RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 020186
(329 letters)
>gnl|CDD|178209 PLN02599, PLN02599, dihydroorotase.
Length = 364
Score = 633 bits (1634), Expect = 0.0
Identities = 250/317 (78%), Positives = 277/317 (87%), Gaps = 1/317 (0%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
S H+GRAIVMPNLKPP+TTTA A+AYRE I+KALP S+F PLMTLYLTD T+P+EIK
Sbjct: 48 SARHFGRAIVMPNLKPPVTTTARALAYRERIMKALPPGSSFEPLMTLYLTDNTTPEEIKA 107
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
A+ +GVVFAVKLYPAGATTNSQ GVTDL GKC+ VLEEM EQ MPLLVHGEVTDP VDIF
Sbjct: 108 AKASGVVFAVKLYPAGATTNSQAGVTDL-GKCLPVLEEMAEQGMPLLVHGEVTDPSVDIF 166
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DREKVFIDTIL PL+Q+LPQLK+VMEHITTMDAV+FVESC +G VAATVTPQHL+LNRNA
Sbjct: 167 DREKVFIDTILAPLVQKLPQLKIVMEHITTMDAVEFVESCGDGNVAATVTPQHLLLNRNA 226
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
LFQGGL+PHNYCLPVLKREIHR+A+V A TSGS+KFFLGTDSAPH + KE +CGCAGIY
Sbjct: 227 LFQGGLQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHPKRAKEASCGCAGIY 286
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
+APVALSLYAK FEE GALDKLEAFTSFNGPDFYGLPRNTS I L K WKVPEA+SF
Sbjct: 287 SAPVALSLYAKAFEEAGALDKLEAFTSFNGPDFYGLPRNTSTITLVKSAWKVPEAYSFGG 346
Query: 311 GDIIPMFAGNTLEWQPS 327
G ++PMFAG T+ W
Sbjct: 347 GTVVPMFAGETIPWSVV 363
>gnl|CDD|235474 PRK05451, PRK05451, dihydroorotase; Provisional.
Length = 345
Score = 593 bits (1531), Expect = 0.0
Identities = 204/312 (65%), Positives = 237/312 (75%), Gaps = 2/312 (0%)
Query: 14 HYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARK 73
+GRAIVMPNL PP+TT A A+AYRE IL ALPA SNF PLMTLYLTD T PDE++ A+
Sbjct: 33 QFGRAIVMPNLVPPVTTVAQALAYRERILAALPAGSNFEPLMTLYLTDNTDPDELERAKA 92
Query: 74 TGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDRE 133
+GVV A KLYPAGATTNS GVTD+ K VLE M + MPLLVHGEVTDP +DIFDRE
Sbjct: 93 SGVVTAAKLYPAGATTNSDAGVTDI-EKIYPVLEAMQKLGMPLLVHGEVTDPDIDIFDRE 151
Query: 134 KVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQ 193
VFID +L+PL +R P+LK+V EHITT DAV +V + +AAT+TP HL++NRN +
Sbjct: 152 AVFIDRVLEPLRRRFPKLKIVFEHITTKDAVDYVREAND-NLAATITPHHLLINRNDMLV 210
Query: 194 GGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAP 253
GG+RPH YCLP+LKRE HRQA+ A TSG+ KFFLGTDSAPH R KE ACGCAGI++AP
Sbjct: 211 GGIRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKESACGCAGIFSAP 270
Query: 254 VALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSFGDI 313
AL LYA+VFEE GALDKLEAF S NGPDFYGLPRNT I L + PW VPE+ F +
Sbjct: 271 AALELYAEVFEEAGALDKLEAFASLNGPDFYGLPRNTDTITLVREPWTVPESIPFGDETV 330
Query: 314 IPMFAGNTLEWQ 325
+P AG TL W
Sbjct: 331 VPFRAGETLRWS 342
>gnl|CDD|223495 COG0418, PyrC, Dihydroorotase [Nucleotide transport and
metabolism].
Length = 344
Score = 507 bits (1307), Expect = 0.0
Identities = 196/312 (62%), Positives = 236/312 (75%), Gaps = 2/312 (0%)
Query: 14 HYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARK 73
+GRAI+MPNL PP+TT A A+AYRE ILKA+PA FTPLMTLYLTD+T+P+E++ A+
Sbjct: 33 GFGRAIIMPNLVPPVTTVADALAYRERILKAVPAGHRFTPLMTLYLTDSTTPEELEEAKA 92
Query: 74 TGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDRE 133
GV+ AVKLYPAGATTNS GVTD+ K VLE M + MPLLVHGEVTD VDIFDRE
Sbjct: 93 KGVIRAVKLYPAGATTNSDSGVTDIE-KIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDRE 151
Query: 134 KVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQ 193
FI+++L+PL QR P+LK+V+EHITT DAV++V+ +AAT+TP HL+LNRN +
Sbjct: 152 AAFIESVLEPLRQRFPKLKIVLEHITTKDAVEYVKDA-NNNLAATITPHHLLLNRNDMLV 210
Query: 194 GGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAP 253
GG+RPH +CLP+LKRE HR+A+ A TSG KFFLGTDSAPH R RKE ACGCAGI++AP
Sbjct: 211 GGIRPHLFCLPILKRETHREALREAATSGHPKFFLGTDSAPHARSRKESACGCAGIFSAP 270
Query: 254 VALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSFGDI 313
AL LYA+VFEE ALD LEAF S NGP FYGLPRN I L K W+VPE+ F +
Sbjct: 271 FALPLYAEVFEEENALDNLEAFASDNGPKFYGLPRNDKTITLVKEEWQVPESIPFGDDIV 330
Query: 314 IPMFAGNTLEWQ 325
+P AG TL W
Sbjct: 331 VPFRAGETLSWS 342
>gnl|CDD|238619 cd01294, DHOase, Dihydroorotase (DHOase) catalyzes the reversible
interconversion of carbamoyl aspartate to
dihydroorotate, a key reaction in the pyrimidine
biosynthesis. In contrast to the large polyfunctional
CAD proteins of higher organisms, this group of DHOases
is monofunctional and mainly dimeric.
Length = 335
Score = 505 bits (1302), Expect = 0.0
Identities = 189/314 (60%), Positives = 226/314 (71%), Gaps = 4/314 (1%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
+ + RAIVMPNLKPP+TTTA A+AYRE IL A P NFTPLMTLYLT+ T+P+E++
Sbjct: 26 TARGFSRAIVMPNLKPPVTTTADALAYRERILAADP-GPNFTPLMTLYLTENTTPEELRE 84
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
A+K G + VKLYPAGATTNSQ GVTD K VLE M + MPLLVHGEV D +D+
Sbjct: 85 AKKKGGIRGVKLYPAGATTNSQGGVTD-LEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVL 143
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DRE FI +L+PL QR P+LK+V+EHITT DAV++V+SC E VAAT+TP HL+L R+
Sbjct: 144 DREAKFI-PVLEPLAQRFPKLKIVLEHITTADAVEYVKSCNEN-VAATITPHHLLLTRDD 201
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
L GGL PH YC PV KR R+A+ A TSG KFFLG+DSAPH + KE +CGCAGI+
Sbjct: 202 LLGGGLNPHLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKESSCGCAGIF 261
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
+AP+AL A+VFEE ALDKLEAF S NGP+FYGLP N I L K PWKVPE F
Sbjct: 262 SAPIALPYLAEVFEEHNALDKLEAFASDNGPNFYGLPPNKKTITLVKEPWKVPEKIPFGN 321
Query: 311 GDIIPMFAGNTLEW 324
++P AG TL W
Sbjct: 322 NGVVPFRAGETLRW 335
>gnl|CDD|129935 TIGR00856, pyrC_dimer, dihydroorotase, homodimeric type. This
homodimeric form of dihydroorotase is less common in
microbial genomes than a related dihydroorotase that
appears in a complex with aspartyltranscarbamoylase or
as a homologous domain in multifunctional proteins of
pyrimidine biosynthesis in higher eukaryotes [Purines,
pyrimidines, nucleosides, and nucleotides, Pyrimidine
ribonucleotide biosynthesis].
Length = 341
Score = 422 bits (1086), Expect = e-149
Identities = 186/321 (57%), Positives = 233/321 (72%), Gaps = 3/321 (0%)
Query: 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTS 64
+LP + + RAIVMPNL PP+TT AAVAYRE IL A+PA +FTPLMTLYLTD+ +
Sbjct: 22 AVLPY-TSEIFSRAIVMPNLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTLYLTDSLT 80
Query: 65 PDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTD 124
P+E++ A+ GVV AVKLYPAGATTNS GVTD + VLE M + +PLL+HGEVT
Sbjct: 81 PEELERAKNEGVVRAVKLYPAGATTNSSHGVTD-IDAIMPVLEAMEKIGLPLLLHGEVTH 139
Query: 125 PIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHL 184
+DIFDRE FI+++L+PL QR P LKVV+EHITT DA+ +VE +AAT+TPQHL
Sbjct: 140 GDIDIFDREARFIESVLEPLRQRFPALKVVLEHITTKDAIDYVEDGNNR-LAATITPQHL 198
Query: 185 VLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECAC 244
+ RN L GG+ PH YCLP+LKR IH+QA++ SG KFFLGTDSAPH R RKE +C
Sbjct: 199 MFTRNDLLGGGVNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHARHRKESSC 258
Query: 245 GCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPE 304
GCAG ++AP AL YA+VFEEM AL+ LEAF S NGP FYGLP N++KI+L K ++PE
Sbjct: 259 GCAGCFSAPTALPSYAEVFEEMNALENLEAFCSDNGPQFYGLPVNSTKIELVKKEQQIPE 318
Query: 305 AFSFSFGDIIPMFAGNTLEWQ 325
+ + + ++P AG TL W
Sbjct: 319 SIALTDDTLVPFRAGETLSWS 339
>gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This group contains the archeal
members of the DHOase family.
Length = 361
Score = 68.9 bits (169), Expect = 4e-13
Identities = 67/283 (23%), Positives = 112/283 (39%), Gaps = 33/283 (11%)
Query: 21 MPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAV 80
MPN KPP TTTA A+ + + A + ++ LY T S D ++ K
Sbjct: 44 MPNTKPP-TTTAEALYEKLRLAAAK-SVVDY----GLYFGVTGSED-LEELDKAPPAG-Y 95
Query: 81 KLYPAGATTNSQDGVTDLFG--------KCVHV-LEEMVEQNMPLLVHGEVTDPIVDIFD 131
K++ +T + D L H E+ + +N L I D
Sbjct: 96 KIFMGDSTGDLLDDEETLERIFAEGSVLVTFHAEDEDRLRENRKELKG---ESAHPRIRD 152
Query: 132 REKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNAL 191
E + T + R ++ + H++T + +K ++ K G VTP HL L+
Sbjct: 153 AEAAAVATARALKLARRHGARLHICHVSTPEELKLIKKAKPGV-TVEVTPHHLFLDVEDY 211
Query: 192 FQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPH-----ERGRKECACGC 246
L P L+ R+A++ A+ G R + +D APH +G G
Sbjct: 212 --DRLGTLGKVNPPLRSREDRKALLQALADG-RIDVIASDHAPHTLEEKRKGYPAAPSGI 268
Query: 247 AGIYNA-PVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPR 288
G+ A P+ L+L V + + +L ++ TS N +G+
Sbjct: 269 PGVETALPLMLTL---VNKGILSLSRVVRLTSHNPARIFGIKN 308
>gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases
[Nucleotide transport and metabolism].
Length = 430
Score = 68.9 bits (169), Expect = 6e-13
Identities = 74/300 (24%), Positives = 111/300 (37%), Gaps = 51/300 (17%)
Query: 19 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 78
+ MPN KPPI T A E ++ L T + GV
Sbjct: 89 VDMPNTKPPIDTAEALEDKLERAKGKSVV--DYAFYGGL----TKGNLGKLELTERGVEA 142
Query: 79 AVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFID 138
K + +T D V + LE E +LVH E D I E V +
Sbjct: 143 GFKGFMDDSTGALDDDVLEE------ALEYAAELGALILVHAEDDDLI-----AEGVMNE 191
Query: 139 TILQP--------------LIQRLPQL------KVVMEHITTMDAVKFVESCKEGFVAAT 178
+ P I R +L +V + HI+T ++V+ + + K + T
Sbjct: 192 GLRAPELGLAGRPPIAEASAIARDLELARATGARVHICHISTKESVELIRAAKAEGIRVT 251
Query: 179 --VTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPH- 235
VTP HL+L+ + L P L+ E R+A+ A+ G + +D APH
Sbjct: 252 AEVTPHHLLLDEEDIE--DLGTLAKVNPPLRDEEDREALWEALKDGV-IDVIASDHAPHT 308
Query: 236 --ERGRK--ECACGCAGIYNA-PVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNT 290
E+ E G G+ A P+ L+L K +L++L S N +GLP
Sbjct: 309 LEEKRLPFEEAPSGIPGLETALPLLLTLVKK---GRLSLERLVELLSTNPARIFGLPPKG 365
>gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family. This family of
enzymes are a a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 307
Score = 61.5 bits (149), Expect = 8e-11
Identities = 37/235 (15%), Positives = 74/235 (31%), Gaps = 30/235 (12%)
Query: 110 VEQNMPLLV------HGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDA 163
+E N+ LL+ E+ + ++D E +++ +I+ + ++ + A
Sbjct: 69 LEPNVELLLKGSVGGRAELGEVVIDGAGEEAKAGADLIK-VIEDGGKTAKAIDGVLPALA 127
Query: 164 VKFVESCKEGFVAATVTPQHLVLNR-----------------NALFQGGLRPHNYCLPVL 206
+ + V GG+ +CL +
Sbjct: 128 PHDPPTVSHEGLKNEVELAEETEEAEKLGLLVHIHAAEASGEVNAILGGVDLLAHCLHLD 187
Query: 207 KREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE-CACGCAGIYNAPVALSLYAKVFEE 265
I ++ SG L +S H GR + GI + A++ ++
Sbjct: 188 DEAI---ELLKEAGSGIAHCPLSNESILHRGGRFSLMSGDAQGIGELGSGGARLARLADK 244
Query: 266 MGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVP-EAFSFSFGDIIPMFAG 319
G + NG DFY P S I+ ++ P +A + + G
Sbjct: 245 GGVVGLGTDGAGLNGKDFYLDPDGLSPIEALRMATINPAKALGLD-DRVGSIEVG 298
>gnl|CDD|238642 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This subgroup also contains
proteins that lack the active site, like unc-33, a
C.elegans protein involved in axon growth.
Length = 374
Score = 50.3 bits (121), Expect = 5e-07
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 152 KVVMEHITTMDAVKFVESCKEGF--VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKRE 209
+V +H++T +++ + K V A VTP HL+L+ AL + P L+ E
Sbjct: 187 RVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALE--SYDTNAKVNPPLRSE 244
Query: 210 IHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCA--GIYNAPVALSLYAKVF--EE 265
R+A++ A+ G+ + +D APH K+ A GI AL L +
Sbjct: 245 EDREALIEALKDGTID-AIASDHAPHTDEEKDLPFAEAPPGIIGLETALPLLWTLLVKGG 303
Query: 266 MGALDKLEAFTSFNGPDFYGLPRNT 290
+ L L S N GLP
Sbjct: 304 LLTLPDLIRALSTNPAKILGLPPGR 328
>gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex
type. In contrast to the homodimeric type of
dihydroorotase found in E. coli, this class tends to
appear in a large, multifunctional complex with
aspartate transcarbamoylase. Homologous domains appear
in multifunctional proteins of higher eukaryotes. In
some species, including Pseudomonas putida and P.
aeruginosa, this protein is inactive but is required as
a non-catalytic subunit of aspartate transcarbamoylase
(ATCase). In these species, a second, active
dihydroorotase is also present. The seed for this model
does not include any example of the dihydroorotase
domain of eukaryotic multidomain pyrimidine synthesis
proteins. All proteins described by This model should
represent active and inactive dihydroorotase per se and
functionally equivalent domains of multifunctional
proteins from higher eukaryotes, but exclude related
proteins such as allantoinase [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 411
Score = 50.1 bits (120), Expect = 7e-07
Identities = 64/270 (23%), Positives = 98/270 (36%), Gaps = 45/270 (16%)
Query: 15 YGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKT 74
+ MPN KPPI T + ++ LK + + + Y T +L
Sbjct: 71 FTTVADMPNTKPPI-DTPETLEWKLQRLKKV-SLVDVHL----YGGVTQGNQGKELTE-- 122
Query: 75 GVVFAVKLYPAGATTN--SQDGVTDL-FGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFD 131
A +L AGA + DG LE +P+ +H E DP D+
Sbjct: 123 ----AYELKEAGAVGRMFTDDGSEVQDILSMRRALEYAAIAGVPIALHAE--DP--DLIY 174
Query: 132 REKVFIDTILQPL-------------IQRLPQL------KVVMEHITTMDAVKFVESCKE 172
+ L + RL +L V + HI+T ++++ + K
Sbjct: 175 GGVMHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIVKAKS 234
Query: 173 GFVAAT--VTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGT 230
+ T VTP HL+L+ + L + P L+ + R A++ + G T
Sbjct: 235 QGIKITAEVTPHHLLLSEEDV--ARLDGNGKVNPPLREKEDRLALIEGLKDGIIDII-AT 291
Query: 231 DSAPH--ERGRKECACGCAGIYNAPVALSL 258
D APH E KE A GI AL L
Sbjct: 292 DHAPHTLEEKTKEFAAAPPGIPGLETALPL 321
>gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional.
Length = 443
Score = 48.5 bits (116), Expect = 3e-06
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 21/141 (14%)
Query: 157 HITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVV 216
HI+T + V ++ + + VTP HL L+R L P L+ E R+A+
Sbjct: 234 HISTPEGV---DAARREGITCEVTPHHLFLSRRDW--ERLGTFGKMNPPLRSEKRREALW 288
Query: 217 SAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAP---------VALSLYAKVFEEMG 267
+ G+ + +D APH R K+ A I++AP + L L A V +
Sbjct: 289 ERLNDGTID-VVASDHAPHTREEKD-----ADIWDAPSGVPGVETMLPLLLAA-VRKNRL 341
Query: 268 ALDKLEAFTSFNGPDFYGLPR 288
L+++ T+ N +GL
Sbjct: 342 PLERVRDVTAANPARIFGLDG 362
>gnl|CDD|238627 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including
hydantoinase, dihydropyrimidinase, allantoinase, and
dihydroorotase, are involved in the metabolism of
pyrimidines and purines, sharing the property of
hydrolyzing the cyclic amide bond of each substrate to
the corresponding N-carbamyl amino acids. Allantoinases
catalyze the degradation of purines, while
dihydropyrimidinases and hydantoinases, a microbial
counterpart of dihydropyrimidinase, are involved in
pyrimidine degradation. Dihydroorotase participates in
the de novo synthesis of pyrimidines.
Length = 337
Score = 45.5 bits (108), Expect = 2e-05
Identities = 49/231 (21%), Positives = 83/231 (35%), Gaps = 44/231 (19%)
Query: 19 IVMPNLKPPITTTAAAVAYRESILKALPAS-SNFTPLMTLYLTDTTSPDEIKLARKTGVV 77
I MPN PP A I A +S +F+ + DE+K G+
Sbjct: 42 IDMPNTGPPPIDL---PAIELKIKLAEESSYVDFS--FHAGIGPGDVTDELKKLFDAGIN 96
Query: 78 FAVKLY-PAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVF 136
++K++ L E+ + P++VH E
Sbjct: 97 -SLKVFMNYYFGELFDVDDGTLMRT----FLEIASRGGPVMVHAE--------------- 136
Query: 137 IDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAAT--VTPQHLVLNRNALFQG 194
L + V + H+++ +A++ ++ K V T V P HL L+ + L
Sbjct: 137 ---RAAQLAE-EAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRLN 192
Query: 195 G----LRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE 241
G + P P+ +E R+A+ V +G +D APH + KE
Sbjct: 193 GAWGKVNP-----PLRSKE-DREALWEGVKNGKIDTI-ASDHAPHSKEEKE 236
>gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated.
Length = 423
Score = 45.6 bits (109), Expect = 2e-05
Identities = 69/292 (23%), Positives = 101/292 (34%), Gaps = 77/292 (26%)
Query: 20 VMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFA 79
MPN KP I T V E +L A++ G+V
Sbjct: 90 AMPNTKPVIDT--PEVV--EYVLD--------------------------RAKEAGLV-- 117
Query: 80 VKLYPAGATTNSQDG--VTDL----------F---GKCVH---VLEEMVEQ----NMPLL 117
+ P GA T G +T+ F G V ++ +E ++ +
Sbjct: 118 -DVLPVGAITKGLAGEELTEFGALKEAGVVAFSDDGIPVQDARLMRRALEYAKALDLLIA 176
Query: 118 VHGEVTDPIVDIFDREKVFIDTI-LQP--------------LIQRLPQLKVVMEHITTMD 162
H E E + L L+ +V + H++T
Sbjct: 177 QHCEDPSLTEGGVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHICHVSTAG 236
Query: 163 AVKFVESCKE-GF-VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVT 220
+V+ + K G V A VTP HL+L L P+ P L+ E R+A++ +
Sbjct: 237 SVELIRWAKALGIKVTAEVTPHHLLLTDEDLL--TYDPNYKVNPPLRTEEDREALIEGLK 294
Query: 221 SGSRKFFLGTDSAPHERGRKECACGCA--GIYNAPVALSLYAKVFEEMGALD 270
G+ + TD APH R KEC A GI ALSL + G LD
Sbjct: 295 DGTIDA-IATDHAPHAREEKECEFEAAPFGITGLETALSLLYTTLVKTGLLD 345
>gnl|CDD|236055 PRK07575, PRK07575, dihydroorotase; Provisional.
Length = 438
Score = 43.1 bits (102), Expect = 1e-04
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 157 HITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQ-GGLRPHNYCLPVLKREIHRQAV 215
H++T + + K +V A VTPQHL+LN +A + G L N P L+ +A+
Sbjct: 232 HLSTAIEAELLRQDKPSWVTAEVTPQHLLLNTDAYERIGTLAQMN---PPLRSPEDNEAL 288
Query: 216 VSAVTSGSRKFFLGTDSAPH 235
A+ G F+ TD APH
Sbjct: 289 WQALRDGVID-FIATDHAPH 307
>gnl|CDD|235265 PRK04250, PRK04250, dihydroorotase; Provisional.
Length = 398
Score = 40.5 bits (95), Expect = 8e-04
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 157 HITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVV 216
HI+T D +K + +V+ VTP HL L R + L P L+ E R+A+
Sbjct: 204 HISTKDGLKLILKSNLPWVSFEVTPHHLFLTRKDYERNPLLKVY---PPLRSEEDRKALW 260
Query: 217 SAVTSGSRKFFLGTDSAPHERGRKECACGCAGI--YNAPVALSLYA 260
S+ + +D APH KE G AGI V L L A
Sbjct: 261 ENF---SKIPIIASDHAPHTLEDKE--AGAAGIPGLETEVPLLLDA 301
>gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of
metallo-dependent hydrolases (also called amidohydrolase
superfamily) is a large group of proteins that show
conservation in their 3-dimensional fold (TIM barrel)
and in details of their active site. The vast majority
of the members have a conserved metal binding site,
involving four histidines and one aspartic acid residue.
In the common reaction mechanism, the metal ion (or
ions) deprotonate a water molecule for a nucleophilic
attack on the substrate. The family includes urease
alpha, adenosine deaminase, phosphotriesterase
dihydroorotases, allantoinases, hydantoinases, AMP-,
adenine and cytosine deaminases, imidazolonepropionase,
aryldialkylphosphatase, chlorohydrolases,
formylmethanofuran dehydrogenases and others.
Length = 275
Score = 38.1 bits (88), Expect = 0.004
Identities = 50/273 (18%), Positives = 86/273 (31%), Gaps = 62/273 (22%)
Query: 18 AIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPD----------E 67
+ M + PP TT AA A E A AS+ ++ L + +
Sbjct: 52 VVDMGSTPPPTTTKAAIEAVAE----AARASAGIRVVLGLGIPGVPAAVDEDAEALLLEL 107
Query: 68 IKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV 127
++ + G V +KL T D VLEE + +P+++H
Sbjct: 108 LRRGLELGAV-GLKLAGPYTATGLSDESLR------RVLEEARKLGLPVVIHAGELPDPT 160
Query: 128 DIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLN 187
+ + + +VV+ H++ +D + +E KE V+ V P L
Sbjct: 161 RALED---LVALLRLG-------GRVVIGHVSHLDP-ELLELLKEAGVSLEVCPLSNYLL 209
Query: 188 RNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCA 247
+A+ + G + LGTD PH
Sbjct: 210 GR------------------DGEGAEALRRLLELG-IRVTLGTDGPPH-----------P 239
Query: 248 GIYNAPVALSLYAKVFEEMGALDKLEAFTSFNG 280
+ L L KV +L++ + N
Sbjct: 240 LGTDLLALLRLLLKVLRLGLSLEEALRLATINP 272
>gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional.
Length = 409
Score = 37.1 bits (86), Expect = 0.011
Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 42/241 (17%)
Query: 21 MPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAV 80
MPN PI A + A A +F+ LY +T + I R G+
Sbjct: 84 MPNNNIPIKDYNAFSDKLGRV--APKAYVDFS----LYSMETGNNALILDERSIGL---- 133
Query: 81 KLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTI 140
K+Y G TTN+ TD+ G + + E N+P+ H E+++ + K D
Sbjct: 134 KVY-MGGTTNTNG--TDIEGGEIKKINEA---NIPVFFHAELSECLRKHQFESKNLRDHD 187
Query: 141 L-QPL---------IQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
L +P+ ++ L ++ H++++D + G VTP HL+LN +
Sbjct: 188 LARPIECEIKAVKYVKNLDLKTKIIAHVSSIDVI--------GRFLREVTPHHLLLNDDM 239
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKF-FLGTDSAPH-ERGRKECACGCAG 248
L + P L+ ++ ++ SG +F L +D APH E ++E +G
Sbjct: 240 ----PLGSYGKVNPPLRDRWTQERLLEEYISG--RFDILSSDHAPHTEEDKQEFEYAKSG 293
Query: 249 I 249
I
Sbjct: 294 I 294
>gnl|CDD|218322 pfam04909, Amidohydro_2, Amidohydrolase. These proteins are
amidohydrolases that are related to pfam01979.
Length = 272
Score = 35.3 bits (81), Expect = 0.030
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 66 DEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDP 125
+ + + G V+L P + G + E + E +P+ +H D
Sbjct: 89 ELERRLAELGFR-GVRLNP-----HPGGGPLLDPRLDDPIFEALAELGLPVDLHTGFGDA 142
Query: 126 IVDIFDREKVFIDTILQPLIQRLPQLKVVMEH 157
D+ +L L +R P LK+V++H
Sbjct: 143 GEDLD----AAQPLLLSGLARRFPDLKIVLDH 170
>gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated.
Length = 444
Score = 31.0 bits (71), Expect = 0.88
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 157 HITTMDAVKFVESCKEGFVAAT-VTPQHLVLNRNALFQ--GGLRPHNYCLPVLKREIHRQ 213
H++T + + F+ K+ VA VTP HL L ++ G L N P ++ HR
Sbjct: 234 HVSTAEEIDFLADHKD--VATVEVTPHHLTLAAPECYERLGTLAQMN---PPIRDARHRD 288
Query: 214 AVVSAVTSGSRKFFLGTDSAPHERGRKE 241
+ V G LG+D APH K
Sbjct: 289 GLWRGVRQGVVDV-LGSDHAPHTLEEKA 315
>gnl|CDD|188643 cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate
aldolases (FSA) found in bacteria and archaea.
Transaldolase-like fructose-6-phosphate aldolases (FSA)
found in bacteria and archaea, which are member of the
MipB/TalC subfamily of class I aldolases. FSA catalyze
an aldol cleavage of fructose 6-phosphate and do not
utilize fructose, fructose 1-phosphate, fructose
1,6-phosphate, or dihydroxyacetone phosphate. The
enzymes belong to the transaldolase family that serves
in transfer reactions in the pentose phosphate cycle,
and are more distantly related to fructose
1,6-bisphosphate aldolase.
Length = 211
Score = 29.5 bits (67), Expect = 2.0
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 17/71 (23%)
Query: 57 LYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTN----SQDGVTDLFGKCVHVLEEMVEQ 112
++L DT +EIK A +TG++ G TTN ++ G D VL+E+ E
Sbjct: 2 IFL-DTADLEEIKKASETGLL-------DGVTTNPSLIAKSGRIDFEA----VLKEICEI 49
Query: 113 NMPLLVHGEVT 123
+ V +V
Sbjct: 50 -IDGPVSAQVV 59
>gnl|CDD|182501 PRK10503, PRK10503, multidrug efflux system subunit MdtB;
Provisional.
Length = 1040
Score = 29.7 bits (67), Expect = 2.9
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 254 VALSLYAKVFEEMGAL-----DKLEAFT-SFNGPDFYGLPRNTSKIKLTKIPWKVPEAFS 307
V LS A + + G L D+ + T SFN PD Y L I T+ +P
Sbjct: 790 VPLSSIATIEQRFGPLSINHLDQFPSTTISFNVPDGYSLGDAVQAIMDTEKTLNLPA--- 846
Query: 308 FSFGDIIPMFAGNTLEWQPSL 328
DI F G+TL +Q +L
Sbjct: 847 ----DITTQFQGSTLAFQSAL 863
>gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated.
Length = 429
Score = 28.8 bits (65), Expect = 4.0
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 175 VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSG 222
V A V+ HL LN N + G R P L+ E R A+V AV SG
Sbjct: 258 VTAGVSINHLSLNENDI--GEYRTFFKLSPPLRTEDDRVAMVEAVASG 303
>gnl|CDD|200272 TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein
UrtB. Members of this protein family are ABC
transporter permease proteins associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 291
Score = 28.0 bits (63), Expect = 6.8
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 244 CGCAGIYNAPVALSLYAKVFEEMGALDKLEAF 275
G AG+ A VAL+L V +G L +++F
Sbjct: 200 SGIAGV--AGVALTLIGNVGPTLGQLYIVDSF 229
>gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 639
Score = 28.1 bits (62), Expect = 7.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 10 CSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALP 46
C++ + A+ + NL+ IT TA A+ +R + K +P
Sbjct: 272 CTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVP 308
>gnl|CDD|220843 pfam10673, DUF2487, Protein of unknown function (DUF2487). This is
a bacterial family of uncharacterized proteins.
Length = 143
Score = 27.3 bits (61), Expect = 7.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 127 VDIFDREKVFIDTILQPLI 145
VD + +EK +IDT + PL+
Sbjct: 1 VDTYLQEKDYIDTAVIPLL 19
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,971,427
Number of extensions: 1626964
Number of successful extensions: 1365
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1346
Number of HSP's successfully gapped: 40
Length of query: 329
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 232
Effective length of database: 6,635,264
Effective search space: 1539381248
Effective search space used: 1539381248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)