RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 020186
(329 letters)
>d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId:
562]}
Length = 343
Score = 222 bits (566), Expect = 3e-71
Identities = 177/312 (56%), Positives = 215/312 (68%), Gaps = 2/312 (0%)
Query: 14 HYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARK 73
YGRAIVMPNL PP+TT AAVAYR+ IL A+PA +FTPLMT YLTD+ P+E++
Sbjct: 32 IYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCYLTDSLDPNELERGFN 91
Query: 74 TGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDRE 133
GV A KLYPA ATTNS GVT + VLE M + MPLLVHGEVT +DIFDRE
Sbjct: 92 EGVFTAAKLYPANATTNSSHGVTS-VDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDRE 150
Query: 134 KVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQ 193
FI+++++PL QRL LKVV EHITT DA +V E +AAT+TPQHL+ NRN +
Sbjct: 151 ARFIESVMEPLRQRLTALKVVFEHITTKDAADYVRDGNE-RLAATITPQHLMFNRNHMLV 209
Query: 194 GGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAP 253
GG+RPH YCLP+LKR IH+QA+ V SG + FLGTDSAPH R RKE +CGCAG +NAP
Sbjct: 210 GGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAP 269
Query: 254 VALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSFGDI 313
AL YA VFEEM AL EAF S NGP FYGLP N + I+L + +V E+ + + +
Sbjct: 270 TALGSYATVFEEMNALQHFEAFCSVNGPQFYGLPVNDTFIELVREEQQVAESIALTDDTL 329
Query: 314 IPMFAGNTLEWQ 325
+P AG T+ W
Sbjct: 330 VPFLAGETVRWS 341
>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex
aeolicus [TaxId: 63363]}
Length = 310
Score = 85.8 bits (211), Expect = 9e-20
Identities = 60/286 (20%), Positives = 94/286 (32%), Gaps = 20/286 (6%)
Query: 15 YGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKT 74
+ + MPN PPI T IL+ + L T +T EI
Sbjct: 32 FTTIVCMPNTNPPIDNTTVV----NYILQKSKSVGLCRVLPTGTITKGRKGKEIADFYSL 87
Query: 75 GVVFAVKLYPAGAT-TNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF--- 130
V G+ +S L + M L +G + + V
Sbjct: 88 KEAGCVAFTDDGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVINEGEVSALLGL 147
Query: 131 ---DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLN 187
E I ++ + V ++H++T +++ +E KE V T L
Sbjct: 148 SSRAPEAEEIQIARDGILAQRTGGHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLL 207
Query: 188 RNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE----CA 243
+ P L+++ R A++ V G TD APH+ KE
Sbjct: 208 FTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGI-IDCFATDHAPHQTFEKELVEFAM 266
Query: 244 CGCAGIYNA-PVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPR 288
G G+ A P AL LY K + +L KL + N G+
Sbjct: 267 PGIIGLQTALPSALELYRK---GIISLKKLIEMFTINPARIIGVDL 309
>d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2
{Dictyostelium discoideum [TaxId: 44689]}
Length = 334
Score = 41.1 bits (95), Expect = 9e-05
Identities = 33/294 (11%), Positives = 88/294 (29%), Gaps = 25/294 (8%)
Query: 19 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 78
I + A +++ + + + +T + + EI + + F
Sbjct: 39 IDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSEQVSREMEILVKERGVNSF 98
Query: 79 AVKLYPAGATTNSQDGVTDLFGKCVHV---------LEEMVEQNMPLLVHGEVTDPIVDI 129
+ + + + +F +C + +MV + ++ +T P
Sbjct: 99 KCFMAYKNSFMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHE 158
Query: 130 FDREKVFIDTILQP--LIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLV 185
R + +I V + H+ ++ A + ++ V L
Sbjct: 159 LSRPEALEAEATNRAIVIADSVCTPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLG 218
Query: 186 LNRNALFQGGLRPHN--YCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE-- 241
++ + ++ R P ++ + + V+ + +GTD+ +K
Sbjct: 219 VDGSHMWNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMG 278
Query: 242 ------CACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGL-PR 288
G G+ + +++ V + TS + + PR
Sbjct: 279 KDDFTKIPNGVNGVEDR-MSIVWENGVNTGKLTWCQFVRATSSERARIFNIYPR 331
>d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens
[TaxId: 43663]}
Length = 325
Score = 38.5 bits (88), Expect = 7e-04
Identities = 44/297 (14%), Positives = 87/297 (29%), Gaps = 36/297 (12%)
Query: 19 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 78
I MP PP TT A + ++ + EI+ G V
Sbjct: 37 IEMPITFPPTTTLDAFLEKKKQA-----GQRLKVDFALYGGGVPGNLPEIRKMHDAGAVG 91
Query: 79 AVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFID 138
A + D V+D G+ + +E+ ++VH E I + + K
Sbjct: 92 FKS-MMAASVPGMFDAVSD--GELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGG 148
Query: 139 TILQPLIQRLPQ------------------LKVVMEHITTMDAVKFVESCKEGFVAATVT 180
+ P ++++ H++ D V+ + +
Sbjct: 149 KDMAAYEASQPVFQENEAIQRALLLQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHCE 208
Query: 181 PQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRK 240
LN + P+ P ++ + + +G G+D H K
Sbjct: 209 SGPQYLNITTDDAERIGPYMKVAPPVRSAEMNIRLWEQLENGLIDTL-GSDHGGHPVEDK 267
Query: 241 E--------CACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRN 289
E G G+ + + + L V + +L++L +G+
Sbjct: 268 EPGWKDVWKAGNGALGLETS-LPMMLTNGVNKGRLSLERLVEVMCEKPAKLFGIYPQ 323
>d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId:
275]}
Length = 335
Score = 38.0 bits (87), Expect = 0.001
Identities = 39/297 (13%), Positives = 78/297 (26%), Gaps = 23/297 (7%)
Query: 19 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 78
I M ++ F ++ + T +A
Sbjct: 37 IEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFK 96
Query: 79 AVKLYPAGATTNSQDGVTDLF-----GKCVHVLE---EMVEQNMPLLVHGEVTDPIVDIF 130
Y + + L G V E+V + L+ T P
Sbjct: 97 IFLSYKNFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEP 156
Query: 131 DREKVFIDTILQPLI--QRLPQLKVVMEHITTMDAVKFVESC--KEGFVAATVTPQHLVL 186
R + + H++ A+ + + + H +L
Sbjct: 157 SRPEAVEAEGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLL 216
Query: 187 NRNALFQGGLRPHNYCLPV-LKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRK----- 240
++ +GG+ Y + L+ + +++ + A+ G +GTD P + +K
Sbjct: 217 DKTYAERGGVEAMKYIMSPPLRDKRNQKVLWDALAQG-FIDTVGTDHCPFDTEQKLLGKE 275
Query: 241 ---ECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIK 294
G I + V L V + + S +GL I
Sbjct: 276 AFTAIPNGIPAIEDR-VNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIA 331
>d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId:
301298]}
Length = 332
Score = 36.9 bits (84), Expect = 0.003
Identities = 44/296 (14%), Positives = 92/296 (31%), Gaps = 30/296 (10%)
Query: 19 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 78
+ K + +A + E A ++ + + + +E++ + +
Sbjct: 38 VDFCLTKKGESLKSAIATWHEKARGK--AVIDYGFHLMIAEANDQVLEELESVISSEGIT 95
Query: 79 AVKLYPAGATTNSQDGVTDL--------FGKCVHVLEE---MVEQNMPLLVHGEVTDPIV 127
++K++ A D T G V V E +++ + TDPI
Sbjct: 96 SLKVFMAYKNVFQADDETLFKTLVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDPIY 155
Query: 128 DIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEG-----FVAATVTPQ 182
+ R + L L ++ + V+ E V PQ
Sbjct: 156 HAYTRPP-EAEGEATGRAIALTALAGSQLYVVHVSCASAVQRIAEAREKGWNVYGETCPQ 214
Query: 183 HLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE- 241
+L L+ + + Q Y RE Q V+ + +G+D P ++
Sbjct: 215 YLALDVSIMDQPDFEGAKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKE 274
Query: 242 --------CACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGL-PR 288
G I + + + V + +L++ +S +G+ PR
Sbjct: 275 LGRGDFTKIPNGGPLIEDR-LTILYSEGVRQGRISLNQFVDISSTKAAKLFGMFPR 329
>d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 334
Score = 30.7 bits (68), Expect = 0.23
Identities = 36/295 (12%), Positives = 74/295 (25%), Gaps = 27/295 (9%)
Query: 19 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 78
I +P + + + E+ + +T + D + L + GV
Sbjct: 39 IDHVVPEPGSSLLTSFEKWHEAADTKSCCDYSLHVDITSW-YDGVREELEVLVQDKGVNS 97
Query: 79 AVKLYPAGATTNSQDGVTDLFGKC---------VH-VLEEMVEQNMPLLVHGEVTDPI-- 126
D VH +++ Q ++ +T P
Sbjct: 98 FQVYMAYKDLYQMSDSQLYEAFTFLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGH 157
Query: 127 VDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGF--VAATVTPQHL 184
E I V + + + A + ++ V L
Sbjct: 158 ALSRPEELEAEAVFRAIAIAGRINCPVYITKVMSKSAADIIALARKKGPLVFGEPIAASL 217
Query: 185 VLNRNALFQGGLR--PHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE- 241
+ + P L + ++++ + G+ P+ +K
Sbjct: 218 GTDGTHYWSKNWAKAAAFVTSPPLSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAV 277
Query: 242 -------CACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGL-PR 288
G GI + + V ++ A TS N + L PR
Sbjct: 278 GKDNFTLIPEGVNGIEER-MTVVWDKAVATGKMDENQFVAVTSTNAAKIFNLYPR 331
>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii
[TaxId: 329]}
Length = 330
Score = 29.9 bits (66), Expect = 0.40
Identities = 43/295 (14%), Positives = 89/295 (30%), Gaps = 33/295 (11%)
Query: 19 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 78
+ + A AVA + + A ++ + + + +E+++ G +
Sbjct: 38 VDFCQQDRG-HSLAEAVAKWDGMAGGKSA-IDYGYHIIVLDPTDSVIEELEVLPDLG-IT 94
Query: 79 AVKLYPAGATTNSQDGVTDL--------FGKCVHVLEE---MVEQNMPLLVHGEVTDPIV 127
+ K++ A N D VT L G V V E + V T PI
Sbjct: 95 SFKVFMAYRGMNMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIY 154
Query: 128 DIFDREKVF--IDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGF--VAATVTPQH 183
R T + + + + H+T ++++ V K A +
Sbjct: 155 HALSRPPRVEAEATARALALAEIVNAPIYIVHVTCEESLEEVMRAKSRGVRALAETCTHY 214
Query: 184 LVLNRNALFQGGLRPHNY-CLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE- 241
L L + L + Y P + + + +A+ +G + +D +
Sbjct: 215 LYLTKEDLERPDFEGAKYVFTPPARAKKDHDVLWNALRNG-VFETVSSDHCSWLFKGHKD 273
Query: 242 --------CACGCAGIYNA-PVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLP 287
G G+ + V E +L + + +G+
Sbjct: 274 RGRNDFRAIPNGAPGVEERLMMVYQG---VNEGRISLTQFVELVATRPAKVFGMF 325
>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
aldolase/transaldolase {Escherichia coli [TaxId: 562]}
Length = 220
Score = 29.4 bits (65), Expect = 0.44
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 55 MTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTN 90
M LYL DT+ +K + + AG TTN
Sbjct: 1 MELYL-DTSDVVAVKALSRIFPL-------AGVTTN 28
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase
pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]}
Length = 326
Score = 29.6 bits (66), Expect = 0.49
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 15/70 (21%)
Query: 102 CVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKV---------FIDTILQPLIQRL---- 148
V E +Q + D+ +REK FID I L + L
Sbjct: 247 AELVATEFFDQGDRERKELNI--EPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVS 304
Query: 149 PQLKVVMEHI 158
+++
Sbjct: 305 EDCFPLLDGC 314
>d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide
phosphodiesterase pde4d {Human (Homo sapiens) [TaxId:
9606]}
Length = 326
Score = 29.7 bits (66), Expect = 0.52
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 16/70 (22%)
Query: 102 CVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKV--------FIDTILQPLIQRL----- 148
++EE Q G I + D+ FID I+ PL +
Sbjct: 248 TDRIMEEFFRQGDRERERG---MEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVH 304
Query: 149 PQLKVVMEHI 158
P + +++ +
Sbjct: 305 PDAQDILDTL 314
>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermotoga maritima [TaxId:
2336]}
Length = 218
Score = 28.9 bits (64), Expect = 0.67
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 55 MTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTN 90
M ++L DT + +EIK + G+V G TTN
Sbjct: 3 MKIFL-DTANLEEIKKGVEWGIV-------DGVTTN 30
>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermus thermophilus [TaxId:
274]}
Length = 211
Score = 29.0 bits (64), Expect = 0.72
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 55 MTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTN 90
M LYL DT S +EI+ GV+ +G TTN
Sbjct: 1 MELYL-DTASLEEIREIAAWGVL-------SGVTTN 28
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 27.0 bits (58), Expect = 3.9
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 256 LSLYAKVFEEMGALDKLEAFTSFNGPDFY 284
++ A E+ G ++K+ Y
Sbjct: 459 INENADFIEKAGGMEKIFNCQQNENDKIY 487
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific
3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 324
Score = 25.7 bits (56), Expect = 7.4
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 15/66 (22%)
Query: 102 CVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKV--------FIDTILQPLIQRL----P 149
+LEE Q+ P+ DR+KV FI +L P+ + + P
Sbjct: 236 VDCLLEEYFMQSD---REKSEGLPVAPFMDRDKVTKATAQIGFIKFVLIPMFETVTKLFP 292
Query: 150 QLKVVM 155
++ +M
Sbjct: 293 MVEEIM 298
>d2e1da1 c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 319
Score = 25.4 bits (55), Expect = 9.5
Identities = 20/115 (17%), Positives = 32/115 (27%), Gaps = 24/115 (20%)
Query: 55 MTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCV------HVLEE 108
T + DT + I + P ATTN L ++EE
Sbjct: 9 FTTVVADTGDFNAID-----------EYKPQDATTNPS-----LILAAAQMPAYQELVEE 52
Query: 109 MVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDA 163
+ + G + I + D+ V + I +V DA
Sbjct: 53 AIAYGKK--LGGPQEEQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDA 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,223,605
Number of extensions: 56095
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 18
Length of query: 329
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,226,816
Effective search space: 298116288
Effective search space used: 298116288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)