++|++||++++++.+. ...++|||+|||+..... . .. ....|
T Consensus 146 ~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~----------~~~~viV~~Hhp~~~~~~-~-~~----------~~~~~ 203 (267)
T cd07396 146 LYLSEPRFVDWNGGIGEEQLQWLRNELQEADA----------NGEKVIIFSHFPLHPEST-S-PH----------GLLWN 203 (267)
T ss_pred hhccCccceeccCcCCHHHHHHHHHHHHHHHh----------cCCeEEEEEeccCCCCCC-C-cc----------ccccC
Confidence 012578999999999997776642 356899999999875432 0 00 01234
Q ss_pred hHHHHHHH-hcCCeeEEEeccCCCCCcccCCCCeEEEEeCcccCCCCCCCCCCCceEEEEEec
Q 020182 230 SGVLQTLV-SLGDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYHGYGKAGWPRRARIILAEA 291 (330)
Q Consensus 230 ~~~l~~l~-~~~~V~~v~~GH~H~n~~~~~~~Gi~l~~~~~tg~~~yg~~~~~~g~Rv~el~~ 291 (330)
...+..++ +.++|+++||||+|.+.. ...+|+.++.+|++|.. + ...+-+-+++++.
T Consensus 204 ~~~~~~ll~~~~~V~~v~~GH~H~~~~-~~~~gi~~~~~~a~~~~--~--~~~~~~~~~~~~~ 261 (267)
T cd07396 204 HEEVLSILRAYGCVKACISGHDHEGGY-AQRHGIHFLTLEGMVET--P--PESNAFGVVIVYE 261 (267)
T ss_pred HHHHHHHHHhCCCEEEEEcCCcCCCCc-cccCCeeEEEechhhcC--C--CCCCceEEEEEeC
Confidence 44444544 446899999999998875 45899999999999986 4 3456778888884
No 6
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.92 E-value=3.5e-23 Score=186.50 Aligned_cols=207 Identities=19% Similarity=0.205 Sum_probs=136.7
Q ss_pred hHHHHHHHHHHHHHhc--CCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHh
Q 020182 14 LRKLLAARLLCWVLIS--QWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISL 91 (330)
Q Consensus 14 ~~~~~~~~~~~~i~~~--~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~ 91 (330)
.....++++++.+.+. +||+||++||+++.+. .+.++.+.+++ .++++|+++++||||... .+.+++..
T Consensus 22 ~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~-~~~~~~~~~~l---~~~~~p~~~v~GNHD~~~-----~~~~~~~~ 92 (240)
T cd07402 22 DTAASLEAVLAHINALHPRPDLVLVTGDLTDDGS-PESYERLRELL---AALPIPVYLLPGNHDDRA-----AMRAVFPE 92 (240)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCC-HHHHHHHHHHH---hhcCCCEEEeCCCCCCHH-----HHHHhhcc
Confidence 3355678888888887 8999999999999874 33344444444 456899999999999742 11111110
Q ss_pred cCCcccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCcHHHHHH
Q 020182 92 MDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRW 171 (330)
Q Consensus 92 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~~~Ql~W 171 (330)
... ..+..+|.+.+ .++++++|||..... .+++++++|++|
T Consensus 93 ~~~-----------------------~~~~~~~~~~~-----------~~~~~i~lds~~~~~-----~~~~~~~~ql~w 133 (240)
T cd07402 93 LPP-----------------------APGFVQYVVDL-----------GGWRLILLDSSVPGQ-----HGGELCAAQLDW 133 (240)
T ss_pred ccc-----------------------cccccceeEec-----------CCEEEEEEeCCCCCC-----cCCEECHHHHHH
Confidence 000 01122455543 247999999976532 456799999999
Q ss_pred HHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHH-HHhcCCeeEEEeccC
Q 020182 172 LHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQT-LVSLGDIKAVFVGHD 250 (330)
Q Consensus 172 L~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~-l~~~~~V~~v~~GH~ 250 (330)
|+++|++. ...++|+++||||......+.+.. ...+...+.. +.+.++|+++||||.
T Consensus 134 L~~~L~~~------------~~~~~il~~H~pp~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~v~~v~~GH~ 191 (240)
T cd07402 134 LEAALAEA------------PDKPTLVFLHHPPFPVGIAWMDAI----------GLRNAEALAAVLARHPNVRAILCGHV 191 (240)
T ss_pred HHHHHHhC------------CCCCEEEEECCCCccCCchhhhhh----------hCCCHHHHHHHHhcCCCeeEEEECCc
Confidence 99965443 256899999999976532211110 0234444444 444458999999999
Q ss_pred CCCCcccCCCCeEEEEeCcccCC--CCCC----CCCCCceEEEEEec
Q 020182 251 HTNDFCGNLNGIWFCYGGGIGYH--GYGK----AGWPRRARIILAEA 291 (330)
Q Consensus 251 H~n~~~~~~~Gi~l~~~~~tg~~--~yg~----~~~~~g~Rv~el~~ 291 (330)
|.. .....+|+.++.++++|+. .... .....||+-+.|..
T Consensus 192 H~~-~~~~~~g~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (240)
T cd07402 192 HRP-IDGSWGGIPLLTAPSTCHQFAPDLDDFALDALAPGYRALSLHE 237 (240)
T ss_pred Cch-HHeEECCEEEEEcCcceeeecCCCCcccccccCCCCcEEEEec
Confidence 974 4567899999999999982 1111 23346999999974
No 7
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.91 E-value=8.9e-23 Score=189.47 Aligned_cols=245 Identities=14% Similarity=0.059 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccCCCCcc--cHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcC
Q 020182 16 KLLAARLLCWVLISQWIYEYHEGDNIFGSSTT--DVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMD 93 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~--~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~ 93 (330)
..+++++.+. ..+|||||++||++++.... ..++.+.+.++++. ..+|+++++||||.......... ....
T Consensus 21 ~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~~GNHD~~~~~~~~~~----~~~~ 93 (294)
T cd00839 21 TNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLA-SYVPYMVTPGNHEADYNFSFYKI----KAFF 93 (294)
T ss_pred HHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHH-hcCCcEEcCcccccccCCCCccc----cccc
Confidence 3344444433 47899999999999876543 45666777777664 46999999999998754322100 0000
Q ss_pred CcccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCcHHHHHHHH
Q 020182 94 YSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLH 173 (330)
Q Consensus 94 ~~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~~~Ql~WL~ 173 (330)
. ....+... ....+...|.+.+ ..++|++|||..... .+.+..+|++||+
T Consensus 94 ~--~~~~~~~~-----------~~~~~~~~Ysf~~-----------g~v~fi~Lds~~~~~------~~~~~~~q~~WL~ 143 (294)
T cd00839 94 P--RFRFPHSP-----------SGSTSNLWYSFDV-----------GPVHFVSLSTEVDFY------GDGPGSPQYDWLE 143 (294)
T ss_pred c--cccccCCC-----------CCCCCCceEEEee-----------CCEEEEEEecccccc------cCCCCcHHHHHHH
Confidence 0 00000000 0011222355543 247999999975421 3568899999999
Q ss_pred HHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEEeccCCCC
Q 020182 174 RVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTN 253 (330)
Q Consensus 174 ~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH~H~n 253 (330)
+.|++..+. ..+++||++|+|++......... . ........|..|++..+|+++||||+|.+
T Consensus 144 ~~L~~~~~~---------~~~~~iv~~H~P~~~~~~~~~~~-------~--~~~~~~~~l~~ll~~~~v~~vl~GH~H~y 205 (294)
T cd00839 144 ADLAKVDRS---------KTPWIIVMGHRPMYCSNTDHDDC-------I--EGEKMRAALEDLFYKYGVDLVLSGHVHAY 205 (294)
T ss_pred HHHHHhccc---------CCCeEEEEeccCcEecCcccccc-------c--hhHHHHHHHHHHHHHhCCCEEEEccceee
Confidence 977665421 23579999999997643221000 0 00123456666666668999999999987
Q ss_pred Cccc---------------CCCCeEEEEeCcccCCCCCC------------CCCCCceEEEEEecCCCCCCcccccceEE
Q 020182 254 DFCG---------------NLNGIWFCYGGGIGYHGYGK------------AGWPRRARIILAEAGKGENGWMEVEMIKT 306 (330)
Q Consensus 254 ~~~~---------------~~~Gi~l~~~~~tg~~~yg~------------~~~~~g~Rv~el~~~~~~~~~~~~~~~~t 306 (330)
.... ..+|+.++..|+.|...+.. .....|+-++++..+. .-.-.
T Consensus 206 ~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~t--------~l~~~ 277 (294)
T cd00839 206 ERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEGLDPFSAPPPAWSAFRESDYGFGRLTVHNST--------HLHFE 277 (294)
T ss_pred EeechhhCCEeccccccccCCCccEEEEECCCccccCcCcccCCCCCceEEEeccCCEEEEEEEecC--------eEEEE
Confidence 5422 24788888888877532210 1234788888887321 23445
Q ss_pred EEEccCCCCCceeceeeec
Q 020182 307 WKRLDDQRLSKIDEQVLWE 325 (330)
Q Consensus 307 w~r~~~~~~~~~~~~~~~~ 325 (330)
|++..++ .++|+-+|.+
T Consensus 278 ~~~~~~g--~v~D~f~i~k 294 (294)
T cd00839 278 WIRNDDG--VVIDSFWIIK 294 (294)
T ss_pred EEECCCC--eEEEEEEEeC
Confidence 6777666 5999988753
No 8
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.90 E-value=4.9e-22 Score=183.04 Aligned_cols=221 Identities=17% Similarity=0.155 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCccCCCCcc-c----HHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHh
Q 020182 17 LLAARLLCWVLISQWIYEYHEGDNIFGSSTT-D----VAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISL 91 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~-~----~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~ 91 (330)
.+++.+.+.+...+|||||++||++++.... + ..+.+.++++.+. .++||++++||||........ + .+..
T Consensus 19 ~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~-~~~P~~~v~GNHD~~~~~~~~-~-~~~~- 94 (277)
T cd07378 19 AVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPS-LQVPWYLVLGNHDYSGNVSAQ-I-DYTK- 94 (277)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchh-hcCCeEEecCCcccCCCchhe-e-ehhc-
Confidence 3434444445557899999999998766422 1 1133445554433 689999999999987543221 0 0000
Q ss_pred cCCcccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCC------CcCcCCCCc
Q 020182 92 MDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVR------GVRTYGYIK 165 (330)
Q Consensus 92 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~------~~~~~g~i~ 165 (330)
.+ ..+. ...+...|.+.....+ ....++|++|||....... .....+.+.
T Consensus 95 ~~-----~~~~--------------~~~~~~~y~~~~~~~~-----~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~ 150 (277)
T cd07378 95 RP-----NSPR--------------WTMPAYYYRVSFPFPS-----SDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLA 150 (277)
T ss_pred cC-----CCCC--------------ccCcchheEEEeecCC-----CCCEEEEEEEeChhHcCccccccccccCcchhhH
Confidence 00 0111 0111124555443100 1236899999998653211 012346799
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEE
Q 020182 166 ESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAV 245 (330)
Q Consensus 166 ~~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v 245 (330)
.+|++||+++|++. ..+++||++|||++........ ......|..+++..+|+++
T Consensus 151 ~~Q~~wL~~~L~~~------------~~~~~iv~~H~P~~~~~~~~~~-------------~~~~~~l~~l~~~~~v~~v 205 (277)
T cd07378 151 EEQLAWLEKTLAAS------------TADWKIVVGHHPIYSSGEHGPT-------------SCLVDRLLPLLKKYKVDAY 205 (277)
T ss_pred HHHHHHHHHHHHhc------------CCCeEEEEeCccceeCCCCCCc-------------HHHHHHHHHHHHHcCCCEE
Confidence 99999999965443 2468999999999764321100 0123445555555579999
Q ss_pred EeccCCCCCcccCCC--CeEEEEeCcccCCCCCC-------------CCCCCceEEEEEec
Q 020182 246 FVGHDHTNDFCGNLN--GIWFCYGGGIGYHGYGK-------------AGWPRRARIILAEA 291 (330)
Q Consensus 246 ~~GH~H~n~~~~~~~--Gi~l~~~~~tg~~~yg~-------------~~~~~g~Rv~el~~ 291 (330)
||||+|..... ..+ |+.++.+++.|...++. .....|+.+++|+.
T Consensus 206 l~GH~H~~~~~-~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~ 265 (277)
T cd07378 206 LSGHDHNLQHI-KDDGSGTSFVVSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTK 265 (277)
T ss_pred EeCCcccceee-ecCCCCcEEEEeCCCcccCCCCCccCcccccccccccCCCCEEEEEEec
Confidence 99999986643 444 99999888777532211 12347999999984
No 9
>PLN02533 probable purple acid phosphatase
Probab=99.90 E-value=7.1e-22 Score=191.94 Aligned_cols=244 Identities=20% Similarity=0.175 Sum_probs=150.7
Q ss_pred HHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCC--HHHHHHHHHhcCCcccc
Q 020182 21 RLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMD--REELMYFISLMDYSVAQ 98 (330)
Q Consensus 21 ~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~--~~~l~~~~~~~~~~~~~ 98 (330)
.+++.+.+.+|||||++||+++.......+..+.+.++++. ..+||++++||||...... .+.+..+...+
T Consensus 156 ~tl~~i~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~-s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf------ 228 (427)
T PLN02533 156 STLEHVSKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPLA-SQRPWMVTHGNHELEKIPILHPEKFTAYNARW------ 228 (427)
T ss_pred HHHHHHHhcCCCEEEEcCccccccchHHHHHHHHHHhhhHh-hcCceEEeCccccccccccccCcCccchhhcc------
Confidence 45566677899999999999997643334566777777764 4599999999999864210 01011111111
Q ss_pred cCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCcHHHHHHHHHHHHH
Q 020182 99 VNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEA 178 (330)
Q Consensus 99 ~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~l~~ 178 (330)
..|.... ...+...|++.+. .++|++|||.... ....+|++||++.|++
T Consensus 229 ~mP~~~~-----------g~~~~~yYSfd~g-----------~vhfI~Lds~~~~---------~~~~~Q~~WLe~dL~~ 277 (427)
T PLN02533 229 RMPFEES-----------GSTSNLYYSFNVY-----------GVHIIMLGSYTDF---------EPGSEQYQWLENNLKK 277 (427)
T ss_pred cCCcccc-----------CCCCCceEEEEEC-----------CEEEEEEeCCccc---------cCchHHHHHHHHHHHh
Confidence 1121000 0011124556542 3799999996421 2458999999997776
Q ss_pred HHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEEeccCCCCCccc-
Q 020182 179 LQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFCG- 257 (330)
Q Consensus 179 l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH~H~n~~~~- 257 (330)
..+. ..+++||++|+|++....... + +.. .......|+.|++.++|+++||||+|.+....
T Consensus 278 ~~r~---------~~pwiIv~~H~P~y~s~~~~~----~---~~~--~~~~r~~le~Ll~~~~VdlvlsGH~H~YeR~~p 339 (427)
T PLN02533 278 IDRK---------TTPWVVAVVHAPWYNSNEAHQ----G---EKE--SVGMKESMETLLYKARVDLVFAGHVHAYERFDR 339 (427)
T ss_pred hccc---------CCCEEEEEeCCCeeecccccC----C---cch--hHHHHHHHHHHHHHhCCcEEEecceeccccccc
Confidence 5421 346799999999986532210 1 000 00113456677777789999999999876432
Q ss_pred ------CCCCeEEEEeCcccCC-----CCC--CCCC------CCceEEEEEecCCCCCCcccccceEEEEEccCCCCCce
Q 020182 258 ------NLNGIWFCYGGGIGYH-----GYG--KAGW------PRRARIILAEAGKGENGWMEVEMIKTWKRLDDQRLSKI 318 (330)
Q Consensus 258 ------~~~Gi~l~~~~~tg~~-----~yg--~~~~------~~g~Rv~el~~~~~~~~~~~~~~~~tw~r~~~~~~~~~ 318 (330)
...|..++..|..|.. .+. ...| .-|+-.+.+... ..-..+|+|..++..++.
T Consensus 340 ~~~~~~~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~s~~r~~~~G~~~l~v~n~--------t~l~~~~~~~~~~~~~~~ 411 (427)
T PLN02533 340 VYQGKTDKCGPVYITIGDGGNREGLATKYIDPKPDISLFREASFGHGQLNVVDA--------NTMEWTWHRNDDDQSVAS 411 (427)
T ss_pred ccCCccCCCCCEEEEeCCCccccccccccCCCCCCceeEEeccCCEEEEEEEcC--------CeEEEEEEecCCCCceee
Confidence 2356777777766542 111 1112 357777776532 256678899888877899
Q ss_pred eceeeeccCC
Q 020182 319 DEQVLWEMCP 328 (330)
Q Consensus 319 ~~~~~~~~~~ 328 (330)
|+.||-+...
T Consensus 412 D~~~i~~~~~ 421 (427)
T PLN02533 412 DSVWLKSLLT 421 (427)
T ss_pred eEEEEEeccC
Confidence 9999987765
No 10
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.85 E-value=1.4e-19 Score=173.92 Aligned_cols=133 Identities=20% Similarity=0.316 Sum_probs=90.0
Q ss_pred cccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCcHHHHHHHHHHHHHHHhhhcccccccCCCCceEEE
Q 020182 120 GFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAF 199 (330)
Q Consensus 120 g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf 199 (330)
|..+|.+.+.+ .++||+|||..+.. ...|.++++|++||+++|++. +.+++|||
T Consensus 290 G~~YYSFd~~g----------gvrfIvLDSt~~~G----~~~G~L~eeQL~WLeqeLa~a------------~~k~VVVf 343 (496)
T TIGR03767 290 GTGYYTFDIAG----------GVRGISMDTTNRAG----GDEGSLGQTQFKWIKDTLRAS------------SDTLFVLF 343 (496)
T ss_pred CCceEEEEeEC----------CEEEEEEeCCCcCC----CcCCccCHHHHHHHHHHHhcC------------CCCCEEEE
Confidence 44567777543 48999999986421 245789999999999966542 35689999
Q ss_pred EecCCCCccccccCCcc-ccccccCcCCcCC-hHHHHHHHhcCCeeEEEeccCCCCCcccCC---------CCeEEEEeC
Q 020182 200 FHIPIPETPQLYYQNIV-GQFQEAVACSRVN-SGVLQTLVSLGDIKAVFVGHDHTNDFCGNL---------NGIWFCYGG 268 (330)
Q Consensus 200 ~H~Pl~~~~~~~~~~~~-G~~~e~~~~~~~n-~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~---------~Gi~l~~~~ 268 (330)
+|||++.....+.+.+. +. ...| .++++.|...++|++|||||.|.|+.. .+ +|+|-+.++
T Consensus 344 ~HHPp~s~g~~~~Dp~~pg~-------~~~n~~eLldLL~~ypnV~aVfsGHvH~n~i~-~~~~~~~~~p~~gfweI~Ta 415 (496)
T TIGR03767 344 SHHTSWSMVNELTDPVDPGE-------KRHLGTELVSLLLEHPNVLAWVNGHTHSNKIT-AHRRVEGVGKDKGFWEINTA 415 (496)
T ss_pred ECCCCccccccccccccccc-------cccCHHHHHHHHhcCCCceEEEECCcCCCccc-cccCCCCCCCcCCeEEEecc
Confidence 99999875544433221 11 1224 356666666679999999999998743 22 244444432
Q ss_pred cccCCCCCCCCCCCceEEEEEecCC
Q 020182 269 GIGYHGYGKAGWPRRARIILAEAGK 293 (330)
Q Consensus 269 ~tg~~~yg~~~~~~g~Rv~el~~~~ 293 (330)
+ + .+++.-+|||||..+.
T Consensus 416 S-----l--vdfPq~~Ri~Ei~~n~ 433 (496)
T TIGR03767 416 S-----H--IDFPQQGRIIELADNQ 433 (496)
T ss_pred c-----c--ccCCCCceEEEEEeCC
Confidence 2 1 3789999999998543
No 11
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.85 E-value=8.2e-20 Score=162.26 Aligned_cols=173 Identities=17% Similarity=0.189 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCCc
Q 020182 16 KLLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDYS 95 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~~ 95 (330)
...++.+++.+.+.+||+||++||+++.+.....+..+.++++.+.+.++|+++++||||.-
T Consensus 21 ~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD~~------------------ 82 (214)
T cd07399 21 DAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHDLV------------------ 82 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCcch------------------
Confidence 44566777778888999999999999988534456677788887766789999999999920
Q ss_pred ccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCcHHHHHHHHHH
Q 020182 96 VAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRV 175 (330)
Q Consensus 96 ~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~ 175 (330)
+.+||. ++++|++||+++
T Consensus 83 -------------------------------------------------~~ld~~-------------~~~~ql~WL~~~ 100 (214)
T cd07399 83 -------------------------------------------------LALEFG-------------PRDEVLQWANEV 100 (214)
T ss_pred -------------------------------------------------hhCCCC-------------CCHHHHHHHHHH
Confidence 012221 237899999996
Q ss_pred HHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHh-cCCeeEEEeccCCCCC
Q 020182 176 SEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVS-LGDIKAVFVGHDHTND 254 (330)
Q Consensus 176 l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~-~~~V~~v~~GH~H~n~ 254 (330)
|++. +.+++|||+|||+..... +....... .........|..|++ .++|++|||||+|...
T Consensus 101 L~~~------------~~~~~iv~~H~p~~~~~~-~~~~~~~~-----~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~ 162 (214)
T cd07399 101 LKKH------------PDRPAILTTHAYLNCDDS-RPDSIDYD-----SDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAG 162 (214)
T ss_pred HHHC------------CCCCEEEEecccccCCCC-cCcccccc-----cccccHHHHHHHHHhCCCCEEEEEccccCCCc
Confidence 6543 357899999999975332 21111000 000122345656554 5689999999999765
Q ss_pred cccCCCCe--------EEEEeCcccCCCCCCCCCCCceEEEEEecC
Q 020182 255 FCGNLNGI--------WFCYGGGIGYHGYGKAGWPRRARIILAEAG 292 (330)
Q Consensus 255 ~~~~~~Gi--------~l~~~~~tg~~~yg~~~~~~g~Rv~el~~~ 292 (330)
.. ...|+ .++..... .++| + .+.+|+++++.+
T Consensus 163 ~~-~~~~~~~~g~~v~~~~~~~q~--~~~~--g-~~~~r~~~f~~~ 202 (214)
T cd07399 163 RT-TLVSVGDAGRTVHQMLADYQG--EPNG--G-NGFLRLLEFDPD 202 (214)
T ss_pred eE-EEcccCCCCCEeeEEeecccC--CCCC--C-cceEEEEEEecC
Confidence 43 22111 12222211 1222 2 467999999964
No 12
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.84 E-value=9.5e-20 Score=166.17 Aligned_cols=180 Identities=14% Similarity=0.069 Sum_probs=104.9
Q ss_pred HHHHHHHHhcCCcEEEEcCCccCCCCcc-----c---HHHHHHHHHhHHHHc-CCCEEEEccCCCCCCCCCHHHHHHHHH
Q 020182 20 ARLLCWVLISQWIYEYHEGDNIFGSSTT-----D---VAESMIQAFGPAMEL-GLPWAAVLGNHDQESTMDREELMYFIS 90 (330)
Q Consensus 20 ~~~~~~i~~~~pD~vV~tGDli~~~~~~-----~---~~~~~~~~l~~l~~~-~iP~~~v~GNHD~~~~~~~~~l~~~~~ 90 (330)
+.+++.+...+||+||++||+++..... + .+..+.+.+...... .+||+.++||||.....+.+...+++.
T Consensus 23 ~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~ 102 (256)
T cd07401 23 TFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFDIRGNHDLFNIPSLDSENNYYR 102 (256)
T ss_pred HHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEEeCCCCCcCCCCCccchhhHHH
Confidence 4567778888999999999999876421 1 122333333322122 589999999999964432221112221
Q ss_pred hcCCcccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCC-CCCcCcCCCCcHHHH
Q 020182 91 LMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRET-VRGVRTYGYIKESQL 169 (330)
Q Consensus 91 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~-~~~~~~~g~i~~~Ql 169 (330)
. |.. ...+ .. .|+..... ...+++++|||..... .......|.+.++|+
T Consensus 103 ~--y~~-~~~~------------------~~-~~~~~~~~--------~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql 152 (256)
T cd07401 103 K--YSA-TGRD------------------GS-FSFSHTTR--------FGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLL 152 (256)
T ss_pred H--hhe-ecCC------------------Cc-cceEEEec--------CCCEEEEEEcCccCCCCCCCCceeccCCHHHH
Confidence 1 100 0010 00 12221111 1358999999986421 111123578999999
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEEecc
Q 020182 170 RWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGH 249 (330)
Q Consensus 170 ~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH 249 (330)
+||++.+++.. ..+++|||+|||+....... . ....+ +..+++..+|.++||||
T Consensus 153 ~wL~~~L~~~~-----------~~~~~IV~~HhP~~~~~~~~----~----------~~~~~-~~~ll~~~~v~~vl~GH 206 (256)
T cd07401 153 DRLEKELEKST-----------NSNYTIWFGHYPTSTIISPS----A----------KSSSK-FKDLLKKYNVTAYLCGH 206 (256)
T ss_pred HHHHHHHHhcc-----------cCCeEEEEEcccchhccCCC----c----------chhHH-HHHHHHhcCCcEEEeCC
Confidence 99999666543 34679999999985422110 0 11123 44445455799999999
Q ss_pred CCCCCc
Q 020182 250 DHTNDF 255 (330)
Q Consensus 250 ~H~n~~ 255 (330)
+|.+..
T Consensus 207 ~H~~~~ 212 (256)
T cd07401 207 LHPLGG 212 (256)
T ss_pred ccCCCc
Confidence 998665
No 13
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.82 E-value=2.8e-19 Score=166.41 Aligned_cols=193 Identities=19% Similarity=0.117 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhc--CCcEEEEcCCccCCCCcccHH---H--HHHHHHhHHHH--cCCCEEEEccCCCCCCC--C----
Q 020182 16 KLLAARLLCWVLIS--QWIYEYHEGDNIFGSSTTDVA---E--SMIQAFGPAME--LGLPWAAVLGNHDQEST--M---- 80 (330)
Q Consensus 16 ~~~~~~~~~~i~~~--~pD~vV~tGDli~~~~~~~~~---~--~~~~~l~~l~~--~~iP~~~v~GNHD~~~~--~---- 80 (330)
..+++.+++.+.+. +|||||+|||++......... . ....++..+.+ .++|++.++||||.... +
T Consensus 52 ~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~~~~~~~ 131 (296)
T cd00842 52 WRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVNQFPPNN 131 (296)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcccccCCcc
Confidence 56677777777776 899999999999988532111 1 12333333332 57999999999998643 1
Q ss_pred CHHHHHHHH-HhcCCcccccCCCCCCCcccccCCcccccccc-cceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCc
Q 020182 81 DREELMYFI-SLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGF-GNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGV 158 (330)
Q Consensus 81 ~~~~l~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~-~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~ 158 (330)
..+.+.+.+ ..+. ...+... . ..+.. +.|...+. ..+++|+|||..+......
T Consensus 132 ~~~~~~~~~~~~w~----~~l~~~~------~-----~~~~~ggYY~~~~~----------~~l~vI~Lnt~~~~~~~~~ 186 (296)
T cd00842 132 SPSWLYDALAELWK----SWLPEEA------E-----ETFKKGGYYSVPVK----------PGLRVISLNTNLYYKKNFW 186 (296)
T ss_pred cccHHHHHHHHHHH----hhcCHHH------H-----HHhhcceEEEEEcC----------CCeEEEEEeCccccccChh
Confidence 111111111 1111 0111100 0 01111 23444432 2589999999865432110
Q ss_pred C--cCCCCcHHHHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChH-HHHH
Q 020182 159 R--TYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSG-VLQT 235 (330)
Q Consensus 159 ~--~~g~i~~~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~-~l~~ 235 (330)
. ..+....+|++||+++|++.++ +...++|++|||+........ ..... +...
T Consensus 187 ~~~~~~~~~~~Ql~WL~~~L~~a~~----------~~~~v~I~~HiPp~~~~~~~~--------------~~~~~~~~~i 242 (296)
T cd00842 187 LLGSNETDPAGQLQWLEDELQEAEQ----------AGEKVWIIGHIPPGVNSYDTL--------------ENWSERYLQI 242 (296)
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHH----------CCCeEEEEeccCCCCcccccc--------------hHHHHHHHHH
Confidence 0 1234568999999998888764 357889999999976432110 01233 4444
Q ss_pred HHhcCC-eeEEEeccCCCCCccc
Q 020182 236 LVSLGD-IKAVFVGHDHTNDFCG 257 (330)
Q Consensus 236 l~~~~~-V~~v~~GH~H~n~~~~ 257 (330)
+.+.++ |.++|+||.|..++..
T Consensus 243 i~~y~~~i~~~~~GH~H~d~~~~ 265 (296)
T cd00842 243 INRYSDTIAGQFFGHTHRDEFRV 265 (296)
T ss_pred HHHHHHhhheeeecccccceEEE
Confidence 444443 7899999999877644
No 14
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.79 E-value=1e-17 Score=152.54 Aligned_cols=174 Identities=16% Similarity=0.133 Sum_probs=100.9
Q ss_pred hcCCcEEEEcCCccCCCCccc------HHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCC--HHHHHHHHHhcCCccccc
Q 020182 28 ISQWIYEYHEGDNIFGSSTTD------VAESMIQAFGPAMELGLPWAAVLGNHDQESTMD--REELMYFISLMDYSVAQV 99 (330)
Q Consensus 28 ~~~pD~vV~tGDli~~~~~~~------~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~--~~~l~~~~~~~~~~~~~~ 99 (330)
..+||+||++|||++.+.... .+++|.+++.+. ...+|+++||||||....-. ...+..|.+
T Consensus 43 ~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~-~~~~pv~~VpGNHDig~~~~~~~~~~~rf~~--------- 112 (257)
T cd08163 43 QLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPS-PGRKMVESLPGNHDIGFGNGVVLPVRQRFEK--------- 112 (257)
T ss_pred hcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCC-CccceEEEeCCCcccCCCCCCCHHHHHHHHH---------
Confidence 358999999999999885321 123344444321 12479999999999854321 111222221
Q ss_pred CCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCcHHHHHHHHHHHHHH
Q 020182 100 NPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEAL 179 (330)
Q Consensus 100 ~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~l~~l 179 (330)
.+|..+|.+.+. +++|++|||..... ...+.+..+|.+||++.++..
T Consensus 113 ------------------~Fg~~~~~~~~~-----------~~~fV~Lds~~l~~----~~~~~~~~~~~~~l~~~l~~~ 159 (257)
T cd08163 113 ------------------YFGPTSRVIDVG-----------NHTFVILDTISLSN----KDDPDVYQPPREFLHSFSAMK 159 (257)
T ss_pred ------------------HhCCCceEEEEC-----------CEEEEEEccccccC----CcccccchhHHHHHHhhhhcc
Confidence 233335665442 47999999975332 134568899999999954433
Q ss_pred HhhhcccccccCCCCceEEEEecCCCCccccccCCccccc---cccCcCCcC---ChHHHHHHHhcCCeeEEEeccCCCC
Q 020182 180 QGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQF---QEAVACSRV---NSGVLQTLVSLGDIKAVFVGHDHTN 253 (330)
Q Consensus 180 ~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~---~e~~~~~~~---n~~~l~~l~~~~~V~~v~~GH~H~n 253 (330)
. ...|+|||+|||++........+..... .++.....+ ....-+.|++.-+..+||+||+|
T Consensus 160 ~-----------~~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH-- 226 (257)
T cd08163 160 V-----------KSKPRILLTHVPLYRPPNTSCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDH-- 226 (257)
T ss_pred C-----------CCCcEEEEeccccccCCCCCCCCccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCC--
Confidence 2 4579999999999865331111100000 001111111 22333345555577999999999
Q ss_pred Cccc
Q 020182 254 DFCG 257 (330)
Q Consensus 254 ~~~~ 257 (330)
++|.
T Consensus 227 ~~C~ 230 (257)
T cd08163 227 DYCE 230 (257)
T ss_pred ccce
Confidence 5775
No 15
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.78 E-value=2.7e-17 Score=156.01 Aligned_cols=231 Identities=15% Similarity=0.117 Sum_probs=129.0
Q ss_pred HHHHHHHHHhcCCcEEEEcCCccCCCCc-c---cHHHHHHHHHhHHH-HcCCCEEEEccCCCCCCCCCHHHHHHHHHh--
Q 020182 19 AARLLCWVLISQWIYEYHEGDNIFGSST-T---DVAESMIQAFGPAM-ELGLPWAAVLGNHDQESTMDREELMYFISL-- 91 (330)
Q Consensus 19 ~~~~~~~i~~~~pD~vV~tGDli~~~~~-~---~~~~~~~~~l~~l~-~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~-- 91 (330)
++.+-+.....++||||.+||.+.++-. . ...+.|..+..+.. .+.+||+.++||||..++...+ +....+.
T Consensus 46 A~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vLGNHDy~Gn~~AQ-i~r~~~~y~ 124 (394)
T PTZ00422 46 ASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVLGQADWDGNYNAE-LLKGQNVYL 124 (394)
T ss_pred HHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhCCCeEEeCCcccccCCchhh-hcccccccc
Confidence 3333344456789999999999855422 1 12334555554432 2689999999999987665432 2211000
Q ss_pred -------cCCccc-ccCCCCCCCcccccCCcccccccccceEE--EeeCCCC----CCCCCcceeEEEEEeCCCCCCCCC
Q 020182 92 -------MDYSVA-QVNPPAEDPSNLAKGGVMEKIDGFGNYDL--RVYGPPG----SHLANSSILNLFFLDSGDRETVRG 157 (330)
Q Consensus 92 -------~~~~~~-~~~p~~~~~~~~~~~~~~~~~~g~~nY~~--~v~~~~~----~~~~~~~~~~l~~LDS~~~~~~~~ 157 (330)
..|+-. ...| .| ..+. ..|.+ ......+ ........+.|+|+||..-...
T Consensus 125 ~~~~~~~~~y~~~~~~~~-RW------------~mP~-~yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~-- 188 (394)
T PTZ00422 125 NGHGQTDIEYDSNNDIYP-KW------------IMPN-YWYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWILSSS-- 188 (394)
T ss_pred ccccccccccccccccCC-Cc------------cCCc-hhheeeeeeecccccccccccCCCCEEEEEEEECchhccc--
Confidence 000000 0001 01 0111 01221 1100000 0000124578999999643321
Q ss_pred cCcCCCCcHHHHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHH
Q 020182 158 VRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLV 237 (330)
Q Consensus 158 ~~~~g~i~~~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~ 237 (330)
-.+....++|++||+++|+..+ +..+++||+.|||++......... .-...+..|+
T Consensus 189 -~~~~~~~~~~w~~L~~~L~~a~----------k~a~WkIVvGHhPIySsG~hg~~~-------------~L~~~L~PLL 244 (394)
T PTZ00422 189 -FPYKKVSERAWQDLKATLEYAP----------KIADYIIVVGDKPIYSSGSSKGDS-------------YLSYYLLPLL 244 (394)
T ss_pred -CCccccCHHHHHHHHHHHHhhc----------cCCCeEEEEecCceeecCCCCCCH-------------HHHHHHHHHH
Confidence 0123367899999999775332 135799999999999764321000 0023566777
Q ss_pred hcCCeeEEEeccCCCCCcccCCCCeEEEEeCcccCCCCCC----C-----CCCCceEEEEEec
Q 020182 238 SLGDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYHGYGK----A-----GWPRRARIILAEA 291 (330)
Q Consensus 238 ~~~~V~~v~~GH~H~n~~~~~~~Gi~l~~~~~tg~~~yg~----~-----~~~~g~Rv~el~~ 291 (330)
+.++|++++|||+|..++. ..+|+.++.+|+.|....+. + ....|+=.++++.
T Consensus 245 ~ky~VdlYisGHDH~lq~i-~~~gt~yIvSGaGs~~~~~~~~~~~~s~F~~~~~GF~~~~l~~ 306 (394)
T PTZ00422 245 KDAQVDLYISGYDRNMEVL-TDEGTAHINCGSGGNSGRKSIMKNSKSLFYSEDIGFCIHELNA 306 (394)
T ss_pred HHcCcCEEEEccccceEEe-cCCCceEEEeCccccccCCCCCCCCCcceecCCCCEEEEEEec
Confidence 7778999999999987764 45799999988876532211 0 1235677777763
No 16
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.7e-17 Score=157.74 Aligned_cols=234 Identities=18% Similarity=0.149 Sum_probs=151.7
Q ss_pred CCcEEEEcCCccCCCCcc-cHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCCCcc
Q 020182 30 QWIYEYHEGDNIFGSSTT-DVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPAEDPSN 108 (330)
Q Consensus 30 ~pD~vV~tGDli~~~~~~-~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~ 108 (330)
++|+|++.|||++..... ..+..|.++++|+. ..+||.++.|||+.....+. . | .+|..+-..|...+
T Consensus 174 k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~A-s~vPymv~~GNHE~d~~~~~-~---F---~~y~~Rf~mP~~~s--- 242 (452)
T KOG1378|consen 174 KPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIA-SYVPYMVCSGNHEIDWPPQP-C---F---VPYSARFNMPGNSS--- 242 (452)
T ss_pred CCcEEEEecchhhcCCCCccchHHHHhhhhhhh-ccCceEEecccccccCCCcc-c---c---cccceeeccCCCcC---
Confidence 599999999999998765 36778888899875 56999999999998764321 0 1 11211111232100
Q ss_pred cccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCcHHHHHHHHHHHHHHHhhhccccc
Q 020182 109 LAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNR 188 (330)
Q Consensus 109 ~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~l~~l~~~~~~~~~ 188 (330)
.....-.|++.+. .++|++|+|-.+... ....+|..||++.|++..+.
T Consensus 243 --------~s~~~l~YSfd~G-----------~vhfv~lsse~~~~~-------~~~~~QY~WL~~dL~~v~r~------ 290 (452)
T KOG1378|consen 243 --------ESDSNLYYSFDVG-----------GVHFVVLSTETYYNF-------LKGTAQYQWLERDLASVDRK------ 290 (452)
T ss_pred --------CCCCceeEEEeec-----------cEEEEEEeccccccc-------cccchHHHHHHHHHHHhccc------
Confidence 0011113555542 379999999765311 14579999999988777631
Q ss_pred ccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEEeccCCCCCcccCC---------
Q 020182 189 KVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFCGNL--------- 259 (330)
Q Consensus 189 ~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~--------- 259 (330)
+.+++||++|.|++...... ..+|+.. ..-...|+.|+-+.+|+++|.||.|.++...+.
T Consensus 291 ---~tPWlIv~~HrP~Y~S~~~~------~~reG~~--~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~ 359 (452)
T KOG1378|consen 291 ---KTPWLIVQGHRPMYCSSNDA------HYREGEF--ESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGW 359 (452)
T ss_pred ---CCCeEEEEecccceecCCch------hhccCcc--hhhHHHHHHHHHHhceeEEEeccceehhccchhhcceeeccC
Confidence 26899999999998765421 1233321 111235777777778999999999998753321
Q ss_pred ---------CCeEEEEeCcccC-------------CCCCCCCCCCceEEEEEecCCCCCCcccccceEEEEEccCCCCCc
Q 020182 260 ---------NGIWFCYGGGIGY-------------HGYGKAGWPRRARIILAEAGKGENGWMEVEMIKTWKRLDDQRLSK 317 (330)
Q Consensus 260 ---------~Gi~l~~~~~tg~-------------~~yg~~~~~~g~Rv~el~~~~~~~~~~~~~~~~tw~r~~~~~~~~ 317 (330)
..|.+..|.+.+- +.++ ...-|+-++++... .+...+|+|..|....+
T Consensus 360 ~~~~~~d~~aPvyI~~G~~G~~e~~~~~~~~~p~~Sa~R--~~dfG~~~L~v~N~--------TH~~~~~~~~~d~~g~~ 429 (452)
T KOG1378|consen 360 GPVHLVDGMAPIYITVGDGGNHEHLDPFSSPQPEWSAFR--EGDFGYTRLTAKNG--------THAHVHWVRNSDASGVV 429 (452)
T ss_pred CcccccCCCCCEEEEEccCCcccccCcccCCCCcccccc--cccCCeEEEEEecC--------ceEEEEEEeccCCCceE
Confidence 1233333322221 1222 23468999999842 26788999998888899
Q ss_pred eeceeeeccC
Q 020182 318 IDEQVLWEMC 327 (330)
Q Consensus 318 ~~~~~~~~~~ 327 (330)
+|.-||.+..
T Consensus 430 ~D~fwl~k~~ 439 (452)
T KOG1378|consen 430 IDSFWLIKDY 439 (452)
T ss_pred eeeEEEEccc
Confidence 9999998764
No 17
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.78 E-value=2.2e-17 Score=148.48 Aligned_cols=189 Identities=13% Similarity=-0.025 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhc--CCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCC
Q 020182 17 LLAARLLCWVLIS--QWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDY 94 (330)
Q Consensus 17 ~~~~~~~~~i~~~--~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~ 94 (330)
.+++++.+.+... +||+||++||+++..... .+.+.++.+.+...|+++|+||||... ...+.+.+.+.....
T Consensus 26 ~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~----~~~~~l~~l~~l~~~v~~V~GNHD~~~-~~~~~~~~~l~~~~~ 100 (232)
T cd07393 26 NHTEKIKENWDNVVAPEDIVLIPGDISWAMKLE----EAKLDLAWIDALPGTKVLLKGNHDYWW-GSASKLRKALEESRL 100 (232)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEcCCCccCCChH----HHHHHHHHHHhCCCCeEEEeCCccccC-CCHHHHHHHHHhcCe
Confidence 3444555544444 899999999999665321 233344444455668999999999842 234444433322110
Q ss_pred cccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeC--CCCCCC------CCcCcCCCCcH
Q 020182 95 SVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDS--GDRETV------RGVRTYGYIKE 166 (330)
Q Consensus 95 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS--~~~~~~------~~~~~~g~i~~ 166 (330)
.+ . .|..+.+ ..+.|+.++. ...... ...+..|.+.+
T Consensus 101 ~~---------------------~---~n~~~~~-----------~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (232)
T cd07393 101 AL---------------------L---FNNAYID-----------DDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFE 145 (232)
T ss_pred EE---------------------e---ccCcEEE-----------CCEEEEEEEeeCCCCCccccccccccchhHHHHHH
Confidence 00 0 0112221 1245666542 111100 00123356778
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEE
Q 020182 167 SQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVF 246 (330)
Q Consensus 167 ~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~ 246 (330)
+|+.||+++++++... ....+.|+++|+|++.... ....+...+.+ .+|++|+
T Consensus 146 ~~l~~l~~~L~~~~~~--------~~~~~~i~~~H~p~~~~~~------------------~~~~~~~~~~~-~~v~~vl 198 (232)
T cd07393 146 RELERLELSLKAAKKR--------EKEKIKIVMLHYPPANENG------------------DDSPISKLIEE-YGVDICV 198 (232)
T ss_pred HHHHHHHHHHHHHHhC--------CCCCCEEEEECCCCcCCCC------------------CHHHHHHHHHH-cCCCEEE
Confidence 9999999988776531 1224799999999865321 11234444444 4799999
Q ss_pred eccCCCCCc----ccCCCCeEEEEeCcccC
Q 020182 247 VGHDHTNDF----CGNLNGIWFCYGGGIGY 272 (330)
Q Consensus 247 ~GH~H~n~~----~~~~~Gi~l~~~~~tg~ 272 (330)
|||.|.... .+..+||.+..+++||+
T Consensus 199 ~GH~H~~~~~~~~~~~~~gi~~~~~~~~~~ 228 (232)
T cd07393 199 YGHLHGVGRDRAINGERGGIRYQLVSADYL 228 (232)
T ss_pred ECCCCCCcccccccceECCEEEEEEcchhc
Confidence 999998653 33579999999999987
No 18
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.72 E-value=4.6e-16 Score=148.46 Aligned_cols=134 Identities=17% Similarity=0.167 Sum_probs=76.6
Q ss_pred eEEEEEeCCCCCCCCC--cCcCCCCcHHHHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCc-cccccCCcc-c
Q 020182 142 LNLFFLDSGDRETVRG--VRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPET-PQLYYQNIV-G 217 (330)
Q Consensus 142 ~~l~~LDS~~~~~~~~--~~~~g~i~~~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~-~~~~~~~~~-G 217 (330)
+++|+|||..+..... ....|.++++|++||+++|++.. ...+.+|++|||+... ....+.... +
T Consensus 305 lrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~-----------a~~p~VVV~hHpPi~t~gi~~md~w~~~ 373 (492)
T TIGR03768 305 LKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQ-----------ADGQLMIIAAHIPIAVSPIGSEMEWWLG 373 (492)
T ss_pred eEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCc-----------CCCceEEEEeCCCcccCCccchhhhccc
Confidence 4999999987543211 23568899999999999766553 1345455544444432 221111100 0
Q ss_pred cccccCcCCc-C-ChHHHHHHHhcCCeeEEEeccCCCCCcccC--------CCCeEEEEeCcccCCCCCCCCCCCceEEE
Q 020182 218 QFQEAVACSR-V-NSGVLQTLVSLGDIKAVFVGHDHTNDFCGN--------LNGIWFCYGGGIGYHGYGKAGWPRRARII 287 (330)
Q Consensus 218 ~~~e~~~~~~-~-n~~~l~~l~~~~~V~~v~~GH~H~n~~~~~--------~~Gi~l~~~~~tg~~~yg~~~~~~g~Rv~ 287 (330)
...-...+.. . ..+++..|..+++|.++||||.|.+..... -+|.|-+-+.+ ..+|+.-+|+|
T Consensus 374 ~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn~v~a~~~p~~~~pe~gFWeveTaS-------l~DfPQq~R~~ 446 (492)
T TIGR03768 374 AADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLNTVKAFPSPDPARPEYGFWQVETAS-------LRDFPQQFRTF 446 (492)
T ss_pred cccccccccccccHHHHHHHHhcCCCeEEEEcCCcccccccccCCCCCCCCcCceEEEeehh-------hccchhhceEE
Confidence 0000000111 1 135666677888999999999998754210 12333333221 24789999999
Q ss_pred EEecCC
Q 020182 288 LAEAGK 293 (330)
Q Consensus 288 el~~~~ 293 (330)
||..+.
T Consensus 447 Ei~~n~ 452 (492)
T TIGR03768 447 EIYLNS 452 (492)
T ss_pred EEEeCC
Confidence 998543
No 19
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.72 E-value=1.2e-15 Score=140.70 Aligned_cols=193 Identities=21% Similarity=0.212 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCC
Q 020182 15 RKLLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDY 94 (330)
Q Consensus 15 ~~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~ 94 (330)
....+.+++..+...+||+||+||||++.+. .+.++.+.++++ ......|++++|||||........ +... +
T Consensus 18 ~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~-~~~~~~~~~~l~-~~~~~~~~~~vpGNHD~~~~~~~~-~~~~---~-- 89 (301)
T COG1409 18 SEELLEALLAAIEQLKPDLLVVTGDLTNDGE-PEEYRRLKELLA-RLELPAPVIVVPGNHDARVVNGEA-FSDQ---F-- 89 (301)
T ss_pred hHHHHHHHHHHHhcCCCCEEEEccCcCCCCC-HHHHHHHHHHHh-hccCCCceEeeCCCCcCCchHHHH-hhhh---h--
Confidence 3556677788888899999999999999963 455666666665 225788999999999987543221 1110 0
Q ss_pred cccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCcHHHHHHHHH
Q 020182 95 SVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHR 174 (330)
Q Consensus 95 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~ 174 (330)
.... .+...... .+.++++.+||..... ..|.+..+|+.||++
T Consensus 90 ----~~~~--------------------~~~~~~~~--------~~~~~~~~~d~~~~~~-----~~G~~~~~q~~~l~~ 132 (301)
T COG1409 90 ----FNRY--------------------AVLVGACS--------SGGWRVIGLDSSVPGV-----PLGRLGAEQLDWLEE 132 (301)
T ss_pred ----cccC--------------------cceEeecc--------CCceEEEEecCCCCCC-----CCCEECHHHHHHHHH
Confidence 0000 01111111 0357999999987652 457899999999999
Q ss_pred HHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCC-hHHHHHHHhcCC-eeEEEeccCCC
Q 020182 175 VSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVN-SGVLQTLVSLGD-IKAVFVGHDHT 252 (330)
Q Consensus 175 ~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n-~~~l~~l~~~~~-V~~v~~GH~H~ 252 (330)
.+++... .....+++++|||++...... ... . ..+ ......+...++ |++|++||.|.
T Consensus 133 ~l~~~~~---------~~~~~~v~~~hh~~~~~~~~~-~~~------~----l~~~~~~~~~~~~~~~~v~~vl~GH~H~ 192 (301)
T COG1409 133 ALAAAPE---------RAKDTVVVLHHHPLPSPGTGV-DRV------A----LRDAGELLDVLIAHGNDVRLVLSGHIHL 192 (301)
T ss_pred HHHhCcc---------ccCceEEEecCCCCCCCCCcc-cee------e----eecchhHHHHHHhcCCceEEEEeCcccc
Confidence 6554431 001134555555555432211 100 0 123 345555666655 99999999997
Q ss_pred CC-cccCCCCeEEE-----EeCcccC
Q 020182 253 ND-FCGNLNGIWFC-----YGGGIGY 272 (330)
Q Consensus 253 n~-~~~~~~Gi~l~-----~~~~tg~ 272 (330)
.. ......+..+. +++.++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (301)
T COG1409 193 AAQTVYQLNGTRLSDLLVGAGPATCS 218 (301)
T ss_pred cccccceeCCeeeeecccccCCccce
Confidence 62 44566666665 5555554
No 20
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.71 E-value=2.1e-16 Score=142.66 Aligned_cols=188 Identities=13% Similarity=0.010 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCCccc
Q 020182 18 LAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDYSVA 97 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~~~~ 97 (330)
.+.++++.+.+.++|+||++||+++.. ...++.+..+.+ ..++|+++++||||.......+++.+... +..+
T Consensus 20 ~l~~~~~~~~~~~~d~vv~~GDl~~~~--~~~~~~~~~l~~---~~~~pv~~v~GNHD~~~~~~~~~~~~~~~--~~~l- 91 (239)
T TIGR03729 20 MLETLAQYLKKQKIDHLHIAGDISNDF--QRSLPFIEKLQE---LKGIKVTFNAGNHDMLKDLTYEEIESNDS--PLYL- 91 (239)
T ss_pred HHHHHHHHHHhcCCCEEEECCccccch--hhHHHHHHHHHH---hcCCcEEEECCCCCCCCCCCHHHHHhccc--hhhh-
Confidence 466777878788999999999999864 222222322222 15689999999999864444443322110 0000
Q ss_pred ccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEe--------------------------CCC
Q 020182 98 QVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLD--------------------------SGD 151 (330)
Q Consensus 98 ~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LD--------------------------S~~ 151 (330)
. . .+. .+.. ..|+|+.++ +..
T Consensus 92 --~-~--------------------~~~-~~~~---------~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (239)
T TIGR03729 92 --H-N--------------------RFI-DIPN---------TQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRI 138 (239)
T ss_pred --c-c--------------------ccc-ccCC---------CceEEEeeccceecccccccCHHHHHHhhhcEEeeccc
Confidence 0 0 000 0000 113333333 211
Q ss_pred CCCCCCcCcCCCCcHHHHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCcccc-ccCCccccccccCcCCcCCh
Q 020182 152 RETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQL-YYQNIVGQFQEAVACSRVNS 230 (330)
Q Consensus 152 ~~~~~~~~~~g~i~~~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~-~~~~~~G~~~e~~~~~~~n~ 230 (330)
. .....+.+.++|++||++.+++. ...++|+++||||...... .... ..+.. .. ...++
T Consensus 139 ~----~~~~~~~~~~~~l~~l~~~l~~~------------~~~~~ivvtH~pP~~~~~~~~~~~--~~~~~-~~-~~~~s 198 (239)
T TIGR03729 139 K----RPMSDPERTAIVLKQLKKQLNQL------------DNKQVIFVTHFVPHRDFIYVPMDH--RRFDM-FN-AFLGS 198 (239)
T ss_pred C----CCCChHHHHHHHHHHHHHHHHhc------------CCCCEEEEEcccchHHHhcCCCCC--cchhh-hh-hccCh
Confidence 0 01134668899999999966544 2467999999998542110 0000 00000 00 12344
Q ss_pred HHHHHHHhcCCeeEEEeccCCCCCcccCCCCeEEEE
Q 020182 231 GVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCY 266 (330)
Q Consensus 231 ~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~Gi~l~~ 266 (330)
..+..+++..+|++++|||.|........+|+.++.
T Consensus 199 ~~l~~li~~~~v~~~i~GH~H~~~~~~~i~~~~~~~ 234 (239)
T TIGR03729 199 QHFGQLLVKYEIKDVIFGHLHRRFGPLTIGGTTYHN 234 (239)
T ss_pred HHHHHHHHHhCCCEEEECCccCCCCCEEECCEEEEe
Confidence 455555555589999999999753222347877654
No 21
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.68 E-value=1.2e-15 Score=131.87 Aligned_cols=168 Identities=14% Similarity=0.117 Sum_probs=98.1
Q ss_pred HHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCCcccccCCCC
Q 020182 24 CWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPA 103 (330)
Q Consensus 24 ~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~~~~~~~p~~ 103 (330)
..+...+||+||++||+++.+.. +.+..+ +.+.+.++|+++++||||... +.+... +.. .
T Consensus 17 ~~~~~~~~D~vv~~GDl~~~~~~-~~~~~~----~~l~~~~~p~~~v~GNHD~~~------~~~~~~--~~~---~---- 76 (188)
T cd07392 17 IILKAEEADAVIVAGDITNFGGK-EAAVEI----NLLLAIGVPVLAVPGNCDTPE------ILGLLT--SAG---L---- 76 (188)
T ss_pred HHhhccCCCEEEECCCccCcCCH-HHHHHH----HHHHhcCCCEEEEcCCCCCHH------HHHhhh--cCc---E----
Confidence 34556789999999999998743 223223 444567899999999999632 111110 000 0
Q ss_pred CCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCcHHHHHHHHHHHHHHHhhh
Q 020182 104 EDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQK 183 (330)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~l~~l~~~~ 183 (330)
...+ ..+.+ ..+.|+.+++...... ...+.++++|++|+ + .+..
T Consensus 77 -------------~~~~---~~~~~-----------~~~~~~g~~~~~~~~~---~~~~~~~~~~l~~~-~---~l~~-- 120 (188)
T cd07392 77 -------------NLHG---KVVEV-----------GGYTFVGIGGSNPTPF---NTPIELSEEEIVSD-G---RLNN-- 120 (188)
T ss_pred -------------ecCC---CEEEE-----------CCEEEEEeCCCCCCCC---CCccccCHHHHHHh-h---hhhc--
Confidence 0111 12222 1378999987543211 23456889999999 3 2332
Q ss_pred cccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEEeccCCCCCcccCCCCeE
Q 020182 184 QDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIW 263 (330)
Q Consensus 184 ~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~Gi~ 263 (330)
....+.|+++|+|+... +.+.... . ...+...+..+++..++++++|||.|........++.+
T Consensus 121 -------~~~~~~ilv~H~pp~~~---~~d~~~~----~---~~~g~~~l~~li~~~~~~~~l~GH~H~~~~~~~~~~~~ 183 (188)
T cd07392 121 -------LLAKNLILVTHAPPYGT---AVDRVSG----G---FHVGSKAIRKFIEERQPLLCICGHIHESRGVDKIGNTL 183 (188)
T ss_pred -------cCCCCeEEEECCCCcCC---cccccCC----C---CccCCHHHHHHHHHhCCcEEEEeccccccceeeeCCeE
Confidence 13578999999999752 1111100 0 01234556666655679999999999753222345544
Q ss_pred E
Q 020182 264 F 264 (330)
Q Consensus 264 l 264 (330)
+
T Consensus 184 ~ 184 (188)
T cd07392 184 V 184 (188)
T ss_pred E
Confidence 3
No 22
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.2e-14 Score=128.86 Aligned_cols=193 Identities=20% Similarity=0.208 Sum_probs=112.2
Q ss_pred HhcCCcEEEEcCCccCCCCcc-----cHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCCcccccCC
Q 020182 27 LISQWIYEYHEGDNIFGSSTT-----DVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNP 101 (330)
Q Consensus 27 ~~~~pD~vV~tGDli~~~~~~-----~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~~~~~~~p 101 (330)
.+...||||-|||.+++.+.. ..++.|..+... -.+..|||.+.||||..++.. .|+...++.+... ++-|
T Consensus 72 e~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~-pSLQkpWy~vlGNHDyrGnV~-AQls~~l~~~d~R--W~c~ 147 (336)
T KOG2679|consen 72 EKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTA-PSLQKPWYSVLGNHDYRGNVE-AQLSPVLRKIDKR--WICP 147 (336)
T ss_pred HhccceEEEecCCcccccCCCCCCChhHHhhhhhcccC-cccccchhhhccCccccCchh-hhhhHHHHhhccc--eecc
Confidence 345679999999999988543 234455555431 145679999999999998764 4465555443221 1112
Q ss_pred CCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCC-----CCcCcCCCCcHHHHHHHHHHH
Q 020182 102 PAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETV-----RGVRTYGYIKESQLRWLHRVS 176 (330)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~-----~~~~~~g~i~~~Ql~WL~~~l 176 (330)
+.+ =+....++... .....+++|+-..... .+...--.+...++.||+..|
T Consensus 148 rsf---------------~~~ae~ve~f~---------v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~~le~~L 203 (336)
T KOG2679|consen 148 RSF---------------YVDAEIVEMFF---------VDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALLSWLEVAL 203 (336)
T ss_pred cHH---------------hhcceeeeeec---------cccccchhhheecccccccccccCChHHHHHHHHHHHHHHHH
Confidence 110 00000111111 0122333333211000 000001125678899999965
Q ss_pred HHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEEeccCCCCCcc
Q 020182 177 EALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFC 256 (330)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH~H~n~~~ 256 (330)
++. ..++.||..|||+..........+ -.+.+..|++..+|.+++|||||.-++.
T Consensus 204 ~~S------------~a~wkiVvGHh~i~S~~~HG~T~e-------------L~~~LlPiL~~n~VdlY~nGHDHcLQhi 258 (336)
T KOG2679|consen 204 KAS------------RAKWKIVVGHHPIKSAGHHGPTKE-------------LEKQLLPILEANGVDLYINGHDHCLQHI 258 (336)
T ss_pred HHh------------hcceEEEecccceehhhccCChHH-------------HHHHHHHHHHhcCCcEEEecchhhhhhc
Confidence 554 467999999999987644321110 0234556777778999999999986654
Q ss_pred cC-CCCeEEEEeCcccC
Q 020182 257 GN-LNGIWFCYGGGIGY 272 (330)
Q Consensus 257 ~~-~~Gi~l~~~~~tg~ 272 (330)
.. ..||.++..|+.+.
T Consensus 259 s~~e~~iqf~tSGagSk 275 (336)
T KOG2679|consen 259 SSPESGIQFVTSGAGSK 275 (336)
T ss_pred cCCCCCeeEEeeCCccc
Confidence 44 68899988776655
No 23
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.54 E-value=2.4e-14 Score=119.26 Aligned_cols=60 Identities=20% Similarity=0.134 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCC
Q 020182 19 AARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQES 78 (330)
Q Consensus 19 ~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~ 78 (330)
...+.......+||+||++||+++.+...................++|+++++||||...
T Consensus 20 ~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 20 FRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYS 79 (200)
T ss_dssp HHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHH
T ss_pred HHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccce
Confidence 455556677889999999999999986432221111123344568899999999999864
No 24
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.44 E-value=2.2e-12 Score=114.44 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEcCCccCCCCcc-cHHHHHHHHHhHHHHcCCCEEEEccCCCCCCC
Q 020182 12 WQLRKLLAARLLCWVLISQWIYEYHEGDNIFGSSTT-DVAESMIQAFGPAMELGLPWAAVLGNHDQEST 79 (330)
Q Consensus 12 ~~~~~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~-~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~ 79 (330)
......+++++++.+.+.+||+||++||+++..... .....+.+.+..+.+.++|+++++||||....
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~GNHD~~~~ 91 (223)
T cd00840 23 REDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVFIIAGNHDSPSR 91 (223)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEecCCCCCccc
Confidence 344567888888888899999999999999987422 22334555555544458999999999998754
No 25
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.41 E-value=3.4e-12 Score=105.87 Aligned_cols=56 Identities=21% Similarity=0.055 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCC
Q 020182 19 AARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHD 75 (330)
Q Consensus 19 ~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD 75 (330)
++++++.+...+||+|+++||+++.+. .+.+..+.++++.+....+|+++++||||
T Consensus 24 l~~~~~~~~~~~~d~vi~~GDl~~~~~-~~~~~~~~~~~~~l~~~~~~~~~v~GNHD 79 (144)
T cd07400 24 LDRLLAEIKALDPDLVVITGDLTQRGL-PEEFEEAREFLDALPAPLEPVLVVPGNHD 79 (144)
T ss_pred HHHHHHHHhccCCCEEEECCCCCCCCC-HHHHHHHHHHHHHccccCCcEEEeCCCCe
Confidence 566778888899999999999999874 34455566666665444469999999998
No 26
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.40 E-value=2.3e-12 Score=109.64 Aligned_cols=64 Identities=17% Similarity=0.013 Sum_probs=42.3
Q ss_pred CceEEEEecCCCCccccccCCccccccccCcCCcCC---hHHHHHHHhcCCeeEEEeccCCCCCcccCCCCeEEEEeC
Q 020182 194 LPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVN---SGVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYGG 268 (330)
Q Consensus 194 ~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n---~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~Gi~l~~~~ 268 (330)
+++|||+||||......+.+.. + ..+ ...+..+.+.++|++++|||.|.+. ....+|+.++..|
T Consensus 97 ~~~vv~~HhpP~~~~~~~~~~~-~---------~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~-~~~~~g~~~~~np 163 (166)
T cd07404 97 GKTVVVTHHAPSPLSLAPQYGD-S---------LVNAAFAVDLDDLILADPIDLWIHGHTHFNF-DYRIGGTRVLSNQ 163 (166)
T ss_pred CCEEEEeCCCCCccccCccccC-C---------CcchhhhhccHhHHhhcCCCEEEECCccccc-eEEECCEEEEecC
Confidence 5899999999987644332111 0 112 2234455566789999999999864 4567888776654
No 27
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.40 E-value=3.6e-11 Score=107.12 Aligned_cols=168 Identities=15% Similarity=0.088 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCCc
Q 020182 16 KLLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDYS 95 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~~ 95 (330)
...++++++.+.+.++|+||++||+++.+...+ .+..+++.+.+.++|+++++||||.. + .+.+.+ .+.-
T Consensus 17 ~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~---~~~~~l~~l~~l~~pv~~V~GNhD~~--v-~~~l~~---~~~~- 86 (224)
T cd07388 17 LEALEKLVGLAPETGADAIVLIGNLLPKAAKSE---DYAAFFRILGEAHLPTFYVPGPQDAP--L-WEYLRE---AYNA- 86 (224)
T ss_pred HHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHH---HHHHHHHHHHhcCCceEEEcCCCChH--H-HHHHHH---Hhcc-
Confidence 445677777777788999999999999873222 34455555556789999999999963 1 121111 1100
Q ss_pred ccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCcHHHH----HH
Q 020182 96 VAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQL----RW 171 (330)
Q Consensus 96 ~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~~~Ql----~W 171 (330)
....|... .+.+ ++ ..+. ..+.|+.|+-..... ...+++|+ .|
T Consensus 87 -~~~~p~~~------------~lh~--~~-~~~~----------g~~~~~GlGGs~~~~-------~e~sE~e~~~~~~~ 133 (224)
T cd07388 87 -ELVHPEIR------------NVHE--TF-AFWR----------GPYLVAGVGGEIADE-------GEPEEHEALRYPAW 133 (224)
T ss_pred -cccCccce------------ecCC--Ce-EEec----------CCeEEEEecCCcCCC-------CCcCHHHHhhhhhh
Confidence 00001100 1222 11 1111 125788888433221 23577773 67
Q ss_pred H-HHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEEeccC
Q 020182 172 L-HRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHD 250 (330)
Q Consensus 172 L-~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH~ 250 (330)
+ +..++.+.+. ...+.|+++|+||+...- + ...+..+..+.+..+-++++|||+
T Consensus 134 ~~~~~l~~~~~~---------~~~~~VLv~H~PP~g~g~-------~---------h~GS~alr~~I~~~~P~l~i~GHi 188 (224)
T cd07388 134 VAEYRLKALWEL---------KDYRKVFLFHTPPYHKGL-------N---------EQGSHEVAHLIKTHNPLVVLVGGK 188 (224)
T ss_pred HHHHHHHHHHhC---------CCCCeEEEECCCCCCCCC-------C---------ccCHHHHHHHHHHhCCCEEEEcCC
Confidence 5 4444445431 246889999999987521 0 124566777776667899999999
Q ss_pred C
Q 020182 251 H 251 (330)
Q Consensus 251 H 251 (330)
|
T Consensus 189 h 189 (224)
T cd07388 189 G 189 (224)
T ss_pred c
Confidence 9
No 28
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.12 E-value=8e-10 Score=98.27 Aligned_cols=60 Identities=27% Similarity=0.134 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCC
Q 020182 17 LLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQEST 79 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~ 79 (330)
..++++++.+.+.+||+|+++||+++...... +.+.++++.+ ...+|+++++||||....
T Consensus 19 ~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~--~~~~~~l~~l-~~~~~v~~v~GNHD~~~~ 78 (223)
T cd07385 19 ERLERLVEKINALKPDLVVLTGDLVDGSVDVL--ELLLELLKKL-KAPLGVYAVLGNHDYYSG 78 (223)
T ss_pred HHHHHHHHHHhccCCCEEEEcCcccCCcchhh--HHHHHHHhcc-CCCCCEEEECCCcccccC
Confidence 35677888888889999999999999874321 2344444433 246899999999998754
No 29
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.12 E-value=1.9e-09 Score=99.15 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCC
Q 020182 17 LLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQES 78 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~ 78 (330)
..++++++.+...+||+|+++||+++.....+ .+.+.+.++.+.+ ..|+++|+||||...
T Consensus 67 ~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~~-~~~~~~~L~~L~~-~~pv~~V~GNHD~~~ 126 (271)
T PRK11340 67 SLISDAIALGIEQKPDLILLGGDYVLFDMPLN-FSAFSDVLSPLAE-CAPTFACFGNHDRPV 126 (271)
T ss_pred HHHHHHHHHHHhcCCCEEEEccCcCCCCcccc-HHHHHHHHHHHhh-cCCEEEecCCCCccc
Confidence 34677788888899999999999998432222 3345556665544 479999999999754
No 30
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=99.02 E-value=9.4e-09 Score=100.91 Aligned_cols=242 Identities=16% Similarity=0.103 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHhcC--CcEEEEcCCccCCCCccc----HHHHHHHHHhHHHH--cCCCEEEEccCCCCCCC-------
Q 020182 15 RKLLAARLLCWVLISQ--WIYEYHEGDNIFGSSTTD----VAESMIQAFGPAME--LGLPWAAVLGNHDQEST------- 79 (330)
Q Consensus 15 ~~~~~~~~~~~i~~~~--pD~vV~tGDli~~~~~~~----~~~~~~~~l~~l~~--~~iP~~~v~GNHD~~~~------- 79 (330)
-+.++..++++|.... +|+|+.|||.+....-.. ....+..+.+-|.+ .++|++...||||....
T Consensus 193 P~~lies~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~ 272 (577)
T KOG3770|consen 193 PKRLIESALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGS 272 (577)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCC
Confidence 3778888888887765 589999999998873211 11222222232322 48999999999997641
Q ss_pred CCHH-HHHHHHHhcCCcccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCc
Q 020182 80 MDRE-ELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGV 158 (330)
Q Consensus 80 ~~~~-~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~ 158 (330)
.+.. ...=+++.+...+....|.... ..+..+.|+..... ++++++.||+..-......
T Consensus 273 ~~~~~~~~wly~~~~~~W~~wlp~e~~-----------~t~~kga~Y~~~~~---------~Glr~IslNt~~c~~~N~~ 332 (577)
T KOG3770|consen 273 VPKRHSQLWLYKHLAGAWSTWLPAEAK-----------ETFLKGAYYLVLVI---------DGLRLISLNTNYCSAPNFW 332 (577)
T ss_pred CcchhhhhHHHHHHHhhhhccCCHHHH-----------hhhhcCcEEEEeec---------CCceEEEecccccccccee
Confidence 1111 0000011111111112232100 11222334443322 2479999999753321100
Q ss_pred -CcCCCCcHHHHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHH
Q 020182 159 -RTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLV 237 (330)
Q Consensus 159 -~~~g~i~~~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~ 237 (330)
-....-..+|++||..+|.+.+. ++..|=+..|+|+-... ..++ -...+...+.
T Consensus 333 L~~n~tdp~~~lqWf~~~L~~ae~----------~GekVhil~HIPpG~~~----------c~~~-----ws~~f~~iv~ 387 (577)
T KOG3770|consen 333 LYANQTDPIDQLQWFVDQLQEAES----------AGEKVHILGHIPPGDGV----------CLEG-----WSINFYRIVN 387 (577)
T ss_pred eeecCCCchHHhhHHHHHHHHHHh----------cCCEEEEEEeeCCCCcc----------hhhh-----hhHHHHHHHH
Confidence 00111245779999999888874 47788999999997521 1111 1123444444
Q ss_pred hc-CCeeEEEeccCCCCCcccCC-------CCeEEEEeCcccCCCCCCCCCCCceEEEEEecCCCCCCcccccceEEEEE
Q 020182 238 SL-GDIKAVFVGHDHTNDFCGNL-------NGIWFCYGGGIGYHGYGKAGWPRRARIILAEAGKGENGWMEVEMIKTWKR 309 (330)
Q Consensus 238 ~~-~~V~~v~~GH~H~n~~~~~~-------~Gi~l~~~~~tg~~~yg~~~~~~g~Rv~el~~~~~~~~~~~~~~~~tw~r 309 (330)
+. .-|.+.|.||.|...|...+ -+|.++.+..| .|- +.-+|+|+.+++... +|. .-.++||.+
T Consensus 388 r~~~tI~gqf~GH~h~d~f~v~yde~~~~p~~v~~i~~svt---ty~--~~~p~yr~y~~~~~~---~~~-~~d~~ty~~ 458 (577)
T KOG3770|consen 388 RFRSTIAGQFYGHTHIDEFRVFYDEETGHPIAVAYIGPSVT---TYY--NKNPGYRIYAVDSTI---SFS-VPDHRTYFY 458 (577)
T ss_pred HHHHhhhhhccccCcceeEEEEeccccCCceeeeeccccce---ehh--ccCCCceecccCccc---cee-cccceEEEE
Confidence 33 23678999999987653211 11222222222 222 346899999998321 111 135789977
Q ss_pred c
Q 020182 310 L 310 (330)
Q Consensus 310 ~ 310 (330)
.
T Consensus 459 N 459 (577)
T KOG3770|consen 459 N 459 (577)
T ss_pred e
Confidence 4
No 31
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.02 E-value=1.7e-08 Score=97.48 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHH----------------------------------
Q 020182 16 KLLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAM---------------------------------- 61 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~---------------------------------- 61 (330)
..+++++++.+.+.++|+||++||+.+...+. .+.+.++++.|.
T Consensus 28 ~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps--~~~~~~~~~~lr~~~~g~~p~~~~~Lsd~~~~~~~~~~~~~ny~d~ 105 (405)
T TIGR00583 28 WNTFEEVLQIAKEQDVDMILLGGDLFHENKPS--RKSLYQVLRSLRLYCLGDKPCELEFLSDASVVFNQSAFGNVNYEDP 105 (405)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccCCCCCCC--HHHHHHHHHHHHHhhccCCccchhhccchhhhcccccccccccccc
Confidence 55788999999999999999999999998542 222322222222
Q ss_pred --HcCCCEEEEccCCCCCCC
Q 020182 62 --ELGLPWAAVLGNHDQEST 79 (330)
Q Consensus 62 --~~~iP~~~v~GNHD~~~~ 79 (330)
+.+||++++.||||....
T Consensus 106 ~~~~~iPVf~I~GNHD~p~~ 125 (405)
T TIGR00583 106 NINVAIPVFSIHGNHDDPSG 125 (405)
T ss_pred cccCCCCEEEEcCCCCCccc
Confidence 148999999999998754
No 32
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.01 E-value=6.3e-09 Score=87.86 Aligned_cols=56 Identities=20% Similarity=0.097 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHH---H--cCCCEEEEccCCCCC
Q 020182 21 RLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAM---E--LGLPWAAVLGNHDQE 77 (330)
Q Consensus 21 ~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~---~--~~iP~~~v~GNHD~~ 77 (330)
...+.+...+||+||++||+++.+.... .+.+.+.+..+. . .++|+++++||||..
T Consensus 29 ~~~~~i~~~~pd~vv~~GDl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 29 SFQTSLWLLQPDVVFVLGDLFDEGKWST-DEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCccCC-HHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 4445567789999999999998764322 122222222221 1 368999999999964
No 33
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.00 E-value=2.3e-09 Score=93.60 Aligned_cols=63 Identities=25% Similarity=0.156 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHH-----------------------HHHHHHhHHHHcCCCEEEEcc
Q 020182 16 KLLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAE-----------------------SMIQAFGPAMELGLPWAAVLG 72 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~-----------------------~~~~~l~~l~~~~iP~~~v~G 72 (330)
-..+.+++..+...+||+||++||++......+.|. .+.+++..|..+++|.+++||
T Consensus 18 ~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L~~~~~p~~~vPG 97 (255)
T PF14582_consen 18 FELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRILGELGVPVFVVPG 97 (255)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHHHCC-SEEEEE--
T ss_pred HHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHHHhcCCcEEEecC
Confidence 456778888888899999999999988873222232 345666777789999999999
Q ss_pred CCCCCC
Q 020182 73 NHDQES 78 (330)
Q Consensus 73 NHD~~~ 78 (330)
|||.+.
T Consensus 98 ~~Dap~ 103 (255)
T PF14582_consen 98 NMDAPE 103 (255)
T ss_dssp TTS-SH
T ss_pred CCCchH
Confidence 999863
No 34
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.93 E-value=1.3e-09 Score=91.04 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=52.0
Q ss_pred CceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEEeccCCCCCcccCCCCeEEEEeCcccCC
Q 020182 194 LPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYH 273 (330)
Q Consensus 194 ~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~Gi~l~~~~~tg~~ 273 (330)
.+.++++|.++.... .+...+..++...+++++++||.|.... ...+|+.+++.|+.+..
T Consensus 81 ~~~i~~~H~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~GH~H~~~~-~~~~~~~~~~~Gs~~~~ 140 (156)
T PF12850_consen 81 GFKILLSHGHPYDVQ-------------------WDPAELREILSRENVDLVLHGHTHRPQV-FKIGGIHVINPGSIGGP 140 (156)
T ss_dssp TEEEEEESSTSSSST-------------------TTHHHHHHHHHHTTSSEEEESSSSSEEE-EEETTEEEEEE-GSSS-
T ss_pred CCeEEEECCCCcccc-------------------cChhhhhhhhcccCCCEEEcCCcccceE-EEECCEEEEECCcCCCC
Confidence 467888998776531 1233444555566899999999997654 34789999998888765
Q ss_pred CCCCCCCCCceEEEEEe
Q 020182 274 GYGKAGWPRRARIILAE 290 (330)
Q Consensus 274 ~yg~~~~~~g~Rv~el~ 290 (330)
..+ + ++++-|++++
T Consensus 141 ~~~--~-~~~~~i~~~~ 154 (156)
T PF12850_consen 141 RHG--D-QSGYAILDIE 154 (156)
T ss_dssp SSS--S-SEEEEEEEET
T ss_pred CCC--C-CCEEEEEEEe
Confidence 554 2 7899999986
No 35
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.88 E-value=3e-07 Score=82.41 Aligned_cols=47 Identities=30% Similarity=0.165 Sum_probs=34.3
Q ss_pred HHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCC
Q 020182 24 CWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQEST 79 (330)
Q Consensus 24 ~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~ 79 (330)
+.+...+||+||++||+++.. .++++.+.+...|+++++||||....
T Consensus 19 ~~l~~~~pD~Vl~~GDi~~~~---------~~~~~~l~~l~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 19 KALHLLQPDLVLFVGDFGNES---------VQLVRAISSLPLPKAVILGNHDAWYD 65 (238)
T ss_pred HHHhccCCCEEEECCCCCcCh---------HHHHHHHHhCCCCeEEEcCCCccccc
Confidence 345667899999999997542 13344444567899999999998654
No 36
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.85 E-value=1.5e-07 Score=85.86 Aligned_cols=197 Identities=16% Similarity=0.108 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCCc-EEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCCc
Q 020182 17 LLAARLLCWVLISQWI-YEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDYS 95 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD-~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~~ 95 (330)
..++.+++.+...+|+ ++|.+||++++.... .+..-..+++.|...+.. ++++||||+.. ..+.+.++++...+.
T Consensus 24 ~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~-~~~~g~~~~~~l~~l~~d-~~~~GNHefd~--g~~~l~~~~~~~~~~ 99 (257)
T cd07406 24 ARFATLRKQLRKENPNTLVLFSGDVLSPSLLS-TATKGKQMVPVLNALGVD-LACFGNHEFDF--GEDQLQKRLGESKFP 99 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCccch-hhcCCccHHHHHHhcCCc-EEeeccccccc--CHHHHHHHHhhCCCC
Confidence 4556777777777888 999999999876321 111123445555556655 56899999854 356666666655432
Q ss_pred ccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCcHHHHHHHHHH
Q 020182 96 VAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRV 175 (330)
Q Consensus 96 ~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~ 175 (330)
+-..+-. ....+.. ......|.+.-.+ | ..+-++-+-+............+..-.+-.+.+++.
T Consensus 100 ~L~aNi~-----~~~~~~~---~~~~~~~~i~~~~--g------~kIgviG~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 163 (257)
T cd07406 100 WLSSNVF-----DATGGGP---LPNGKESAIIERA--G------VKIGLLGLVEEEWLETLTIDPEYVRYRDYVETAREL 163 (257)
T ss_pred EEEEEEE-----ECCCCcc---cCCCCCeEEEEEC--C------eEEEEEEEecccccccccCCCCcceEcCHHHHHHHH
Confidence 2111000 0000000 0011123332222 2 234455555432110000011122223445666776
Q ss_pred HHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEEeccCCCCCc
Q 020182 176 SEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDF 255 (330)
Q Consensus 176 l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH~H~n~~ 255 (330)
++++++. ....+|+..|-+..+. ..+ +.+.++|.+|++||.|...
T Consensus 164 v~~~~~~---------~~D~iVvl~H~g~~~d----------------------~~l---a~~~~~iD~IlgGH~H~~~- 208 (257)
T cd07406 164 VDELREQ---------GADLIIALTHMRLPND----------------------KRL---AREVPEIDLILGGHDHEYI- 208 (257)
T ss_pred HHHHHhC---------CCCEEEEEeccCchhh----------------------HHH---HHhCCCCceEEecccceeE-
Confidence 6566642 4678888888865321 112 2233789999999999744
Q ss_pred ccCCCCeEEEEeC
Q 020182 256 CGNLNGIWFCYGG 268 (330)
Q Consensus 256 ~~~~~Gi~l~~~~ 268 (330)
+...+|..++.++
T Consensus 209 ~~~~~~t~vv~~g 221 (257)
T cd07406 209 LVQVGGTPIVKSG 221 (257)
T ss_pred eeeECCEEEEeCC
Confidence 4455666655543
No 37
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.82 E-value=4.7e-07 Score=86.01 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccCCCCccc--HHHHHHH-HHhHHHHcCCCEEEEccCCCCC
Q 020182 16 KLLAARLLCWVLISQWIYEYHEGDNIFGSSTTD--VAESMIQ-AFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~--~~~~~~~-~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
..+++++++.+.+.+||+||++||+++...... ....+.+ +++.+.+.++|+++++||||..
T Consensus 25 ~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 25 LKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLHVLVGNHDMY 89 (340)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEccCCCcc
Confidence 467788888899999999999999998853222 2222333 3555556799999999999974
No 38
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=98.81 E-value=5.8e-07 Score=87.30 Aligned_cols=63 Identities=21% Similarity=0.072 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccCCCCccc-HHHHHHHHHhHHHHcCCCEEEEccCCCCCC
Q 020182 16 KLLAARLLCWVLISQWIYEYHEGDNIFGSSTTD-VAESMIQAFGPAMELGLPWAAVLGNHDQES 78 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~-~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~ 78 (330)
...++++++.+.+.+||+||++||+++...... ....+.+++..+.+.++|+++++||||...
T Consensus 25 ~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~I~GNHD~~~ 88 (407)
T PRK10966 25 QAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLVVLAGNHDSVA 88 (407)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEEEEcCCCCChh
Confidence 445677888888999999999999998874332 223456667777777899999999999764
No 39
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.80 E-value=6.5e-07 Score=82.56 Aligned_cols=73 Identities=22% Similarity=0.110 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCcEEEE-cCCccCCCCcccHHH------HHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHH
Q 020182 17 LLAARLLCWVLISQWIYEYH-EGDNIFGSSTTDVAE------SMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFI 89 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD~vV~-tGDli~~~~~~~~~~------~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~ 89 (330)
..++.+++.+.+.+||.+++ +||++++.. ...+. .-..+++.|...+.. ++++||||+.. ..+.+.+.+
T Consensus 30 ~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~-~~~~~~~~~~~~~~~~~~~ln~~g~d-~~~lGNHe~d~--g~~~l~~~~ 105 (277)
T cd07410 30 ARVATLIKKARAENPNTLLIDNGDTIQGSP-LADYYAKIEDGDPHPMIAAMNALGYD-AGTLGNHEFNY--GLDYLDKVI 105 (277)
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCccCCccH-HHHHhhhcccCCCChHHHHHHhcCCC-EEeecccCccc--CHHHHHHHH
Confidence 44567777777788997666 999998763 11111 113455666677776 55789999864 345566666
Q ss_pred HhcC
Q 020182 90 SLMD 93 (330)
Q Consensus 90 ~~~~ 93 (330)
+...
T Consensus 106 ~~~~ 109 (277)
T cd07410 106 KQAN 109 (277)
T ss_pred HhCC
Confidence 5443
No 40
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.76 E-value=1e-07 Score=76.01 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=36.8
Q ss_pred HHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCC
Q 020182 24 CWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHD 75 (330)
Q Consensus 24 ~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD 75 (330)
....+.++|+||++||+++...... +..+.. +.......+|+++++||||
T Consensus 20 ~~~~~~~~~~vi~~GD~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~GNHD 69 (131)
T cd00838 20 ALAAAEKPDFVLVLGDLVGDGPDPE-EVLAAA-LALLLLLGIPVYVVPGNHD 69 (131)
T ss_pred HHhcccCCCEEEECCcccCCCCCch-HHHHHH-HHHhhcCCCCEEEeCCCce
Confidence 4456788999999999999985432 222222 3444568999999999999
No 41
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.75 E-value=2.1e-07 Score=78.33 Aligned_cols=194 Identities=17% Similarity=0.112 Sum_probs=98.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHhcCC-cEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHH
Q 020182 7 VPNLPWQLRKLLAARLLCWVLISQW-IYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREEL 85 (330)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~i~~~~p-D~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l 85 (330)
|-..||--..+...+ .+.-.-.| |.|++.||+.-.-.-++..+-| .++. ++.-.-+.+-||||.... +.
T Consensus 21 vFGe~W~gh~ekI~k--~W~~~v~~eDiVllpGDiSWaM~l~ea~~Dl-~~i~---~LPG~K~m~rGNHDYWw~-s~--- 90 (230)
T COG1768 21 VFGEPWSGHHEKIKK--HWRSKVSPEDIVLLPGDISWAMRLEEAEEDL-RFIG---DLPGTKYMIRGNHDYWWS-SI--- 90 (230)
T ss_pred ecCCcccCchHHHHH--HHHhcCChhhEEEecccchhheechhhhhhh-hhhh---cCCCcEEEEecCCccccc-hH---
Confidence 445677666655554 44444455 7999999987665433332222 3333 344446679999998643 32
Q ss_pred HHHHHhcCCcccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCc
Q 020182 86 MYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIK 165 (330)
Q Consensus 86 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~ 165 (330)
.++.+.+|-.+.-.+ +.+...||.+- +.+.|.--|....... .....|-
T Consensus 91 skl~n~lp~~l~~~n----------------~~f~l~n~aI~-------------G~RgW~s~~~~~e~~t--e~Deki~ 139 (230)
T COG1768 91 SKLNNALPPILFYLN----------------NGFELLNYAIV-------------GVRGWDSPSFDSEPLT--EQDEKIF 139 (230)
T ss_pred HHHHhhcCchHhhhc----------------cceeEeeEEEE-------------EeecccCCCCCcCccc--hhHHHHH
Confidence 333333332211111 11223344331 1233321111111000 0111122
Q ss_pred HHHHHHHHH-HHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeE
Q 020182 166 ESQLRWLHR-VSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKA 244 (330)
Q Consensus 166 ~~Ql~WL~~-~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~ 244 (330)
..++..|+. ..++++ +.....||++|+|++..... .+-+..+++.++|..
T Consensus 140 ~RE~~RLrlsa~a~l~----------k~~~~fivM~HYPP~s~~~t-------------------~~~~sevlee~rv~~ 190 (230)
T COG1768 140 LREIGRLRLSADAALP----------KGVSKFIVMTHYPPFSDDGT-------------------PGPFSEVLEEGRVSK 190 (230)
T ss_pred HHHHHHHHHHHHHhcc----------cCcCeEEEEEecCCCCCCCC-------------------CcchHHHHhhcceee
Confidence 334444444 222333 24668899999999864211 123445555778999
Q ss_pred EEeccCCCCCc----ccCCCCeEEEEeCcc
Q 020182 245 VFVGHDHTNDF----CGNLNGIWFCYGGGI 270 (330)
Q Consensus 245 v~~GH~H~n~~----~~~~~Gi~l~~~~~t 270 (330)
++.||.|.-.. .++..||.+......
T Consensus 191 ~lyGHlHgv~~p~~~~s~v~Gi~y~LvaaD 220 (230)
T COG1768 191 CLYGHLHGVPRPNIGFSNVRGIEYMLVAAD 220 (230)
T ss_pred EEeeeccCCCCCCCCcccccCceEEEEecc
Confidence 99999997542 234567776655433
No 42
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.73 E-value=7.4e-08 Score=83.72 Aligned_cols=63 Identities=13% Similarity=-0.002 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHH-----HcCCCEEEEccCCCCCCC
Q 020182 16 KLLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAM-----ELGLPWAAVLGNHDQEST 79 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~-----~~~iP~~~v~GNHD~~~~ 79 (330)
.+..+.....+...+||+||++|||++.+..... +.+.+.++.+. ..++|+++++||||....
T Consensus 28 ~yl~r~~~~a~~~l~PD~Vi~lGDL~D~G~~~~~-~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~ 95 (195)
T cd08166 28 RYLKKTYHLALNFVQPDIVIFLGDLMDEGSIAND-DEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGE 95 (195)
T ss_pred HHHHHHHHHHHhccCCCEEEEeccccCCCCCCCH-HHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCC
Confidence 3344445555667799999999999999964321 12222222221 357899999999999863
No 43
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.72 E-value=2.1e-06 Score=75.35 Aligned_cols=193 Identities=19% Similarity=0.105 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCcc--CCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCCc
Q 020182 18 LAARLLCWVLISQWIYEYHEGDNI--FGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDYS 95 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD~vV~tGDli--~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~~ 95 (330)
.+.++++.+...++|++|++||++ +-++.....+.. . ++.+...++|++++|||=|.. ++...++...-
T Consensus 18 ~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~-~-~e~l~~~~~~v~avpGNcD~~------~v~~~l~~~~~- 88 (226)
T COG2129 18 SLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELN-K-LEALKELGIPVLAVPGNCDPP------EVIDVLKNAGV- 88 (226)
T ss_pred HHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhh-H-HHHHHhcCCeEEEEcCCCChH------HHHHHHHhccc-
Confidence 455666666677899999999999 655432221111 1 566667899999999997754 22223322110
Q ss_pred ccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEe-CCCCCCCCCcCcCCCCcHHHHH-HHH
Q 020182 96 VAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLD-SGDRETVRGVRTYGYIKESQLR-WLH 173 (330)
Q Consensus 96 ~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LD-S~~~~~~~~~~~~g~i~~~Ql~-WL~ 173 (330)
.+.+ -..++. ...+..+- |+ +.. ...+..++++++. -++
T Consensus 89 ---------------------~v~~---~v~~i~-----------~~~~~G~Ggsn-~tp---~nt~~e~~E~~I~s~l~ 129 (226)
T COG2129 89 ---------------------NVHG---RVVEIG-----------GYGFVGFGGSN-PTP---FNTPREFSEDEIYSKLK 129 (226)
T ss_pred ---------------------cccc---ceEEec-----------CcEEEEecccC-CCC---CCCccccCHHHHHHHHH
Confidence 0111 011111 01122111 11 110 1133346666663 222
Q ss_pred HHHHHHHhhhcccccccCCCCce-EEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEEeccCCC
Q 020182 174 RVSEALQGQKQDSNRKVGAQLPG-LAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHT 252 (330)
Q Consensus 174 ~~l~~l~~~~~~~~~~~~~~~~~-ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH~H~ 252 (330)
+-++.. ..++ |+.+|.||+..... ...| .....+..+..+.+.-+..+.+|||+|.
T Consensus 130 ~~v~~~-------------~~~~~Il~~HaPP~gt~~d---~~~g-------~~hvGS~~vr~~ieefqP~l~i~GHIHE 186 (226)
T COG2129 130 SLVKKA-------------DNPVNILLTHAPPYGTLLD---TPSG-------YVHVGSKAVRKLIEEFQPLLGLHGHIHE 186 (226)
T ss_pred HHHhcc-------------cCcceEEEecCCCCCcccc---CCCC-------ccccchHHHHHHHHHhCCceEEEeeecc
Confidence 211121 1222 89999999876543 1112 0123456667777666789999999996
Q ss_pred CCcccCCCCeEEEEeCcccCCCCCCCCCCCceEEEEEe
Q 020182 253 NDFCGNLNGIWFCYGGGIGYHGYGKAGWPRRARIILAE 290 (330)
Q Consensus 253 n~~~~~~~Gi~l~~~~~tg~~~yg~~~~~~g~Rv~el~ 290 (330)
. .....-|=.++..|+. .+ ..+|-+++++
T Consensus 187 s-~G~d~iG~TivVNPG~----~~----~g~yA~i~l~ 215 (226)
T COG2129 187 S-RGIDKIGNTIVVNPGP----LG----EGRYALIELE 215 (226)
T ss_pred c-ccccccCCeEEECCCC----cc----CceEEEEEec
Confidence 3 2333445566666655 11 3567788887
No 44
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.66 E-value=1.2e-07 Score=85.65 Aligned_cols=50 Identities=22% Similarity=0.139 Sum_probs=37.3
Q ss_pred hcCCcEEEEcCCccCCCC----cccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 28 ISQWIYEYHEGDNIFGSS----TTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 28 ~~~pD~vV~tGDli~~~~----~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
..+||+|+++||+++... .......+.++++.+.+.++|+++++||||..
T Consensus 30 ~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNHD~~ 83 (241)
T PRK05340 30 ARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNRDFL 83 (241)
T ss_pred hccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCCchh
Confidence 468999999999997421 11223456667777777789999999999974
No 45
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.66 E-value=5.6e-07 Score=73.82 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=30.8
Q ss_pred hcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCC-EEEEccCCCC
Q 020182 28 ISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLP-WAAVLGNHDQ 76 (330)
Q Consensus 28 ~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP-~~~v~GNHD~ 76 (330)
..+||+||++||+++.+.. . .+.++++.+.+.+.| +++++||||.
T Consensus 17 ~~~~D~vi~~GD~~~~~~~-~---~~~~~~~~l~~~~~~~~~~v~GNHD~ 62 (135)
T cd07379 17 IPDGDVLIHAGDLTERGTL-E---ELQKFLDWLKSLPHPHKIVIAGNHDL 62 (135)
T ss_pred CCCCCEEEECCCCCCCCCH-H---HHHHHHHHHHhCCCCeEEEEECCCCC
Confidence 4679999999999987642 2 233334444455555 5789999994
No 46
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.64 E-value=2e-06 Score=72.48 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=37.0
Q ss_pred HHHHHHhcCCeeEEEeccCCCCCcccCCCCeEEEEeCcccCCCCCCCCCCCceEEEEEe
Q 020182 232 VLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYHGYGKAGWPRRARIILAE 290 (330)
Q Consensus 232 ~l~~l~~~~~V~~v~~GH~H~n~~~~~~~Gi~l~~~~~tg~~~yg~~~~~~g~Rv~el~ 290 (330)
.+..+....++++|++||.|.... ...+|+.++..|+.+- +.. +-+++|-+++++
T Consensus 97 ~l~~~~~~~~~d~vi~GHtH~~~~-~~~~~~~~iNpGs~~~-~~~--~~~~~~~il~~~ 151 (158)
T TIGR00040 97 VLEYLAKELGVDVLIFGHTHIPVA-EELRGILLINPGSLTG-PRN--GNTPSYAILDVD 151 (158)
T ss_pred HHHHHHhccCCCEEEECCCCCCcc-EEECCEEEEECCcccc-ccC--CCCCeEEEEEec
Confidence 344555556789999999997543 4678888876665553 222 114688888876
No 47
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.60 E-value=3.8e-06 Score=76.15 Aligned_cols=74 Identities=20% Similarity=0.108 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCCc-EEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcC
Q 020182 16 KLLAARLLCWVLISQWI-YEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMD 93 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD-~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~ 93 (330)
...++.+++.+.+.+|| ++|.+||++++....+ ......+++.+...++ -++++||||+... .+.+.+.+....
T Consensus 22 ~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~-~~~~~~~~~~l~~~g~-d~~~~GNHe~d~g--~~~l~~~~~~~~ 96 (252)
T cd00845 22 AARLATLIKEERAENENTLLLDAGDNFDGSPPST-ATKGEANIELMNALGY-DAVTIGNHEFDYG--LDALAELYKDAN 96 (252)
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCccCCCccchh-ccCCcHHHHHHHhcCC-CEEeecccccccc--HHHHHHHHHhCC
Confidence 44556777788888888 8899999999875321 1122344455555664 4568899998643 445666665544
No 48
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.57 E-value=1.6e-07 Score=80.48 Aligned_cols=68 Identities=18% Similarity=0.089 Sum_probs=47.0
Q ss_pred CchhhHHHHHHHHHHHHHhcCCcEEEEcCCccCCCCccc--HHHHHHHHHhHHHH------cCCCEEEEccCCCCC
Q 020182 10 LPWQLRKLLAARLLCWVLISQWIYEYHEGDNIFGSSTTD--VAESMIQAFGPAME------LGLPWAAVLGNHDQE 77 (330)
Q Consensus 10 ~~~~~~~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~--~~~~~~~~l~~l~~------~~iP~~~v~GNHD~~ 77 (330)
+|+.+.....+.+...+...+||+||++||+++++.... .+....+.+..+.. .++|+++++||||..
T Consensus 25 ~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 25 TRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred HHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccC
Confidence 466677777777777788899999999999999875322 12222222222211 279999999999985
No 49
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.52 E-value=2.7e-06 Score=71.20 Aligned_cols=49 Identities=22% Similarity=0.397 Sum_probs=35.5
Q ss_pred cCCeeEEEeccCCCCCcccCCCCeEEEEeCcccCCCCCCCCCCCceEEEEEec
Q 020182 239 LGDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYHGYGKAGWPRRARIILAEA 291 (330)
Q Consensus 239 ~~~V~~v~~GH~H~n~~~~~~~Gi~l~~~~~tg~~~yg~~~~~~g~Rv~el~~ 291 (330)
..++.++++||.|.... ...+|+.++..|+.|. +.. +-.+++.+++++.
T Consensus 100 ~~~~d~vi~GHtH~~~~-~~~~~~~~inpGs~~~-~~~--~~~~~~~i~~~~~ 148 (155)
T cd00841 100 EGGADVVLYGHTHIPVI-EKIGGVLLLNPGSLSL-PRG--GGPPTYAILEIDD 148 (155)
T ss_pred hcCCCEEEECcccCCcc-EEECCEEEEeCCCccC-cCC--CCCCeEEEEEecC
Confidence 44689999999998654 4568888888777764 221 2256889999873
No 50
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.49 E-value=1.4e-05 Score=74.31 Aligned_cols=71 Identities=18% Similarity=0.069 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCc-EEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHH
Q 020182 17 LLAARLLCWVLISQWI-YEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFIS 90 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD-~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~ 90 (330)
..++.+++.+.+.+++ ++|..||++++.........-..+++.|...++-. +++||||+... .+.+.+.++
T Consensus 28 arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g~Da-~t~GNHefd~G--~~~l~~~~~ 99 (288)
T cd07412 28 AYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAMGVDA-SAVGNHEFDEG--YAELLRRIN 99 (288)
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhhCCee-eeecccccccC--HHHHHHHHh
Confidence 4456667777777776 99999999976532111111124455566677665 68899998644 455665554
No 51
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.49 E-value=1.9e-05 Score=72.32 Aligned_cols=195 Identities=15% Similarity=0.082 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhc-CCcEE-EEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCC
Q 020182 17 LLAARLLCWVLIS-QWIYE-YHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDY 94 (330)
Q Consensus 17 ~~~~~~~~~i~~~-~pD~v-V~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~ 94 (330)
..++.+++.+... +||.+ |.+||++++... .....-..+++.|...+ +.++.||||+... .+.+.++++...+
T Consensus 36 ~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~-~~~~~g~~~~~~l~~~g--~da~~GNHefd~g--~~~l~~~~~~~~~ 110 (264)
T cd07411 36 AHIATLIKRIRAERNPNTLLLDGGDTWQGSGE-ALYTRGQAMVDALNALG--VDAMVGHWEFTYG--PERVRELFGRLNW 110 (264)
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCccCCChH-HhhcCChhHHHHHHhhC--CeEEecccccccC--HHHHHHHHhhCCC
Confidence 3446777777777 89966 679999988632 11112234555555544 3333399998643 4556666665543
Q ss_pred cccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCC-CCCcCcCCCCcHHHHHHHH
Q 020182 95 SVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRET-VRGVRTYGYIKESQLRWLH 173 (330)
Q Consensus 95 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~-~~~~~~~g~i~~~Ql~WL~ 173 (330)
.+-..+-. .+..+.+ . ...|.+.-.+ | ..+.++-+.+..... .+.....++.-....+.++
T Consensus 111 ~~l~aN~~-----~~~~~~~---~--~~~~~i~~~~--g------~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (264)
T cd07411 111 PFLAANVY-----DDEAGER---V--FPPYRIKEVG--G------VKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQ 172 (264)
T ss_pred CEEEEEEE-----eCCCCCc---c--cCCEEEEEEC--C------EEEEEEEeccCCcccccCcCCCCCcEECCHHHHHH
Confidence 21111100 0000111 0 1124432222 2 234566665432111 0100011222234566777
Q ss_pred HHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEEeccCCCC
Q 020182 174 RVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTN 253 (330)
Q Consensus 174 ~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH~H~n 253 (330)
+.+.++++. .....+|+..|-+..+. . +...+.++|++|++||.|..
T Consensus 173 ~~~~~~~~~--------~~~D~iI~l~H~g~~~~----------------------~---~la~~~~~iDlilgGH~H~~ 219 (264)
T cd07411 173 EVVVKLRRE--------EGVDVVVLLSHNGLPVD----------------------V---ELAERVPGIDVILSGHTHER 219 (264)
T ss_pred HHHHHHHHh--------CCCCEEEEEecCCchhh----------------------H---HHHhcCCCCcEEEeCccccc
Confidence 765555432 24678888888765321 1 11223478999999999963
Q ss_pred Ccc--cCCCCeEEEEe
Q 020182 254 DFC--GNLNGIWFCYG 267 (330)
Q Consensus 254 ~~~--~~~~Gi~l~~~ 267 (330)
... ...++..+..+
T Consensus 220 ~~~~~~~~~~t~v~~~ 235 (264)
T cd07411 220 TPKPIIAGGGTLVVEA 235 (264)
T ss_pred ccCcccccCCEEEEEc
Confidence 321 12356555443
No 52
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.47 E-value=3.7e-07 Score=88.30 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEcCCccCCCCcc-cHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCC
Q 020182 14 LRKLLAARLLCWVLISQWIYEYHEGDNIFGSSTT-DVAESMIQAFGPAMELGLPWAAVLGNHDQESTM 80 (330)
Q Consensus 14 ~~~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~-~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~ 80 (330)
..+.++..+++.+...++||||++||+.+...+. .+...+.+++..+...+||+++++||||.....
T Consensus 24 d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~~~ 91 (390)
T COG0420 24 DQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDSPSRL 91 (390)
T ss_pred HHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCchhcc
Confidence 3477888999999999999999999999997543 345566677777777889999999999987643
No 53
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.46 E-value=5.1e-07 Score=82.24 Aligned_cols=64 Identities=20% Similarity=0.199 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccCCCCccc-HHHHHHHHHhHHHHcC-CCEEEEccCCCCCCC
Q 020182 16 KLLAARLLCWVLISQWIYEYHEGDNIFGSSTTD-VAESMIQAFGPAMELG-LPWAAVLGNHDQEST 79 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~-~~~~~~~~l~~l~~~~-iP~~~v~GNHD~~~~ 79 (330)
...++++++.+.+.+||+||++||+++...... ....+.+.++.+.+.+ +|+++++||||....
T Consensus 25 ~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~~~ 90 (253)
T TIGR00619 25 KAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISGNHDSAQR 90 (253)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEccCCCChhh
Confidence 456778888888899999999999999885432 2344667777777666 999999999998643
No 54
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.46 E-value=1.9e-05 Score=72.11 Aligned_cols=71 Identities=15% Similarity=0.008 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcC
Q 020182 19 AARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMD 93 (330)
Q Consensus 19 ~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~ 93 (330)
++.+++.+.+.+++++|.+||++++.. ......-..+++.|...+..+ +++||||+.. ..+.+.++++...
T Consensus 26 l~~~i~~~~~~~~~l~l~~GD~~~gs~-~~~~~~g~~~~~~ln~~g~d~-~~~GNHefd~--G~~~l~~~~~~~~ 96 (257)
T cd07408 26 LATYKKEMNKLDNDLLVDAGDAIQGLP-ISDLDKGETIIKIMNAVGYDA-VTPGNHEFDY--GLDRLKELSKEAD 96 (257)
T ss_pred HHHHHHHHHhcCCEEEEeCCCcCCCch-hhhhcCCcHHHHHHHhcCCcE-EccccccccC--CHHHHHHHHhhCC
Confidence 455566665555679999999998863 211112234555666777777 4789999864 3556666665543
No 55
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=98.43 E-value=1.3e-06 Score=80.69 Aligned_cols=63 Identities=21% Similarity=0.069 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCH
Q 020182 18 LAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDR 82 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~ 82 (330)
...+.+..+....||+||+|||+++... ......+.++++.+. ...+++++.||||......+
T Consensus 61 ~~~~~~~~i~~~~~DlivltGD~~~~~~-~~~~~~~~~~L~~L~-~~~gv~av~GNHd~~~~~~~ 123 (284)
T COG1408 61 EKLALLIAIANELPDLIVLTGDYVDGDR-PPGVAALALFLAKLK-APLGVFAVLGNHDYGVDRSN 123 (284)
T ss_pred HHHHHHHHHHhcCCCEEEEEeeeecCCC-CCCHHHHHHHHHhhh-ccCCEEEEeccccccccccc
Confidence 4455666777888999999999999722 223445666777664 45789999999998765444
No 56
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.40 E-value=2.7e-05 Score=67.12 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=43.4
Q ss_pred HHHHHHhcCCeeEEEeccCCCCCcccCCCCeEEEEeCcccCCCCCC-C-CCCCceEEEEEecCCCCCCcccccceEEEEE
Q 020182 232 VLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYHGYGK-A-GWPRRARIILAEAGKGENGWMEVEMIKTWKR 309 (330)
Q Consensus 232 ~l~~l~~~~~V~~v~~GH~H~n~~~~~~~Gi~l~~~~~tg~~~yg~-~-~~~~g~Rv~el~~~~~~~~~~~~~~~~tw~r 309 (330)
.+..+.+..++.+|++||.|.... ...+|+.++--|+.|. +++. . ...+.|-+++++.+ .....+++
T Consensus 97 ~~~~~~~~~~~dvii~GHTH~p~~-~~~~g~~viNPGSv~~-~~~~~~~~~~~syail~~~~~---------~~~~~~~~ 165 (178)
T cd07394 97 SLAALQRQLDVDILISGHTHKFEA-FEHEGKFFINPGSATG-AFSPLDPNVIPSFVLMDIQGS---------KVVTYVYQ 165 (178)
T ss_pred HHHHHHHhcCCCEEEECCCCcceE-EEECCEEEEECCCCCC-CCCCCCCCCCCeEEEEEecCC---------eEEEEEEE
Confidence 344444456789999999997543 5667887777676663 3221 1 11346777776521 22336688
Q ss_pred ccCCC
Q 020182 310 LDDQR 314 (330)
Q Consensus 310 ~~~~~ 314 (330)
+.++.
T Consensus 166 l~~~~ 170 (178)
T cd07394 166 LIDGE 170 (178)
T ss_pred EECCc
Confidence 76654
No 57
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=98.40 E-value=9.1e-06 Score=80.23 Aligned_cols=208 Identities=13% Similarity=0.127 Sum_probs=79.6
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHh-cCCcEEEEcCCccCCCCc--------------------c---cHH-HHHH--
Q 020182 2 LSGCFVPNLPWQLRKLLAARLLCWVLI-SQWIYEYHEGDNIFGSST--------------------T---DVA-ESMI-- 54 (330)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~pD~vV~tGDli~~~~~--------------------~---~~~-~~~~-- 54 (330)
++.|+-.+.++ -.+.+.+.+ .+|||+|+.||.|+.... . +.+ ..+.
T Consensus 110 ~~SC~~~~~~~-------~~~~~~~a~~~~~D~~l~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~~~~l~~yR~~y~~~ 182 (453)
T PF09423_consen 110 FGSCQNYEDGY-------FPAYRRIAERDDPDFVLHLGDQIYEDGGGGYGNLSRRPIGRAPEPAHEAETLDDYRRRYRQY 182 (453)
T ss_dssp EE----CCC----------HHHHHHTT-S--SEEEE-S-SS----TTSS--TT---S-----SSSS--SHHHHHHHHHHH
T ss_pred EECCCCcccCh-------HHHHHhhhccCCCcEEEEeCCeeeccCCcccccccccccccccccccccccHHHHHHHHHHH
Confidence 45788876655 334445555 589999999999999842 0 111 1111
Q ss_pred ---HHHhHHHHcCCCEEEEccCCCCCCCCC--H--------HHHHH----HHHhcCCcccccCCCCCCCcccccCCcccc
Q 020182 55 ---QAFGPAMELGLPWAAVLGNHDQESTMD--R--------EELMY----FISLMDYSVAQVNPPAEDPSNLAKGGVMEK 117 (330)
Q Consensus 55 ---~~l~~l~~~~iP~~~v~GNHD~~~~~~--~--------~~l~~----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 117 (330)
.-++.+. ..+|+++++=.||+..+.. . ..+.. .++.+ ....|... +...
T Consensus 183 ~~~p~l~~~~-~~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~~~~~a~~ay----~e~~p~r~---------~~~~ 248 (453)
T PF09423_consen 183 RSDPDLRRLH-ANVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQDRRRAAYQAY----FEYQPVRN---------PDPP 248 (453)
T ss_dssp HT-HHHHHHH-HHSEEEE---STTTSTT-BTTB-STT---HHHHHHHHHHHHHHH----HHHS---G---------GG-B
T ss_pred cCCHHHHHHh-hcccEEEEccCceecccccCCccccccccccchHHHHHHHHHHH----HhhcCccC---------CCcc
Confidence 2222222 4689999999999976543 0 11110 01110 01112100 0000
Q ss_pred cccccce-EEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCC------------cCcCCCCcHHHHHHHHHHHHHHHhhhc
Q 020182 118 IDGFGNY-DLRVYGPPGSHLANSSILNLFFLDSGDRETVRG------------VRTYGYIKESQLRWLHRVSEALQGQKQ 184 (330)
Q Consensus 118 ~~g~~nY-~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~------------~~~~g~i~~~Ql~WL~~~l~~l~~~~~ 184 (330)
.....-| .+.+ + ..+.|++||+..+-.... ......+.++|.+||+++|++-
T Consensus 249 ~~~~~~y~~~~~-G---------~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~s----- 313 (453)
T PF09423_consen 249 GDQGRIYRSFRY-G---------DLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLASS----- 313 (453)
T ss_dssp TTB----EEEEE-T---------TTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH------
T ss_pred CCCCceEEEEec-C---------CceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhcC-----
Confidence 0011112 2332 2 237899999976543211 1233468999999999965543
Q ss_pred ccccccCCCCceEEEEecCCCCccccccCCcccccccc-CcCCcCChHHHHHHHhcCCee--EEEeccCCCC
Q 020182 185 DSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEA-VACSRVNSGVLQTLVSLGDIK--AVFVGHDHTN 253 (330)
Q Consensus 185 ~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~-~~~~~~n~~~l~~l~~~~~V~--~v~~GH~H~n 253 (330)
...+.||..-.|+................|. ...+....++++.|.+. +++ ++++|-.|..
T Consensus 314 -------~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~-~~~~vV~LSGDvH~~ 377 (453)
T PF09423_consen 314 -------QATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRES-GIRNVVFLSGDVHAS 377 (453)
T ss_dssp --------SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHT-T---EEEEE-SSSSE
T ss_pred -------CCcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhh-CCCCEEEEecCcchh
Confidence 2567788877776543221100000000010 00112224567777655 464 7899999974
No 58
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.38 E-value=9.9e-07 Score=75.55 Aligned_cols=66 Identities=15% Similarity=-0.004 Sum_probs=46.7
Q ss_pred chhhHHHHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHH-HhHHHHcCCCEEEEccCCCCC
Q 020182 11 PWQLRKLLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQA-FGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 11 ~~~~~~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~-l~~l~~~~iP~~~v~GNHD~~ 77 (330)
|-...+.+++++.+.+.+.+||.||++||+++...... .+....+ +..+...++|+++++||||..
T Consensus 22 p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 22 PRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLS-RQEFEEVAFLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccC-HHHHHHHHHHHhccCCCeEEEEcccCccc
Confidence 44445678888888898999999999999998764322 1112111 222335689999999999975
No 59
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.38 E-value=3.9e-05 Score=70.97 Aligned_cols=183 Identities=15% Similarity=0.078 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhcCCc-EEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCCc
Q 020182 17 LLAARLLCWVLISQWI-YEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDYS 95 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD-~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~~ 95 (330)
..++.+++.+.+..|+ ++|.+||++++.... ....-..+++.|...++... ++||||+... .+.+.++++...+.
T Consensus 35 ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~-~~~~g~~~~~~ln~~g~D~~-~lGNHefd~G--~~~l~~~~~~~~~p 110 (281)
T cd07409 35 ARVATLVKELRAENPNVLFLNAGDAFQGTLWY-TLYKGNADAEFMNLLGYDAM-TLGNHEFDDG--VEGLAPFLNNLKFP 110 (281)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCcchh-hhcCChHHHHHHHhcCCCEE-EeccccccCC--HHHHHHHHHhCCCC
Confidence 3456667777777788 667799999886321 11112344555667787765 6799999754 45565555544321
Q ss_pred ccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCcHHHHHHHHHH
Q 020182 96 VAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRV 175 (330)
Q Consensus 96 ~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~ 175 (330)
+-..+-.. ..+.. ........|.+.-.+ | ..+-++-+-+........ +..+..-.+.++.+++.
T Consensus 111 ~l~aNv~~------~~~~~-~~~~~~~p~~i~~~~--G------~kIgviG~~~~~~~~~~~-~~~~~~~~d~~~~~~~~ 174 (281)
T cd07409 111 VLSANIDT------SNEPP-LLDGLLKPSTILTVG--G------EKIGIIGYTTPDTTELSS-PGGKVKFLDEIEAAQKE 174 (281)
T ss_pred EEEEeeec------CCCcc-ccccccCCeEEEEEC--C------EEEEEEEEecCccccccc-CCCceEECCHHHHHHHH
Confidence 11111000 00000 000011234332221 2 223455554432111100 01222223456778888
Q ss_pred HHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEEeccCCCC
Q 020182 176 SEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTN 253 (330)
Q Consensus 176 l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH~H~n 253 (330)
+++++++ ....+|++.|..... +..+ ..+.++|++|++||.|..
T Consensus 175 v~~lr~~---------~~D~II~l~H~G~~~----------------------d~~l---a~~~~giD~IiggH~H~~ 218 (281)
T cd07409 175 ADKLKAQ---------GVNKIIALSHSGYEV----------------------DKEI---ARKVPGVDVIVGGHSHTF 218 (281)
T ss_pred HHHHHhc---------CCCEEEEEeccCchh----------------------HHHH---HHcCCCCcEEEeCCcCcc
Confidence 8888753 467788888976431 0111 223378999999999974
No 60
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.36 E-value=7.4e-07 Score=78.86 Aligned_cols=60 Identities=22% Similarity=0.091 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCC--cEEEEcCCccCCCCc----ccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 18 LAARLLCWVLISQW--IYEYHEGDNIFGSST----TDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 18 ~~~~~~~~i~~~~p--D~vV~tGDli~~~~~----~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
.++..++-+....+ |.+.+.||+++.=-. .+..+.+.+.+..+.+.+.|+++++||||+-
T Consensus 15 ~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Dfl 80 (237)
T COG2908 15 LTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDFL 80 (237)
T ss_pred HHHHHHHHHHhccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHHH
Confidence 34444555544444 999999999876422 2334455555556667899999999999963
No 61
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.24 E-value=4.1e-06 Score=73.99 Aligned_cols=49 Identities=20% Similarity=0.035 Sum_probs=32.6
Q ss_pred hcCCcEEEEcCCccCCCCc-----ccHHHHH-HHHHhHHHHcCCCEEEEccCCCCC
Q 020182 28 ISQWIYEYHEGDNIFGSST-----TDVAESM-IQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 28 ~~~pD~vV~tGDli~~~~~-----~~~~~~~-~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
..+||.+|++||+++.-.. ....... ..++ .+...++++++++||||..
T Consensus 28 ~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~v~~v~GNHD~~ 82 (217)
T cd07398 28 LGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALL-RLADRGTRVYYVPGNHDFL 82 (217)
T ss_pred cCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHH-HHHHCCCeEEEECCCchHH
Confidence 3589999999999975311 1112121 2333 3345789999999999975
No 62
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.11 E-value=7.5e-05 Score=77.84 Aligned_cols=214 Identities=16% Similarity=0.170 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcCCc-EEEEcCCccCCCCcccHHHH-------------HHHHHhHHHHcCCCEEEEccCCCCCCCCCHHH
Q 020182 19 AARLLCWVLISQWI-YEYHEGDNIFGSSTTDVAES-------------MIQAFGPAMELGLPWAAVLGNHDQESTMDREE 84 (330)
Q Consensus 19 ~~~~~~~i~~~~pD-~vV~tGDli~~~~~~~~~~~-------------~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~ 84 (330)
++.+++.+.++.++ ++|-.||++++..-.+.... -.-+++.|..++.-. +++||||+.. ..+.
T Consensus 71 ~AtlI~~~R~e~~ntlllD~GD~iqGspl~~~~~~~~~~~~~~~~~~~~~p~i~~mN~lgyDa-~tlGNHEFdy--G~d~ 147 (780)
T PRK09418 71 TATLVNKAREEAKNSVLFDDGDALQGTPLGDYVANKINDPKKPVDPSYTHPLYRLMNLMKYDV-ISLGNHEFNY--GLDY 147 (780)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCCCCchHHHHHhhcccccccccccccchHHHHHHhccCCCE-Eecccccccc--CHHH
Confidence 45667777767775 89999999999742221110 013555666677655 6999999864 4566
Q ss_pred HHHHHHhcCCcccccCCCCCCCcccccCCcccccccccceEEEee---CCCCCCCCCcceeEEEEEeCCCCCC--CCCcC
Q 020182 85 LMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVY---GPPGSHLANSSILNLFFLDSGDRET--VRGVR 159 (330)
Q Consensus 85 l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~---~~~~~~~~~~~~~~l~~LDS~~~~~--~~~~~ 159 (330)
|.+++....+.+-..+-...+...+ ... .......|.+.-. +.+|.. ....+-++-+=+..-.. ....
T Consensus 148 L~~~l~~a~fPvl~ANV~~~~~~~~-~~~---~~~~~~PY~I~e~~v~~~~G~~--~gvKIGiIGlttp~~~~w~~~~~- 220 (780)
T PRK09418 148 LNKVISKTEFPVINSNVYKDDKDNN-EEN---DQNYFKPYHVFEKEVEDESGQK--QKVKIGVMGFVPPQVMNWDKANL- 220 (780)
T ss_pred HHHHHhhCCCCEEEeeeeccccccc-ccc---cccccCCEEEEEeeeccccccc--CCceEEEEEeccccccccccccc-
Confidence 7776665433211111000000000 000 0000123443211 111100 01223344443211000 0000
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhc
Q 020182 160 TYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSL 239 (330)
Q Consensus 160 ~~g~i~~~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~ 239 (330)
...+.-.+-++=+++.+.+|+++ ...-+|+..|.-+...... .+ ..|.... +.+.
T Consensus 221 ~g~v~f~D~veaa~~~v~~Lr~~---------GaDvIIaLsH~G~~~d~~~-----~~---------~ena~~~--l~~v 275 (780)
T PRK09418 221 EGKVKAKDIVETAKKMVPKMKAE---------GADVIVALAHSGVDKSGYN-----VG---------MENASYY--LTEV 275 (780)
T ss_pred cCCeEECCHHHHHHHHHHHHHhc---------CCCEEEEEeccCccccccc-----cc---------chhhhHH--HhcC
Confidence 00122234455567777778753 4678999999877532110 00 1222222 4556
Q ss_pred CCeeEEEeccCCCCCcccCCCCeEEEEeC
Q 020182 240 GDIKAVFVGHDHTNDFCGNLNGIWFCYGG 268 (330)
Q Consensus 240 ~~V~~v~~GH~H~n~~~~~~~Gi~l~~~~ 268 (330)
++|++|++||.|. .+....+|+.++.++
T Consensus 276 ~gID~IlgGHsH~-~~~~~ingv~vvqaG 303 (780)
T PRK09418 276 PGVDAVLMGHSHT-EVKDVFNGVPVVMPG 303 (780)
T ss_pred CCCCEEEECCCCC-cccccCCCEEEEEcC
Confidence 8899999999996 455566787766644
No 63
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.08 E-value=0.00038 Score=64.42 Aligned_cols=53 Identities=13% Similarity=-0.040 Sum_probs=32.5
Q ss_pred HHHhcCCc-EEEEcCCccCCCCcccHH-HHHHHHHhHHHHcCCCEEEEccCCCCCC
Q 020182 25 WVLISQWI-YEYHEGDNIFGSSTTDVA-ESMIQAFGPAMELGLPWAAVLGNHDQES 78 (330)
Q Consensus 25 ~i~~~~pD-~vV~tGDli~~~~~~~~~-~~~~~~l~~l~~~~iP~~~v~GNHD~~~ 78 (330)
...+.+|+ +++..||.+++..-.... ..-..+++.|...+.-. +++||||+..
T Consensus 44 ~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~mgyDa-~tlGNHEFd~ 98 (282)
T cd07407 44 KADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIFRMMPYDL-LTIGNHELYN 98 (282)
T ss_pred HHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHHHhcCCcE-EeecccccCc
Confidence 33445676 778899999987322111 01234455555666544 6999999964
No 64
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.04 E-value=1.5e-05 Score=71.24 Aligned_cols=65 Identities=14% Similarity=-0.101 Sum_probs=47.1
Q ss_pred CchhhHHHHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 10 LPWQLRKLLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 10 ~~~~~~~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
+|-.....+++++.+.+.+.+||.||++||+.+.......++.+.+.++ ....++++++||||..
T Consensus 38 ~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~---~~~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 38 VPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIE---VTFRDLILIRGNHDAL 102 (225)
T ss_pred CChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHH---hcCCcEEEECCCCCCc
Confidence 3444456778888888888999999999999987643233334444443 4557999999999964
No 65
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.04 E-value=0.00028 Score=77.40 Aligned_cols=201 Identities=15% Similarity=0.086 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCCcEEEE-cCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhc----
Q 020182 18 LAARLLCWVLISQWIYEYH-EGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLM---- 92 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD~vV~-tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~---- 92 (330)
.++.+++.+.+.+||.+++ +||++++.. ......-..+++.|...+. -++++||||+... .+.+.++++..
T Consensus 678 r~~~~i~~~r~~~~~~l~ld~GD~~~gs~-~~~~~~g~~~~~~ln~lg~-d~~~~GNHEfd~g--~~~l~~~l~~~~~~~ 753 (1163)
T PRK09419 678 KRVTKIKEVKEENPNTILVDAGDVYQGSL-YSNLLKGLPVLKMMKEMGY-DASTFGNHEFDWG--PDVLPDWLKGGGDPK 753 (1163)
T ss_pred HHHHHHHHHHhhCCCeEEEecCCCCCCcc-hhhhcCChHHHHHHhCcCC-CEEEecccccccC--hHHHHHHHHhccccc
Confidence 4566777777888997666 999998763 2111112344555555554 4569999998654 45566665542
Q ss_pred ----------CCcccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCC--CCCCcCc
Q 020182 93 ----------DYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRE--TVRGVRT 160 (330)
Q Consensus 93 ----------~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~--~~~~~~~ 160 (330)
|+-.....- ...+.+ ......|.+.-.+ | ..+-++-+-+..-. ..+. ..
T Consensus 754 ~~~~~~~~~fp~l~aNv~~-------~~~~~~---~~~~~py~I~e~~--G------~kIgiiGltt~~~~~~~~p~-~~ 814 (1163)
T PRK09419 754 NRHQFEKPDFPFVASNIYV-------KKTGKL---VSWAKPYILVEVN--G------KKVGFIGLTTPETAYKTSPG-NV 814 (1163)
T ss_pred ccccccCCCCCEEEEEEEe-------CCCCcc---ccccCCEEEEEEC--C------EEEEEEEecccccccccCCC-Cc
Confidence 211000000 000110 0011134432221 2 23445555432111 1110 01
Q ss_pred CCCCcHHHHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcC
Q 020182 161 YGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLG 240 (330)
Q Consensus 161 ~g~i~~~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~ 240 (330)
.|.--.+.++.+++..++|+++ .....+|+..|........ .+ + ....+...+.+
T Consensus 815 ~~l~f~d~~e~~~~~v~~Lr~~--------~~~D~VV~LsH~G~~~d~~------~~---~--------~~~~~lA~~v~ 869 (1163)
T PRK09419 815 KNLEFKDPAEAAKKWVKELKEK--------EKVDAIIALTHLGSNQDRT------TG---E--------ITGLELAKKVK 869 (1163)
T ss_pred CCcEEcCHHHHHHHHHHHHHhh--------cCCCEEEEEecCCcccccc------cc---c--------cHHHHHHHhCC
Confidence 1222235567788888888732 2467899999987653211 00 0 11223334457
Q ss_pred CeeEEEeccCCCCCcccCCCCeEEEEe
Q 020182 241 DIKAVFVGHDHTNDFCGNLNGIWFCYG 267 (330)
Q Consensus 241 ~V~~v~~GH~H~n~~~~~~~Gi~l~~~ 267 (330)
+|++|+.||.|.. +....+|+.++-+
T Consensus 870 gIDvIigGHsH~~-~~~~v~~~~ivqa 895 (1163)
T PRK09419 870 GVDAIISAHTHTL-VDKVVNGTPVVQA 895 (1163)
T ss_pred CCCEEEeCCCCcc-ccccCCCEEEEeC
Confidence 8999999999964 3344567665543
No 66
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=98.03 E-value=0.00025 Score=71.72 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCCc-EEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhc
Q 020182 17 LLAARLLCWVLISQWI-YEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLM 92 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD-~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~ 92 (330)
..++.+++.+.+..|+ ++|.+||.+++.. ......=...++.|...++-. +++||||+... .+.+.++++..
T Consensus 35 a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~-~~~~~~g~~~i~~~N~~g~Da-~~lGNHEFd~G--~~~l~~~~~~~ 107 (550)
T TIGR01530 35 AALNAEINKLRAESKNALVLHAGDAIIGTL-YFTLFGGRADAALMNAAGFDF-FTLGNHEFDAG--NEGLKEFLEPL 107 (550)
T ss_pred HHHHHHHHHHHhhCCCeEEEECCCCCCCcc-chhhcCCHHHHHHHhccCCCE-EEeccccccCC--HHHHHHHHHhC
Confidence 3445666666666675 8999999998763 211111123455555666654 69999999654 55566666543
No 67
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.02 E-value=0.00078 Score=62.46 Aligned_cols=69 Identities=17% Similarity=0.075 Sum_probs=40.5
Q ss_pred HHHHHHHHHhc----CCc-EEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHh
Q 020182 19 AARLLCWVLIS----QWI-YEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISL 91 (330)
Q Consensus 19 ~~~~~~~i~~~----~pD-~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~ 91 (330)
++.+++.+.+. +++ ++|-+||++++.. ......-..+++.|...+.-.. ++||||+... .+.|.++++.
T Consensus 26 ~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~-~~~~~~g~~~~~~~n~~g~Da~-~~GNHEfD~G--~~~L~~~~~~ 99 (285)
T cd07405 26 QKTLVDGVRREVAAQGGYVLLLSGGDINTGVP-ESDLQDAEPDFRGMNLVGYDAM-AVGNHEFDNP--LEVLRQQMKW 99 (285)
T ss_pred HHHHHHHHHHHhhccCCCEEEEeCCCcCCCch-hHHhcCcchHHHHHHhhCCcEE-eecccccccC--HHHHHHHHhh
Confidence 34445554443 454 8999999997753 2111111334455566777664 7799999754 4556555543
No 68
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.02 E-value=1.6e-05 Score=71.45 Aligned_cols=48 Identities=25% Similarity=0.206 Sum_probs=36.2
Q ss_pred CCcEEEEcCCccCCC----CcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 30 QWIYEYHEGDNIFGS----STTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 30 ~pD~vV~tGDli~~~----~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
+||+|+++||+++.- ......+.+.++++.+.+.++|+++++||||..
T Consensus 30 ~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 30 KADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDFL 81 (231)
T ss_pred cCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCchh
Confidence 799999999999842 112233456666777767789999999999974
No 69
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.98 E-value=0.00024 Score=74.37 Aligned_cols=194 Identities=17% Similarity=0.187 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcCCc-EEEEcCCccCCCCcccHHHH--------HHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHH
Q 020182 18 LAARLLCWVLISQWI-YEYHEGDNIFGSSTTDVAES--------MIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYF 88 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD-~vV~tGDli~~~~~~~~~~~--------~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~ 88 (330)
.++.+++.+.++.++ ++|..||++++..-.+.... ..-+++.|..++.-. .++||||+..+ .+.|.++
T Consensus 146 RlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~i~amN~LGyDA-~tLGNHEFDyG--~d~L~~~ 222 (814)
T PRK11907 146 KTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPMYAALEALGFDA-GTLGNHEFNYG--LDYLEKV 222 (814)
T ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchHHHHHHhccCCCE-EEechhhcccC--HHHHHHH
Confidence 335666777777776 89999999999742221110 012556666677654 69999999755 4567777
Q ss_pred HHhcCCcccccCCCCCCCcccccCCcccccccccceEEEee---CCCCCCCCCcceeEEEEEeCCCCCC--CCCcCcCCC
Q 020182 89 ISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVY---GPPGSHLANSSILNLFFLDSGDRET--VRGVRTYGY 163 (330)
Q Consensus 89 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~---~~~~~~~~~~~~~~l~~LDS~~~~~--~~~~~~~g~ 163 (330)
++...+.+-..+-. ....+.+ . ...|.+.-. +.+|.. ....+-++-+=+..-.. ..... .+.
T Consensus 223 l~~a~fPvl~ANV~-----~~~~~~~---~--~~PY~I~e~~~~d~~G~~--~~vKIGiIGlvtp~~~~w~~~~l~-g~v 289 (814)
T PRK11907 223 IATANMPIVNANVL-----DPTTGDF---L--YTPYTIVTKTFTDTEGKK--VTLNIGITGIVPPQILNWDKANLE-GKV 289 (814)
T ss_pred HHhCCCCEEEeeee-----ecCCCCc---c--CCCeEEEEEEEecCCCcc--cceEEEEEEeCchhhhhccccccc-CCe
Confidence 66543321111100 0001110 0 112443211 111100 00122334432211000 00000 012
Q ss_pred CcHHHHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCee
Q 020182 164 IKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIK 243 (330)
Q Consensus 164 i~~~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~ 243 (330)
.-.+-++.+++...+|+++ ...-+|+..|.-+..... . .+ ..|... .|.+.++|+
T Consensus 290 ~f~D~veaa~~~v~~Lr~~---------GaDvIIaLsH~G~~~d~~---~--~~---------~En~~~--~LA~v~GID 344 (814)
T PRK11907 290 IVRDAVEAVRDIIPTMRAA---------GADIVLVLSHSGIGDDQY---E--VG---------EENVGY--QIASLSGVD 344 (814)
T ss_pred EECCHHHHHHHHHHHHHhc---------CCCEEEEEeCCCcccccc---c--cc---------ccchhh--HHhcCCCCC
Confidence 2235577788888888853 467899999987643210 0 00 123332 234568899
Q ss_pred EEEeccCCC
Q 020182 244 AVFVGHDHT 252 (330)
Q Consensus 244 ~v~~GH~H~ 252 (330)
+|+.||.|.
T Consensus 345 aIvgGHsH~ 353 (814)
T PRK11907 345 AVVTGHSHA 353 (814)
T ss_pred EEEECCCCC
Confidence 999999997
No 70
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.94 E-value=0.00032 Score=70.48 Aligned_cols=204 Identities=21% Similarity=0.222 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhcCCc-EEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCCcc
Q 020182 18 LAARLLCWVLISQWI-YEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDYSV 96 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD-~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~~~ 96 (330)
.++.+++.+.+..++ ++|-+||++++.....+...-...++-|...+.- +.+.|||++... .+.+.+++....+.+
T Consensus 56 ~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~yD-a~tiGNHEFd~g--~~~l~~~~~~~~fp~ 132 (517)
T COG0737 56 RIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALGYD-AMTLGNHEFDYG--LEALARLLDEAKFPV 132 (517)
T ss_pred HHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhhcCCc-EEeecccccccC--HHHHHHHHhccCCce
Confidence 445556666666664 8999999999964322212223344444455544 469999999754 556666665433321
Q ss_pred cc--cCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCC--CCCCcCcCCCCcHHHHHHH
Q 020182 97 AQ--VNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRE--TVRGVRTYGYIKESQLRWL 172 (330)
Q Consensus 97 ~~--~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~--~~~~~~~~g~i~~~Ql~WL 172 (330)
-. ..... +.+ ......|.+.-.. | ..+-++.+.+..-. ..+. ...++.-.+.++++
T Consensus 133 l~aNv~~~~------~~~-----~~~~~Py~I~~~~--g------~KIgiIG~~~~~~~~~~~~~-~~~~~~f~d~~e~~ 192 (517)
T COG0737 133 LSANVYDKN------STG-----PPFFKPYAIKEVG--G------VKIGIIGLTTPTIPTWEKPN-AIEGVTFRDPIEAA 192 (517)
T ss_pred EEeeeEecC------CCC-----ccCcCCeEEEecC--C------eEEEEEEecCCccccccccc-ccCCcEEcCHHHHH
Confidence 11 10000 000 0111124432221 2 23456666542111 1111 12344455789999
Q ss_pred HHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEEeccCCC
Q 020182 173 HRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHT 252 (330)
Q Consensus 173 ~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH~H~ 252 (330)
++.+.+++++ ...-+|+..|.++........ .. +... . +.. +.+++++.||.|.
T Consensus 193 ~~~i~elk~~---------~vD~iI~LsH~G~~~d~~~~~-~~-------------~~~~-~-~~~-~~iD~i~~GH~H~ 246 (517)
T COG0737 193 KKYIPELKGE---------GVDVIIALSHLGIEDDLELAS-EV-------------PGDV-D-VAV-PGIDLIIGGHSHT 246 (517)
T ss_pred HHHHHHHHhc---------CCCEEEEEeccCcCccccccc-cc-------------cccc-c-ccc-cCcceEeccCCcc
Confidence 9999999853 267899999998875432210 00 0000 0 000 3499999999995
Q ss_pred C----CcccCCCCeEEEEeCcc
Q 020182 253 N----DFCGNLNGIWFCYGGGI 270 (330)
Q Consensus 253 n----~~~~~~~Gi~l~~~~~t 270 (330)
. ...+..+|+.++-++.-
T Consensus 247 ~~~~~~~~~~~~~t~ivqag~~ 268 (517)
T COG0737 247 VFPGGDKPGTVNGTPIVQAGEY 268 (517)
T ss_pred cccCCcccCccCCEEEEccChh
Confidence 2 21122456666554433
No 71
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=97.91 E-value=0.00029 Score=72.48 Aligned_cols=194 Identities=16% Similarity=0.122 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhcCCc-EEEEcCCccCCCCcccHHHHH--------HHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHH
Q 020182 18 LAARLLCWVLISQWI-YEYHEGDNIFGSSTTDVAESM--------IQAFGPAMELGLPWAAVLGNHDQESTMDREELMYF 88 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD-~vV~tGDli~~~~~~~~~~~~--------~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~ 88 (330)
.++.+++.+.++.++ ++|-.||++++..-.+ +... .-+++.|..++.-. .++||||+... .+.|.++
T Consensus 56 r~atli~~~R~e~~n~llvD~GD~~qGsp~~~-~~~~~~~~~g~~~p~i~amN~lgyDa-~tlGNHEFd~G--~~~L~~~ 131 (649)
T PRK09420 56 RTASLIKAARAEAKNSVLVDNGDLIQGSPLGD-YMAAKGLKAGDVHPVYKAMNTLDYDV-GNLGNHEFNYG--LDYLKKA 131 (649)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcCCCchhhh-hhhhccccCCCcchHHHHHHhcCCcE-EeccchhhhcC--HHHHHHH
Confidence 445666777666675 8999999999874222 2111 12566666777654 69999998654 5667666
Q ss_pred HHhcCCcccccCCCCCCCcccccCCcccccccccceEEE---eeCCCCCCCCCcceeEEEEEeCCCCC--CCCCcCcCCC
Q 020182 89 ISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLR---VYGPPGSHLANSSILNLFFLDSGDRE--TVRGVRTYGY 163 (330)
Q Consensus 89 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~---v~~~~~~~~~~~~~~~l~~LDS~~~~--~~~~~~~~g~ 163 (330)
++...+.+-..+-.. ...+.+ . ...|.+. +.+.+|.. ....+-++-|=+..-. ...... ...
T Consensus 132 ~~~a~fP~l~ANv~~-----~~~~~~---~--~~py~I~e~~v~~~~G~~--~~vkIGiIGl~~p~~~~w~~~~~~-g~v 198 (649)
T PRK09420 132 LAGAKFPYVNANVID-----AKTGKP---L--FTPYLIKEKEVKDKDGKE--HTIKIGYIGFVPPQIMVWDKANLE-GKV 198 (649)
T ss_pred HhcCCCCEEEEEEEe-----cCCCCc---c--cCCeEEEEEEeeccCCCc--cceEEEEEEecCccccccccccCc-Cce
Confidence 664433211111000 000100 0 1123321 11111100 0012233333221100 000000 011
Q ss_pred CcHHHHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCee
Q 020182 164 IKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIK 243 (330)
Q Consensus 164 i~~~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~ 243 (330)
.-.+-++-+++...+|+++ ...-+|+..|..+..... ... ..|... .|.+.++|+
T Consensus 199 ~~~D~ve~a~~~v~~Lk~~---------gaDvII~LsH~G~~~d~~---~~~-----------aen~~~--~l~~v~gID 253 (649)
T PRK09420 199 TVRDITETARKYVPEMKEK---------GADIVVAIPHSGISADPY---KAM-----------AENSVY--YLSEVPGID 253 (649)
T ss_pred EECCHHHHHHHHHHHHHHc---------CCCEEEEEecCCcCCCCc---ccc-----------ccchhH--HHhcCCCCC
Confidence 2235567788888888853 467899999987743210 000 123322 245668899
Q ss_pred EEEeccCCCC
Q 020182 244 AVFVGHDHTN 253 (330)
Q Consensus 244 ~v~~GH~H~n 253 (330)
+|+.||.|..
T Consensus 254 ~Il~GHsH~~ 263 (649)
T PRK09420 254 AIMFGHSHAV 263 (649)
T ss_pred EEEeCCCCcc
Confidence 9999999963
No 72
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.86 E-value=0.005 Score=56.10 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=43.0
Q ss_pred HHHHHHHHHH-hcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcC
Q 020182 18 LAARLLCWVL-ISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMD 93 (330)
Q Consensus 18 ~~~~~~~~i~-~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~ 93 (330)
.++..+..+. +.++||+|..||.+.++.... .+..+.|.+.++-++ +.|||++... ++.++++..+
T Consensus 16 ~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~-----~~~~~~L~~~G~D~i-TlGNH~fD~g----el~~~l~~~~ 82 (255)
T cd07382 16 AVKEHLPKLKKEYKIDFVIANGENAAGGKGIT-----PKIAKELLSAGVDVI-TMGNHTWDKK----EILDFIDEEP 82 (255)
T ss_pred HHHHHHHHHHHHCCCCEEEECCccccCCCCCC-----HHHHHHHHhcCCCEE-EecccccCcc----hHHHHHhcCc
Confidence 3444444444 457899999999998873221 234445556788765 6699987653 5777766554
No 73
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.86 E-value=0.00083 Score=73.77 Aligned_cols=75 Identities=20% Similarity=0.094 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhcCCc-EEEEcCCccCCCCcccHHH--------HHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHH
Q 020182 17 LLAARLLCWVLISQWI-YEYHEGDNIFGSSTTDVAE--------SMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMY 87 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD-~vV~tGDli~~~~~~~~~~--------~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~ 87 (330)
..++.+++.+.++.|+ ++|-+||++++..-.+... .-..+++.|...+.-. +++||||+... .+.|.+
T Consensus 71 ar~at~i~~~r~~~~n~llld~GD~~qGs~l~~~~~~~~~~~~~~~~~~i~~mN~lgyDa-~~lGNHEFd~G--~~~L~~ 147 (1163)
T PRK09419 71 AQTATLIKKARKENPNTLLVDNGDLIQGNPLGEYAVKDNILFKNKTHPMIKAMNALGYDA-GTLGNHEFNYG--LDFLDG 147 (1163)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCCccCCChhhhHHhhhccccCCCcCHHHHHHhhcCccE-EeecccccccC--HHHHHH
Confidence 3456677777777888 5556999999874111100 0123455566666554 58999999654 455666
Q ss_pred HHHhcCC
Q 020182 88 FISLMDY 94 (330)
Q Consensus 88 ~~~~~~~ 94 (330)
+++...+
T Consensus 148 ~~~~a~f 154 (1163)
T PRK09419 148 TIKGANF 154 (1163)
T ss_pred HHhcCCC
Confidence 6655443
No 74
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=97.85 E-value=8.7e-05 Score=70.97 Aligned_cols=52 Identities=17% Similarity=0.065 Sum_probs=38.4
Q ss_pred HHhcCCcEEEEcCCccCCCCcc------cHHHHHHHHHhHHHHcCCCEEEEccCCCCCCC
Q 020182 26 VLISQWIYEYHEGDNIFGSSTT------DVAESMIQAFGPAMELGLPWAAVLGNHDQEST 79 (330)
Q Consensus 26 i~~~~pD~vV~tGDli~~~~~~------~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~ 79 (330)
....+||.|++.|||++.+.-. +.+++|.+++.. +.++|...+|||||....
T Consensus 89 ~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~--k~~~~~~~i~GNhDIGf~ 146 (410)
T KOG3662|consen 89 QWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGR--KGNIKVIYIAGNHDIGFG 146 (410)
T ss_pred HhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCC--CCCCeeEEeCCccccccc
Confidence 3457899999999999977432 133455555542 468999999999999764
No 75
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.84 E-value=0.001 Score=67.38 Aligned_cols=69 Identities=14% Similarity=0.035 Sum_probs=40.7
Q ss_pred HHHHHHHHhc----CCc-EEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhc
Q 020182 20 ARLLCWVLIS----QWI-YEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLM 92 (330)
Q Consensus 20 ~~~~~~i~~~----~pD-~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~ 92 (330)
+.+++.+.++ +|+ ++|..||.+++.. ......-..+++.|...++-+. ++||||+... .+.+.+++...
T Consensus 61 a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~-~s~~~~g~~~i~~mN~~g~Da~-tlGNHEFD~G--~~~L~~~~~~a 134 (551)
T PRK09558 61 KTLVDQIRKEVAAEGGSVLLLSGGDINTGVP-ESDLQDAEPDFRGMNLIGYDAM-AVGNHEFDNP--LSVLRKQEKWA 134 (551)
T ss_pred HHHHHHHHHHhhccCCCEEEEcCCccccceE-hhhhcCCchhHHHHhcCCCCEE-cccccccCcC--HHHHHHhhccC
Confidence 4445554432 555 8999999988753 2111111234555667777665 6799999765 44565555443
No 76
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.84 E-value=0.00042 Score=71.08 Aligned_cols=73 Identities=21% Similarity=0.087 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCc-EEEEcCCccCCCCcccHHHHH--------HHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHH
Q 020182 18 LAARLLCWVLISQWI-YEYHEGDNIFGSSTTDVAESM--------IQAFGPAMELGLPWAAVLGNHDQESTMDREELMYF 88 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD-~vV~tGDli~~~~~~~~~~~~--------~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~ 88 (330)
.++.+++.+.++.++ ++|-+||++++..-.+ +... .-+++.|..++.-. .++||||+... .+.|.++
T Consensus 33 r~atli~~~R~e~~n~lllD~GD~~qGsp~~~-~~~~~~~~~~~~~p~~~~mN~lgyDa-~tlGNHEFd~G--~~~L~~~ 108 (626)
T TIGR01390 33 RTATLIKQARAEVKNSVLVDNGDLIQGSPLGD-YMAAQGLKAGQMHPVYKAMNLLKYDV-GNLGNHEFNYG--LPFLKQA 108 (626)
T ss_pred HHHHHHHHHHhhCCCeEEEECCCcCCCccchh-hhhhccccCCCcChHHHHHhhcCccE-Eeccccccccc--HHHHHHH
Confidence 345666666666665 8899999999874222 2111 12445566676655 69999998654 5667776
Q ss_pred HHhcCC
Q 020182 89 ISLMDY 94 (330)
Q Consensus 89 ~~~~~~ 94 (330)
++...+
T Consensus 109 ~~~a~f 114 (626)
T TIGR01390 109 IAAAKF 114 (626)
T ss_pred HHhCCC
Confidence 665433
No 77
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.79 E-value=5.8e-05 Score=64.33 Aligned_cols=52 Identities=23% Similarity=0.144 Sum_probs=36.0
Q ss_pred HHHHHHHHHhc--CCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 19 AARLLCWVLIS--QWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 19 ~~~~~~~i~~~--~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
.+++++.+... ++|.||++||+++.+.... . ++.+.+.+.|+++++||||..
T Consensus 29 ~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~----~---~~~l~~~~~~~~~v~GNHD~~ 82 (168)
T cd07390 29 DEALIRNWNETVGPDDTVYHLGDFSFGGKAGT----E---LELLSRLNGRKHLIKGNHDSS 82 (168)
T ss_pred HHHHHHHHhhhcCCCCEEEEeCCCCCCCChHH----H---HHHHHhCCCCeEEEeCCCCch
Confidence 34555555543 6899999999999874221 1 333335668999999999964
No 78
>PRK09453 phosphodiesterase; Provisional
Probab=97.76 E-value=5.4e-05 Score=65.33 Aligned_cols=60 Identities=18% Similarity=0.065 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccCCCCccc--HHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 18 LAARLLCWVLISQWIYEYHEGDNIFGSSTTD--VAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~--~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
.++++++.+.+.++|.|+++||+++.+.... ......++++.+.+.+.|++++.||||..
T Consensus 15 ~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNhD~~ 76 (182)
T PRK09453 15 ATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNCDSE 76 (182)
T ss_pred HHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccCCcch
Confidence 4567777777789999999999997653110 00012344444556678999999999963
No 79
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=97.75 E-value=0.00021 Score=68.93 Aligned_cols=190 Identities=15% Similarity=0.153 Sum_probs=101.5
Q ss_pred HHHHHHhcCCcEEEEcCCccCCCCccc-------------------------HH-HH-----HHHHHhHHHHcCCCEEEE
Q 020182 22 LLCWVLISQWIYEYHEGDNIFGSSTTD-------------------------VA-ES-----MIQAFGPAMELGLPWAAV 70 (330)
Q Consensus 22 ~~~~i~~~~pD~vV~tGDli~~~~~~~-------------------------~~-~~-----~~~~l~~l~~~~iP~~~v 70 (330)
+.+.+.+.+|||||+.||.|+.+.... .| .+ .+.-|+.+ ...+||+++
T Consensus 160 aY~~ma~~~~D~viH~GDyIYeyg~~~~~~~~~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaa-hA~~Pwi~~ 238 (522)
T COG3540 160 AYKTMAKEEPDFVIHLGDYIYEYGPIPDEVSLNSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAA-HAAFPWIVQ 238 (522)
T ss_pred HHHHHHhcCCCEEEEcCCeeeccCCcccccccccccccccCCCCCcceeeHHHHhhHHhhhcccHHHHHh-hccCCEEEE
Confidence 345566788999999999999875320 01 01 11222222 356999999
Q ss_pred ccCCCCCCCCCHH-----------H--------HHHHHHhcCCcccccCCCCCCCcccccCCcccccccccceEEEeeCC
Q 020182 71 LGNHDQESTMDRE-----------E--------LMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGP 131 (330)
Q Consensus 71 ~GNHD~~~~~~~~-----------~--------l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~ 131 (330)
+=.|+..++.... . ...|++.+|-.+....+ .+. -|. .+.
T Consensus 239 WDDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A~qAyyE~mPiR~~~~p~-----------------~~~-lYR-~~t-- 297 (522)
T COG3540 239 WDDHEVANNWSNSIDENDSRYDEKDFVLRAAAARQAYYEHMPIRYSSLPT-----------------DGR-LYR-SFT-- 297 (522)
T ss_pred eccccccccccccccccCCCCChHHHHHHHHHHHHHHHHhCccccccCCc-----------------cce-eee-eec--
Confidence 9999988753211 1 11244545542211111 010 122 111
Q ss_pred CCCCCCCcceeEEEEEeCCCCCCC-----CC--------cCcCCCCcHHHHHHHHHHHHHHHhhhcccccccCCCCceEE
Q 020182 132 PGSHLANSSILNLFFLDSGDRETV-----RG--------VRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLA 198 (330)
Q Consensus 132 ~~~~~~~~~~~~l~~LDS~~~~~~-----~~--------~~~~g~i~~~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~iv 198 (330)
..+.+.|.+||+..+-.+ +. ......+.++|..||+..|.+.+ ..+.|+
T Consensus 298 ------yG~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~Sk------------atWnVi 359 (522)
T COG3540 298 ------YGPLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGASK------------ATWNVI 359 (522)
T ss_pred ------cccccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhhcc------------hhhhhh
Confidence 235678999999876521 00 11234588999999999666543 467777
Q ss_pred EEecCCCCcccccc---CCccccccccCcCCcCChHHHHHHHhcCCee--EEEeccCCC
Q 020182 199 FFHIPIPETPQLYY---QNIVGQFQEAVACSRVNSGVLQTLVSLGDIK--AVFVGHDHT 252 (330)
Q Consensus 199 f~H~Pl~~~~~~~~---~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~--~v~~GH~H~ 252 (330)
..-.|+-....... ....-+-....+.+....+++.-|... ++. ++++|-+|.
T Consensus 360 a~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~-~~~N~V~LtgDvH~ 417 (522)
T COG3540 360 AQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIADR-KIRNTVVLTGDVHY 417 (522)
T ss_pred hhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHhc-CCCCcEEEechhHH
Confidence 77777754322211 000000000011222223555555544 455 889999996
No 80
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=97.73 E-value=8.8e-05 Score=64.49 Aligned_cols=59 Identities=17% Similarity=0.065 Sum_probs=37.1
Q ss_pred HHHHHH-HHhcCCcEEEEcCCccCCCCccc-----HHHHHHHHHhHHH---------------HcCCCEEEEccCCCCCC
Q 020182 20 ARLLCW-VLISQWIYEYHEGDNIFGSSTTD-----VAESMIQAFGPAM---------------ELGLPWAAVLGNHDQES 78 (330)
Q Consensus 20 ~~~~~~-i~~~~pD~vV~tGDli~~~~~~~-----~~~~~~~~l~~l~---------------~~~iP~~~v~GNHD~~~ 78 (330)
+++.+. ....+||.|++.|||++.+...+ .+.+|.+++-.-. .-++|++.|+||||...
T Consensus 33 ~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~ 112 (193)
T cd08164 33 GHIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGY 112 (193)
T ss_pred HHHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCC
Confidence 444443 34579999999999998764322 1234444331100 01589999999999864
No 81
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=97.71 E-value=0.0019 Score=59.13 Aligned_cols=49 Identities=12% Similarity=0.059 Sum_probs=30.3
Q ss_pred cCCcEEEEcCCccCCCCcccH--------HHH---HHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 29 SQWIYEYHEGDNIFGSSTTDV--------AES---MIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 29 ~~pD~vV~tGDli~~~~~~~~--------~~~---~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
.++|+||++||+.......+. +.. |.+.++-.....+|+++|.||||..
T Consensus 27 ~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~GNHE~~ 86 (262)
T cd00844 27 TKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIGGNHEAS 86 (262)
T ss_pred CCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEECCCCCCH
Confidence 568999999998544322111 111 2233332334678889999999953
No 82
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.66 E-value=0.004 Score=58.57 Aligned_cols=69 Identities=19% Similarity=0.116 Sum_probs=41.8
Q ss_pred HHHHHHHHhc----CCc-EEEEcCCccCCCCcccHHH-------HHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHH
Q 020182 20 ARLLCWVLIS----QWI-YEYHEGDNIFGSSTTDVAE-------SMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMY 87 (330)
Q Consensus 20 ~~~~~~i~~~----~pD-~vV~tGDli~~~~~~~~~~-------~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~ 87 (330)
+.+++.+... .++ ++|..||++++........ .-..+++.|...+.-. +++||||+.. ..+.+.+
T Consensus 23 a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g~Da-~tlGNHEFD~--G~~~L~~ 99 (313)
T cd08162 23 SALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALGVQA-IALGNHEFDL--GTDELAD 99 (313)
T ss_pred HHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccCCcE-Eecccccccc--CHHHHHH
Confidence 3445544433 454 9999999999863211000 0124455556677665 5999999864 4566777
Q ss_pred HHHh
Q 020182 88 FISL 91 (330)
Q Consensus 88 ~~~~ 91 (330)
+++.
T Consensus 100 ~~~~ 103 (313)
T cd08162 100 LIRP 103 (313)
T ss_pred HHHh
Confidence 7665
No 83
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=97.48 E-value=0.0002 Score=64.72 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=36.7
Q ss_pred HHHHHHHHHhc-----CCcEEEEcCCccCCCCc---c----------cHHHHHHHHHhHHHHcCCCEEEEccCCCCCC
Q 020182 19 AARLLCWVLIS-----QWIYEYHEGDNIFGSST---T----------DVAESMIQAFGPAMELGLPWAAVLGNHDQES 78 (330)
Q Consensus 19 ~~~~~~~i~~~-----~pD~vV~tGDli~~~~~---~----------~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~ 78 (330)
+..+++.+... ++|.||++||+++.... . +..+.+.++++.+. .++|+++++||||...
T Consensus 19 ~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 19 FEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP-SHIKIIIIPGNHDAVR 95 (243)
T ss_pred HHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc-cCCeEEEeCCCCCccc
Confidence 34555555443 56999999999987311 0 01223344444332 3699999999999853
No 84
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.44 E-value=0.0005 Score=56.00 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=29.2
Q ss_pred EEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEEeccCCCCCc
Q 020182 197 LAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDF 255 (330)
Q Consensus 197 ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH~H~n~~ 255 (330)
++++|+|+...... ... ...+.+.+..+++..++++++|||.|.+..
T Consensus 59 Ilv~H~pp~~~~~~--~~~----------~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~ 105 (129)
T cd07403 59 ILLTHAPPAGIGDG--EDF----------AHRGFEAFLDFIDRFRPKLFIHGHTHLNYG 105 (129)
T ss_pred EEEECCCCCcCcCc--ccc----------cccCHHHHHHHHHHHCCcEEEEcCcCCCcC
Confidence 89999998643221 000 123455555554444699999999997654
No 85
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=97.38 E-value=0.025 Score=51.78 Aligned_cols=179 Identities=13% Similarity=0.075 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHh-cCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCCc
Q 020182 17 LLAARLLCWVLI-SQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDYS 95 (330)
Q Consensus 17 ~~~~~~~~~i~~-~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~~ 95 (330)
..++..+..+.+ .++||+|..||.+.++.... .+..+.|.+.++-+. +.|||.+... ++..++...+.-
T Consensus 16 ~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~-----~~~~~~L~~~GvDvi-T~GNH~~Dkg----e~~~~i~~~~~~ 85 (266)
T TIGR00282 16 KIVKNNLPQLKSKYQADLVIANGENTTHGKGLT-----LKIYEFLKQSGVNYI-TMGNHTWFQK----LILDVVINQKDL 85 (266)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCC-----HHHHHHHHhcCCCEE-EccchhccCc----HHHHHHhccccc
Confidence 344555555554 46799999999998762211 233444556888886 5599988642 454555443321
Q ss_pred ccccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCcHHHHHHHHHH
Q 020182 96 VAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRV 175 (330)
Q Consensus 96 ~~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~ 175 (330)
+ .|... .....|.+.+.+... +..+-+++=....... .+. -..-++-+++.
T Consensus 86 l---rpany----------p~~~pG~g~~i~~~n-----------G~kiaVinl~G~~fm~---~~~--~~~Pf~~~d~~ 136 (266)
T TIGR00282 86 V---RPLNF----------DTSFAGKGSLVFEFN-----------GAKIAVTNLQGTSVNL---PFK--TTNPFKVLKEL 136 (266)
T ss_pred c---ccCCC----------CCCCCCCCcEEEEEC-----------CEEEEEEECCCcccCC---ccc--cCCHHHHHHHH
Confidence 1 12110 001234333333321 1244444432221111 110 11233445555
Q ss_pred HHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEEeccCCCCCc
Q 020182 176 SEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDF 255 (330)
Q Consensus 176 l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH~H~n~~ 255 (330)
++++++ ....+||.+|---.. | ...+..+++ ++|.+|++-|.|...-
T Consensus 137 i~~lk~----------~~d~IIVd~Haeats--------------E--------K~a~~~~ld-g~vsaVvGtHtHV~Ta 183 (266)
T TIGR00282 137 INMLKK----------DCDLIFVDFHAETTS--------------E--------KNAFGMAFD-GYVTAVVGTHTHVPTA 183 (266)
T ss_pred HHhhhc----------CCCEEEEEeCCCCHH--------------H--------HHHHHHHhC-CCccEEEeCCCCCCCC
Confidence 556653 246788888842210 0 223444554 4799999999998765
Q ss_pred ccC--CCCeEEEEe
Q 020182 256 CGN--LNGIWFCYG 267 (330)
Q Consensus 256 ~~~--~~Gi~l~~~ 267 (330)
..+ -+|..|+..
T Consensus 184 D~~il~~gtayitD 197 (266)
T TIGR00282 184 DLRILPKGTAYITD 197 (266)
T ss_pred cceeCCCCCEEEec
Confidence 443 267766654
No 86
>PHA02239 putative protein phosphatase
Probab=97.34 E-value=0.00056 Score=61.63 Aligned_cols=56 Identities=16% Similarity=0.055 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhc--CCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCC
Q 020182 18 LAARLLCWVLIS--QWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQ 76 (330)
Q Consensus 18 ~~~~~~~~i~~~--~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~ 76 (330)
.+.++++.+... +.|.+|++||+++.+.. +.+.+..+++ +....-++++++||||.
T Consensus 15 ~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~--s~~v~~~l~~-~~~~~~~~~~l~GNHE~ 72 (235)
T PHA02239 15 KLLTIMDKINNERKPEETIVFLGDYVDRGKR--SKDVVNYIFD-LMSNDDNVVTLLGNHDD 72 (235)
T ss_pred HHHHHHHHHhhcCCCCCEEEEecCcCCCCCC--hHHHHHHHHH-HhhcCCCeEEEECCcHH
Confidence 346666666443 35999999999998843 3334444443 22334579999999995
No 87
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.28 E-value=0.017 Score=49.47 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCeeEEEeccCCCCCcccCCCCeEEEEeCcccCCCCCCCCCCCceEEEEEec
Q 020182 231 GVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYHGYGKAGWPRRARIILAEA 291 (330)
Q Consensus 231 ~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~Gi~l~~~~~tg~~~yg~~~~~~g~Rv~el~~ 291 (330)
..+..+.+..+.+.++.||.|...+. ..+|+. +..|++.-++.+ ..+..|=++++..
T Consensus 99 ~~l~~la~~~~~Dvli~GHTH~p~~~-~~~~i~-~vNPGS~s~pr~--~~~~sy~il~~~~ 155 (172)
T COG0622 99 SLLEYLAKELGADVLIFGHTHKPVAE-KVGGIL-LVNPGSVSGPRG--GNPASYAILDVDN 155 (172)
T ss_pred HHHHHHHHhcCCCEEEECCCCcccEE-EECCEE-EEcCCCcCCCCC--CCCcEEEEEEcCC
Confidence 45566666677999999999987763 456654 455655544444 2445777888763
No 88
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.27 E-value=0.00061 Score=60.23 Aligned_cols=61 Identities=16% Similarity=-0.005 Sum_probs=37.5
Q ss_pred HHHHHHHHHHH--------hcCCcEEEEcCCccCCCCcc-cHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 17 LLAARLLCWVL--------ISQWIYEYHEGDNIFGSSTT-DVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 17 ~~~~~~~~~i~--------~~~pD~vV~tGDli~~~~~~-~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
.+++++++.+. ..+.|.+|++||+++.++.. +..+.+.++.....+.+.+++++.||||..
T Consensus 11 ~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 11 DAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred HHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 34555555443 34678999999999988432 111222222222223567899999999964
No 89
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=97.26 E-value=0.049 Score=53.69 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHH-----------------------------------
Q 020182 16 KLLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPA----------------------------------- 60 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l----------------------------------- 60 (330)
-.++..++.-+...++|+|++.|||++...+. ...+.++++-|
T Consensus 38 f~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPS--r~~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~Dp 115 (646)
T KOG2310|consen 38 FVTFEEILEIAQENDVDMILLGGDLFHENKPS--RKTLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDP 115 (646)
T ss_pred HHHHHHHHHHHHhcCCcEEEecCcccccCCcc--HHHHHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCC
Confidence 34667788878889999999999999987532 22233332211
Q ss_pred -HHcCCCEEEEccCCCCCCCCCH
Q 020182 61 -MELGLPWAAVLGNHDQESTMDR 82 (330)
Q Consensus 61 -~~~~iP~~~v~GNHD~~~~~~~ 82 (330)
..-+||++.+-||||...+.++
T Consensus 116 NlNIsIPVFsIHGNHDDpSG~~~ 138 (646)
T KOG2310|consen 116 NLNISIPVFSIHGNHDDPSGDGR 138 (646)
T ss_pred CcceeeeeEEeecCCCCCccccc
Confidence 1236899999999999876543
No 90
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.19 E-value=0.00067 Score=62.52 Aligned_cols=54 Identities=28% Similarity=0.145 Sum_probs=37.2
Q ss_pred HHHHHHHHHHH-hcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCC
Q 020182 17 LLAARLLCWVL-ISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQ 76 (330)
Q Consensus 17 ~~~~~~~~~i~-~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~ 76 (330)
..++++++.+. ..++|.++++||+|+.++ ++.+ +++.+.+.+.++.+|.||||.
T Consensus 14 ~~l~~ll~~~~~~~~~D~li~lGDlVdrGp--~s~~----vl~~l~~l~~~~~~VlGNHD~ 68 (275)
T PRK00166 14 DELQRLLEKIDFDPAKDTLWLVGDLVNRGP--DSLE----VLRFVKSLGDSAVTVLGNHDL 68 (275)
T ss_pred HHHHHHHHhcCCCCCCCEEEEeCCccCCCc--CHHH----HHHHHHhcCCCeEEEecChhH
Confidence 34556666653 246799999999999884 3333 333333456688999999996
No 91
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=97.10 E-value=0.035 Score=50.02 Aligned_cols=176 Identities=18% Similarity=0.138 Sum_probs=85.1
Q ss_pred HHHHHHHHH-HhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCCcc
Q 020182 18 LAARLLCWV-LISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDYSV 96 (330)
Q Consensus 18 ~~~~~~~~i-~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~~~ 96 (330)
++++.+..+ .+.++||||..|....++... ..+...+ |.+.++-+. |.|||=.. +.++.+++...+.-+
T Consensus 14 ~v~~~Lp~L~~~~~~DfVIaNgENaa~G~Gi-t~~~~~~----L~~~GvDvi-T~GNH~wd----kkei~~~i~~~~~il 83 (253)
T PF13277_consen 14 AVKEHLPELKEEYGIDFVIANGENAAGGFGI-TPKIAEE----LFKAGVDVI-TMGNHIWD----KKEIFDFIDKEPRIL 83 (253)
T ss_dssp HHHHHHHHHGG--G-SEEEEE-TTTTTTSS---HHHHHH----HHHHT-SEE-E--TTTTS----STTHHHHHHH-SSEE
T ss_pred HHHHHHHHHHhhcCCCEEEECCcccCCCCCC-CHHHHHH----HHhcCCCEE-ecCccccc----CcHHHHHHhcCCCcE
Confidence 344444444 345799999999999888532 1222333 345788874 99999654 456777877766543
Q ss_pred cccCCCCCCCcccccCCcccccccccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCCCCcCcCCCCcHHHHHHHHHHH
Q 020182 97 AQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVS 176 (330)
Q Consensus 97 ~~~~p~~~~~~~~~~~~~~~~~~g~~nY~~~v~~~~~~~~~~~~~~~l~~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~l 176 (330)
+..+.+ +..+|.+...++. + +..+-+++=......+ .+. .-+..+++.+
T Consensus 84 RPaN~p-------------~~~pG~G~~i~~~-~----------g~kv~ViNl~Gr~fm~------~~~-~PF~~~d~~l 132 (253)
T PF13277_consen 84 RPANYP-------------PGTPGRGYRIFEK-N----------GKKVAVINLMGRVFMP------PID-CPFRAADRLL 132 (253)
T ss_dssp --TTS--------------TT-SSBSEEEEEE-T----------TEEEEEEEEE--TTS---------S--HHHHHHHHH
T ss_pred ECCCCC-------------CCCCcCcEEEEEE-C----------CEEEEEEECcccccCC------CCC-ChHHHHHHHH
Confidence 333211 1356666555554 2 1345555543332211 122 4467777777
Q ss_pred HHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEEeccCCCCCcc
Q 020182 177 EALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFC 256 (330)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH~H~n~~~ 256 (330)
++++. ....+||=+|- |..+ | ...|.-.+ .++|.+|+-=|.|.+.-.
T Consensus 133 ~~l~~----------~~~~iiVDFHA---EaTS-----------E--------K~A~g~~l-DGrvsaV~GTHTHVqTaD 179 (253)
T PF13277_consen 133 EELKE----------ETDIIIVDFHA---EATS-----------E--------KQAMGWYL-DGRVSAVVGTHTHVQTAD 179 (253)
T ss_dssp HH---------------SEEEEEEE----S-HH-----------H--------HHHHHHHH-BTTBSEEEEESSSS-BS-
T ss_pred Hhccc----------cCCEEEEEeec---CcHH-----------H--------HHHHHHHh-CCcEEEEEeCCCCccCch
Confidence 77753 35677887873 1111 0 11222223 478999999999997544
Q ss_pred cC--CCCeEEEEe
Q 020182 257 GN--LNGIWFCYG 267 (330)
Q Consensus 257 ~~--~~Gi~l~~~ 267 (330)
.+ -+|..|+..
T Consensus 180 erILp~GTaYiTD 192 (253)
T PF13277_consen 180 ERILPGGTAYITD 192 (253)
T ss_dssp -EE-TTS-EEES-
T ss_pred hhccCCCCEEEec
Confidence 32 356666544
No 92
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.05 E-value=0.0011 Score=60.47 Aligned_cols=56 Identities=27% Similarity=0.165 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHh-cCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 16 KLLAARLLCWVLI-SQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 16 ~~~~~~~~~~i~~-~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
...++++++.+.. .+.|.++++||+|+.++ ++.+ +++.+.+.+..+.+|.||||..
T Consensus 11 ~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp--~s~e----vl~~l~~l~~~v~~VlGNHD~~ 67 (257)
T cd07422 11 YDELQRLLEKINFDPAKDRLWLVGDLVNRGP--DSLE----TLRFVKSLGDSAKTVLGNHDLH 67 (257)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEecCcCCCCc--CHHH----HHHHHHhcCCCeEEEcCCchHH
Confidence 3455677766643 35799999999999984 3333 3333334555788999999973
No 93
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=96.91 E-value=0.0034 Score=56.00 Aligned_cols=60 Identities=17% Similarity=-0.029 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCccCCCCcc--cHHHHHHHHHhHHHHcCCCEEEEccCCCCCC
Q 020182 17 LLAARLLCWVLISQWIYEYHEGDNIFGSSTT--DVAESMIQAFGPAMELGLPWAAVLGNHDQES 78 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~--~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~ 78 (330)
++.+++.+-+...+|+-+|+.||+-+..... .....+..+++.+..+ -|.++.||||...
T Consensus 50 ~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~--evi~i~GNHD~~i 111 (235)
T COG1407 50 RILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER--EVIIIRGNHDNGI 111 (235)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC--cEEEEeccCCCcc
Confidence 3445555567889999999999999888542 2233344444444333 4999999999864
No 94
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.91 E-value=0.0023 Score=64.10 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=40.3
Q ss_pred HHHHHHHHHHH---------hcCCcEEEEcCCccCCCCc----------cc---HHHHHHHHHhHHHHcCCCEEEEccCC
Q 020182 17 LLAARLLCWVL---------ISQWIYEYHEGDNIFGSST----------TD---VAESMIQAFGPAMELGLPWAAVLGNH 74 (330)
Q Consensus 17 ~~~~~~~~~i~---------~~~pD~vV~tGDli~~~~~----------~~---~~~~~~~~l~~l~~~~iP~~~v~GNH 74 (330)
..+.++++++. ..++|.+|++||+++.... .+ .++.+.+++..+. ..+|++++||||
T Consensus 262 ~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~~L~~L~-~~i~V~~ipGNH 340 (504)
T PRK04036 262 DAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAEYLKQIP-EDIKIIISPGNH 340 (504)
T ss_pred HHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHHHHHhhh-cCCeEEEecCCC
Confidence 34556666666 7789999999999986321 01 1233444554442 468999999999
Q ss_pred CCC
Q 020182 75 DQE 77 (330)
Q Consensus 75 D~~ 77 (330)
|..
T Consensus 341 D~~ 343 (504)
T PRK04036 341 DAV 343 (504)
T ss_pred cch
Confidence 975
No 95
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=96.83 E-value=0.0019 Score=57.32 Aligned_cols=58 Identities=17% Similarity=-0.035 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 17 LLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
..+.++++.+...++|.+|++||+++.++. +.+.+..+.+ +.....+++++.||||..
T Consensus 11 ~~l~~~l~~~~~~~~d~li~lGD~vdrg~~--~~~~l~~l~~-~~~~~~~~~~l~GNHe~~ 68 (225)
T cd00144 11 DDLLRLLEKIGFPPNDKLIFLGDYVDRGPD--SVEVIDLLLA-LKILPDNVILLRGNHEDM 68 (225)
T ss_pred HHHHHHHHHhCCCCCCEEEEECCEeCCCCC--cHHHHHHHHH-hcCCCCcEEEEccCchhh
Confidence 345666776666778999999999998843 2223332222 111144899999999974
No 96
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=96.68 E-value=0.0034 Score=56.01 Aligned_cols=56 Identities=21% Similarity=0.095 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhc--------CCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCC
Q 020182 17 LLAARLLCWVLIS--------QWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQ 76 (330)
Q Consensus 17 ~~~~~~~~~i~~~--------~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~ 76 (330)
.+++++++.+... ..|.+|+.||+|+.++ ++.+.+..+.+ +.+.. .+.++.||||.
T Consensus 12 ~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp--~S~~vl~~l~~-l~~~~-~~~~l~GNHE~ 75 (222)
T cd07413 12 EKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGP--EIRELLEIVKS-MVDAG-HALAVMGNHEF 75 (222)
T ss_pred HHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCC--CHHHHHHHHHH-hhcCC-CEEEEEccCcH
Confidence 3455666655322 3589999999999984 34444444333 32222 68889999995
No 97
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=96.59 E-value=0.11 Score=46.66 Aligned_cols=75 Identities=11% Similarity=0.033 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcC-ChHHHHHHHhcCCeeE
Q 020182 166 ESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRV-NSGVLQTLVSLGDIKA 244 (330)
Q Consensus 166 ~~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~-n~~~l~~l~~~~~V~~ 244 (330)
....+-+++.++++++ ....+||.+|--.-... .+.. ...+...+.+. ++++
T Consensus 158 ~~~~~~~~~~i~~lr~----------~~D~vIv~~H~G~e~~~----------------~p~~~~~~la~~l~~~-G~D~ 210 (239)
T cd07381 158 PLDLERIAADIAEAKK----------KADIVIVSLHWGVEYSY----------------YPTPEQRELARALIDA-GADL 210 (239)
T ss_pred ccCHHHHHHHHHHHhh----------cCCEEEEEecCcccCCC----------------CCCHHHHHHHHHHHHC-CCCE
Confidence 3345567776777774 36788899985432110 0011 12344455555 5999
Q ss_pred EEeccCCCCCcccCCCCeEEEEe
Q 020182 245 VFVGHDHTNDFCGNLNGIWFCYG 267 (330)
Q Consensus 245 v~~GH~H~n~~~~~~~Gi~l~~~ 267 (330)
|+.||.|...-+..++|..++|+
T Consensus 211 IiG~H~Hv~q~~E~~~~~~I~YS 233 (239)
T cd07381 211 VIGHHPHVLQGIEIYKGKLIFYS 233 (239)
T ss_pred EEcCCCCcCCCeEEECCEEEEEc
Confidence 99999998765556677766664
No 98
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=96.57 E-value=0.0044 Score=56.98 Aligned_cols=55 Identities=25% Similarity=0.091 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHH-hcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCC
Q 020182 16 KLLAARLLCWVL-ISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQ 76 (330)
Q Consensus 16 ~~~~~~~~~~i~-~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~ 76 (330)
...+.++++.+. ..+.|-++++||+|+.++ ++.+.+. .+.+.+-.+.+|.||||.
T Consensus 13 ~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP--~slevL~----~l~~l~~~~~~VlGNHD~ 68 (279)
T TIGR00668 13 YDELQALLERVEFDPGQDTLWLTGDLVARGP--GSLEVLR----YVKSLGDAVRLVLGNHDL 68 (279)
T ss_pred HHHHHHHHHHhCcCCCCCEEEEeCCccCCCC--CHHHHHH----HHHhcCCCeEEEEChhHH
Confidence 345667777765 335689999999999985 3333332 222344456789999996
No 99
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=96.38 E-value=0.01 Score=54.84 Aligned_cols=57 Identities=14% Similarity=-0.025 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhc------CCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHc--CCCEEEEccCCCC
Q 020182 17 LLAARLLCWVLIS------QWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMEL--GLPWAAVLGNHDQ 76 (330)
Q Consensus 17 ~~~~~~~~~i~~~------~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~--~iP~~~v~GNHD~ 76 (330)
.+++++++.+... ..+.+|+.||+|+.++ ++.+.+..+.+ +... ...+.++.||||.
T Consensus 15 d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGP--dS~eVld~L~~-l~~~~~~~~vv~LrGNHE~ 79 (304)
T cd07421 15 SKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGP--ETRKVIDFLIS-LPEKHPKQRHVFLCGNHDF 79 (304)
T ss_pred HHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCC--CHHHHHHHHHH-hhhcccccceEEEecCChH
Confidence 3445555554322 3468999999999984 33433433333 2222 2257899999995
No 100
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=96.34 E-value=0.0068 Score=53.37 Aligned_cols=53 Identities=25% Similarity=0.098 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHh-cCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 17 LLAARLLCWVLI-SQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 17 ~~~~~~~~~i~~-~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
..+.++++.+.. .++|.++++||+++.+.. .. +.++.+.. .+++++.||||..
T Consensus 14 ~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~--~~----~~~~~l~~--~~~~~v~GNhe~~ 67 (207)
T cd07424 14 SLLQKALDAVGFDPARDRLISVGDLIDRGPE--SL----ACLELLLE--PWFHAVRGNHEQM 67 (207)
T ss_pred HHHHHHHHHcCCCCCCCEEEEeCCcccCCCC--HH----HHHHHHhc--CCEEEeECCChHH
Confidence 345566665543 468999999999998742 22 22332222 3688999999964
No 101
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=96.27 E-value=0.0063 Score=54.08 Aligned_cols=53 Identities=23% Similarity=0.011 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCC
Q 020182 16 KLLAARLLCWVLIS-QWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQ 76 (330)
Q Consensus 16 ~~~~~~~~~~i~~~-~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~ 76 (330)
..++.++++.+... ..|-+++.||+|+.++ ++.+.+.. +.+. .+.++.||||.
T Consensus 29 ~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp--~s~~vl~~----l~~~--~~~~v~GNHE~ 82 (218)
T PRK11439 29 FEQLMRKLRHCRFDPWRDLLISVGDLIDRGP--QSLRCLQL----LEEH--WVRAVRGNHEQ 82 (218)
T ss_pred HHHHHHHHHhcCCCcccCEEEEcCcccCCCc--CHHHHHHH----HHcC--CceEeeCchHH
Confidence 45666777776543 5689999999999984 33333332 2232 35789999994
No 102
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=96.19 E-value=0.19 Score=45.22 Aligned_cols=72 Identities=10% Similarity=-0.006 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcC-ChHHHHHHHhcCCeeEEEe
Q 020182 169 LRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRV-NSGVLQTLVSLGDIKAVFV 247 (330)
Q Consensus 169 l~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~-n~~~l~~l~~~~~V~~v~~ 247 (330)
++=+++.++++++ ....+||.+|--..... .+.. ...+...+.+. +|++|+.
T Consensus 159 ~~~i~~~i~~lr~----------~~D~vIv~~H~G~e~~~----------------~p~~~~~~~A~~l~~~-G~DvIiG 211 (239)
T smart00854 159 REKILADIARARK----------KADVVIVSLHWGVEYQY----------------EPTDEQRELAHALIDA-GADVVIG 211 (239)
T ss_pred HHHHHHHHHHHhc----------cCCEEEEEecCccccCC----------------CCCHHHHHHHHHHHHc-CCCEEEc
Confidence 3334455556663 35788999996552110 0011 12344556665 5999999
Q ss_pred ccCCCCCcccCCCCeEEEEe
Q 020182 248 GHDHTNDFCGNLNGIWFCYG 267 (330)
Q Consensus 248 GH~H~n~~~~~~~Gi~l~~~ 267 (330)
||.|...-...++|..+.|+
T Consensus 212 ~H~H~~~~~e~~~~~~I~Ys 231 (239)
T smart00854 212 HHPHVLQPIEIYKGKLIAYS 231 (239)
T ss_pred CCCCcCCceEEECCEEEEEc
Confidence 99998665556677666653
No 103
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.06 E-value=0.01 Score=48.21 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=25.6
Q ss_pred hcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCC
Q 020182 28 ISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHD 75 (330)
Q Consensus 28 ~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD 75 (330)
..++|+|+++||+... . + ..+..+ .+.|++++.||||
T Consensus 20 ~~~~d~ii~~GD~~~~-----~---~-~~~~~~--~~~~~~~V~GN~D 56 (129)
T cd07403 20 LEGVDLILSAGDLPKE-----Y---L-EYLVTM--LNVPVYYVHGNHD 56 (129)
T ss_pred CCCCCEEEECCCCChH-----H---H-HHHHHH--cCCCEEEEeCCCc
Confidence 5789999999997321 1 1 222222 3678999999999
No 104
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=95.88 E-value=0.017 Score=52.24 Aligned_cols=42 Identities=17% Similarity=-0.038 Sum_probs=28.6
Q ss_pred CcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCC
Q 020182 31 WIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQ 76 (330)
Q Consensus 31 pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~ 76 (330)
-|.+|+.||+|+.++ ++.+.+..+.+ +.. .-.++++.||||.
T Consensus 37 ~d~li~lGDliDRGp--~S~~vl~~~~~-~~~-~~~~~~l~GNHE~ 78 (245)
T PRK13625 37 QRKLAFVGDLTDRGP--HSLRMIEIVWE-LVE-KKAAYYVPGNHCN 78 (245)
T ss_pred CCEEEEECcccCCCc--ChHHHHHHHHH-Hhh-CCCEEEEeCccHH
Confidence 379999999999884 34444443332 222 3379999999974
No 105
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=95.85 E-value=0.019 Score=51.62 Aligned_cols=42 Identities=21% Similarity=0.097 Sum_probs=28.0
Q ss_pred CcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCC
Q 020182 31 WIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQ 76 (330)
Q Consensus 31 pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~ 76 (330)
.|.+|+.||+|+.+. ++.+.+.. +..+... -.++++.||||.
T Consensus 38 ~d~lv~lGDlIDrG~--~s~evl~~-l~~l~~~-~~~~~v~GNHE~ 79 (234)
T cd07423 38 GRRAVFVGDLVDRGP--DSPEVLRL-VMSMVAA-GAALCVPGNHDN 79 (234)
T ss_pred CCEEEEECCccCCCC--CHHHHHHH-HHHHhhC-CcEEEEECCcHH
Confidence 589999999999884 33333332 3223222 257899999995
No 106
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=95.82 E-value=0.014 Score=51.88 Aligned_cols=52 Identities=19% Similarity=0.086 Sum_probs=33.7
Q ss_pred HHHHHHHHHHH-hcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCC
Q 020182 17 LLAARLLCWVL-ISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQ 76 (330)
Q Consensus 17 ~~~~~~~~~i~-~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~ 76 (330)
.+++++++.+. ..+.|.+++.||+++.++. +.+.+ +-+.+. .++++.||||.
T Consensus 28 ~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~--~~~~l----~~l~~~--~~~~v~GNHE~ 80 (218)
T PRK09968 28 QLLQSRLHQLSFCPETDLLISVGDNIDRGPE--SLNVL----RLLNQP--WFISVKGNHEA 80 (218)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCCCcCCCcC--HHHHH----HHHhhC--CcEEEECchHH
Confidence 34556666554 3467999999999998843 23233 222222 46789999995
No 107
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=95.23 E-value=0.045 Score=48.62 Aligned_cols=75 Identities=15% Similarity=0.045 Sum_probs=49.0
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHhcCCcEEEEcCCccCCCCc-------------------c--cHH-HHHHHH---
Q 020182 2 LSGCFVPNLPWQLRKLLAARLLCWVLISQWIYEYHEGDNIFGSST-------------------T--DVA-ESMIQA--- 56 (330)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~-------------------~--~~~-~~~~~~--- 56 (330)
.+-|+-++.++......++.. ..+.+|||+|++||.|+.... . +.+ +.+...
T Consensus 4 ~~SC~~~~~~~~~~~~~~~~~---~~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~ 80 (228)
T cd07389 4 FGSCNKYESGYFNAYRALAYD---HSEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSD 80 (228)
T ss_pred EEECCCCCCCCcHHHHHHhhh---ccccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCC
Confidence 356988888777655544332 457789999999999999841 1 111 111111
Q ss_pred --HhHHHHcCCCEEEEccCCCCCCCC
Q 020182 57 --FGPAMELGLPWAAVLGNHDQESTM 80 (330)
Q Consensus 57 --l~~l~~~~iP~~~v~GNHD~~~~~ 80 (330)
++.+ ...+|++.++-+||+..+.
T Consensus 81 p~~~~~-~~~~p~~~iwDDHDi~~n~ 105 (228)
T cd07389 81 PDLQRL-LAQVPTIGIWDDHDIGDNW 105 (228)
T ss_pred HHHHHH-hhcCCEEEecccccccccc
Confidence 2222 2568999999999998654
No 108
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=94.33 E-value=2.5 Score=38.11 Aligned_cols=77 Identities=12% Similarity=0.095 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeE
Q 020182 165 KESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKA 244 (330)
Q Consensus 165 ~~~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~ 244 (330)
...+++.+.+..+++++ ....+||++|--.. +. ... ......+...+.+.+ +++
T Consensus 166 ~~~~~~~i~~~i~~~r~----------~~D~vIv~~HwG~e-~~-----~~p---------~~~q~~~a~~lidaG-aDi 219 (250)
T PF09587_consen 166 NRPGIERIKEDIREARK----------KADVVIVSLHWGIE-YE-----NYP---------TPEQRELARALIDAG-ADI 219 (250)
T ss_pred ccchHHHHHHHHHHHhc----------CCCEEEEEeccCCC-CC-----CCC---------CHHHHHHHHHHHHcC-CCE
Confidence 34556888888778873 46789999996321 10 000 011234666778875 999
Q ss_pred EEeccCCCCCcccCCCCeEEEEe
Q 020182 245 VFVGHDHTNDFCGNLNGIWFCYG 267 (330)
Q Consensus 245 v~~GH~H~n~~~~~~~Gi~l~~~ 267 (330)
|+.+|-|.-.-...++|-.++|+
T Consensus 220 IiG~HpHv~q~~E~y~~~~I~YS 242 (250)
T PF09587_consen 220 IIGHHPHVIQPVEIYKGKPIFYS 242 (250)
T ss_pred EEeCCCCcccceEEECCEEEEEe
Confidence 99999998665556666666664
No 109
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=94.30 E-value=0.11 Score=43.42 Aligned_cols=57 Identities=14% Similarity=0.012 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHH-hcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCC
Q 020182 16 KLLAARLLCWVL-ISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHD 75 (330)
Q Consensus 16 ~~~~~~~~~~i~-~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD 75 (330)
....+++-+... ..+.|++++.||+....... ..|.+.+..-.+..+|.|++-|||.
T Consensus 11 ~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~---~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 11 KALFEKVNTINKKKGPFDALLCVGDFFGDDEDD---EELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred HHHHHHHHHHhcccCCeeEEEEecCccCCccch---hhHHHHhcCCccCCCCEEEECCCCC
Confidence 344444443222 33459999999977655321 3466666665678899999999996
No 110
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=94.25 E-value=0.022 Score=50.05 Aligned_cols=76 Identities=17% Similarity=-0.073 Sum_probs=40.1
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHH-hcCCcEEEEcCCccCCCCccc----------H-HHHHHHHHhHHH--HcCCCE
Q 020182 2 LSGCFVPNLPWQLRKLLAARLLCWVL-ISQWIYEYHEGDNIFGSSTTD----------V-AESMIQAFGPAM--ELGLPW 67 (330)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~pD~vV~tGDli~~~~~~~----------~-~~~~~~~l~~l~--~~~iP~ 67 (330)
+||++....+.. ...+..++..+. ..+|+.+|++|+.++...... . ...+.++.+.+. ..++++
T Consensus 4 ~Sg~~~~~~~~~--~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 81 (209)
T PF04042_consen 4 ASGPFLDSDNLS--LEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQV 81 (209)
T ss_dssp EES--CTTT-HH--HHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSEE
T ss_pred EecCccCCCHhH--HHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccEE
Confidence 466666633222 334445555555 778999999999999753211 1 111222222221 256899
Q ss_pred EEEccCCCCCCC
Q 020182 68 AAVLGNHDQEST 79 (330)
Q Consensus 68 ~~v~GNHD~~~~ 79 (330)
.++||+||....
T Consensus 82 vlvPg~~D~~~~ 93 (209)
T PF04042_consen 82 VLVPGPNDPTSS 93 (209)
T ss_dssp EEE--TTCTT-S
T ss_pred EEeCCCcccccc
Confidence 999999998653
No 111
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=93.83 E-value=4.8 Score=36.25 Aligned_cols=58 Identities=24% Similarity=0.284 Sum_probs=39.1
Q ss_pred HhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCC
Q 020182 27 LISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDY 94 (330)
Q Consensus 27 ~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~ 94 (330)
.+.++|||+..|-.+.++... .++.+..++ +.++-+ ++.|||=. .+.++.+++...++
T Consensus 27 ~kyk~dfvI~N~ENaa~G~Gi-t~k~y~~l~----~~G~dv-iT~GNH~w----d~~ei~~~i~~~~~ 84 (266)
T COG1692 27 SKYKIDFVIVNGENAAGGFGI-TEKIYKELL----EAGADV-ITLGNHTW----DQKEILDFIDNADR 84 (266)
T ss_pred HhhcCcEEEEcCccccCCcCC-CHHHHHHHH----HhCCCE-Eecccccc----cchHHHHHhhcccc
Confidence 456899999999998888532 223334433 468877 59999953 45567777765554
No 112
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=93.74 E-value=0.14 Score=46.77 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=32.8
Q ss_pred cEEEEcCCccCCCCcc-------------------cHHHHHHHHHhHHHHcCCCEEEEccCCCCCCC
Q 020182 32 IYEYHEGDNIFGSSTT-------------------DVAESMIQAFGPAMELGLPWAAVLGNHDQEST 79 (330)
Q Consensus 32 D~vV~tGDli~~~~~~-------------------~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~ 79 (330)
..+|+.||.+.+-... +.++.+..++..+. ..||+.++|||||....
T Consensus 44 ~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~l~-~~i~V~imPG~~Dp~~~ 109 (257)
T cd07387 44 VRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQLA-SSVPVDLMPGEFDPANH 109 (257)
T ss_pred EEEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHhhh-cCCeEEECCCCCCcccc
Confidence 4799999999976321 12344555555543 47999999999998653
No 113
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=93.41 E-value=0.2 Score=46.13 Aligned_cols=59 Identities=15% Similarity=-0.012 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 17 LLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
.++.++++.+.....+-+|+.||+++.+.. +.+.+..++.-.....--++.+.||||..
T Consensus 41 ~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~--s~e~l~~l~~lk~~~p~~v~llrGNHE~~ 99 (271)
T smart00156 41 DDLLRLFDLNGPPPDTNYVFLGDYVDRGPF--SIEVILLLFALKILYPNRVVLLRGNHESR 99 (271)
T ss_pred HHHHHHHHHcCCCCCceEEEeCCccCCCCC--hHHHHHHHHHHHhcCCCCEEEEeccccHH
Confidence 344455544444455789999999998843 33334333321112233589999999985
No 114
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=93.05 E-value=0.48 Score=43.39 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccc-ccc---CCccccccccC--cCCcCChHHHHHHHhcCC
Q 020182 168 QLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQ-LYY---QNIVGQFQEAV--ACSRVNSGVLQTLVSLGD 241 (330)
Q Consensus 168 Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~-~~~---~~~~G~~~e~~--~~~~~n~~~l~~l~~~~~ 241 (330)
-+-||+..+....+ ..+|+++|.|+---.+.. .|. +.+- .-+++. -.+....+.+...++-++
T Consensus 254 slpwlk~dl~~~aa----------dgrpv~LfqhyGwdtfsteawdpAsrT~D-d~Gsgaphww~a~er~all~~lqGYN 322 (392)
T COG5555 254 SLPWLKVDLIYSAA----------DGRPVYLFQHYGWDTFSTEAWDPASRTLD-DTGSGAPHWWPAPERGALLFFLQGYN 322 (392)
T ss_pred cCcceeccceeecc----------CCCceeehhhhCccceeccccCchhcccc-cCCCCCCCCCCCCCcchHHHhhcCce
Confidence 36699885544332 578999999984433221 221 1111 011111 112233445555566689
Q ss_pred eeEEEeccCCCCC
Q 020182 242 IKAVFVGHDHTND 254 (330)
Q Consensus 242 V~~v~~GH~H~n~ 254 (330)
|..+|.||-|.-.
T Consensus 323 vvg~fhGhkhd~~ 335 (392)
T COG5555 323 VVGTFHGHKHDFN 335 (392)
T ss_pred eEEeccccccccc
Confidence 9999999999643
No 115
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=93.00 E-value=0.63 Score=46.71 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHH-HHhcCCeeE-
Q 020182 167 SQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQT-LVSLGDIKA- 244 (330)
Q Consensus 167 ~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~-l~~~~~V~~- 244 (330)
.|.+|..+.++. . ....+|++.|.|+..... | .-.+.. ....+++..
T Consensus 212 ~~~~~~~~m~~~---~---------~idlii~lgH~~~~~~~e-~------------------~~~~~~ir~~~p~t~Iq 260 (602)
T KOG4419|consen 212 TQSEWEQDMVNT---T---------DIDLIIALGHSPVRDDDE-W------------------KSLHAEIRKVHPNTPIQ 260 (602)
T ss_pred hccchHHHHhhc---c---------CccEEEEecccccccchh-h------------------hhHHHHHhhhCCCCceE
Confidence 355777774333 1 466888999998864211 1 113333 334578888
Q ss_pred EEeccCCCCCccc
Q 020182 245 VFVGHDHTNDFCG 257 (330)
Q Consensus 245 v~~GH~H~n~~~~ 257 (330)
||-||.|.+++..
T Consensus 261 viGGHshird~a~ 273 (602)
T KOG4419|consen 261 VIGGHSHIRDFAV 273 (602)
T ss_pred EECchhhhhhhhh
Confidence 9999999998864
No 116
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=92.78 E-value=0.4 Score=40.05 Aligned_cols=54 Identities=24% Similarity=0.172 Sum_probs=35.5
Q ss_pred HHHHhcCC-cEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHH
Q 020182 24 CWVLISQW-IYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDRE 83 (330)
Q Consensus 24 ~~i~~~~p-D~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~ 83 (330)
++.+.-.| |.|-+.||++.+.+.. .....+++ .++--...|+||||-...+-++
T Consensus 38 N~nntv~p~D~lwhLGDl~~~~n~~---~~a~~Ile---rLnGrkhlv~GNhDk~~~~~~~ 92 (186)
T COG4186 38 NWNNTVGPDDVLWHLGDLSSGANRE---RAAGLILE---RLNGRKHLVPGNHDKCHPMYRH 92 (186)
T ss_pred hHHhcCCccceEEEecccccccchh---hHHHHHHH---HcCCcEEEeeCCCCCCcccccc
Confidence 44455567 6999999999987532 23334444 3444558999999986554444
No 117
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=92.61 E-value=0.32 Score=45.55 Aligned_cols=58 Identities=12% Similarity=-0.051 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 18 LAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
++.++++.+.....+-+|+.||.++.+. .+.+.+..++.-.....--++.+.||||..
T Consensus 57 dL~~l~~~~g~~~~~~ylFLGDyVDRG~--~s~Evi~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 57 DLLKLFEVGGSPANTRYLFLGDYVDRGY--FSIECVLYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred HHHHHHHhcCCCCCceEEEECCccCCCC--ChHHHHHHHHHHHhhcCCCEEEEeCCCcHH
Confidence 3444554433333478999999999884 334444443321112223588999999974
No 118
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=91.52 E-value=0.34 Score=45.16 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 18 LAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
.+.++++.+.....+-+|+.||+++.+. .+.+.+..++.-.....-.++.+.||||..
T Consensus 66 ~L~~l~~~~~~~~~~~~lfLGDyVDRG~--~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 123 (294)
T PTZ00244 66 DLLRIFEKCGFPPYSNYLFLGDYVDRGK--HSVETITLQFCYKIVYPENFFLLRGNHECA 123 (294)
T ss_pred HHHHHHHHcCCCCcccEEEeeeEecCCC--CHHHHHHHHHHHhhccCCeEEEEecccchH
Confidence 4445555444334456889999999984 233333333221111233589999999974
No 119
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=91.07 E-value=0.46 Score=44.03 Aligned_cols=57 Identities=12% Similarity=-0.019 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 19 AARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 19 ~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
+.++++.......+-+|+.||.++.+. .+.+.+..++.-.....-.++.+.||||..
T Consensus 57 L~~ll~~~~~~~~~~~lfLGDyVDRG~--~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 113 (285)
T cd07415 57 LLELFRVGGDPPDTNYLFLGDYVDRGY--YSVETFLLLLALKVRYPDRITLLRGNHESR 113 (285)
T ss_pred HHHHHHHcCCCCCCeEEEEeEECCCCc--CHHHHHHHHHHHhhcCCCcEEEEecccchH
Confidence 334444332233468899999999884 233334333221112233589999999974
No 120
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=91.07 E-value=0.48 Score=45.55 Aligned_cols=59 Identities=15% Similarity=-0.011 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCCc-EEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 17 LLAARLLCWVLISQWI-YEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD-~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
.++.++++.+-....+ .+|+.||+|+.+. .+.+.+..++.-.....--++.+.||||..
T Consensus 79 ~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp--~SlEvl~lL~~lki~~p~~v~lLRGNHE~~ 138 (377)
T cd07418 79 HDVLFLLEDAGFPDQNRFYVFNGDYVDRGA--WGLETFLLLLSWKVLLPDRVYLLRGNHESK 138 (377)
T ss_pred HHHHHHHHHhCCCCCCceEEEeccccCCCC--ChHHHHHHHHHHhhccCCeEEEEeeecccc
Confidence 3444555443222233 6999999999884 334444333321112223488999999975
No 121
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=90.83 E-value=0.46 Score=44.22 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 18 LAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
.+.++++.......+-+|+.||+++.+.. +.+.+..++.-.....--++.+.||||..
T Consensus 64 ~L~~l~~~~~~~~~~~~lfLGDyVDRG~~--s~e~i~ll~~lk~~~p~~i~llrGNHE~~ 121 (293)
T cd07414 64 DLLRLFEYGGFPPESNYLFLGDYVDRGKQ--SLETICLLLAYKIKYPENFFLLRGNHECA 121 (293)
T ss_pred HHHHHHHhcCCCCcceEEEEeeEecCCCC--cHHHHHHHHHhhhhCCCcEEEEecccchh
Confidence 33444544433344678999999998843 23333333321112222488999999985
No 122
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=89.79 E-value=0.57 Score=44.14 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 18 LAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
.+.+++........+-.|+.||+++.+.. +.+.+..++.-.....-.++.+.||||..
T Consensus 73 dL~~l~~~~g~~~~~~ylfLGDyVDRG~~--s~evl~ll~~lki~~p~~v~llRGNHE~~ 130 (320)
T PTZ00480 73 DLLRLFEYGGYPPESNYLFLGDYVDRGKQ--SLETICLLLAYKIKYPENFFLLRGNHECA 130 (320)
T ss_pred HHHHHHHhcCCCCcceEEEeceecCCCCC--cHHHHHHHHHhcccCCCceEEEecccchh
Confidence 33344443323334678899999998842 23333333321111222589999999985
No 123
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=89.66 E-value=0.7 Score=43.57 Aligned_cols=45 Identities=18% Similarity=0.059 Sum_probs=28.7
Q ss_pred cEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCC
Q 020182 32 IYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQES 78 (330)
Q Consensus 32 D~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~ 78 (330)
+..|+.||.|+.+. .+.+.+.-+++-.....--++.+.|||+...
T Consensus 80 ~~~lFLGDyVDRG~--~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~ 124 (321)
T cd07420 80 NPYVFNGDFVDRGK--RSIEILIILFAFFLVYPNEVHLNRGNHEDHI 124 (321)
T ss_pred ceEEEeccccCCCC--CcHHHHHHHHHHhhcCCCcEEEecCchhhhh
Confidence 57999999999984 2333343333211122234888999999863
No 124
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=89.41 E-value=0.8 Score=42.86 Aligned_cols=58 Identities=14% Similarity=-0.072 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 18 LAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
.+.++++.......+-+|+.||.++.+. .+.+.+..++.-.....--++.+.||||..
T Consensus 57 ~L~~l~~~~~~~~~~~~lfLGDyVDRG~--~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 114 (303)
T PTZ00239 57 DLQALFKEGGDIPNANYIFIGDFVDRGY--NSVETMEYLLCLKVKYPGNITLLRGNHESR 114 (303)
T ss_pred HHHHHHHhcCCCCCceEEEeeeEcCCCC--CHHHHHHHHHHhhhcCCCcEEEEecccchH
Confidence 3344444332233467899999999984 233334333321111222488999999974
No 125
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=87.56 E-value=0.56 Score=46.00 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhc-----CCcEEEEcCCccCCCCc---c----------cHHHHHHHHHhHHHHcCCCEEEEccCCCCCC
Q 020182 18 LAARLLCWVLIS-----QWIYEYHEGDNIFGSST---T----------DVAESMIQAFGPAMELGLPWAAVLGNHDQES 78 (330)
Q Consensus 18 ~~~~~~~~i~~~-----~pD~vV~tGDli~~~~~---~----------~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~ 78 (330)
...+.++++.-. +..+++++||++++-.. + +.++.+.+++... --.|.+++.|||||...
T Consensus 245 ~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~v-p~~I~v~i~PGnhDa~r 322 (481)
T COG1311 245 EFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQV-PEHIKVFIMPGNHDAVR 322 (481)
T ss_pred HHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhhC-CCCceEEEecCCCCccc
Confidence 334455554432 34689999999997632 1 1345555555432 24577999999999764
No 126
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=87.30 E-value=1.4 Score=41.29 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=33.6
Q ss_pred ChHHHHHHHhcCCeeEEEeccC-CCCCcccCCCCeEEEEeCcccCCCCCCCCCCCceEEEEEec
Q 020182 229 NSGVLQTLVSLGDIKAVFVGHD-HTNDFCGNLNGIWFCYGGGIGYHGYGKAGWPRRARIILAEA 291 (330)
Q Consensus 229 n~~~l~~l~~~~~V~~v~~GH~-H~n~~~~~~~Gi~l~~~~~tg~~~yg~~~~~~g~Rv~el~~ 291 (330)
+....+.+++..+++.++=||. ....+....+|--+..-.++.|-+. ....+-++.++.
T Consensus 241 g~~~~~~Fl~~n~l~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~----~~n~~ai~~i~~ 300 (311)
T cd07419 241 GPDRVHRFLEENDLQMIIRAHECVMDGFERFAQGKLITLFSATNYCGT----AGNAGAILVLGR 300 (311)
T ss_pred CHHHHHHHHHHCCCeEEEEechhhhCCeEEeCCCeEEEEecCCcccCC----CCceEEEEEECC
Confidence 4567888888889999999997 3233322233422222233444211 124566788774
No 127
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=87.01 E-value=1.1 Score=42.15 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=27.9
Q ss_pred cEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 32 IYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 32 D~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
|-+|+.||+++.+. .+.+.+..++.-.....--++.+.|||+..
T Consensus 89 ~~ylFLGDyVDRG~--~S~Evl~ll~~lki~~p~~v~lLRGNHE~~ 132 (316)
T cd07417 89 NPYLFNGDFVDRGS--FSVEVILTLFAFKLLYPNHFHLNRGNHETD 132 (316)
T ss_pred CeEEEEeeEecCCC--ChHHHHHHHHHhhhccCCceEEEeeccchH
Confidence 57999999999984 334444443321112223478899999974
No 128
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=83.53 E-value=1.3 Score=37.75 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=12.4
Q ss_pred cCCeeEEEeccCCCC
Q 020182 239 LGDIKAVFVGHDHTN 253 (330)
Q Consensus 239 ~~~V~~v~~GH~H~n 253 (330)
..++.++||||+|..
T Consensus 132 ~~~~~~~lsGH~H~~ 146 (171)
T cd07384 132 TIKPVLILSGHDHDQ 146 (171)
T ss_pred ccCceEEEeCcccCC
Confidence 456899999999964
No 129
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.86 E-value=7.7 Score=32.26 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=51.3
Q ss_pred hHHHHHHHhcCCeeEEEeccCCCCCcccCCCCeEEEEeCcccCCCCCC---CCCCCceEEEEEecCCCCCCcccccceEE
Q 020182 230 SGVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYHGYGK---AGWPRRARIILAEAGKGENGWMEVEMIKT 306 (330)
Q Consensus 230 ~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~Gi~l~~~~~tg~~~yg~---~~~~~g~Rv~el~~~~~~~~~~~~~~~~t 306 (330)
...+..|.+.-+|+..+.||.|.-... ..+|- +...|+++-|+|.. +...|.+-++.+.. ..+.|
T Consensus 96 ~~sL~~LaRqldvDILl~G~Th~f~Ay-e~eg~-ffvnPGSaTGAfn~~~t~~~~PSFvLmDiqg----------~~~v~ 163 (183)
T KOG3325|consen 96 PESLALLARQLDVDILLTGHTHKFEAY-EHEGK-FFVNPGSATGAFNVSDTDIIVPSFVLMDIQG----------STVVT 163 (183)
T ss_pred HHHHHHHHHhcCCcEEEeCCceeEEEE-EeCCc-EEeCCCcccCCCcccccCCCCCceEEEEecC----------CEEEE
Confidence 456777777778999999999964432 33443 34456665556653 23567777777763 36888
Q ss_pred E-EEccCCCCCceec
Q 020182 307 W-KRLDDQRLSKIDE 320 (330)
Q Consensus 307 w-~r~~~~~~~~~~~ 320 (330)
| .|+-|+. +++|.
T Consensus 164 YvY~lidge-VkVdk 177 (183)
T KOG3325|consen 164 YVYRLIDGE-VKVDK 177 (183)
T ss_pred EEeeeeCCc-EEEEE
Confidence 8 7887876 45554
No 130
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=81.36 E-value=1.8 Score=37.81 Aligned_cols=38 Identities=21% Similarity=0.396 Sum_probs=27.2
Q ss_pred EEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCCeeEEEeccCCCCCc
Q 020182 197 LAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDF 255 (330)
Q Consensus 197 ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~V~~v~~GH~H~n~~ 255 (330)
|+++|.|+.... ..++..+...-++..||+||+|....
T Consensus 112 i~lsH~P~~~~~---------------------~~~~~~~~~~~~p~~Ifs~H~H~s~~ 149 (195)
T cd08166 112 IMLSHVPLLAEG---------------------GQALKHVVTDLDPDLIFSAHRHKSSI 149 (195)
T ss_pred eeeecccccccc---------------------cHHHHHHHHhcCceEEEEcCccceee
Confidence 999999997531 12444555455799999999997543
No 131
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=79.58 E-value=2.5 Score=37.69 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=20.7
Q ss_pred ChHHHHHHHhcCCeeEEEeccCCCCCcc
Q 020182 229 NSGVLQTLVSLGDIKAVFVGHDHTNDFC 256 (330)
Q Consensus 229 n~~~l~~l~~~~~V~~v~~GH~H~n~~~ 256 (330)
+...+..+++..++.+++|||.|.+...
T Consensus 173 ~~~~~~~~~~~~~~~~~i~GHtH~~~~~ 200 (231)
T TIGR01854 173 NPAEVAAVMRRYGVDRLIHGHTHRPAIH 200 (231)
T ss_pred CHHHHHHHHHHcCCCEEEECCccCccee
Confidence 3455666555568999999999987653
No 132
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=77.20 E-value=4.3 Score=38.53 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=35.8
Q ss_pred cCCcEEEEcCCccCCCCccc--------HHHHHHHHHhHH---HHcCCCEEEEccCCCCCCCCCHHHHHHHHHhcCC
Q 020182 29 SQWIYEYHEGDNIFGSSTTD--------VAESMIQAFGPA---MELGLPWAAVLGNHDQESTMDREELMYFISLMDY 94 (330)
Q Consensus 29 ~~pD~vV~tGDli~~~~~~~--------~~~~~~~~l~~l---~~~~iP~~~v~GNHD~~~~~~~~~l~~~~~~~~~ 94 (330)
.+.|++++.||.=.-.+..| -++++..+.... ..+.||-.++-|||+... ++.++||
T Consensus 29 tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIFIGGNHEAsn---------yL~eLpy 96 (456)
T KOG2863|consen 29 TKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIFIGGNHEASN---------YLQELPY 96 (456)
T ss_pred CCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEEecCchHHHH---------HHHhccc
Confidence 37799999999533322211 234444444433 356799999999998643 4555675
No 133
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=76.18 E-value=3.2 Score=37.05 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=40.3
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHh---cCCc-EEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccC
Q 020182 5 CFVPNLPWQLRKLLAARLLCWVLI---SQWI-YEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGN 73 (330)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~i~~---~~pD-~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GN 73 (330)
|.--..-++|...+++.++..+.. ..=| .=+++||.. -|-++.+-++.|.+++|||.++||=
T Consensus 47 ~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk~VvRLhSGDps-------iYgA~~EQm~~L~~~gI~yevvPGV 112 (254)
T COG2875 47 CRPDAEIVNSASLTLEEIIDLMVDAVREGKDVVRLHSGDPS-------IYGALAEQMRELEALGIPYEVVPGV 112 (254)
T ss_pred cCCCCEEEecCcCCHHHHHHHHHHHHHcCCeEEEeecCChh-------HHHHHHHHHHHHHHcCCCeEEeCCc
Confidence 443345566666666666654432 2334 448999942 2445666677788999999999995
No 134
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=70.08 E-value=3.1 Score=36.28 Aligned_cols=13 Identities=31% Similarity=0.624 Sum_probs=11.3
Q ss_pred CeeEEEeccCCCC
Q 020182 241 DIKAVFVGHDHTN 253 (330)
Q Consensus 241 ~V~~v~~GH~H~n 253 (330)
++.++||||+|..
T Consensus 144 ~~dl~lSGHtHgG 156 (193)
T cd08164 144 KPGLILTGHDHEG 156 (193)
T ss_pred CCCEEEeCccCCC
Confidence 5899999999963
No 135
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=68.56 E-value=12 Score=36.85 Aligned_cols=51 Identities=16% Similarity=0.093 Sum_probs=35.6
Q ss_pred HHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 23 LCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 23 ~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
++.|...+||.|+++|= +++++ .+.-....+++..+ ..++|+ +..||-|..
T Consensus 113 l~~I~~~~PDIILLaGG-tDGG~-~e~~l~NA~~La~~-~~~~pI-IyAGN~~a~ 163 (463)
T TIGR01319 113 IEAIEESNLDIILFAGG-TDGGE-EECGIHNAKMLAEH-GLDCAI-IVAGNKDIQ 163 (463)
T ss_pred HHHHhhcCCCEEEEeCC-cCCCc-hHHHHHHHHHHHhc-CCCCcE-EEeCCHHHH
Confidence 45677789999999998 77774 34334455666543 467885 578998864
No 136
>PRK09453 phosphodiesterase; Provisional
Probab=66.50 E-value=11 Score=32.09 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=23.4
Q ss_pred CCeeEEEeccCCCCCcccCCCCeEEEEeCcccC
Q 020182 240 GDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGY 272 (330)
Q Consensus 240 ~~V~~v~~GH~H~n~~~~~~~Gi~l~~~~~tg~ 272 (330)
.+++++++||.|... ....+|..++-.|+.|.
T Consensus 117 ~~~d~vi~GHtH~p~-~~~~~~~~~iNpGs~~~ 148 (182)
T PRK09453 117 HDGDVLVYGHTHIPV-AEKQGGIILFNPGSVSL 148 (182)
T ss_pred cCCCEEEECCCCCCc-ceEECCEEEEECCCccc
Confidence 357899999999754 34567887777666664
No 137
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=62.92 E-value=18 Score=32.21 Aligned_cols=62 Identities=18% Similarity=0.084 Sum_probs=39.2
Q ss_pred cCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCC---------CCCCCCHHHHHHHHHh
Q 020182 29 SQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHD---------QESTMDREELMYFISL 91 (330)
Q Consensus 29 ~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD---------~~~~~~~~~l~~~~~~ 91 (330)
...|++|++|| .+.-.+.-.++.-.++++...+.+.+..++.|--- .....+..++.+.+++
T Consensus 82 ~~~Dliil~Gd-~Q~~~~~gqyel~~~~Ld~a~e~g~~~IyTLGGy~vGkl~eep~VlGA~ts~eLi~~lke 152 (258)
T COG2047 82 GERDLIILVGD-TQATSSEGQYELTGKILDIAKEFGARMIYTLGGYGVGKLVEEPRVLGAVTSKELIEELKE 152 (258)
T ss_pred CCCcEEEEecc-ccccCcchhHHHHHHHHHHHHHcCCcEEEEecCcccCcccCCceeEEecCCHHHHHHHHH
Confidence 45699999999 45543333444446677766788999999988643 3333444455555544
No 138
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=57.33 E-value=29 Score=33.05 Aligned_cols=61 Identities=20% Similarity=0.081 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccC---CCCCCCCCHHHHH
Q 020182 16 KLLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGN---HDQESTMDREELM 86 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GN---HD~~~~~~~~~l~ 86 (330)
..++..+-+.+.+.+||+||+.||- .+.+.-++... .++||++.+-|= +|....+..+...
T Consensus 53 ~~~~~~~~~~~~~~~Pd~Vlv~GD~---------~~~la~alaA~-~~~ipv~HieaGlRs~d~~~g~~de~~R 116 (346)
T PF02350_consen 53 GLAIIELADVLEREKPDAVLVLGDR---------NEALAAALAAF-YLNIPVAHIEAGLRSGDRTEGMPDEINR 116 (346)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEETTS---------HHHHHHHHHHH-HTT-EEEEES-----S-TTSSTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCC---------chHHHHHHHHH-HhCCCEEEecCCCCccccCCCCchhhhh
Confidence 4455555566778899999999992 22454444432 478999988664 4444334444333
No 139
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=56.76 E-value=33 Score=28.42 Aligned_cols=53 Identities=15% Similarity=-0.029 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCcEEEEcC---CccCCCCcccHHHHHHHHHhHHHHc--CCCEEEE
Q 020182 18 LAARLLCWVLISQWIYEYHEG---DNIFGSSTTDVAESMIQAFGPAMEL--GLPWAAV 70 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD~vV~tG---Dli~~~~~~~~~~~~~~~l~~l~~~--~iP~~~v 70 (330)
.++++.+.+...+||.|++.. |+..+....+..+.+.++++.+.+. +.+++++
T Consensus 38 ~~~~~~~~~~~~~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 38 CLHYFDRLVLPYQPRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred HHHHHHhhhccCCCCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 344444555556899777744 7665543334556677777766543 4666554
No 140
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=54.70 E-value=48 Score=27.67 Aligned_cols=11 Identities=18% Similarity=0.045 Sum_probs=5.3
Q ss_pred EEEEccCCCCC
Q 020182 67 WAAVLGNHDQE 77 (330)
Q Consensus 67 ~~~v~GNHD~~ 77 (330)
+++..|-+|..
T Consensus 63 v~i~~G~ND~~ 73 (183)
T cd04501 63 VIIMGGTNDII 73 (183)
T ss_pred EEEEeccCccc
Confidence 34444555554
No 141
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=52.94 E-value=17 Score=37.22 Aligned_cols=51 Identities=18% Similarity=-0.010 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 20 ARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 20 ~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
.++...|.+.-.|-+-+.||+.+.|+.++ .+++.|... --+=+-+||||.-
T Consensus 174 ~al~~lIqrL~VDhLHIvGDIyDRGp~pd------~ImD~Lm~~-hsvDIQWGNHDIl 224 (640)
T PF06874_consen 174 IALSELIQRLAVDHLHIVGDIYDRGPRPD------KIMDRLMNY-HSVDIQWGNHDIL 224 (640)
T ss_pred HHHHHHHHHHhhhheeecccccCCCCChh------HHHHHHhcC-CCccccccchHHH
Confidence 34444556666798999999999986543 333333322 1244567999975
No 142
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.94 E-value=53 Score=27.02 Aligned_cols=43 Identities=14% Similarity=0.045 Sum_probs=25.9
Q ss_pred hcCCcEEE-EcC--CccCCCCcccHHHHHHHHHhHHHH--cCCCEEEE
Q 020182 28 ISQWIYEY-HEG--DNIFGSSTTDVAESMIQAFGPAME--LGLPWAAV 70 (330)
Q Consensus 28 ~~~pD~vV-~tG--Dli~~~~~~~~~~~~~~~l~~l~~--~~iP~~~v 70 (330)
..+||+|+ ..| |+....+..+..+.+.++++.+.+ .+++++++
T Consensus 46 ~~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 46 ALQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred ccCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 66899554 455 654433223445667777777666 56776654
No 143
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=51.06 E-value=21 Score=35.17 Aligned_cols=53 Identities=15% Similarity=-0.034 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCC
Q 020182 19 AARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQES 78 (330)
Q Consensus 19 ~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~ 78 (330)
..++...|.+.-.|.+=+.||+-+.++.++ ++++.+.... -+-+-+||||.-.
T Consensus 179 I~ala~~iqrLvVDhLHiVGDIyDRGP~pd------~Imd~L~~yh-svDiQWGNHDilW 231 (648)
T COG3855 179 IIALAYLIQRLVVDHLHIVGDIYDRGPYPD------KIMDTLINYH-SVDIQWGNHDILW 231 (648)
T ss_pred HHHHHHHHHHHhhhheeeecccccCCCCch------HHHHHHhhcc-cccccccCcceEE
Confidence 334445566667898899999988886543 2333332211 1334569999763
No 144
>PF13941 MutL: MutL protein
Probab=50.22 E-value=36 Score=33.79 Aligned_cols=53 Identities=17% Similarity=0.078 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 21 RLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 21 ~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
+=++.+...+||+|+++|= +++++ .+.--...+++..+ ..++|+ ++.||-+..
T Consensus 115 ~~l~~i~~~~PDiILLaGG-tDgG~-~~~il~nA~~La~~-~~~~pV-IyAGN~~a~ 167 (457)
T PF13941_consen 115 EDLEEIREIRPDIILLAGG-TDGGN-KEVILHNAEMLAEA-NLRIPV-IYAGNKAAQ 167 (457)
T ss_pred HHHHHHhccCCCEEEEeCC-ccCCc-hHHHHHHHHHHHhC-CCCCcE-EEECCHHHH
Confidence 3345678899999999997 67764 33333344555432 466775 589998864
No 145
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=48.78 E-value=48 Score=25.82 Aligned_cols=52 Identities=12% Similarity=-0.211 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcC--CCEEEEccCCCCC
Q 020182 20 ARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELG--LPWAAVLGNHDQE 77 (330)
Q Consensus 20 ~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~--iP~~~v~GNHD~~ 77 (330)
+.+++.+.+.+||+|+++.=+.... ..+.++++.+.+.. -+..++-|+|-..
T Consensus 40 ~~l~~~~~~~~pdvV~iS~~~~~~~------~~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 40 EEIVEAAKEEDADAIGLSGLLTTHM------TLMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred HHHHHHHHHcCCCEEEEeccccccH------HHHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 3666777889999999987432221 23344444444432 2446799998553
No 146
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=47.12 E-value=25 Score=31.86 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=24.7
Q ss_pred EEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCC
Q 020182 34 EYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQES 78 (330)
Q Consensus 34 vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~ 78 (330)
-++.||.++.+-. +-+.|.-++.--....-.+..+-|||+...
T Consensus 73 YLFLGDyVDRG~~--SvEt~lLLl~lK~rYP~ritLiRGNHEsRq 115 (303)
T KOG0372|consen 73 YLFLGDYVDRGYY--SVETFLLLLALKVRYPDRITLIRGNHESRQ 115 (303)
T ss_pred eEeecchhccccc--hHHHHHHHHHHhhcCcceeEEeeccchhhh
Confidence 4677888877732 233333333211123345889999999763
No 147
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=46.12 E-value=27 Score=31.09 Aligned_cols=42 Identities=14% Similarity=0.051 Sum_probs=24.6
Q ss_pred EEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 34 EYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 34 vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
-|+.||.++.+-. +-+.|--++.-..+..-.+..+-|||+..
T Consensus 76 YiFmGDfVDRGyy--SLEtfT~l~~LkaryP~~ITLlRGNHEsR 117 (306)
T KOG0373|consen 76 YIFMGDFVDRGYY--SLETFTLLLLLKARYPAKITLLRGNHESR 117 (306)
T ss_pred eEEeccccccccc--cHHHHHHHHHHhhcCCceeEEeeccchhh
Confidence 4788898888732 22233222221123344588899999975
No 148
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=46.05 E-value=26 Score=30.72 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=18.0
Q ss_pred HHHHHHhcCCeeEEEeccCCCCCc
Q 020182 232 VLQTLVSLGDIKAVFVGHDHTNDF 255 (330)
Q Consensus 232 ~l~~l~~~~~V~~v~~GH~H~n~~ 255 (330)
.+..+++..+.+.+++||+|....
T Consensus 158 ~~~~~l~~~~~~~iv~GHTh~~~~ 181 (208)
T cd07425 158 HLDKVLERLGAKRMVVGHTPQEGG 181 (208)
T ss_pred HHHHHHHHcCCCeEEEcCeeeecC
Confidence 345556666789999999997654
No 149
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=46.03 E-value=76 Score=23.70 Aligned_cols=44 Identities=11% Similarity=-0.104 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEc
Q 020182 20 ARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVL 71 (330)
Q Consensus 20 ~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~ 71 (330)
+.+++.+.+.+..+|++.+|. +.. .+..+..--.+.+||+.+++
T Consensus 19 kqt~Kai~kg~~~~v~iA~Da-~~~-------vv~~l~~lceek~Ip~v~V~ 62 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAEDV-EVY-------LMTRVLSQINQKNIPVSFFK 62 (84)
T ss_pred HHHHHHHhcCCceEEEEeCCC-CHH-------HHHHHHHHHHHcCCCEEEEC
Confidence 456666777888999999994 221 12233333347899999875
No 150
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=44.57 E-value=76 Score=30.32 Aligned_cols=49 Identities=18% Similarity=-0.007 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEE-EEccCCC
Q 020182 17 LLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWA-AVLGNHD 75 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~-~v~GNHD 75 (330)
+.+..+.+.+.+.+||+|+..||- ...+...+.. ..++||++ +--|++-
T Consensus 80 ~~~~~~~~~~~~~~Pd~vlv~GD~---------~~~la~alaA-~~~~IPv~HveaG~rs 129 (365)
T TIGR03568 80 LTIIGFSDAFERLKPDLVVVLGDR---------FEMLAAAIAA-ALLNIPIAHIHGGEVT 129 (365)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCc---------hHHHHHHHHH-HHhCCcEEEEECCccC
Confidence 344555566778899999999992 1234444432 24789999 5566673
No 151
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=43.93 E-value=76 Score=27.90 Aligned_cols=55 Identities=13% Similarity=-0.029 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHH-cCCCEEEEccCCCCC
Q 020182 17 LLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAME-LGLPWAAVLGNHDQE 77 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~-~~iP~~~v~GNHD~~ 77 (330)
..++++.+.+.....|++++.|= .+- + .+.+.++++.+.+ .++|++.-|||++.-
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS--~gv-t---~~~~~~~v~~ik~~~~lPvilfp~~~~~i 66 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGS--LGI-V---ESNLDQTVKKIKKITNLPVILFPGNVNGL 66 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCc--CCC-C---HHHHHHHHHHHHhhcCCCEEEECCCcccc
Confidence 44455666777788999999885 221 1 2245555665555 689999999999854
No 152
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=43.89 E-value=12 Score=35.44 Aligned_cols=46 Identities=17% Similarity=0.062 Sum_probs=29.5
Q ss_pred Cc-EEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCC
Q 020182 31 WI-YEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQES 78 (330)
Q Consensus 31 pD-~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~ 78 (330)
|+ -.|+.||.++.+.. +.+.+.-+++--...+--|+.+-|||+...
T Consensus 86 p~~~ylFLGDYVDRG~~--slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~ 132 (331)
T KOG0374|consen 86 PDQNYVFLGDYVDRGKQ--SLETICLLFALKIKYPENVFLLRGNHECAS 132 (331)
T ss_pred CcccEEEecccccCCcc--ceEEeehhhhhhhhCCceEEEecccccccc
Confidence 54 67899999999853 222232223221235566999999999874
No 153
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=43.10 E-value=87 Score=25.76 Aligned_cols=53 Identities=8% Similarity=-0.127 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEE-cC--CccCCCCcccHHHHHHHHHhHHHHc--CCCEE
Q 020182 16 KLLAARLLCWVLISQWIYEYH-EG--DNIFGSSTTDVAESMIQAFGPAMEL--GLPWA 68 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD~vV~-tG--Dli~~~~~~~~~~~~~~~l~~l~~~--~iP~~ 68 (330)
...++++...+...+||+|++ .| |+..+....+..+.+.++++.+.+. +++++
T Consensus 37 ~~~~~~~~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~~~~l~~~~~~~~p~~~vi 94 (174)
T cd01841 37 RQYLEHIEPQLIQKNPSKVFLFLGTNDIGKEVSSNQFIKWYRDIIEQIREEFPNTKIY 94 (174)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 344455556677788985544 34 5544432233455666777665542 44444
No 154
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=42.76 E-value=24 Score=32.22 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=23.2
Q ss_pred EEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 34 EYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 34 vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
.++.||.++.+.. +-+...-++..-....--+..+.|||+..
T Consensus 90 ylfmGDyvdrGy~--SvetVS~lva~Kvry~~rvtilrGNHEsr 131 (319)
T KOG0371|consen 90 YLFMGDYVDRGYY--SVETVSLLVALKVRYPDRVTILRGNHESR 131 (319)
T ss_pred eeeeeeecccccc--hHHHHHHHHHhhccccceeEEecCchHHH
Confidence 5677787777632 22222222221112224588999999864
No 155
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=40.85 E-value=31 Score=30.40 Aligned_cols=50 Identities=8% Similarity=0.062 Sum_probs=27.2
Q ss_pred EEEEcCCccCCCCcccHHHHHHHHHhHHH-HcCCCEEEEccCCCCCCCCCHHHHHHHH
Q 020182 33 YEYHEGDNIFGSSTTDVAESMIQAFGPAM-ELGLPWAAVLGNHDQESTMDREELMYFI 89 (330)
Q Consensus 33 ~vV~tGDli~~~~~~~~~~~~~~~l~~l~-~~~iP~~~v~GNHD~~~~~~~~~l~~~~ 89 (330)
=+.+.||+ ++. ...+.++++.+. ..+.-.++..|.==..+..+. +..+++
T Consensus 16 ri~visDi-Hg~-----~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~-~~l~~l 66 (218)
T PRK09968 16 HIWVVGDI-HGE-----YQLLQSRLHQLSFCPETDLLISVGDNIDRGPESL-NVLRLL 66 (218)
T ss_pred eEEEEEec-cCC-----HHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHH-HHHHHH
Confidence 46777994 443 335666665442 235667888886444433333 344444
No 156
>PRK10380 hypothetical protein; Provisional
Probab=39.52 E-value=62 Score=22.23 Aligned_cols=26 Identities=38% Similarity=0.640 Sum_probs=19.3
Q ss_pred CCCCCceEEEEEecCCCCCCcccccceEEEEEc
Q 020182 278 AGWPRRARIILAEAGKGENGWMEVEMIKTWKRL 310 (330)
Q Consensus 278 ~~~~~g~Rv~el~~~~~~~~~~~~~~~~tw~r~ 310 (330)
+.++|-+||+.+. +|. .+...||.-|
T Consensus 5 PpYPReA~iV~ve--kG~-----~g~~vtwyel 30 (63)
T PRK10380 5 PPYPREAYIVTIE--KGK-----PGQTVTWYQL 30 (63)
T ss_pred CCCCcceEEEEee--cCC-----CCceEEEEEe
Confidence 4678999999998 554 3778888433
No 157
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=37.12 E-value=84 Score=25.36 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEc-C--CccCCCCcccHHHHHHHHHhHHHHc--CCCEEEE
Q 020182 17 LLAARLLCWVLISQWIYEYHE-G--DNIFGSSTTDVAESMIQAFGPAMEL--GLPWAAV 70 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD~vV~t-G--Dli~~~~~~~~~~~~~~~l~~l~~~--~iP~~~v 70 (330)
...+.+.+.+...+||+|++. | |+.......+..+.+.++++.+.+. +++++++
T Consensus 27 ~~~~~~~~~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~ 85 (157)
T cd01833 27 QIAAAAADWVLAAKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAANPDVKIIVA 85 (157)
T ss_pred HHHHHhhhccccCCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 334444455667789966653 3 6555433334556677777766554 4445543
No 158
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.99 E-value=96 Score=25.98 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=18.1
Q ss_pred hcCCcEEEEc-C--CccCCCCcccHHHHHHHHHhHHHH--cCCCEEE
Q 020182 28 ISQWIYEYHE-G--DNIFGSSTTDVAESMIQAFGPAME--LGLPWAA 69 (330)
Q Consensus 28 ~~~pD~vV~t-G--Dli~~~~~~~~~~~~~~~l~~l~~--~~iP~~~ 69 (330)
..+||+|++. | |+.......+..+.+.++++.+.+ .+.++++
T Consensus 65 ~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv 111 (191)
T cd01836 65 ETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVV 111 (191)
T ss_pred cCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 4556654432 2 433322222233445555555444 3455443
No 159
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=36.72 E-value=61 Score=29.12 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=25.3
Q ss_pred EEEEcCCccCCCCc----ccHHHHHHHHHhHHHHcCCCEEEEccCCCC
Q 020182 33 YEYHEGDNIFGSST----TDVAESMIQAFGPAMELGLPWAAVLGNHDQ 76 (330)
Q Consensus 33 ~vV~tGDli~~~~~----~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~ 76 (330)
=++++||.+..... ....+.+.+.++.+.++..-..+.|| |+.
T Consensus 120 ~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~~l~~~~~i~pG-H~~ 166 (248)
T TIGR03413 120 PALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDDTLVYCA-HEY 166 (248)
T ss_pred CEEEEcCccccCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEECC-CCc
Confidence 37999998876532 11233444555555555444567888 873
No 160
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=36.64 E-value=64 Score=28.81 Aligned_cols=52 Identities=15% Similarity=0.005 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 20 ARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 20 ~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
.++++.+.....|++++.|=. +-. .+.+.++++.+.+..+|++.-|||++.-
T Consensus 17 ~~~~~~~~~~gtdai~vGGS~--~vt----~~~~~~~v~~ik~~~lPvilfp~~~~~i 68 (223)
T TIGR01768 17 DEIAKAAAESGTDAILIGGSQ--GVT----YEKTDTLIEALRRYGLPIILFPSNPTNV 68 (223)
T ss_pred HHHHHHHHhcCCCEEEEcCCC--ccc----HHHHHHHHHHHhccCCCEEEeCCCcccc
Confidence 345566777789999999942 221 2245666666667789999999999853
No 161
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=36.37 E-value=1.4e+02 Score=24.76 Aligned_cols=24 Identities=13% Similarity=-0.111 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCC
Q 020182 16 KLLAARLLCWVLISQWIYEYHEGD 39 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD~vV~tGD 39 (330)
....+++.+.+.+.+||+|++.|.
T Consensus 49 ~~~~~~l~~~i~~~kP~vI~v~g~ 72 (150)
T PF14639_consen 49 EEDMERLKKFIEKHKPDVIAVGGN 72 (150)
T ss_dssp HHHHHHHHHHHHHH--SEEEE--S
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCC
Confidence 456667777888999999999874
No 162
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=35.85 E-value=1.1e+02 Score=24.63 Aligned_cols=46 Identities=24% Similarity=0.184 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCc-EEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCC
Q 020182 17 LLAARLLCWVLISQWI-YEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNH 74 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD-~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNH 74 (330)
..+..+++.+...++| +|++|||- + |..+++.+.+.++.+. +.|-.
T Consensus 86 ~l~~d~~~~~~~~~~d~ivLvSgD~-------D----f~~~i~~lr~~G~~V~-v~~~~ 132 (149)
T cd06167 86 ALAIDALELAYKRRIDTIVLVSGDS-------D----FVPLVERLRELGKRVI-VVGFE 132 (149)
T ss_pred HHHHHHHHHhhhcCCCEEEEEECCc-------c----HHHHHHHHHHcCCEEE-EEccC
Confidence 3444555666666777 89999982 2 4444555556677664 44444
No 163
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=35.09 E-value=1.5e+02 Score=24.25 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=8.1
Q ss_pred HHHHHHHhHHHHcCCCEEE
Q 020182 51 ESMIQAFGPAMELGLPWAA 69 (330)
Q Consensus 51 ~~~~~~l~~l~~~~iP~~~ 69 (330)
+.+.++++.+.+.+.++++
T Consensus 88 ~~l~~li~~~~~~~~~vil 106 (177)
T cd01822 88 ANLRQMIETAQARGAPVLL 106 (177)
T ss_pred HHHHHHHHHHHHCCCeEEE
Confidence 3344444444444444443
No 164
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=34.75 E-value=55 Score=26.27 Aligned_cols=29 Identities=10% Similarity=-0.182 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCccCCC
Q 020182 15 RKLLAARLLCWVLISQWIYEYHEGDNIFGS 44 (330)
Q Consensus 15 ~~~~~~~~~~~i~~~~pD~vV~tGDli~~~ 44 (330)
.+..+++.++...+. .|+||.||-.--+.
T Consensus 44 d~~~i~~~i~~~~~~-~DlvittGG~g~g~ 72 (133)
T cd00758 44 DADSIRAALIEASRE-ADLVLTTGGTGVGR 72 (133)
T ss_pred CHHHHHHHHHHHHhc-CCEEEECCCCCCCC
Confidence 345555555555443 89999999865554
No 165
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=34.51 E-value=66 Score=29.93 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=29.5
Q ss_pred HHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCC
Q 020182 25 WVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQ 76 (330)
Q Consensus 25 ~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~ 76 (330)
.++.-+||+||+||-+.+.. .|-..+..-.+.=-|+.+.||--+.
T Consensus 291 avL~G~vDaIvLTGGiA~~~-------~f~~~I~~~v~~iapv~v~PGE~El 335 (358)
T COG3426 291 AVLKGKVDAIVLTGGIAYEK-------LFVDAIEDRVSWIAPVIVYPGEDEL 335 (358)
T ss_pred hhcCCCCCEEEEecchhhHH-------HHHHHHHHHHhhhcceEecCCchHH
Confidence 45677999999999886654 2322232222334589999997654
No 166
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=34.48 E-value=1.3e+02 Score=29.24 Aligned_cols=55 Identities=16% Similarity=0.095 Sum_probs=32.4
Q ss_pred chhhHHHHHHHHH----HHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEE-ccCCC
Q 020182 11 PWQLRKLLAARLL----CWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAV-LGNHD 75 (330)
Q Consensus 11 ~~~~~~~~~~~~~----~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v-~GNHD 75 (330)
|.|++...+..++ +.+...+||+|++-||-.. .|...+..+ ..+||++.+ .|+--
T Consensus 69 ~~~tl~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t---------~lA~alaa~-~~~IpV~HvEAGlRt 128 (383)
T COG0381 69 PGQTLGEITGNIIEGLSKVLEEEKPDLVLVHGDTNT---------TLAGALAAF-YLKIPVGHVEAGLRT 128 (383)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhCCCEEEEeCCcch---------HHHHHHHHH-HhCCceEEEeccccc
Confidence 3455544444444 4566789999999999321 233233222 357998765 55543
No 167
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=34.35 E-value=73 Score=26.75 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=24.8
Q ss_pred HHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEcc
Q 020182 24 CWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLG 72 (330)
Q Consensus 24 ~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~G 72 (330)
+.+...+||+|+..+-. . . . ...+.+.+.+||++++.-
T Consensus 63 E~ll~l~PDlii~~~~~---~--~----~--~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 63 ELIVALKPDLVILYGGF---Q--A----Q--TILDKLEQLGIPVLYVNE 100 (186)
T ss_pred HHHhccCCCEEEEecCC---C--c----h--hHHHHHHHcCCCEEEeCC
Confidence 66788999999876531 1 1 0 233344578999988864
No 168
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=34.20 E-value=56 Score=31.19 Aligned_cols=53 Identities=9% Similarity=0.020 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccCCCCccc-HHHHHHHHHhHHHH--cCCCEE
Q 020182 16 KLLAARLLCWVLISQWIYEYHEGDNIFGSSTTD-VAESMIQAFGPAME--LGLPWA 68 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~-~~~~~~~~l~~l~~--~~iP~~ 68 (330)
...++...+.+...+||+||++|=......+.+ ..+++.++...+.+ .++|..
T Consensus 224 m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~H 279 (478)
T KOG4184|consen 224 MRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVH 279 (478)
T ss_pred HHHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchh
Confidence 567778888889999999999996665554332 34456666655532 455543
No 169
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=34.12 E-value=1.5e+02 Score=26.58 Aligned_cols=54 Identities=13% Similarity=-0.041 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHH-HcCCCEEEEccCCCC
Q 020182 17 LLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAM-ELGLPWAAVLGNHDQ 76 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~-~~~iP~~~v~GNHD~ 76 (330)
.....+.+.+....-|+|++.|= .+-. .+.+.++++.+. ..++|++.-||||..
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS--~gvt----~~~~~~~v~~ik~~~~lPvilfP~~~~~ 82 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGS--DGVT----EENVDNVVEAIKERTDLPVILFPGSPSG 82 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCc--cccc----HHHHHHHHHHHHhhcCCCEEEecCChhc
Confidence 34456666777888999999993 2221 234566666666 689999999999974
No 170
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=33.54 E-value=1.8e+02 Score=24.59 Aligned_cols=51 Identities=16% Similarity=0.034 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCcEEEE-cC--CccCCCCcccHHHHHHHHHhHHHHcCCCEE
Q 020182 18 LAARLLCWVLISQWIYEYH-EG--DNIFGSSTTDVAESMIQAFGPAMELGLPWA 68 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD~vV~-tG--Dli~~~~~~~~~~~~~~~l~~l~~~~iP~~ 68 (330)
.++++-+.+...+||+|++ .| |+..+....+..+.+.++++.+.+.+....
T Consensus 59 ~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~i 112 (191)
T PRK10528 59 GLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPL 112 (191)
T ss_pred HHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEE
Confidence 3444545555568886544 33 543322222344556666666555444433
No 171
>COG4380 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.36 E-value=65 Score=27.23 Aligned_cols=60 Identities=17% Similarity=0.067 Sum_probs=34.7
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEc
Q 020182 1 MLSGCFVPNLPWQLRKLLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVL 71 (330)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~ 71 (330)
+|+||++|-.|+... ...+.+|.-|+..=-+-+.......+-.+.+...|+.+.+ +|++|
T Consensus 13 ~ls~c~~~~a~~dyt---------~fk~skp~silv~ppln~spdv~at~g~Lsqvt~PLaEAG--YYV~P 72 (216)
T COG4380 13 ALSACQVQKAPFDYT---------SFKESKPASILVVPPLNESPDVNATWGVLSQVTAPLAEAG--YYVFP 72 (216)
T ss_pred HHhhccCCcCccchh---------hhhhcCCceEEEeCCCCCCCCccchhhhhhhhcchhhhCc--eEEEe
Confidence 479999999986542 2346678644333332222212234566777778887765 44443
No 172
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=32.96 E-value=2.4e+02 Score=22.69 Aligned_cols=42 Identities=12% Similarity=-0.137 Sum_probs=25.5
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHhcCCcEEEEcCCccCC
Q 020182 2 LSGCFVPNLPWQLRKLLAARLLCWVLISQWIYEYHEGDNIFG 43 (330)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vV~tGDli~~ 43 (330)
|+|..-++.+-......+.++++...+.....+|++|.....
T Consensus 6 LG~~~~~~~~~~~~~~R~~~a~~l~~~~~~~~ii~sGg~~~~ 47 (150)
T cd06259 6 LGGGVNGDGPSPILAERLDAAAELYRAGPAPKLIVSGGQGPG 47 (150)
T ss_pred eCCccCCCCCChHHHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Confidence 444444444444445555555655556566788889887776
No 173
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.48 E-value=1.5e+02 Score=24.97 Aligned_cols=50 Identities=14% Similarity=-0.023 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCcEEEEc-C--CccCCCCc------------ccHHHHHHHHHhHHHHcCCCEEEE
Q 020182 21 RLLCWVLISQWIYEYHE-G--DNIFGSST------------TDVAESMIQAFGPAMELGLPWAAV 70 (330)
Q Consensus 21 ~~~~~i~~~~pD~vV~t-G--Dli~~~~~------------~~~~~~~~~~l~~l~~~~iP~~~v 70 (330)
++...+...+||+|+++ | |+...... ....+.+.++++.+.+.+++++++
T Consensus 50 ~~~~~l~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili 114 (200)
T cd01829 50 KLKELIAEEKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWV 114 (200)
T ss_pred HHHHHHhcCCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 45556677899987766 2 43321111 122345566666666667887655
No 174
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=32.38 E-value=1.9e+02 Score=22.92 Aligned_cols=45 Identities=9% Similarity=-0.009 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHH-HcCCCEEEEcc
Q 020182 20 ARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAM-ELGLPWAAVLG 72 (330)
Q Consensus 20 ~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~-~~~iP~~~v~G 72 (330)
..+.+.+.+.+..|||++.|. +. . .+...+..+. +.+||+.+++-
T Consensus 33 ~e~~Kai~~g~a~LVviA~Dv-~P---~----~~~~~l~~lc~~~~vpyv~V~s 78 (116)
T COG1358 33 NEVTKAIERGKAKLVVIAEDV-SP---E----ELVKHLPALCEEKNVPYVYVGS 78 (116)
T ss_pred HHHHHHHHcCCCcEEEEecCC-CH---H----HHHHHHHHHHHhcCCCEEEeCC
Confidence 456667778889999999994 21 1 1223333332 58999998764
No 175
>KOG3167 consensus Box H/ACA snoRNP component, involved in ribosomal RNA pseudouridinylation [RNA processing and modification]
Probab=32.21 E-value=67 Score=26.30 Aligned_cols=45 Identities=16% Similarity=0.066 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEcc
Q 020182 21 RLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLG 72 (330)
Q Consensus 21 ~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~G 72 (330)
.+.+.+++-+=-++|++||..- .|-..++--+- .+++||+.++|-
T Consensus 66 evqK~vrkGeKGl~VlAgd~sP----iDvi~HlP~lC---Ed~~vPYvy~ps 110 (153)
T KOG3167|consen 66 EVQKRVRKGEKGLCVLAGDTSP----IDVITHLPALC---EDRGVPYVYTPS 110 (153)
T ss_pred HHHHHHhcCCcceEEEecCCcc----HHHHhccchhh---hccCCCcccccc
Confidence 3444444444569999999632 22233332222 268999987763
No 176
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=31.82 E-value=82 Score=25.76 Aligned_cols=68 Identities=10% Similarity=-0.046 Sum_probs=37.1
Q ss_pred CCCCCCCCchhhHHHHH-HHHHHHHH--hcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCC
Q 020182 3 SGCFVPNLPWQLRKLLA-ARLLCWVL--ISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHD 75 (330)
Q Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~~~i~--~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD 75 (330)
.||||+|..|+..-=+= .++.+.+. ....|.|++.+|--..- ++= -.=+|++..+.....+++.+ |++
T Consensus 41 tG~NiEnasy~~t~CAErsAI~~ais~G~~~~~~v~v~~~~~~~~-sPC--G~CRQ~i~Ef~~~d~~ii~~--~~~ 111 (134)
T COG0295 41 TGANVENASYGLTVCAERSAIFKAISEGKRKFDAVVVVADTGKPV-SPC--GACRQVLAEFCGDDTLIILL--PKD 111 (134)
T ss_pred EEEeeecccccchhhHHHHHHHHHHHcCCCcEEEEEEEcCCCCCc-CCc--HHHHHHHHHhcCCCceEEEe--cCC
Confidence 58999999998862211 12222222 34457888888852222 121 12244555555556677766 444
No 177
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=31.48 E-value=1.7e+02 Score=22.27 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccC
Q 020182 20 ARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGN 73 (330)
Q Consensus 20 ~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GN 73 (330)
..+++.+...+.-+|++..|. .. +....+.. .-...+||++...|+
T Consensus 22 ~~v~kai~~gkaklViiA~D~-~~----~~~~~i~~---~c~~~~Ip~~~~~~t 67 (99)
T PRK01018 22 KRTIKAIKLGKAKLVIVASNC-PK----DIKEDIEY---YAKLSGIPVYEYEGS 67 (99)
T ss_pred HHHHHHHHcCCceEEEEeCCC-CH----HHHHHHHH---HHHHcCCCEEEECCC
Confidence 345666777788999999994 11 11222222 223579999765554
No 178
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=30.02 E-value=97 Score=23.06 Aligned_cols=45 Identities=16% Similarity=0.039 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEc
Q 020182 20 ARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVL 71 (330)
Q Consensus 20 ~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~ 71 (330)
..+.+.+...+.-+||+..|.-... .......+. .+.+||++.++
T Consensus 21 ~~v~k~l~~~~~~lvilA~d~~~~~-----~~~~l~~~c--~~~~Ip~~~~~ 65 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAEDCSPDS-----IKKHLPALC--EEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHTTCESEEEEETTSSSGH-----HHHHHHHHH--HHTTEEEEEES
T ss_pred HHHHHHHHcCCCcEEEEcCCCChhh-----hcccchhhe--eccceeEEEEC
Confidence 4566777788899999999953332 222112221 36899998776
No 179
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=30.02 E-value=2.5e+02 Score=25.31 Aligned_cols=8 Identities=38% Similarity=0.493 Sum_probs=3.7
Q ss_pred cEEEEcCC
Q 020182 32 IYEYHEGD 39 (330)
Q Consensus 32 D~vV~tGD 39 (330)
..+|++||
T Consensus 83 ~~ilvSGg 90 (239)
T PRK10834 83 NYLLLSGD 90 (239)
T ss_pred CEEEEeCC
Confidence 34444444
No 180
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=29.87 E-value=1.3e+02 Score=26.58 Aligned_cols=54 Identities=19% Similarity=0.092 Sum_probs=30.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEE
Q 020182 7 VPNLPWQLRKLLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWA 68 (330)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~ 68 (330)
.||.=|..+-.+ +.+...+-+.+.++++||..... |..-..|.+.+.+.+||--
T Consensus 73 ~~N~yy~~Ri~a---A~~ly~~gKV~~LLlSGDN~~~s-----YnEp~tM~kdL~~~GVp~~ 126 (235)
T COG2949 73 PPNRYYTYRIDA---AIALYKAGKVNYLLLSGDNATVS-----YNEPRTMRKDLIAAGVPAK 126 (235)
T ss_pred CccHhHHHHHHH---HHHHHhcCCeeEEEEecCCCccc-----ccchHHHHHHHHHcCCCHH
Confidence 344434444333 33445567789999999964443 2223444555667888843
No 181
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=29.86 E-value=2.1e+02 Score=29.98 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=18.9
Q ss_pred EEEcCCccCCCCcccHHHHHHHHHhHHHHcCC
Q 020182 34 EYHEGDNIFGSSTTDVAESMIQAFGPAMELGL 65 (330)
Q Consensus 34 vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~i 65 (330)
+-.|||+.+...+.-+-+.+..+.+.+.+.++
T Consensus 701 i~YtGDv~dp~rtKY~L~YY~nlad~lV~agt 732 (1176)
T KOG0369|consen 701 ICYTGDVLDPSRTKYNLDYYLNLADKLVKAGT 732 (1176)
T ss_pred EeeccccCCcccccccHHHHHHHHHHHHhccC
Confidence 67899999998644223333444444444443
No 182
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=29.64 E-value=95 Score=29.00 Aligned_cols=42 Identities=12% Similarity=-0.164 Sum_probs=26.5
Q ss_pred HHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEc
Q 020182 23 LCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVL 71 (330)
Q Consensus 23 ~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~ 71 (330)
++.+...+||+|+.++....... -.+.++.+.+.++|++++.
T Consensus 84 ~E~l~~l~PDLIi~~~~~~~~~~-------~~~~~~~l~~~gipvv~~~ 125 (342)
T cd01139 84 VEKVLTLKPDLVILNIWAKTTAE-------ESGILEKLEQAGIPVVFVD 125 (342)
T ss_pred HHHHhhcCCCEEEEeccccccch-------hhHHHHHHHHcCCcEEEEe
Confidence 35677889999998765322110 1223444456789998885
No 183
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=28.27 E-value=1e+02 Score=24.48 Aligned_cols=43 Identities=21% Similarity=0.060 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCc-EEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEc
Q 020182 18 LAARLLCWVLISQWI-YEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVL 71 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD-~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~ 71 (330)
.+..++..+...++| +|++||| .+ |..+++.+.+.+..+.++.
T Consensus 83 l~~d~~~~~~~~~~d~ivLvSgD-------~D----f~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 83 LAVDILELAYENPPDTIVLVSGD-------SD----FAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp HHHHHHHHG--GG-SEEEEE----------GG----GHHHHHHHHHH--EEEEEE
T ss_pred HHHHHHHHhhccCCCEEEEEECc-------HH----HHHHHHHHHHcCCEEEEEE
Confidence 334455555555566 9999999 11 4455555566787776554
No 184
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=28.15 E-value=2.2e+02 Score=26.49 Aligned_cols=47 Identities=13% Similarity=-0.094 Sum_probs=28.5
Q ss_pred CcEEEEcCCccCCC-----CcccHH-HHHHHH----HhHH--HHcCCCEEEEccCCCCC
Q 020182 31 WIYEYHEGDNIFGS-----STTDVA-ESMIQA----FGPA--MELGLPWAAVLGNHDQE 77 (330)
Q Consensus 31 pD~vV~tGDli~~~-----~~~~~~-~~~~~~----l~~l--~~~~iP~~~v~GNHD~~ 77 (330)
|-.+|++|+.+... ...+.+ +.|+++ ++.+ ...+.-+.+|||-.|..
T Consensus 64 P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 64 PVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKLILEHCYLIFIPGINDPC 122 (291)
T ss_pred CeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChHHHhcCeEEEECCCCCCC
Confidence 77999999988774 111122 223222 2211 23457799999999973
No 185
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=27.80 E-value=2.6e+02 Score=21.04 Aligned_cols=21 Identities=5% Similarity=-0.162 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCcEEEEcCC
Q 020182 19 AARLLCWVLISQWIYEYHEGD 39 (330)
Q Consensus 19 ~~~~~~~i~~~~pD~vV~tGD 39 (330)
.+.+++.+...++|+||+.--
T Consensus 91 ~~~i~~~~~~~~~dliv~G~~ 111 (140)
T PF00582_consen 91 ADAIIEFAEEHNADLIVMGSR 111 (140)
T ss_dssp HHHHHHHHHHTTCSEEEEESS
T ss_pred chhhhhccccccceeEEEecc
Confidence 345556666677777777654
No 186
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=27.74 E-value=5.4e+02 Score=25.14 Aligned_cols=69 Identities=9% Similarity=-0.083 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHHHHHHHH
Q 020182 18 LAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFI 89 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~~l~~~~ 89 (330)
..+.+.+.+...++|-||+..-..-.....+.+ .+.+.+. .+.+||+..+=|..=.....+.+++...+
T Consensus 338 R~~~l~~l~ke~~aDGVI~~~~~~C~~~~~e~~-~~~~~l~--e~~GIP~L~iE~D~~d~r~~d~gQ~~TRi 406 (413)
T TIGR02260 338 RVDLLEKYINEYEADGLLINSIKSCNSFSAGQL-LMMREIE--KRTGKPAAFIETDLVDPRYFSAANVKNRL 406 (413)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCcchhhhH-HHHHHHH--HHcCCCEEEEEcCCCCcccCCHHHHHHHH
Confidence 445666778889999999877554443211111 2223222 24799999998886554444566654433
No 187
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=26.66 E-value=2.7e+02 Score=27.13 Aligned_cols=83 Identities=24% Similarity=0.223 Sum_probs=51.4
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhcccccccCCCCceEEEEecCCCCccccccCCccccccccCcCCcCChHHHHHHHhcCC
Q 020182 162 GYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGD 241 (330)
Q Consensus 162 g~i~~~Ql~WL~~~l~~l~~~~~~~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~G~~~e~~~~~~~n~~~l~~l~~~~~ 241 (330)
|.++++|..-|.+.+++++++ .....++|.-+|+.... .+++ +.
T Consensus 295 G~L~~~q~~~~~~l~~~~~~~---------~p~L~l~~qni~~~~~~---------------------~~~l------pa 338 (395)
T PRK15367 295 GVLDESHQRILQETLAALKKK---------DPALSLIYQDIAPSHDE---------------------SKYL------PA 338 (395)
T ss_pred EecCHHHHHHHHHHHHHHHhh---------CCCceEEEcCCCCCcch---------------------hhcC------cc
Confidence 568999999999999999764 23366777766664311 1121 33
Q ss_pred eeEEEeccCCCCCcccCCCCeEEEEeCcccCCCCCCCCCCCceEEEEEec
Q 020182 242 IKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYHGYGKAGWPRRARIILAEA 291 (330)
Q Consensus 242 V~~v~~GH~H~n~~~~~~~Gi~l~~~~~tg~~~yg~~~~~~g~Rv~el~~ 291 (330)
+.+=+.|-.|. -|...-||..| ..|. -++.||||+-|..
T Consensus 339 ~i~g~gGn~~~-pyV~L~Ng~RL---------~~Gs-~L~nGyrV~~I~~ 377 (395)
T PRK15367 339 PVAGFVQSRHG-NYLLLTNKERL---------RVGA-LLPNGGEIVHLSA 377 (395)
T ss_pred ceEEeecCCCC-CeEEeeCCcCc---------cCCC-CCCCceEEEEEcC
Confidence 44445555553 44444566555 3332 3568999999984
No 188
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=26.30 E-value=1e+02 Score=27.80 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=25.5
Q ss_pred EEEcCCccCCCCc----ccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 34 EYHEGDNIFGSST----TDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 34 vV~tGDli~~~~~----~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
++++||.+..+.. ....+.+.+.++.+.++.....+.|| |+..
T Consensus 122 ~lFtGDtlf~~g~gr~f~g~~~~~~~Sl~kl~~l~~~t~i~pg-H~y~ 168 (251)
T PRK10241 122 YLFCGDTLFSGGCGRLFEGTASQMYQSLKKINALPDDTLICCA-HEYT 168 (251)
T ss_pred cEEEcCeeccCCcCCCCCCCHHHHHHHHHHHHcCCCCEEEECC-CCCh
Confidence 6999998777532 11233444555555555555666778 8743
No 189
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.10 E-value=2.1e+02 Score=24.31 Aligned_cols=19 Identities=16% Similarity=0.058 Sum_probs=9.3
Q ss_pred HHHHHHHhHHHHcCCCEEE
Q 020182 51 ESMIQAFGPAMELGLPWAA 69 (330)
Q Consensus 51 ~~~~~~l~~l~~~~iP~~~ 69 (330)
+.+.++++.+.+.++++++
T Consensus 106 ~~l~~ii~~~~~~~~~vil 124 (204)
T cd01830 106 AGYRQLIRRAHARGIKVIG 124 (204)
T ss_pred HHHHHHHHHHHHCCCeEEE
Confidence 3445555544445555443
No 190
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=26.05 E-value=1.6e+02 Score=26.40 Aligned_cols=48 Identities=19% Similarity=0.070 Sum_probs=34.2
Q ss_pred HHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 24 CWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 24 ~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
+.+.....|++++.|=. +-. .+.+.++++.+.+.++|++.-|||++.-
T Consensus 26 ~~~~~~gtdai~vGGS~--~vt----~~~~~~~v~~ik~~~lPvilfp~~~~~i 73 (232)
T PRK04169 26 EAICESGTDAIIVGGSD--GVT----EENVDELVKAIKEYDLPVILFPGNIEGI 73 (232)
T ss_pred HHHHhcCCCEEEEcCCC--ccc----hHHHHHHHHHHhcCCCCEEEeCCCcccc
Confidence 45666788999999943 211 2346666666666789999999999854
No 191
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=25.99 E-value=1.8e+02 Score=24.39 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=30.9
Q ss_pred EEEcCCccCCCCcc----cHHHHHHHHHhHHHHcCCCEEEEccCCCCCCC
Q 020182 34 EYHEGDNIFGSSTT----DVAESMIQAFGPAMELGLPWAAVLGNHDQEST 79 (330)
Q Consensus 34 vV~tGDli~~~~~~----~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~ 79 (330)
+-+.+|+.++.++. ++...+.++.+.+.+.+...+.|-|.=|..+.
T Consensus 48 i~l~~~v~F~~~sa~L~~~~~~~L~~ia~~l~~~~~~~v~I~GhTD~~G~ 97 (160)
T PRK09967 48 LGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGE 97 (160)
T ss_pred EEcCCceeeCCCccccCHHHHHHHHHHHHHHHhCCCceEEEEEEcCCCCC
Confidence 34667777766432 35566777777666665556789999997654
No 192
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=25.91 E-value=39 Score=33.14 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=26.7
Q ss_pred EEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCC
Q 020182 34 EYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 77 (330)
Q Consensus 34 vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~ 77 (330)
-||.||.|+.+.. +-+.+.-++.-+.-...-++.--|||+.-
T Consensus 196 YvFNGDFVDRGk~--siEvLmiL~a~~lv~P~~~~LNRGNHED~ 237 (631)
T KOG0377|consen 196 YVFNGDFVDRGKR--SIEVLMILFALYLVYPNAVHLNRGNHEDH 237 (631)
T ss_pred eeecCchhhcccc--chhhHHHHHHHHhcCchhhhccCCchHHH
Confidence 3789999998842 33334333333333445688899999864
No 193
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=25.01 E-value=1.1e+02 Score=26.76 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=23.5
Q ss_pred cCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCE--------------EEEccCCCCC
Q 020182 29 SQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPW--------------AAVLGNHDQE 77 (330)
Q Consensus 29 ~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~--------------~~v~GNHD~~ 77 (330)
..||+|++++ . .... +++.+....+||. +.+|||.|..
T Consensus 107 ~~Pdlliv~d----p---~~~~----~Av~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds~ 158 (196)
T TIGR01012 107 REPEVVVVTD----P---RADH----QALKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGR 158 (196)
T ss_pred CCCCEEEEEC----C---cccc----HHHHHHHHcCCCEEEEeeCCCCCccCCEEECCCCchH
Confidence 4588888862 1 1112 2333334678997 7789999865
No 194
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=24.80 E-value=2.3e+02 Score=26.80 Aligned_cols=66 Identities=15% Similarity=-0.044 Sum_probs=43.9
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHH-HHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEc---cCCCC
Q 020182 2 LSGCFVPNLPWQLRKLLAARLLCW-VLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVL---GNHDQ 76 (330)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~---GNHD~ 76 (330)
+|||-|-+.-.+-....++.+... |.+.+.+.||..|+= --|..++...+++.-.. +++++ |=-|.
T Consensus 220 ~sgC~vdTpSIsqldEnla~~~htiI~~f~vnivvVlgsE-------rLy~s~k~~~~~~~~n~--iffiskldG~~~v 289 (424)
T COG5623 220 LSGCPVDTPSISQLDENLAAFYHTIIKRFEVNIVVVLGSE-------RLYHSLKVIAEKLMINR--IFFISKLDGFVEV 289 (424)
T ss_pred eecCccCCcchhhhhHHHHHHHHHHHHheeeeEEEEEcch-------HHHHHHHHHHhHHhhhh--eeeecccCCeeeh
Confidence 689999997777766666777664 556788999999972 23556666666543333 56666 54443
No 195
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=24.62 E-value=90 Score=27.28 Aligned_cols=30 Identities=10% Similarity=-0.160 Sum_probs=22.6
Q ss_pred chhhHHHHHHHHHHHHHhcCCcEEEEcCCc
Q 020182 11 PWQLRKLLAARLLCWVLISQWIYEYHEGDN 40 (330)
Q Consensus 11 ~~~~~~~~~~~~~~~i~~~~pD~vV~tGDl 40 (330)
.|.++...-+++++.+...+||+||+.|=|
T Consensus 60 ~~~~r~~~d~~l~~~l~~~~~dlvvLAGyM 89 (200)
T COG0299 60 EFPSREAFDRALVEALDEYGPDLVVLAGYM 89 (200)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCEEEEcchH
Confidence 345555566677788889999999999943
No 196
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=23.75 E-value=3.1e+02 Score=22.51 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=7.9
Q ss_pred HHHHHHHHhHHHHcCCC
Q 020182 50 AESMIQAFGPAMELGLP 66 (330)
Q Consensus 50 ~~~~~~~l~~l~~~~iP 66 (330)
.+.+.++++.+...+.+
T Consensus 91 ~~~~~~~i~~i~~~~~~ 107 (185)
T cd01832 91 RADLEEAVRRLRAAGAR 107 (185)
T ss_pred HHHHHHHHHHHHhCCCE
Confidence 34455555554433443
No 197
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.70 E-value=1.6e+02 Score=29.33 Aligned_cols=57 Identities=12% Similarity=-0.084 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCC-cEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCC
Q 020182 16 KLLAARLLCWVLISQW-IYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHD 75 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~p-D~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD 75 (330)
..++++|...-.+..| |+++..|++.... +.+ ..+.+...-.....||.|++-+|--
T Consensus 19 ~eli~rI~~v~Kk~GpFd~liCvGnfF~~~-~~~--~e~~~ykng~~~vPiptY~~g~~~~ 76 (528)
T KOG2476|consen 19 DELIKRIQKVNKKSGPFDLLICVGNFFGHD-TQN--AEVEKYKNGTKKVPIPTYFLGDNAN 76 (528)
T ss_pred HHHHHHHHHHhhcCCCceEEEEecccCCCc-cch--hHHHHHhcCCccCceeEEEecCCCC
Confidence 4556666555556665 9999999987753 222 1344444444467899999888853
No 198
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=23.62 E-value=73 Score=29.32 Aligned_cols=22 Identities=9% Similarity=-0.041 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCcEEEEcCC
Q 020182 18 LAARLLCWVLISQWIYEYHEGD 39 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD~vV~tGD 39 (330)
--+++...+.+.+||.+|+||-
T Consensus 141 qp~~i~~Ll~~~~PDIlViTGH 162 (283)
T TIGR02855 141 MPEKVLDLIEEVRPDILVITGH 162 (283)
T ss_pred chHHHHHHHHHhCCCEEEEeCc
Confidence 3456777778889999999995
No 199
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=23.40 E-value=2.7e+02 Score=20.39 Aligned_cols=44 Identities=14% Similarity=-0.108 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEc
Q 020182 20 ARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVL 71 (330)
Q Consensus 20 ~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~ 71 (330)
..+++.+...+..+|++..|.-.. . ..++..--...+||+..++
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~-----~---~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADPR-----L---TEKVEALANEKGVPVSKVD 60 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHH-----H---HHHHHHHHHHcCCCEEEEC
Confidence 455666777888999999995221 1 1222222235789998765
No 200
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=22.85 E-value=77 Score=29.30 Aligned_cols=23 Identities=4% Similarity=-0.204 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCC
Q 020182 17 LLAARLLCWVLISQWIYEYHEGD 39 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD~vV~tGD 39 (330)
.--.++.+.+...+||.+|+||-
T Consensus 141 eqp~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 141 EQPEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred HhhHHHHHHHHHcCCCEEEEeCc
Confidence 33456667777889999999994
No 201
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=22.56 E-value=2.3e+02 Score=23.70 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=28.8
Q ss_pred HHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccC
Q 020182 24 CWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGN 73 (330)
Q Consensus 24 ~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GN 73 (330)
+.+...+||+||+.-|-.+-. +.+ .++..+.++++|+.++.==
T Consensus 72 ~~l~~~~~D~ii~VvDa~~l~------r~l-~l~~ql~e~g~P~vvvlN~ 114 (156)
T PF02421_consen 72 DYLLSEKPDLIIVVVDATNLE------RNL-YLTLQLLELGIPVVVVLNK 114 (156)
T ss_dssp HHHHHTSSSEEEEEEEGGGHH------HHH-HHHHHHHHTTSSEEEEEET
T ss_pred HHHhhcCCCEEEEECCCCCHH------HHH-HHHHHHHHcCCCEEEEEeC
Confidence 444578899999999965421 223 3445566789999877633
No 202
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=22.12 E-value=3.2e+02 Score=26.89 Aligned_cols=51 Identities=8% Similarity=-0.038 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEE
Q 020182 14 LRKLLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAV 70 (330)
Q Consensus 14 ~~~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v 70 (330)
+.+++...+.+.+...++|.||+|.= - +.. .+.-.-++..+.+.+||+..+
T Consensus 320 ~a~~~g~eIa~~Lk~dgVDAVILTst--C-gtC---~r~~a~m~keiE~~GiPvv~~ 370 (431)
T TIGR01918 320 ESKQFAKEFVVELKQGGVDAVILTST--U-GTC---TRCGATMVKEIERAGIPVVHM 370 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCC--C-Ccc---hhHHHHHHHHHHHcCCCEEEE
Confidence 34677778888889999999999952 1 122 223344555666899999754
No 203
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=21.93 E-value=3e+02 Score=25.42 Aligned_cols=48 Identities=23% Similarity=0.180 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccC
Q 020182 16 KLLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGN 73 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GN 73 (330)
...+.++.+.+...+||+|+..||-. . .+..++.. ...++|++.+.|+
T Consensus 74 ~~~~~~l~~~l~~~~pDvV~~~g~~~-~--------~~~~~~aa-~~~~iPvv~~~~g 121 (363)
T cd03786 74 AGLLIGLEAVLLEEKPDLVLVLGDTN-E--------TLAAALAA-FKLGIPVAHVEAG 121 (363)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCch-H--------HHHHHHHH-HHcCCCEEEEecc
Confidence 33455666777788999999998731 0 12222221 2358999988775
No 204
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=21.71 E-value=1e+02 Score=27.48 Aligned_cols=54 Identities=13% Similarity=-0.081 Sum_probs=36.3
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCC--CEEEEccC
Q 020182 4 GCFVPNLPWQLRKLLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGL--PWAAVLGN 73 (330)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~i--P~~~v~GN 73 (330)
||+||.. ..+..+.+.+||+|-.+.=++..- ..+.++++.|.+.++ |+.+..|=
T Consensus 139 G~dvP~e----------~fve~a~e~k~d~v~~SalMTttm------~~~~~viE~L~eeGiRd~v~v~vGG 194 (227)
T COG5012 139 GRDVPVE----------EFVEKAKELKPDLVSMSALMTTTM------IGMKDVIELLKEEGIRDKVIVMVGG 194 (227)
T ss_pred CCCCCHH----------HHHHHHHHcCCcEEechHHHHHHH------HHHHHHHHHHHHcCCccCeEEeecC
Confidence 7888887 677778888999998887554332 235566666655444 67766553
No 205
>PRK14048 ferrichrome/ferrioxamine B periplasmic transporter; Provisional
Probab=21.56 E-value=1.9e+02 Score=27.45 Aligned_cols=42 Identities=12% Similarity=-0.115 Sum_probs=25.4
Q ss_pred HHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEcc
Q 020182 24 CWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLG 72 (330)
Q Consensus 24 ~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~G 72 (330)
+.|...+||+||.++-..... . . ....+.+.+.+||++++..
T Consensus 115 E~Ilal~PDLVi~~~~~~~~~---~-~---~~~~~~L~~~Gipvv~~~~ 156 (374)
T PRK14048 115 ETILTLKADLAILANWQADTE---A-G---QRAIEYLESIGVPVIVVDF 156 (374)
T ss_pred HHHhhcCCCEEEecCcccccc---c-c---hhHHHHHHHCCCCEEEEeC
Confidence 667788999998764211111 0 0 1234445578999988864
No 206
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=21.32 E-value=2.4e+02 Score=23.35 Aligned_cols=41 Identities=7% Similarity=-0.167 Sum_probs=20.5
Q ss_pred CCcEEEEcC---CccCCCC-----cccHHHHHHHHHhHHHH--cCCCEEEE
Q 020182 30 QWIYEYHEG---DNIFGSS-----TTDVAESMIQAFGPAME--LGLPWAAV 70 (330)
Q Consensus 30 ~pD~vV~tG---Dli~~~~-----~~~~~~~~~~~l~~l~~--~~iP~~~v 70 (330)
+||+|++.- |+..... .....+.+.++++.+.+ .+.+++++
T Consensus 63 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~ 113 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQPQHVPLDEYKENLRKIVSHLKSLSPKTKVILI 113 (199)
T ss_pred CceEEEEEecCccccCCCCCCcccHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 678666644 5554331 11233455666665554 45555444
No 207
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=21.27 E-value=2.6e+02 Score=22.03 Aligned_cols=45 Identities=13% Similarity=-0.037 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEc
Q 020182 20 ARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVL 71 (330)
Q Consensus 20 ~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~ 71 (330)
..+++.+...+.-+||+.+|..... ....+..+- ...+||+.++.
T Consensus 32 ~~v~kaikkgka~LVilA~D~s~~~----~~~~i~~lc---~~~~Ip~~~~~ 76 (117)
T TIGR03677 32 NEVTKAVERGIAKLVVIAEDVEPPE----IVAHLPALC---EEKGIPYVYVK 76 (117)
T ss_pred HHHHHHHHcCCccEEEEeCCCCcHH----HHHHHHHHH---HHcCCCEEEeC
Confidence 3456667777889999999953221 112232222 35799976543
No 208
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.19 E-value=2.8e+02 Score=26.41 Aligned_cols=68 Identities=18% Similarity=-0.031 Sum_probs=34.4
Q ss_pred CCCCCCchhhH---HHHHHH-HHHHHHhcCCcEEEEc--CCccCCCC------cccHHHHHHHHHhHHH-HcCCCEEEEc
Q 020182 5 CFVPNLPWQLR---KLLAAR-LLCWVLISQWIYEYHE--GDNIFGSS------TTDVAESMIQAFGPAM-ELGLPWAAVL 71 (330)
Q Consensus 5 ~~~~~~~~~~~---~~~~~~-~~~~i~~~~pD~vV~t--GDli~~~~------~~~~~~~~~~~l~~l~-~~~iP~~~v~ 71 (330)
.|+|=.|.... ..+++. ++..+...+||+||+. .|.-.+.+ +...+..+-+.+..+. ..+.|++++.
T Consensus 210 vNiPLp~g~~d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vl 289 (340)
T COG0123 210 VNIPLPPGTGDDSYLEALEEIVLPLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVL 289 (340)
T ss_pred EeeecCCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEe
Confidence 34554444443 345555 3446667899966542 34333321 1223444444444332 3467888877
Q ss_pred c
Q 020182 72 G 72 (330)
Q Consensus 72 G 72 (330)
|
T Consensus 290 e 290 (340)
T COG0123 290 E 290 (340)
T ss_pred c
Confidence 5
No 209
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.02 E-value=4e+02 Score=22.27 Aligned_cols=60 Identities=8% Similarity=0.054 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCc--EEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCCCCCCCCHH
Q 020182 16 KLLAARLLCWVLISQWI--YEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDRE 83 (330)
Q Consensus 16 ~~~~~~~~~~i~~~~pD--~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD~~~~~~~~ 83 (330)
+.+++.+++.|.+..-. +++.|---+.... -+++.+.+.+ .+...||..++|- ..+++.+
T Consensus 88 ~~~le~ViEdIEk~eG~rPLi~~TsAr~~~N~--isy~~lr~~I---~e~dkp~LilfGT---GwGlpde 149 (190)
T COG4752 88 AYTLEEVIEDIEKEEGRRPLIVGTSARTYPNT--ISYSWLRNEI---QERDKPWLILFGT---GWGLPDE 149 (190)
T ss_pred HHHHHHHHHHHHhhcCCCceEEeccccccCCc--ccHHHHHHHH---hhcCCcEEEEecC---CCCCCHH
Confidence 56788889888776543 6777655444432 2344454444 3678899999996 3455544
No 210
>PF13117 Cag12: Cag pathogenicity island protein Cag12
Probab=20.94 E-value=41 Score=26.62 Aligned_cols=13 Identities=54% Similarity=0.797 Sum_probs=9.4
Q ss_pred CCCCCCCCCCchh
Q 020182 1 MLSGCFVPNLPWQ 13 (330)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (330)
||+||.+|-.|-+
T Consensus 6 ~L~gCSSpP~P~~ 18 (113)
T PF13117_consen 6 MLSGCSSPPEPPP 18 (113)
T ss_pred eehhcCCCCCCCC
Confidence 6888887777644
No 211
>PRK11914 diacylglycerol kinase; Reviewed
Probab=20.94 E-value=2.4e+02 Score=26.02 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCc-EEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEcc
Q 020182 18 LAARLLCWVLISQWI-YEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLG 72 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD-~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~G 72 (330)
.+.++.+.+...++| +|+..|| . .+.+++..+...++|+.++|+
T Consensus 52 ~~~~~a~~~~~~~~d~vvv~GGD-----G------Ti~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 52 DARHLVAAALAKGTDALVVVGGD-----G------VISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEECCc-----h------HHHHHhHHhccCCCcEEEEeC
Confidence 344555555567788 5566666 2 244555555567899999993
No 212
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=20.80 E-value=2.4e+02 Score=25.86 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHh
Q 020182 17 LLAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFG 58 (330)
Q Consensus 17 ~~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~ 58 (330)
.++..+++.+...+-.||||+-||..... .++++.++.+++
T Consensus 125 ~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~g-d~~yK~LKs~Le 165 (287)
T COG2607 125 ATLPDLVELLRARPEKFILFCDDLSFEEG-DDAYKALKSALE 165 (287)
T ss_pred hhHHHHHHHHhcCCceEEEEecCCCCCCC-chHHHHHHHHhc
Confidence 35566777666666679999999999985 556777777665
No 213
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=20.71 E-value=4.2e+02 Score=20.70 Aligned_cols=48 Identities=8% Similarity=-0.231 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcC--CCEEEEccC
Q 020182 20 ARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELG--LPWAAVLGN 73 (330)
Q Consensus 20 ~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~--iP~~~v~GN 73 (330)
+.+++.+.+.+||+|++++-+.. ....+.++++.+.+.+ -+..++-|+
T Consensus 40 e~~~~~a~~~~~d~V~iS~~~~~------~~~~~~~~~~~L~~~~~~~i~i~~GG~ 89 (122)
T cd02071 40 EEIVEAAIQEDVDVIGLSSLSGG------HMTLFPEVIELLRELGAGDILVVGGGI 89 (122)
T ss_pred HHHHHHHHHcCCCEEEEcccchh------hHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 36677788899999999986421 1223445555554442 234567777
No 214
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=20.06 E-value=3e+02 Score=24.80 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=21.1
Q ss_pred EEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEcc
Q 020182 33 YEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLG 72 (330)
Q Consensus 33 ~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~G 72 (330)
.++.+||-..-+ ....+++.+.+.++++-++||
T Consensus 84 v~L~sGDP~~yg-------~~~~l~~~l~~~~i~veiiPG 116 (257)
T PRK15473 84 VRLQTGDVSLYG-------SIREQGEELTKRGIDFQVVPG 116 (257)
T ss_pred EEEeCcCchhhh-------hHHHHHHHHHHCCCCEEEeCC
Confidence 566789843322 234445555566889999988
No 215
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=20.04 E-value=2.3e+02 Score=24.30 Aligned_cols=48 Identities=10% Similarity=-0.095 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHHHHcCCCEEEEccCCC
Q 020182 18 LAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHD 75 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l~~~~iP~~~v~GNHD 75 (330)
...++++.+...++|.+|+.+..... .. .++.+...++|++.+.+..+
T Consensus 43 ~~~~~~~~~~~~~~d~ii~~~~~~~~---------~~-~~~~l~~~~ip~v~~~~~~~ 90 (264)
T cd01537 43 KQLSALENLIARGVDGIIIAPSDLTA---------PT-IVKLARKAGIPVVLVDRDIP 90 (264)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCcc---------hh-HHHHhhhcCCCEEEeccCCC
Confidence 34455555556678877776632111 11 23333456788877655544
No 216
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=20.03 E-value=2.8e+02 Score=25.38 Aligned_cols=48 Identities=8% Similarity=-0.038 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccCCCCcccHHHHHHHHHhHH-HHcCCCEEEEccC
Q 020182 18 LAARLLCWVLISQWIYEYHEGDNIFGSSTTDVAESMIQAFGPA-MELGLPWAAVLGN 73 (330)
Q Consensus 18 ~~~~~~~~i~~~~pD~vV~tGDli~~~~~~~~~~~~~~~l~~l-~~~~iP~~~v~GN 73 (330)
=+..+...|...+..+||+.+|. +.. ....++..+ ...+||++++++=
T Consensus 136 Gin~VtklIekkKAkLVIIA~DV-sP~-------t~kk~LP~LC~k~~VPY~iv~sK 184 (266)
T PTZ00365 136 GLNHVTDLVEYKKAKLVVIAHDV-DPI-------ELVCFLPALCRKKEVPYCIIKGK 184 (266)
T ss_pred hhHHHHHHHHhCCccEEEEeCCC-CHH-------HHHHHHHHHHhccCCCEEEECCH
Confidence 34567777888889999999994 221 122222122 2579999987653
Done!