BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020187
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
pdb|3CQL|B Chain B, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
Length = 243
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 171/235 (72%), Positives = 196/235 (83%)
Query: 93 RDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHE 152
R +F+Q+LKHRN+ AC KGFYTYDAFIAAAKSF +F RKREIAAFL QTSHE
Sbjct: 8 RSMFDQMLKHRNNPACPAKGFYTYDAFIAAAKSFPSFGTTGSTDVRKREIAAFLGQTSHE 67
Query: 153 TTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGP 212
TTGGWP+APDGPYAWGYCF +E+ +YC PS ++PCAPGK Y+GRGPIQ+S+NYNYGP
Sbjct: 68 TTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPIQLSWNYNYGP 127
Query: 213 AGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGR 272
G+A+ V+LLGNPD VA D ISFKTA WFWMTPQ+PKPSCHDVITG+W+PSA+DT AGR
Sbjct: 128 CGEALRVNLLGNPDLVATDRVISFKTALWFWMTPQAPKPSCHDVITGRWQPSAADTAAGR 187
Query: 273 LPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQRPF 327
LPGYGV+TNIINGG+ECGKG NP DRIGF++RYC IL V GNNLDC NQRPF
Sbjct: 188 LPGYGVITNIINGGLECGKGPNPQVADRIGFFRRYCGILGVGTGNNLDCYNQRPF 242
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DWX|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DYG|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
pdb|4DYG|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
Length = 244
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 166/232 (71%), Positives = 189/232 (81%)
Query: 96 FEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHETTG 155
F+++L HRND ACQ KGFYTYDAF+AAA +F F RKR++AAFLAQTSHETTG
Sbjct: 12 FDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTG 71
Query: 156 GWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGK 215
GW TAPDG +AWGYCFKQE+G DYC PS QWPCAPGK+Y+GRGPIQ+S+NYNYGPAG+
Sbjct: 72 GWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGR 131
Query: 216 AINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPG 275
AI VDLL NPD VA DPT+SFKTA WFWMT Q+PKPS H VITG+W PS +D AGR PG
Sbjct: 132 AIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPG 191
Query: 276 YGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQRPF 327
+GV+TNIINGG+ECG G + DRIGFYKRYCDIL V YG+NLDC NQRPF
Sbjct: 192 FGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 243
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|B Chain B, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
Length = 309
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/305 (60%), Positives = 215/305 (70%), Gaps = 6/305 (1%)
Query: 25 EQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTXXXXXXXXXXXXXXXXXXXXXXXXXXXX 84
EQCG+QAGGA CP LCCS++G+CG T +C
Sbjct: 2 EQCGAQAGGARCPNCLCCSRWGWCGTTSDFC------GDGCQSQCSGCGPTPTPTPPSPS 55
Query: 85 XXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAA 144
RDLFE+LL HRND AC +GFYTY+AF+AAA +F AF RKRE+AA
Sbjct: 56 DGVGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAA 115
Query: 145 FLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQI 204
FL QTSHETTGGWPTAPDGP++WGYCFKQEQ P DYCQPS +WPCAPG+KY+GRGPIQ+
Sbjct: 116 FLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQL 175
Query: 205 SYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPS 264
S+N+NYGPAG+AI VDLL NPD VA D T+SFKTA WFWMTPQ KPS HDVITG+W PS
Sbjct: 176 SFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPS 235
Query: 265 ASDTQAGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQ 324
+D AGR PGYGV+TNI+NGG+ECG G + +RIGFY+RYC + G NLDC NQ
Sbjct: 236 PADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQ 295
Query: 325 RPFNA 329
RPFN+
Sbjct: 296 RPFNS 300
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution
pdb|1CNS|B Chain B, Crystal Structure Of Chitinase At 1.91a Resolution
Length = 243
Score = 350 bits (899), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 167/235 (71%), Positives = 188/235 (80%)
Query: 93 RDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHE 152
R F+++L HRND ACQ KGFYTYDAF+AAA +F F +KRE+AAFLAQTSHE
Sbjct: 8 RAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFSGFGTTGSADVQKREVAAFLAQTSHE 67
Query: 153 TTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGP 212
TTGGW TAPDG +AWGYCFKQE+G DYC PS QWPCAPGK+Y+GRGPIQ+S+NYNYGP
Sbjct: 68 TTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGP 127
Query: 213 AGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGR 272
AG+AI VDLL NPD VA D T+SFKTA WFWMT Q PKPS H VI GQW PS +D AGR
Sbjct: 128 AGRAIGVDLLANPDLVATDATVSFKTAMWFWMTAQPPKPSSHAVIVGQWSPSGADRAAGR 187
Query: 273 LPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQRPF 327
+PG+GV+TNIINGGIECG G + DRIGFYKRYCDIL V YGNNLDC +QRPF
Sbjct: 188 VPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 242
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From
Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution
Length = 243
Score = 347 bits (890), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 166/235 (70%), Positives = 187/235 (79%)
Query: 93 RDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHE 152
R F+++L HRND ACQ KGFYTYDAF+AAA +F F +KRE+AAFLAQTSHE
Sbjct: 8 RAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHE 67
Query: 153 TTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGP 212
TTGGW TAPDG +AWGYCFKQE+G DYC PS QWPCAPGK+Y+GRGPIQ+S+NYNYGP
Sbjct: 68 TTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGP 127
Query: 213 AGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGR 272
AG+AI VDLL NPD VA D T+ FKTA WFWMT Q PKPS H VI GQW PS +D AGR
Sbjct: 128 AGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGR 187
Query: 273 LPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQRPF 327
+PG+GV+TNIINGGIECG G + DRIGFYKRYCDIL V YGNNLDC +QRPF
Sbjct: 188 VPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 242
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
pdb|3W3E|B Chain B, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
Length = 242
Score = 334 bits (857), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 155/233 (66%), Positives = 182/233 (78%), Gaps = 2/233 (0%)
Query: 95 LFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHETT 154
LF+QLLKHRND AC+GKGFY+Y+AFI AA+SF AF RKRE+AAFLAQTSHETT
Sbjct: 11 LFDQLLKHRNDQACEGKGFYSYNAFITAARSFAAFGTTGDSNTRKREVAAFLAQTSHETT 70
Query: 155 GGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAG 214
GG T+PDGPYAWGYCF E+ YC S PC+ GK Y+GRGPIQ+++NYNY AG
Sbjct: 71 GGAATSPDGPYAWGYCFVTERDKSNRYCDGSG--PCSAGKSYYGRGPIQLTHNYNYNAAG 128
Query: 215 KAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLP 274
+A+ VDL+ NPD VA D +SFKTA WFWMTPQ KPSCHDVIT +W PSA+D A R+P
Sbjct: 129 RALGVDLINNPDLVARDAVVSFKTALWFWMTPQGNKPSCHDVITNRWTPSAADKAANRVP 188
Query: 275 GYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQRPF 327
G+GV+TNIINGG+ECGKG P + DRIGFYKRYCD+ VSYG NL+C +QRPF
Sbjct: 189 GFGVITNIINGGLECGKGPTPASGDRIGFYKRYCDVFGVSYGPNLNCRDQRPF 241
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean
Length = 242
Score = 332 bits (852), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 154/233 (66%), Positives = 181/233 (77%), Gaps = 2/233 (0%)
Query: 95 LFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHETT 154
LF+QLLKHRND AC+GKGFY+Y+AF+ AA+SFG F RKRE+AAFLAQTSHETT
Sbjct: 10 LFDQLLKHRNDPACEGKGFYSYNAFVTAARSFGGFGTTGDTNTRKREVAAFLAQTSHETT 69
Query: 155 GGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAG 214
GG +PDGPYAWGYCF E+ YC P PC GK Y+GRGPIQ+++NYNY AG
Sbjct: 70 GGAAGSPDGPYAWGYCFVTERDKSNKYCDPGT--PCPAGKSYYGRGPIQLTHNYNYAQAG 127
Query: 215 KAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLP 274
+A+ VDL+ NPD VA D ISFKTA WFWMTPQ KPSCHDVIT +W PSA+D A R P
Sbjct: 128 RALGVDLINNPDLVARDAVISFKTAIWFWMTPQGNKPSCHDVITNRWTPSAADVAANRTP 187
Query: 275 GYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQRPF 327
G+GV+TNIINGGIECG+G +P + DRIGFYKRYCD+L +SYG NL+C +QRPF
Sbjct: 188 GFGVITNIINGGIECGRGPSPASGDRIGFYKRYCDVLHLSYGPNLNCRDQRPF 240
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea
Chitinase Catalytic Module (Bjchi3)
Length = 247
Score = 311 bits (797), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 143/237 (60%), Positives = 174/237 (73%), Gaps = 1/237 (0%)
Query: 93 RDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHE 152
RD F ++LKH ND C GF+TYDAFI AAKSF +F RK+EIAAF QTSHE
Sbjct: 11 RDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTSHE 70
Query: 153 TTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQ-QWPCAPGKKYFGRGPIQISYNYNYG 211
TTGGW APDG WGYC+K+E +C + +WPCAPGK Y+GRGP+ +S+NYNYG
Sbjct: 71 TTGGWSGAPDGANTWGYCYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYG 130
Query: 212 PAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAG 271
P G+ + ++LL NPD ++DP I+FKTA WFWMTPQ+PKPSCHDVIT QW+PSA+D AG
Sbjct: 131 PCGRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADISAG 190
Query: 272 RLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQRPFN 328
RLPGYGV+TNIINGG+EC +DRI FY RYC + V G+N+DC+NQRPFN
Sbjct: 191 RLPGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDCDNQRPFN 247
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|C Chain C, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|D Chain D, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
Length = 244
Score = 311 bits (796), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 143/237 (60%), Positives = 174/237 (73%), Gaps = 1/237 (0%)
Query: 93 RDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHE 152
RD F ++LKH ND C GF+TYDAFI AAKSF +F RK+EIAAF QTSHE
Sbjct: 8 RDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTSHE 67
Query: 153 TTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQ-QWPCAPGKKYFGRGPIQISYNYNYG 211
TTGGW APDG WGYC+K+E +C + +WPCAPGK Y+GRGP+ +S+NYNYG
Sbjct: 68 TTGGWSGAPDGANTWGYCYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYG 127
Query: 212 PAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAG 271
P G+ + ++LL NPD ++DP I+FKTA WFWMTPQ+PKPSCHDVIT QW+PSA+D AG
Sbjct: 128 PCGRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADISAG 187
Query: 272 RLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQRPFN 328
RLPGYGV+TNIINGG+EC +DRI FY RYC + V G+N+DC+NQRPFN
Sbjct: 188 RLPGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDCDNQRPFN 244
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
pdb|2Z39|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
Length = 246
Score = 308 bits (790), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 142/237 (59%), Positives = 173/237 (72%), Gaps = 1/237 (0%)
Query: 93 RDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHE 152
RD F ++LKH ND C GF+TYDAFI AAKSF +F RK+EIAAF QTSHE
Sbjct: 10 RDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTSHE 69
Query: 153 TTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQ-QWPCAPGKKYFGRGPIQISYNYNYG 211
TTGGW APDG WGYC+K+ +C + +WPCAPGK Y+GRGP+ +S+NYNYG
Sbjct: 70 TTGGWSGAPDGANTWGYCYKEAIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYG 129
Query: 212 PAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAG 271
P G+ + ++LL NPD ++DP I+FKTA WFWMTPQ+PKPSCHDVIT QW+PSA+D AG
Sbjct: 130 PCGRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADISAG 189
Query: 272 RLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQRPFN 328
RLPGYGV+TNIINGG+EC +DRI FY RYC + V G+N+DC+NQRPFN
Sbjct: 190 RLPGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDCDNQRPFN 246
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a
pdb|3HBE|X Chain X, Class Iv Chitinase Structure From Picea Abies At 1.55a
pdb|3HBH|A Chain A, Class Iv Chitinase Structure From Picea Abies At 2.25a
Length = 204
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 118/217 (54%), Gaps = 33/217 (15%)
Query: 106 AACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHETTGGWPTAPDGPY 165
++C+GKGFYTY+AFIAAA ++ F +KRE+AAF A HET G
Sbjct: 20 SSCEGKGFYTYNAFIAAANAYSGFGTTGSNDVKKRELAAFFANVMHETGG---------- 69
Query: 166 AWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNP 225
C+ E+ P +YCQ S WPC GK Y GRGP+Q+S+NYNYG AGK+I D L NP
Sbjct: 70 ---LCYINEKNPPINYCQSSSTWPCTSGKSYHGRGPLQLSWNYNYGAAGKSIGFDGLNNP 126
Query: 226 DAVANDPTISFKTAFWFWMTPQSPKPSCHDVIT-GQWKPSASDTQAGRLPGYGVVTNIIN 284
+ V D TISFKTA WFWM +CH IT GQ G+G IN
Sbjct: 127 EKVGQDSTISFKTAVWFWM----KNSNCHSAITSGQ--------------GFGGTIKAIN 168
Query: 285 GGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDC 321
+EC G++ R+ +YK+ C L V G N+ C
Sbjct: 169 -SMECNGGNSGEVSSRVNYYKKICSQLGVDPGANVSC 204
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
pdb|2CJL|B Chain B, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
Length = 204
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 107/228 (46%), Gaps = 33/228 (14%)
Query: 96 FEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHETTG 155
F+Q+ RN FYTY AA ++ F +K+E AAFLA HET G
Sbjct: 8 FDQMFPSRNS-------FYTYSGLTAALSAYPGFSNTGSDTVKKQEAAAFLANVGHETGG 60
Query: 156 GWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGK-KYFGRGPIQISYNYNYGPAG 214
Y +Q N YC SQ + C G KY+GRGP+Q+S+N+NY AG
Sbjct: 61 -----------LVYVVEQNTANYPHYCDASQPYGCPAGNDKYYGRGPVQLSWNFNYKAAG 109
Query: 215 KAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSC-HDVITGQWKPSASDTQAGRL 273
A+ +DLL NPD V ND +++KT W+W T P HD +
Sbjct: 110 DALGIDLLNNPDLVQNDSAVAWKTGLWYWNTQTGPGTMTPHDAMVNG------------- 156
Query: 274 PGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDC 321
G+G ING +EC G+ + RI Y+R+ +L V G NL C
Sbjct: 157 AGFGETIRSINGSLECDGGNPGQVQSRIDNYERFTQLLGVEPGGNLSC 204
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|1WVU|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|C Chain C, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
Length = 265
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 108/228 (47%), Gaps = 33/228 (14%)
Query: 96 FEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHETTG 155
F Q+ +RN FYTY A ++ AF +KRE AAFLA SHET G
Sbjct: 69 FNQMFPNRN-------AFYTYKGLTDALSAYPAFAKTGSDEVKKREAAAFLANVSHETGG 121
Query: 156 GWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKK-YFGRGPIQISYNYNYGPAG 214
+ Y + + N YC +Q + C G+ Y+GRGPIQ+S+N+NY AG
Sbjct: 122 LF-----------YIKEVNEANYPHYCDTTQSYGCPAGQAAYYGRGPIQLSWNFNYKAAG 170
Query: 215 KAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSP-KPSCHDVITGQWKPSASDTQAGRL 273
A+ ++LL NP V DP +++KT W+W + P + H+ I
Sbjct: 171 DALGINLLANPYLVEQDPAVAWKTGLWYWNSQNGPGTMTPHNAIVNN------------- 217
Query: 274 PGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDC 321
G+G ING +EC G+ + RI + ++ IL + G NL C
Sbjct: 218 AGFGETIRSINGALECNGGNPAQVQSRINKFTQFTQILGTTTGPNLSC 265
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q
pdb|1WVV|B Chain B, Crystal Structure Of Chitinase C Mutant E147q
Length = 265
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 108/228 (47%), Gaps = 33/228 (14%)
Query: 96 FEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHETTG 155
F Q+ +RN FYTY A ++ AF +KRE AAFLA SH+T G
Sbjct: 69 FNQMFPNRN-------AFYTYKGLTDALSAYPAFAKTGSDEVKKREAAAFLANVSHQTGG 121
Query: 156 GWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKK-YFGRGPIQISYNYNYGPAG 214
+ Y + + N YC +Q + C G+ Y+GRGPIQ+S+N+NY AG
Sbjct: 122 LF-----------YIKEVNEANYPHYCDTTQSYGCPAGQAAYYGRGPIQLSWNFNYKAAG 170
Query: 215 KAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSP-KPSCHDVITGQWKPSASDTQAGRL 273
A+ ++LL NP V DP +++KT W+W + P + H+ I
Sbjct: 171 DALGINLLANPYLVEQDPAVAWKTGLWYWNSQNGPGTMTPHNAIVNN------------- 217
Query: 274 PGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDC 321
G+G ING +EC G+ + RI + ++ IL + G NL C
Sbjct: 218 AGFGETIRSINGALECNGGNPAQVQSRINKFTQFTQILGTTTGPNLSC 265
>pdb|1Q9B|A Chain A, Crystal Structure Analysis Of Hev B 6.02 (Hevein) At 1.5
Angstroms Resolution
pdb|1HEV|A Chain A, Hevein: The Nmr Assignment And An Assessment Of
Solution- State Folding For The Agglutinin-Toxin Motif
Length = 43
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 25 EQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCT 56
EQCG QAGG +CP LCCS++G+CG+T YC+
Sbjct: 1 EQCGRQAGGKLCPNNLCCSQWGWCGSTDEYCS 32
>pdb|1WKX|A Chain A, Crystal Structure Of A Hev B 6.02 Isoallergen
Length = 43
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 25 EQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCT 56
EQCG QAGG +CP LCCS++G+CG+T YC+
Sbjct: 1 EQCGRQAGGKLCPDNLCCSQWGWCGSTDEYCS 32
>pdb|1T0W|A Chain A, 25 Nmr Structures Of Truncated Hevein Of 32 Aa
(Hevein-32) Complex With N,N,N-Triacetylglucosamina
Length = 33
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 25 EQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCT 56
EQCG QAGG +CP LCCS++G+CG+T YC+
Sbjct: 1 EQCGRQAGGKLCPNNLCCSQWGWCGSTDEYCS 32
>pdb|2LB7|A Chain A, Hevein-Type Antifungal Peptide With A Unique 10-Cysteine
Motif
Length = 44
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 24 AEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
A++CG QA GA CP LCC K+GFCG+ AYC
Sbjct: 1 AQRCGDQARGAKCPNCLCCGKYGFCGSGDAYC 32
>pdb|1EHD|A Chain A, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
Vi
pdb|1EHH|A Chain A, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
Vi Complex With Tri-N-Acetylchitotriose
pdb|1EHH|B Chain B, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
Vi Complex With Tri-N-Acetylchitotriose
Length = 89
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 26 QCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
+CGSQ GGA CPG CCS +G+CG++ YC
Sbjct: 2 RCGSQGGGATCPGLRCCSIWGWCGDSEPYC 31
>pdb|1ULK|A Chain A, Crystal Structure Of Pokeweed Lectin-C
pdb|1ULK|B Chain B, Crystal Structure Of Pokeweed Lectin-C
Length = 126
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 27 CGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
CG +A G VCP G CCS++G+CG T YC
Sbjct: 4 CGVRASGRVCPDGYCCSQWGYCGTTEEYC 32
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 26 QCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
+CG + GG C LCCS++G+CGN+ +C
Sbjct: 44 RCGKEFGGKECHDELCCSQYGWCGNSDGHC 73
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 26 QCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
+CG GG +C +CCS++G+CG T +C
Sbjct: 85 RCGKDFGGRLCTEDMCCSQYGWCGLTDDHC 114
>pdb|1ULN|A Chain A, Crystal Structure Of Pokeweed Lectin-D1
Length = 84
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 24 AEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
A +CG +A G CP G CCS++G+CG T YC
Sbjct: 1 APECGERASGKRCPNGKCCSQWGYCGTTDNYC 32
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 26 QCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
+CG GG +C +CCSK+G+CG + +C
Sbjct: 44 RCGRDFGGRLCEEDMCCSKYGWCGYSDDHC 73
>pdb|1ULM|A Chain A, Crystal Structure Of Pokeweed Lectin-D2 Complexed With
Tri-N- Acetylchitotriose
pdb|1ULM|B Chain B, Crystal Structure Of Pokeweed Lectin-D2 Complexed With
Tri-N- Acetylchitotriose
pdb|1UHA|A Chain A, Crystal Structure Of Pokeweed Lectin-D2
Length = 82
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 24 AEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
A +CG +A G CP G CCS++G+CG T YC
Sbjct: 1 APECGERASGKRCPNGKCCSQWGYCGTTDNYC 32
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 26 QCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
+CG GG +C +CCSK+G+CG + +C
Sbjct: 44 RCGRDFGGRLCEEDMCCSKYGWCGYSDDHC 73
>pdb|1WGC|A Chain A, 2.2 Angstroms Resolution Structure Analysis Of Two Refined
N- Acetylneuraminyllactose-Wheat Germ Agglutinin
Isolectin Complexes
pdb|1WGC|B Chain B, 2.2 Angstroms Resolution Structure Analysis Of Two Refined
N- Acetylneuraminyllactose-Wheat Germ Agglutinin
Isolectin Complexes
pdb|7WGA|A Chain A, 2.2 Angstroms Resolution Structure Analysis Of Two Refined
N- Acetylneuraminyllactose-Wheat Germ Agglutinin
Isolectin Complexes
pdb|7WGA|B Chain B, 2.2 Angstroms Resolution Structure Analysis Of Two Refined
N- Acetylneuraminyllactose-Wheat Germ Agglutinin
Isolectin Complexes
pdb|2CWG|A Chain A, Crystallographic Refinement And Structure Analysis Of The
Complex Of Wheat Germ Agglutinin With A Bivalent
Sialoglycopeptide From Glycophorin A
pdb|2CWG|B Chain B, Crystallographic Refinement And Structure Analysis Of The
Complex Of Wheat Germ Agglutinin With A Bivalent
Sialoglycopeptide From Glycophorin A
pdb|2UVO|A Chain A, High Resolution Crystal Structure Of Wheat Germ Agglutinin
In Complex With N-Acetyl-D-Glucosamine
pdb|2UVO|B Chain B, High Resolution Crystal Structure Of Wheat Germ Agglutinin
In Complex With N-Acetyl-D-Glucosamine
pdb|2UVO|E Chain E, High Resolution Crystal Structure Of Wheat Germ Agglutinin
In Complex With N-Acetyl-D-Glucosamine
pdb|2UVO|F Chain F, High Resolution Crystal Structure Of Wheat Germ Agglutinin
In Complex With N-Acetyl-D-Glucosamine
pdb|2X3T|A Chain A, Glutaraldehyde-Crosslinked Wheat Germ Agglutinin Isolectin
1 Crystal Soaked With A Synthetic Glycopeptide
pdb|2X3T|B Chain B, Glutaraldehyde-Crosslinked Wheat Germ Agglutinin Isolectin
1 Crystal Soaked With A Synthetic Glycopeptide
pdb|2X3T|C Chain C, Glutaraldehyde-Crosslinked Wheat Germ Agglutinin Isolectin
1 Crystal Soaked With A Synthetic Glycopeptide
pdb|2X3T|D Chain D, Glutaraldehyde-Crosslinked Wheat Germ Agglutinin Isolectin
1 Crystal Soaked With A Synthetic Glycopeptide
pdb|4AML|A Chain A, Crystal Structure Of Wheat Germ Agglutinin Isolectin 1 In
Complex With Glycosylurethan
pdb|4AML|B Chain B, Crystal Structure Of Wheat Germ Agglutinin Isolectin 1 In
Complex With Glycosylurethan
Length = 171
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 26 QCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
+CGSQAGG +CP LCCS++GFCG +C
Sbjct: 88 KCGSQAGGKLCPNNLCCSQWGFCGLGSEFC 117
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 23 SAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
++++CGSQAGGA C CCS++G+CG YC
Sbjct: 42 TSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYC 74
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 27 CGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
CG AGG VC CCSK+G CG P YC
Sbjct: 132 CGKDAGGRVCTNNYCCSKWGSCGIGPGYC 160
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 26 QCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
+CG Q CP LCCS++G+CG YC
Sbjct: 2 RCGEQGSNMECPNNLCCSQYGYCGMGGDYC 31
>pdb|2WGC|A Chain A, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|2WGC|B Chain B, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|9WGA|A Chain A, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|9WGA|B Chain B, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
Length = 171
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 23 SAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
++++CGSQAGGA CP CCS++G CG YC
Sbjct: 42 TSKRCGSQAGGATCPNNHCCSQYGHCGFGAEYC 74
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 26 QCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
+CGSQ+GG +CP LCCS++GFCG +C
Sbjct: 88 KCGSQSGGKLCPNNLCCSQWGFCGLGSEFC 117
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 27 CGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
CG AGG VC CCSK+G CG P YC
Sbjct: 132 CGKDAGGRVCTNNYCCSKWGSCGIGPGYC 160
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 26 QCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
+CG Q CP LCCS++G+CG YC
Sbjct: 2 RCGEQGSNMECPNNLCCSQYGYCGMGGDYC 31
>pdb|1WGT|A Chain A, X-Ray Structure Of Wheat Germ Agglutinin Isolectin 3
pdb|1WGT|B Chain B, X-Ray Structure Of Wheat Germ Agglutinin Isolectin 3
pdb|1K7T|A Chain A, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,6GAL Complex
pdb|1K7T|B Chain B, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,6GAL Complex
pdb|1K7U|A Chain A, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,4GLCNAC Complex
pdb|1K7U|B Chain B, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,4GLCNAC Complex
pdb|1K7V|A Chain A, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,6GALBETA1, 4glc
pdb|1K7V|B Chain B, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,6GALBETA1, 4glc
Length = 186
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 26 QCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
+CGSQAGG +CP LCCS++G+CG +C
Sbjct: 88 KCGSQAGGKLCPNNLCCSQWGYCGLGSEFC 117
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 23 SAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
++++CGSQAGG CP CCS++G CG YC
Sbjct: 42 TSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYC 74
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 27 CGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
CG AGG VC CCSK+G CG P YC
Sbjct: 132 CGKDAGGRVCTNNYCCSKWGSCGIGPGYC 160
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 26 QCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
+CG Q G CP LCCS++G+CG YC
Sbjct: 2 RCGEQGSGMECPNNLCCSQYGYCGMGGDYC 31
>pdb|2X52|A Chain A, Crystal Structure Of Wheat Germ Agglutinin Isolectin 3 In
Complex With A Synthetic Divalent Carbohydrate Ligand
pdb|2X52|B Chain B, Crystal Structure Of Wheat Germ Agglutinin Isolectin 3 In
Complex With A Synthetic Divalent Carbohydrate Ligand
Length = 171
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 26 QCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
+CGSQAGG +CP LCCS++G+CG +C
Sbjct: 88 KCGSQAGGKLCPNNLCCSQWGYCGLGSEFC 117
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 23 SAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
++++CGSQAGG CP CCS++G CG YC
Sbjct: 42 TSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYC 74
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 27 CGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
CG AGG VC CCSK+G CG P YC
Sbjct: 132 CGKDAGGRVCTNNYCCSKWGSCGIGPGYC 160
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 26 QCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
+CG Q G CP LCCS++G+CG YC
Sbjct: 2 RCGEQGSGMECPNNLCCSQYGYCGMGGDYC 31
>pdb|1IQB|A Chain A, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
I
pdb|1IQB|B Chain B, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
I
Length = 89
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 26 QCGSQAGGAVCPGGLCCSKFGFCGNTPAYC 55
+CGSQ GG CP CCS +G+CG++ YC
Sbjct: 2 RCGSQGGGGTCPALWCCSIWGWCGDSEPYC 31
>pdb|1MMC|A Chain A, 1h Nmr Study Of The Solution Structure Of Ac-Amp2
Length = 30
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 36 CPGGLCCSKFGFCGNTPAYC 55
CP G+CCS+FG+CG P YC
Sbjct: 9 CPSGMCCSQFGYCGKGPKYC 28
>pdb|1EIS|A Chain A, Uda Uncomplexed Form. Crystal Structure Of Urtica Dioica
Agglutinin, A Superantigen Presented By Mhc Molecules
Of Class I And Class Ii
Length = 87
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 26 QCGSQAGGA-VCPGGLCCSKFGFCGNTPAYC 55
+CGSQ GG+ CPG CCS +G+CG++ YC
Sbjct: 2 RCGSQGGGSGTCPGLRCCSIWGWCGDSEPYC 32
>pdb|1ZUV|A Chain A, 24 Nmr Structures Of Acamp2-Like Peptide With
Phenylalanine 18 Mutated To Tryptophan
Length = 30
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 36 CPGGLCCSKFGFCGNTPAYC 55
CP G+CCS++G+CG P YC
Sbjct: 9 CPSGMCCSQWGYCGKGPKYC 28
>pdb|1ZWU|A Chain A, 30 Nmr Structures Of Acamp2-Like Peptide With Non
Natural Beta-(2- Naphthyl)-Alanine Residue
Length = 30
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 36 CPGGLCCSKFGFCGNTPAYC 55
CP G+CCS+ G+CG P YC
Sbjct: 9 CPSGMCCSQXGYCGKGPKYC 28
>pdb|1EN2|A Chain A, Uda Tetrasaccharide Complex. Crystal Structure Of Urtica
Dioica Agglutinin, A Superantigen Presented By Mhc
Molecules Of Class I And Class Ii
pdb|1ENM|A Chain A, Uda Trisaccharide Complex. Crystal Structure Of Urtica
Dioica Agglutinin, A Superantigen Presented By Mhc
Molecules Of Class I And Class Ii
Length = 91
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 3/33 (9%)
Query: 26 QCGSQAGGA-VCPGGL--CCSKFGFCGNTPAYC 55
+CGSQ GG+ CPG L CCS +G+CG++ YC
Sbjct: 2 RCGSQGGGSGTCPGALRWCCSIWGWCGDSEPYC 34
>pdb|1ZNT|A Chain A, 18 Nmr Structures Of Acamp2-Like Peptide With Non
Natural Fluoroaromatic Residue (Acamp2f18pffY20PFF)
COMPLEX WITH N,N,N- Triacetylchitotriose
Length = 31
Score = 31.2 bits (69), Expect = 0.77, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 36 CPGGLCCSKFGFCGNTPAYC 55
CP G+CCS+ G CG P YC
Sbjct: 9 CPSGMCCSQXGXCGKGPKYC 28
>pdb|2KUS|A Chain A, Spatial Structure Of Antimicrobial Peptide Sm-Amp-1.1a
Length = 35
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 40 LCCSKFGFCGNTPAYCT 56
LCCS++G+CG+ P YC
Sbjct: 18 LCCSQYGYCGSGPKYCA 34
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 197 FGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDV 256
F GP+ Y G +D++ PD N P + F T W C D+
Sbjct: 80 FIAGPLGTPYE------GGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDI 133
Query: 257 ITGQWKPSAS 266
+ +W P+ +
Sbjct: 134 LKHEWSPALT 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.471
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,064,250
Number of Sequences: 62578
Number of extensions: 416965
Number of successful extensions: 702
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 57
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)