Query 020187
Match_columns 329
No_of_seqs 326 out of 1231
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:43:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00325 chitinase_glyco_hydro_ 100.0 7E-79 1.5E-83 561.5 17.3 230 91-321 1-230 (230)
2 PF00182 Glyco_hydro_19: Chiti 100.0 1E-79 2.2E-84 568.6 8.3 232 90-321 1-232 (232)
3 KOG4742 Predicted chitinase [G 100.0 1.3E-70 2.8E-75 513.2 16.6 262 17-321 21-286 (286)
4 COG3179 Predicted chitinase [G 100.0 1.7E-33 3.7E-38 248.6 7.9 181 89-311 2-204 (206)
5 cd00442 lysozyme_like lysozyme 99.6 3.4E-16 7.3E-21 128.1 3.6 105 143-283 1-105 (105)
6 PF00187 Chitin_bind_1: Chitin 99.4 2E-14 4.3E-19 98.3 0.5 40 24-63 1-40 (40)
7 smart00270 ChtBD1 Chitin bindi 99.3 6.9E-13 1.5E-17 89.7 2.8 38 26-63 1-38 (38)
8 cd00035 ChtBD1 Chitin binding 99.0 9.4E-11 2E-15 80.5 2.5 39 26-64 1-39 (40)
9 cd06918 ChtBD1_like Domain obs 97.3 0.00017 3.6E-09 52.1 2.2 38 23-60 3-49 (51)
10 PF02950 Conotoxin: Conotoxin; 63.2 3.4 7.3E-05 31.3 0.8 20 26-49 49-70 (75)
11 PF06607 Prokineticin: Prokine 43.7 11 0.00023 30.9 0.9 26 19-47 18-43 (97)
12 KOG3625 Alpha amylase [Carbohy 34.5 27 0.00058 39.3 2.3 46 198-245 1091-1143(1521)
13 PF09447 Cnl2_NKP2: Cnl2/NKP2 30.2 33 0.00072 26.2 1.6 20 86-105 15-34 (67)
14 PF03823 Neurokinin_B: Neuroki 27.4 51 0.0011 24.4 2.0 15 5-19 1-15 (59)
15 COG4672 gp18 Phage-related pro 26.3 69 0.0015 29.8 3.2 105 114-223 106-230 (231)
16 PF13956 Ibs_toxin: Toxin Ibs, 26.1 24 0.00052 20.3 0.1 10 4-13 1-10 (19)
17 KOG4063 Major epididymal secre 25.1 83 0.0018 27.9 3.3 13 3-15 1-13 (158)
18 PF02705 K_trans: K+ potassium 23.9 36 0.00077 35.9 1.0 45 194-243 224-276 (534)
19 PF15240 Pro-rich: Proline-ric 21.4 61 0.0013 29.4 1.8 6 21-26 13-18 (179)
20 cd08327 CARD_RAIDD Caspase act 21.3 81 0.0018 25.5 2.4 38 90-127 35-80 (94)
No 1
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en
Probab=100.00 E-value=7e-79 Score=561.51 Aligned_cols=230 Identities=71% Similarity=1.347 Sum_probs=223.4
Q ss_pred cchHHHHHHHhhcccccccCCCcccHHHHHHHHHhhhhccCCCCcccchhHHHHhhhccccccCCCCCCCCCCCCCCCcc
Q 020187 91 ISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFGTTGDTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYC 170 (329)
Q Consensus 91 vT~~~F~~ifp~~~~~~c~g~gfyty~~fi~A~~~f~~F~~~G~~~t~~re~AaFLAq~~hETg~g~~~~~~~~~~wg~~ 170 (329)
||+++|++||++|++..|++++||||++||+|+++||+|+++|+.+++||||||||||++|||++.+..++.++++||||
T Consensus 1 ~t~~~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa~~fp~f~~~g~~~~~krElAaFlAq~~hETgg~~~~~e~~~~~~g~c 80 (230)
T cd00325 1 VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFPGFGTTGDDDTRKREIAAFFAHTSHETGGGCYIAPDGPYAWGYC 80 (230)
T ss_pred CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhccccccCCCchhhHHHHHHHHhhhcccCCCCccccccccccCCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999888888999999999
Q ss_pred cccccCCCCCCccCCCCCCCCCCCccccCCcccccchhhHHHHHhhhCCCCCCCccccccCchhhhhhhhhhhhcCCCCC
Q 020187 171 FKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPK 250 (329)
Q Consensus 171 ~~~E~~~~~~Yc~~~~~~p~~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~nPdlva~dp~~a~~sA~wfW~~~~~~~ 250 (329)
+.+|..+...||.. ++|||+||++|||||+||||||+||++++++|++|||+|||||++||.+||++|+||||+++.+|
T Consensus 81 ~~~e~~~~~~~~~~-~~~pc~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~~Pdlva~dp~~a~~sA~WfW~t~~~~k 159 (230)
T cd00325 81 DKSETGPPSSYCDP-AQWPCAPGKKYYGRGPIQLSWNYNYGPAGKALGFDLLNNPDLVATDPVVSFKTAIWFWMTPQGPK 159 (230)
T ss_pred ccccCCCccccccc-CCCCCCcccccccCCceeeeehhhHHHHHHHhCCccccCHHHHhcCchhhhhhhhhheeeCCCCC
Confidence 99999887788876 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCCccccccCCCCCccchhheeeCCccCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcC
Q 020187 251 PSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDC 321 (329)
Q Consensus 251 ps~hd~i~g~w~p~~~d~~a~~~~~fg~~t~iINGg~eC~~~~~~~~~~R~~~y~~~~~~Lgv~~g~nl~c 321 (329)
|+|||||+|+|+|+++|+++++.++|+.||+|||||+||++++++++++||++|+++|++|||+||+||+|
T Consensus 160 ~s~h~vi~g~w~p~~~d~a~~~~~gfg~tt~iINGg~EC~~~~~~~~~~Ri~~Y~~~~~~lgv~~g~nL~C 230 (230)
T cd00325 160 PSCHDVITGTWTPSAADTAAGRGPGFGATTNIINGGLECGGGNPDQVQNRIGYYKRYCDMLGVSPGDNLDC 230 (230)
T ss_pred CCcceeeccCcCCchhhhhccccCChhhhheeecCCcccCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999
No 2
>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 19 GH19 from CAZY comprises enzymes with only one known activity; chitinase (3.2.1.14 from EC). Chitinases [] are enzymes that catalyse the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Chitinases belong to glycoside hydrolase families 18 or 19 []. Chitinases of family 19 (also known as classes IA or I and IB or II) are enzymes from plants that function in the defence against fungal and insect pathogens by destroying their chitin-containing cell wall. Class IA/I and IB/II enzymes differ in the presence (IA/I) or absence (IB/II) of a N-terminal chitin-binding domain. The catalytic domain of these enzymes consist of about 220 to 230 amino acid residues.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 3IWR_A 2DKV_A 3CQL_A 2Z38_A 2Z37_D 2Z39_B 1DXJ_A 1WVU_B 1WVV_B 2DBT_C ....
Probab=100.00 E-value=1e-79 Score=568.59 Aligned_cols=232 Identities=64% Similarity=1.269 Sum_probs=204.5
Q ss_pred ccchHHHHHHHhhcccccccCCCcccHHHHHHHHHhhhhccCCCCcccchhHHHHhhhccccccCCCCCCCCCCCCCCCc
Q 020187 90 LISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFGTTGDTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGY 169 (329)
Q Consensus 90 ivT~~~F~~ifp~~~~~~c~g~gfyty~~fi~A~~~f~~F~~~G~~~t~~re~AaFLAq~~hETg~g~~~~~~~~~~wg~ 169 (329)
|||+++|++|||+|++..|++++||||++||+|+++||.|+++|+.+++||||||||||++|||++++...+.++++|+|
T Consensus 1 ivt~~~F~~~~~~~n~~~c~~~~FYTY~~Fi~Aa~~fp~F~~tG~~~~~krElAAFLA~~~hET~g~~~~~e~~~~~~gy 80 (232)
T PF00182_consen 1 IVTESFFNQMFPHRNDNGCPGKGFYTYDAFIAAAKSFPAFGNTGDDEDRKRELAAFLAQVSHETGGFWYIEEIGPYAWGY 80 (232)
T ss_dssp TS-HHHHHHHTTTTTSTTSTTTTTS-HHHHHHHHTTSTTTTTSSSHHHHHHHHHHHHHHHHHHTTTTTTTBTTSGGGGTT
T ss_pred CCCHHHHHHHHhcCCccCCCCCCcccHHHHHHHhhcCchhccCccHHHHHHHHHhhhcccchhccccccccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999988888889999999
Q ss_pred ccccccCCCCCCccCCCCCCCCCCCccccCCcccccchhhHHHHHhhhCCCCCCCccccccCchhhhhhhhhhhhcCCCC
Q 020187 170 CFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSP 249 (329)
Q Consensus 170 ~~~~E~~~~~~Yc~~~~~~p~~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~nPdlva~dp~~a~~sA~wfW~~~~~~ 249 (329)
|+.+|......||++++++||+||++|||||+||||||+||++++++|++|||+|||||++||.+||++|+||||+++.+
T Consensus 81 c~~~e~~~~~~y~~~~~~~p~~~g~~Y~GRG~iQLT~~~NY~~~g~~lg~dl~~nP~lv~~d~~~a~~sA~wfW~~~~~~ 160 (232)
T PF00182_consen 81 CYKREKGANSDYCNRNGNYPCGDGKKYYGRGPIQLTWNYNYGAFGEALGLDLLNNPDLVATDPWLAFKSAIWFWMTPQPP 160 (232)
T ss_dssp S-SB-SS-SSGG--TTSSS--TTTTGGS-BTTTTB-SHHHHHHHHHHHTS-TTT-TTHHHH-HHHHHHHHHHHHHHSBTT
T ss_pred ccccccCCccccccCccCccCCCCCeEecccccccchhhhHHHHHHHhCCccccChHHHHhhHHHHHHhhhhheeecCCC
Confidence 99999887789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCCCccccccCCCCCccchhheeeCCccCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcC
Q 020187 250 KPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDC 321 (329)
Q Consensus 250 ~ps~hd~i~g~w~p~~~d~~a~~~~~fg~~t~iINGg~eC~~~~~~~~~~R~~~y~~~~~~Lgv~~g~nl~c 321 (329)
||++|+||+++|+|+..|..++|.++||.||+|||||+||+++++.++++||++|+++|++|||+||+||+|
T Consensus 161 ~ps~h~vi~~~w~p~~~~~~~~r~~gfG~t~~iINgg~Ec~~~~~~~~~~Ri~~y~~~~~~~~v~~g~nl~C 232 (232)
T PF00182_consen 161 KPSCHDVITGQWTPSAADLAAGRVPGFGATTNIINGGLECGGGNTDQVQNRIGYYKRYCDMLGVDPGDNLDC 232 (232)
T ss_dssp BSSHHHHHTTSS-HHHHHHHTTTTSSHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHT----S----
T ss_pred ccCcchhcccccCCchhhhhhccCCCcchhhhhccCccccCCCCchHHhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999988999999999999999999999999999
No 3
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=100.00 E-value=1.3e-70 Score=513.24 Aligned_cols=262 Identities=48% Similarity=0.972 Sum_probs=232.6
Q ss_pred HHHhhhccCccCCCCCCCcCCCCCccCcccccCCChhhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchHHH
Q 020187 17 LWINLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTGGCQSQCSGSPSPRPTKPTPVPAPSGGGNNIGSLISRDLF 96 (329)
Q Consensus 17 ~~~~~~~~~~Cg~~~~~~~C~~~~CCS~~G~CG~~~~~C~~gCq~~~~~~~~~~~~~p~~~~~~~~~~~~v~~ivT~~~F 96 (329)
+.+.++..+.|+ .. + ++++||+.||++. .|..+. +++-.+.++.+||+++|
T Consensus 21 ~~~~~~~~q~~~-~~-~----------------~~~~~~~~~c~~g--~c~~~~---------~~~p~~~i~~~~T~~~F 71 (286)
T KOG4742|consen 21 QSSSTVASQNCG-AS-N----------------TTPPYCKFGCGPG--PCSGPG---------PPNPASKIESSVTPELF 71 (286)
T ss_pred HHHHhhhcccCC-CC-c----------------cccccccCCCCCC--CCCCCC---------CCCCcccccccccHHHH
Confidence 444667778885 21 1 7789999999996 554321 11224679999999999
Q ss_pred HHHHhhcccccccCCCcccHHHHHHHHHhhhhccCCCCcccchhHHHHhhhccccccCCCCCCCCCCCCCCCcccccccC
Q 020187 97 EQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFGTTGDTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQG 176 (329)
Q Consensus 97 ~~ifp~~~~~~c~g~gfyty~~fi~A~~~f~~F~~~G~~~t~~re~AaFLAq~~hETg~g~~~~~~~~~~wg~~~~~E~~ 176 (329)
++||++++..+|++++||+|++||.|+++||+|+++|+..+.|||+|+||||++|||++||..++++++.|+|||++|+.
T Consensus 72 ~~i~~~~~~g~c~~~gfyty~aFi~Aa~sfp~fg~t~~~~~~kreiAaf~ah~~~ETs~g~~~~~~G~~~~~fc~~~e~s 151 (286)
T KOG4742|consen 72 EDIFSKVGSGWCPAKGFYTYDAFIIAARSFPEFGGTGNKNTAKREIAAFFAHVTHETSGGSNCAPRGPFYWGFCYKEEIS 151 (286)
T ss_pred HHHhccccCCCCCCCCCccccHHHHHHHhcccccccCcccccchhhhhhhhhheecccCcccccCCCccccCcccccccC
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCCCccCC-CC-CCCCCCCccccCCcccccchhhHHHHHhhhCCCCCCCccccccCchhhhhhhhhhhhcCCCCCCCc
Q 020187 177 N-PGDYCQPS-QQ-WPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSC 253 (329)
Q Consensus 177 ~-~~~Yc~~~-~~-~p~~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~nPdlva~dp~~a~~sA~wfW~~~~~~~ps~ 253 (329)
. ...||+.+ .. |||.+|+.|+|||+|||+|||||++++++|++|||+|||+|+.||.+||++|+||||++
T Consensus 152 ~~~~~YC~~s~~~~yPCs~gk~Y~GRG~iQlsWNyNYG~ag~alg~dLL~~Pe~V~~np~lAf~~alWfwmt~------- 224 (286)
T KOG4742|consen 152 PSSGRYCDASNQITYPCSPGKSYYGRGPIQLSWNYNYGAAGKALGLDLLRNPELVAMNPVLAFKAALWFWMTP------- 224 (286)
T ss_pred hhhhccCCcccceEeecCCCCcccccCcccccccccccHhHhhcCchhhcCcchhccCchhhhheeeeeeccC-------
Confidence 8 57999976 44 99999999999999999999999999999999999999999999999999999999997
Q ss_pred cccccCCCCCCccccccCCCCCccchhheeeCCccCCCCCCcc-HHHHHHHHHHHHHHcCCCCCCCCcC
Q 020187 254 HDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIECGKGSNPN-AEDRIGFYKRYCDILKVSYGNNLDC 321 (329)
Q Consensus 254 hd~i~g~w~p~~~d~~a~~~~~fg~~t~iINGg~eC~~~~~~~-~~~R~~~y~~~~~~Lgv~~g~nl~c 321 (329)
|.|..+|.++.|.++||.||+||||++||+.++.++ .++||++|++++++|||+||+||+|
T Consensus 225 -------~~p~~~~~a~~~~~gFGaTt~~Ing~~EC~~~~~~~~~~~Ri~~y~~~c~~fGv~pG~nLsC 286 (286)
T KOG4742|consen 225 -------VRPVLNDFAAYDTPGFGATTRAINGDLECGGGNLDGVKARRIKYYLAYCGLFGVNPGPNLSC 286 (286)
T ss_pred -------CchhhhhhhcccCCCcchhhhhhccceeccCCCCCcchhHHHHHHHHHHHhhCCCCCCCCCC
Confidence 344555666778899999999999999999887554 5569999999999999999999999
No 4
>COG3179 Predicted chitinase [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=248.62 Aligned_cols=181 Identities=28% Similarity=0.410 Sum_probs=142.1
Q ss_pred cccchHHHHHHHhhcccccccCCCcccHHHHHHHHHh-hhhccCCCCcccchhHHHHhhhccccccCCCCCC-CCCCCCC
Q 020187 89 SLISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKS-FGAFGTTGDTDTRKREIAAFLAQTSHETTGGWPT-APDGPYA 166 (329)
Q Consensus 89 ~ivT~~~F~~ifp~~~~~~c~g~gfyty~~fi~A~~~-f~~F~~~G~~~t~~re~AaFLAq~~hETg~g~~~-~~~~~~~ 166 (329)
..||+.+|.+|||++.. . ...++.|+.. +..| .|+++.| +||||||+.|||+| ++. .++.+|+
T Consensus 2 ~~i~e~~~~ki~p~a~k------~---~~~v~~al~~~l~~~----gi~~p~r-~AmFlAQ~~HESgg-f~rl~EnlnYS 66 (206)
T COG3179 2 KTITEVDLRKIFPKARK------E---FVDVIVALQPALDEA----GITTPLR-QAMFLAQVMHESGG-FTRLDENLNYS 66 (206)
T ss_pred cchhHHHHHHhcchhhh------h---hHHHHHHHHHHHHHh----cCCCHHH-HHHHHHHHhhhcCC-ceeehhhcchH
Confidence 47899999999998642 2 2345555543 4455 5778888 99999999999998 443 6777887
Q ss_pred C-------Ccccc-----cccCCC------CCCccCCCCCC--CCCCCccccCCcccccchhhHHHHHhhhCCCCCCCcc
Q 020187 167 W-------GYCFK-----QEQGNP------GDYCQPSQQWP--CAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPD 226 (329)
Q Consensus 167 w-------g~~~~-----~E~~~~------~~Yc~~~~~~p--~~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~nPd 226 (329)
| +-+|+ +|+... ..|-.+.+|.| .+|||+|+|||.|||||+.||+.+++++|.||+.||+
T Consensus 67 aq~L~~tf~~r~~~~~~a~~~~g~p~aian~~y~~RlGN~~e~sgDGw~yRgrg~iQiTGrdNY~~~g~alg~dlv~~P~ 146 (206)
T COG3179 67 AQGLLQTFPKRFPDFRYAREIAGNPPAIANRVYGTRLGNGPEKSGDGWLYRGRGLIQITGRDNYRRCGRALGLDLVANPG 146 (206)
T ss_pred HHHHHHhccccCCchhhhhhhccChHHHHhhhhcccccCCCCCCCCceeeccCcceeeecchHHHHHHHhhCCCccCChh
Confidence 4 33333 333221 25656667764 7999999999999999999999999999999999999
Q ss_pred ccccCchhhhhhhhhhhhcCCCCCCCccccccCCCCCCccccccCCCCCccchhheeeCCccCCCCCCccHHHHHHHHHH
Q 020187 227 AVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKR 306 (329)
Q Consensus 227 lva~dp~~a~~sA~wfW~~~~~~~ps~hd~i~g~w~p~~~d~~a~~~~~fg~~t~iINGg~eC~~~~~~~~~~R~~~y~~ 306 (329)
++..+ .++.++|+|||.+...++ .+++ .++..||++||||. +++++|...|++
T Consensus 147 ~~~~~-~~~a~~a~wyw~~~g~n~------------------~aD~-gd~~~VT~~INGG~-------NG~~dR~~r~~~ 199 (206)
T COG3179 147 QLELD-PHAARVAAWYWKTRGLNA------------------LADE-GDLVRVTRKINGGL-------NGLDDRLARYRR 199 (206)
T ss_pred hhccC-hHhhhhHHHHHHhccHHH------------------hhcc-CChhhhhhhhcCcc-------ccHHHHHHHHHH
Confidence 99875 479999999999987754 1332 67999999999999 999999999999
Q ss_pred HHHHc
Q 020187 307 YCDIL 311 (329)
Q Consensus 307 ~~~~L 311 (329)
+..+|
T Consensus 200 a~~v~ 204 (206)
T COG3179 200 ASGVL 204 (206)
T ss_pred Hhccc
Confidence 87654
No 5
>cd00442 lysozyme_like lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.
Probab=99.61 E-value=3.4e-16 Score=128.06 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=84.0
Q ss_pred HHhhhccccccCCCCCCCCCCCCCCCcccccccCCCCCCccCCCCCCCCCCCccccCCcccccchhhHHHHHhhhCCCCC
Q 020187 143 AAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLL 222 (329)
Q Consensus 143 AaFLAq~~hETg~g~~~~~~~~~~wg~~~~~E~~~~~~Yc~~~~~~p~~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll 222 (329)
|.|+++.+||+.++ +..++. .|| ||..|+.|+|||+||+||++||...++.+++|++
T Consensus 1 a~~~~i~~~E~~~~-------------~~~~~~----Gy~------~~~~~~~~~~~G~~q~~~~~~~~~~~~~~~~~~~ 57 (105)
T cd00442 1 AIIDMLASSEGTDL-------------KAYKDR----GHG------TLNPGERGYGIGLYQLTSRWSDAYRARGIGLKLL 57 (105)
T ss_pred ChhhhhhhcccCCC-------------cccccC----CCC------CCCCCCcccccCceeeeeccCccccccccCcchh
Confidence 57889999999883 323221 355 6777889999999999999999999999999999
Q ss_pred CCccccccCchhhhhhhhhhhhcCCCCCCCccccccCCCCCCccccccCCCCCccchhhee
Q 020187 223 GNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNII 283 (329)
Q Consensus 223 ~nPdlva~dp~~a~~sA~wfW~~~~~~~ps~hd~i~g~w~p~~~d~~a~~~~~fg~~t~iI 283 (329)
++|++++.+|.+++..++||||+....++++|.. +++.+.|+...+||
T Consensus 58 ~~~~~~~~~~~~~~~~a~~~~~~~~n~~~~~~~~-------------~~~~~~~~~~~~~~ 105 (105)
T cd00442 58 AQLILKLFNPKVQDKQALQQIKNAGALIMSSFRS-------------RGAVRQLILINSAI 105 (105)
T ss_pred cCcchhccCchHHHHHHHHHHHhccCCCCcccch-------------hccccccceeeeeC
Confidence 9999999999999999999999987766665543 23345666666554
No 6
>PF00187 Chitin_bind_1: Chitin recognition protein; InterPro: IPR001002 A number of plant and fungal proteins that bind N-acetylglucosamine (e.g. solanaceous lectins of tomato and potato, plant endochitinases, the wound-induced proteins: hevein, win1 and win2, and the Kluyveromyces lactis killer toxin alpha subunit) contain this domain []. The domain may occur in one or more copies and is thought to be involved in recognition or binding of chitin subunits [, ]. In chitinases, as well as in the potato wound-induced proteins, the 43-residue domain directly follows the signal sequence and is therefore at the N terminus of the mature protein; in the killer toxin alpha subunit it is located in the central section of the protein. ; GO: 0008061 chitin binding; PDB: 9WGA_B 2WGC_B 1ULK_B 2UVO_B 1WGC_B 2CWG_A 2X3T_C 4AML_B 7WGA_B 1ZWU_A ....
Probab=99.43 E-value=2e-14 Score=98.32 Aligned_cols=40 Identities=68% Similarity=1.621 Sum_probs=36.0
Q ss_pred cCccCCCCCCCcCCCCCccCcccccCCChhhhhhhhhhcC
Q 020187 24 AEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTGGCQSQC 63 (329)
Q Consensus 24 ~~~Cg~~~~~~~C~~~~CCS~~G~CG~~~~~C~~gCq~~~ 63 (329)
+++||++.++.+||.++|||+|||||+|.+||+.+||++|
T Consensus 1 a~~CG~~~~~~~Cp~~~CCS~~G~CG~t~~yCg~gCQ~~C 40 (40)
T PF00187_consen 1 AQRCGRQAGGATCPNGLCCSQYGYCGTTSDYCGAGCQSQC 40 (40)
T ss_dssp -CBSSGGGTTBBSGGG-EEETTSBEESSHHHHSTTEESST
T ss_pred CcccccCcCCCcCCCCCccCCCCcccCChhhhhcccccCC
Confidence 5799999999999999999999999999999999999765
No 7
>smart00270 ChtBD1 Chitin binding domain.
Probab=99.33 E-value=6.9e-13 Score=89.69 Aligned_cols=38 Identities=68% Similarity=1.610 Sum_probs=36.2
Q ss_pred ccCCCCCCCcCCCCCccCcccccCCChhhhhhhhhhcC
Q 020187 26 QCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTGGCQSQC 63 (329)
Q Consensus 26 ~Cg~~~~~~~C~~~~CCS~~G~CG~~~~~C~~gCq~~~ 63 (329)
+||+++++.+|+.+.|||+|||||++.+||+.|||++|
T Consensus 1 ~CG~~~g~~~C~~~~CCS~~G~CG~t~~yCg~gCqs~c 38 (38)
T smart00270 1 RCGSQAGGKVCPNNLCCSQFGYCGSGDEYCGKGCQSQC 38 (38)
T ss_pred CCcCCCCCCcCCCCCccCCCcCccCCHHHHhccccCCC
Confidence 69999999999999999999999999999999999865
No 8
>cd00035 ChtBD1 Chitin binding domain, involved in recognition or binding of chitin subunits; fold analogous to hevein; occurs in plant and fungal proteins that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and K.lactis killer toxin alpha subunit, occurs singly or multiply
Probab=99.05 E-value=9.4e-11 Score=80.47 Aligned_cols=39 Identities=64% Similarity=1.494 Sum_probs=36.8
Q ss_pred ccCCCCCCCcCCCCCccCcccccCCChhhhhhhhhhcCC
Q 020187 26 QCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTGGCQSQCS 64 (329)
Q Consensus 26 ~Cg~~~~~~~C~~~~CCS~~G~CG~~~~~C~~gCq~~~~ 64 (329)
+||+++++..|+.+.|||++||||++.+||+.+||+.|.
T Consensus 1 ~Cg~~~~~~~C~~~~CCS~~G~CG~t~~~Cg~gcq~~c~ 39 (40)
T cd00035 1 NCGRQAGGGGCPPGLCCSQFGYCGTTDDYCGRGCQSGCW 39 (40)
T ss_pred CCCccCCCCcCCCCccccccccccCCccccccccccccC
Confidence 699999999999999999999999999999999999764
No 9
>cd06918 ChtBD1_like Domain observed in several metazoan proteins. The pattern of conserved cysteine residues resembles that of chitin binding domains found in plants and fungi.
Probab=97.27 E-value=0.00017 Score=52.14 Aligned_cols=38 Identities=32% Similarity=0.831 Sum_probs=29.3
Q ss_pred ccCccCCCC-----CCCcCCC---CCccCcccccCCChhhhh-hhhh
Q 020187 23 SAEQCGSQA-----GGAVCPG---GLCCSKFGFCGNTPAYCT-GGCQ 60 (329)
Q Consensus 23 ~~~~Cg~~~-----~~~~C~~---~~CCS~~G~CG~~~~~C~-~gCq 60 (329)
.+++||..+ +-+.|.. ..|||.+||||.+.+||. .+|-
T Consensus 3 ~dgrCG~~~p~~~g~~~~CdPdg~~pCCS~~gwCG~t~~hC~C~~Cv 49 (51)
T cd06918 3 KDGRCGPKFPLPGGKPPECDPDSPKPCCSNGGYCGSGSEHCDCPGCV 49 (51)
T ss_pred cCCccCCCccCCCCCccccCCCCCCcccCCCceeCCCcccccCCCCc
Confidence 467888766 2245754 699999999999999997 6663
No 10
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=63.20 E-value=3.4 Score=31.25 Aligned_cols=20 Identities=35% Similarity=1.012 Sum_probs=10.0
Q ss_pred ccCCCCCCCcC-C-CCCccCcccccC
Q 020187 26 QCGSQAGGAVC-P-GGLCCSKFGFCG 49 (329)
Q Consensus 26 ~Cg~~~~~~~C-~-~~~CCS~~G~CG 49 (329)
+|... +..| . ...|||. +|.
T Consensus 49 ~C~~~--g~~C~~~~~~CC~~--~C~ 70 (75)
T PF02950_consen 49 RCTPP--GSYCCKRNSECCSG--SCN 70 (75)
T ss_dssp -EB-T--TSB-BTTTTCBSSS--CEE
T ss_pred ccCCC--CCcCCCCCCCCCCC--ccC
Confidence 56544 3567 3 3677776 665
No 11
>PF06607 Prokineticin: Prokineticin; InterPro: IPR023569 The prokineticin family includes prokinectin itself and related proteins such as BM8 and the AVIToxins. The suprachiasmatic nucleus (SCN) controls the circadian rhythm of physiological and behavioural processes in mammals. It has been shown that prokineticin 2 (PK2), a cysteine-rich secreted protein, functions as an output molecule from the SCN circadian clock. PK2 messenger RNA is rhythmically expressed in the SCN, and the phase of PK2 rhythm is responsive to light entrainment. Molecular and genetic studies have revealed that PK2 is a gene that is controlled by a circadian clock []. The prokinectin domain is found in the prokinectin family and the hainantoxins, where it comprises the whole length of the protein. This domain is also found at the C terminus of some members of the Dickkopf family.; PDB: 1IMT_A 2KRA_A.
Probab=43.74 E-value=11 Score=30.87 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=14.2
Q ss_pred HhhhccCccCCCCCCCcCCCCCccCcccc
Q 020187 19 INLASAEQCGSQAGGAVCPGGLCCSKFGF 47 (329)
Q Consensus 19 ~~~~~~~~Cg~~~~~~~C~~~~CCS~~G~ 47 (329)
.+++..+.|-.+. -|..+.||..+-|
T Consensus 18 ~~~vitg~C~~d~---dCg~G~CCA~~~~ 43 (97)
T PF06607_consen 18 DAAVITGACESDA---DCGPGTCCAVSNW 43 (97)
T ss_dssp -----SSC-SSGG---GT-TTEEECE-SS
T ss_pred ceeEEeccccCcC---CCCCCceeCcccc
Confidence 3446678888774 6988999998644
No 12
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=34.47 E-value=27 Score=39.31 Aligned_cols=46 Identities=20% Similarity=0.432 Sum_probs=33.3
Q ss_pred cCCcccccchhhHHH-----HHhhhCCCCCCCccccc--cCchhhhhhhhhhhhc
Q 020187 198 GRGPIQISYNYNYGP-----AGKAINVDLLGNPDAVA--NDPTISFKTAFWFWMT 245 (329)
Q Consensus 198 GRG~iQLT~~~NY~~-----~g~~lg~dll~nPdlva--~dp~~a~~sA~wfW~~ 245 (329)
=||.+-+||||+=.+ |.+.|..-|+ |.|+. ..|.+..+-|+|||+.
T Consensus 1091 LrG~ll~TGRy~EAr~iIlaFa~tlrHGLI--PNLLd~G~~~RyNcRDA~W~wl~ 1143 (1521)
T KOG3625|consen 1091 LRGILLITGRYVEARNIILAFAGTLRHGLI--PNLLDEGIYARYNCRDAVWWWLQ 1143 (1521)
T ss_pred cccceEeecchHHHHHHHHHHHHHhhcccc--chhhhccccccccchHHHHHHHH
Confidence 479999999998543 4455555566 55543 3688999999999974
No 13
>PF09447 Cnl2_NKP2: Cnl2/NKP2 family protein; InterPro: IPR018565 This entry includes the Cnl2 kinetochore protein [].
Probab=30.17 E-value=33 Score=26.19 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=16.9
Q ss_pred CcccccchHHHHHHHhhccc
Q 020187 86 NIGSLISRDLFEQLLKHRND 105 (329)
Q Consensus 86 ~v~~ivT~~~F~~ifp~~~~ 105 (329)
.+.+|||-++|.++||.+..
T Consensus 15 ~L~~iisl~qF~~LFPr~~~ 34 (67)
T PF09447_consen 15 SLPDIISLEQFRKLFPRRLR 34 (67)
T ss_pred ccccccCHHHHHHHccccCC
Confidence 46789999999999997653
No 14
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=27.40 E-value=51 Score=24.41 Aligned_cols=15 Identities=40% Similarity=0.180 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHH
Q 020187 5 MRLLWGSALALALWI 19 (329)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (329)
||..+|++..|++.+
T Consensus 1 MR~~lLf~aiLalsl 15 (59)
T PF03823_consen 1 MRSTLLFAAILALSL 15 (59)
T ss_pred ChhHHHHHHHHHHHH
Confidence 565545544444443
No 15
>COG4672 gp18 Phage-related protein [Function unknown]
Probab=26.30 E-value=69 Score=29.82 Aligned_cols=105 Identities=21% Similarity=0.315 Sum_probs=51.7
Q ss_pred ccHHHHHHHHHhhhhccCCCCcccchhHH--HHhhhccccccCCC--CCC----CCCC---C--------CCCCcccccc
Q 020187 114 YTYDAFIAAAKSFGAFGTTGDTDTRKREI--AAFLAQTSHETTGG--WPT----APDG---P--------YAWGYCFKQE 174 (329)
Q Consensus 114 yty~~fi~A~~~f~~F~~~G~~~t~~re~--AaFLAq~~hETg~g--~~~----~~~~---~--------~~wg~~~~~E 174 (329)
-+|..|++|+| |+. +++ ..++.+|+ --|+-|.+.||.-- |.- ..+| | -.|.|+ -.|
T Consensus 106 ~~yarfLDAvN-F~~-GNp--~ADPeQe~~~~w~ieq~s~~t~~~~~f~Lssp~d~~G~~~P~Rqm~an~C~W~YR-g~e 180 (231)
T COG4672 106 RVYARFLDAVN-FVA-GNP--EADPEQELVDRWVVEQKSELTAETASFVLSTPTETDGALFPGRQMLANTCTWDYR-GDE 180 (231)
T ss_pred hhHHhhhhhhc-ccC-CCC--CCChhHHHHHhhhhhhccccccceEEEEEcCccccCccccccceeecccccceec-CCC
Confidence 57999999987 432 222 12233333 34666777666531 110 0111 1 125555 233
Q ss_pred cCCC-CCCccCCCCCCCCCCCccccCCcccccchhhHHHHHhhhCCCCCC
Q 020187 175 QGNP-GDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLG 223 (329)
Q Consensus 175 ~~~~-~~Yc~~~~~~p~~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~ 223 (329)
-+.. ..|.|...|-...+.+.+.++-+-----|.|+..||-.++.+++.
T Consensus 181 CgYtG~a~~De~dnpt~Dp~kD~Cs~~~~~C~~R~~~~nfGgF~~~~~l~ 230 (231)
T COG4672 181 CGYTGPAVADEFDNPTTDPSKDKCSKCLRGCKMRFNADNFGGFLSINKLS 230 (231)
T ss_pred CCCCCccccccCCCCCCCcchhhhcccccchhhhcCccccCccccchhhc
Confidence 3222 123333333223344555555555555677777777777766653
No 16
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=26.09 E-value=24 Score=20.27 Aligned_cols=10 Identities=20% Similarity=0.205 Sum_probs=5.5
Q ss_pred chHHHHHHHH
Q 020187 4 YMRLLWGSAL 13 (329)
Q Consensus 4 ~~~~~~~~~~ 13 (329)
|||++.+++.
T Consensus 1 MMk~vIIlvv 10 (19)
T PF13956_consen 1 MMKLVIILVV 10 (19)
T ss_pred CceehHHHHH
Confidence 5776644444
No 17
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=25.05 E-value=83 Score=27.92 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=7.7
Q ss_pred hchHHHHHHHHHH
Q 020187 3 LYMRLLWGSALAL 15 (329)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (329)
|||++++++++++
T Consensus 1 m~ms~~~~v~l~a 13 (158)
T KOG4063|consen 1 MMMSFLKTVILLA 13 (158)
T ss_pred CchHHHHHHHHHH
Confidence 5677666555543
No 18
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=23.87 E-value=36 Score=35.93 Aligned_cols=45 Identities=36% Similarity=0.732 Sum_probs=31.1
Q ss_pred CccccCCcccccchh--------hHHHHHhhhCCCCCCCccccccCchhhhhhhhhhh
Q 020187 194 KKYFGRGPIQISYNY--------NYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFW 243 (329)
Q Consensus 194 ~~Y~GRG~iQLT~~~--------NY~~~g~~lg~dll~nPdlva~dp~~a~~sA~wfW 243 (329)
--++||.+||++|-. ||--=+.+ |++|||.+. ||-+......++|
T Consensus 224 mGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~----ll~~p~~~~-npFf~~~P~~~~~ 276 (534)
T PF02705_consen 224 MGHFGRKPIRIAWFFLVFPALLLNYFGQGAL----LLSHPEAVS-NPFFLLIPEWLLW 276 (534)
T ss_pred hccccchhhhhhHHHHHHHHHHHHHccHHHH----HHcCcchhh-hHHHHHhHHHHHH
Confidence 468999999999987 55322222 788998775 6866655554455
No 19
>PF15240 Pro-rich: Proline-rich
Probab=21.38 E-value=61 Score=29.44 Aligned_cols=6 Identities=50% Similarity=0.645 Sum_probs=2.4
Q ss_pred hhccCc
Q 020187 21 LASAEQ 26 (329)
Q Consensus 21 ~~~~~~ 26 (329)
+++++.
T Consensus 13 LSSAQ~ 18 (179)
T PF15240_consen 13 LSSAQS 18 (179)
T ss_pred hhhccc
Confidence 344443
No 20
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=21.28 E-value=81 Score=25.48 Aligned_cols=38 Identities=13% Similarity=0.345 Sum_probs=25.5
Q ss_pred ccchHHHHHHHhhccccc--------ccCCCcccHHHHHHHHHhhh
Q 020187 90 LISRDLFEQLLKHRNDAA--------CQGKGFYTYDAFIAAAKSFG 127 (329)
Q Consensus 90 ivT~~~F~~ifp~~~~~~--------c~g~gfyty~~fi~A~~~f~ 127 (329)
|+|+++.+.|-....... -|.+|...|+.|++|+..||
T Consensus 35 IlT~~~~e~I~a~~T~~~k~~~LLdiLp~RG~~AF~~F~~aL~e~~ 80 (94)
T cd08327 35 ILTESHVEEIESQTTSRRKTMKLLDILPSRGPKAFHAFLDSLEEFP 80 (94)
T ss_pred CCCHHHHHHHHccCChHHHHHHHHHHHHhhChhHHHHHHHHHHHHH
Confidence 777777777765432211 14457778899999998876
Done!