Query 020189
Match_columns 329
No_of_seqs 259 out of 1462
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 07:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2058 Ypt/Rab GTPase activat 100.0 2.1E-56 4.6E-61 423.4 23.7 275 33-328 87-370 (436)
2 smart00164 TBC Domain in Tre-2 100.0 7.3E-44 1.6E-48 312.7 18.2 194 114-308 2-198 (199)
3 KOG2222 Uncharacterized conser 100.0 7E-43 1.5E-47 325.3 14.8 220 102-323 155-377 (848)
4 COG5210 GTPase-activating prot 100.0 2.2E-41 4.8E-46 335.0 20.8 218 104-322 200-422 (496)
5 KOG4347 GTPase-activating prot 100.0 3E-39 6.5E-44 311.9 18.7 257 37-323 149-405 (671)
6 KOG2223 Uncharacterized conser 100.0 3.3E-39 7.2E-44 297.9 16.4 225 100-328 285-527 (586)
7 PF00566 RabGAP-TBC: Rab-GTPas 100.0 7.2E-38 1.6E-42 276.8 17.8 201 119-321 1-208 (214)
8 KOG2221 PDZ-domain interacting 100.0 7.3E-37 1.6E-41 260.3 5.2 224 32-283 42-267 (267)
9 KOG1092 Ypt/Rab-specific GTPas 100.0 3.9E-33 8.5E-38 257.7 13.2 222 103-326 175-439 (484)
10 KOG4567 GTPase-activating prot 100.0 5.3E-32 1.1E-36 241.8 13.5 216 104-321 23-324 (370)
11 KOG4436 Predicted GTPase activ 100.0 3.1E-31 6.7E-36 260.2 18.0 216 103-323 564-787 (948)
12 KOG1102 Rab6 GTPase activator 100.0 2.6E-30 5.6E-35 247.9 13.0 214 104-323 133-349 (397)
13 KOG1093 Predicted protein kina 100.0 4.2E-29 9E-34 238.2 17.6 208 106-321 345-554 (725)
14 KOG2224 Uncharacterized conser 99.9 3.3E-24 7.1E-29 198.8 14.0 219 103-321 421-690 (781)
15 KOG2197 Ypt/Rab-specific GTPas 99.8 1.8E-21 3.8E-26 190.5 9.0 205 114-321 175-402 (488)
16 KOG4436 Predicted GTPase activ 99.8 4.8E-21 1E-25 188.9 11.7 219 104-323 172-402 (948)
17 KOG2595 Predicted GTPase activ 99.8 1.7E-20 3.7E-25 169.9 11.7 211 105-325 47-267 (395)
18 KOG1091 Ypt/Rab-specific GTPas 99.8 3.1E-19 6.7E-24 170.9 12.0 165 157-321 103-325 (625)
19 KOG2801 Probable Rab-GAPs [Int 99.5 1.2E-12 2.6E-17 117.3 13.6 215 105-321 31-250 (559)
20 KOG3636 Uncharacterized conser 99.4 5.4E-13 1.2E-17 125.1 11.3 195 116-329 36-238 (669)
21 KOG1648 Uncharacterized conser 97.1 1.9E-05 4E-10 75.9 -5.4 187 107-306 549-744 (813)
22 PF14961 BROMI: Broad-minded p 96.1 0.043 9.3E-07 58.8 10.7 134 187-321 1088-1238(1296)
23 KOG2224 Uncharacterized conser 95.3 0.0054 1.2E-07 58.5 0.5 34 199-232 566-599 (781)
24 KOG1102 Rab6 GTPase activator 84.0 0.18 3.9E-06 49.0 -1.8 129 161-321 2-130 (397)
25 PF10815 ComZ: ComZ; InterPro 68.2 6.6 0.00014 26.5 2.8 40 253-292 6-45 (56)
26 KOG2197 Ypt/Rab-specific GTPas 31.8 16 0.00034 36.7 0.0 30 108-137 69-98 (488)
27 PF08109 Antimicrobial14: Lact 29.9 41 0.0009 19.2 1.5 15 199-213 3-17 (31)
28 TIGR02433 lysidine_TilS_C tRNA 26.6 21 0.00046 22.9 -0.0 24 105-128 19-43 (47)
29 PF13041 PPR_2: PPR repeat fam 24.7 91 0.002 19.9 2.8 26 263-288 24-49 (50)
30 PF12829 Mhr1: Transcriptional 21.2 18 0.0004 27.4 -1.3 37 114-150 38-74 (91)
No 1
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-56 Score=423.38 Aligned_cols=275 Identities=44% Similarity=0.708 Sum_probs=228.6
Q ss_pred ccccccccCCcccCCcCc----hhHHHHHHHHHHHHhHHHHHHHHhccCCccccccccccchhhhhhhcccccCCCCHHH
Q 020189 33 TVKFQDLYGFTVEGNVDD----VNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAIT 108 (329)
Q Consensus 33 ~~~~~D~yGF~~~~~~~~----~~~~~~~~~~~~~~~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 108 (329)
+...+|+|||........ .+.+....+...+++.+|+..+.++ .+|.. +-.....+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~k~~s~~~~~~~r~~~~~~l~~~~~-~~~~~-----------------~~~~~~~s~e 148 (436)
T KOG2058|consen 87 KNNGFDQYSLQKLIGLPPSDGYLKWLSSYLAYEERRQLRWELELQSN-IKLHS-----------------PNDFPPRSDE 148 (436)
T ss_pred ccCcccccchhhcccCCcchhhhHHHHHhhhhhhhHHHHHHHHhhhh-hcccc-----------------cccccCCcHH
Confidence 345789999875432222 1222222233334445777766655 66642 1112347899
Q ss_pred HHHHHHhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCC-CCCCCcc--hHHHH
Q 020189 109 LKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGH-PWLDTPD--GHATL 185 (329)
Q Consensus 109 Lk~~i~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~-~~f~~~~--~~~~L 185 (329)
||++||+|||+++|+.||..++|....... .++|++++.....+.++..+||+.|+.||||++ +.|.+++ ++..|
T Consensus 149 lk~liRkGiP~~~R~~VW~~~~g~~~~~~~--~~~yq~ll~~~~~~~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~L 226 (436)
T KOG2058|consen 149 LKRLIRKGIPPELRGEVWWVLSGARRQLNY--PGYYQELLRKGDEKKSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTL 226 (436)
T ss_pred HHHHHHcCCChhhhhHHHHHHhcchhhccC--chhHHHHHhcCCCccchHHHHHHhccccccCCCcccCCCCCchHHHHH
Confidence 999999999999999999999994443322 468998887765556689999999999999999 7888765 48999
Q ss_pred HHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHH
Q 020189 186 RRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIA 265 (329)
Q Consensus 186 ~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~ 265 (329)
+|||.||+.+||.||||||||++||+||++|++||+|||||+.+++++++. ||++++.|.++++.+|+.+++..+|+|+
T Consensus 227 rRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~-Yyt~nL~g~qvDQ~VL~~llre~lPkl~ 305 (436)
T KOG2058|consen 227 RRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPR-YYTPNLIGSQVDQKVLRELLREKLPKLS 305 (436)
T ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchh-hcCchhhhhhccHHHHHHHHHHHCHHHH
Confidence 999999999999999999999999999999977999999999999999865 9999999999999999999999999999
Q ss_pred hhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhh--hhhccC
Q 020189 266 SHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVR--FLLTLN 328 (329)
Q Consensus 266 ~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~--~il~l~ 328 (329)
.||+.++++.++++++||+|+|++++|.++++||||++|+||.+++|++|+|+++.. +++..+
T Consensus 306 ~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr~Alai~k~~ee~il~~~ 370 (436)
T KOG2058|consen 306 LHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKVLFRVALAILKKHEEEILKED 370 (436)
T ss_pred HhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999993 355443
No 2
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=7.3e-44 Score=312.65 Aligned_cols=194 Identities=43% Similarity=0.757 Sum_probs=176.3
Q ss_pred HhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCc--chHHHHHHHHHH
Q 020189 114 RKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--DGHATLRRVLVG 191 (329)
Q Consensus 114 ~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~--~~~~~L~rVL~a 191 (329)
++|||+++|+.+|+.++|+.....+.....|+++.+.....+....++|++||+||+|++++|+.+ .+++.|.|||.+
T Consensus 2 ~~Gip~~~R~~vW~~ll~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~~ 81 (199)
T smart00164 2 RKGVPPSLRGVVWKLLLNAQPMDTSADKDLYSRLLKETAPKDKSIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKA 81 (199)
T ss_pred CCCCCHHHHHHHHHHHhCCchhhhcccchHHHHHHHhhcCCChhhHHHHhcccCCCCCCchhhcCCCcccHHHHHHHHHH
Confidence 689999999999999999987654333567888887654443345789999999999999999864 589999999999
Q ss_pred hhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHHhhhhh-
Q 020189 192 YSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEA- 270 (329)
Q Consensus 192 y~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~- 270 (329)
|+.+||++||||||++|||+|++++++|++|||+|++++++.. ..+|.++++++...+.+++.+++.++|+|++||++
T Consensus 82 ~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~ 160 (199)
T smart00164 82 YALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYG-PNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDK 160 (199)
T ss_pred HHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC-cccCCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHh
Confidence 9999999999999999999999999789999999999999987 47788998999999999999999999999999996
Q ss_pred cCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCc
Q 020189 271 LDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGA 308 (329)
Q Consensus 271 ~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~ 308 (329)
.|+++.+|+.+||+|+|++.+|++.++||||+|+++|.
T Consensus 161 ~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 161 LGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred cCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999995
No 3
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=7e-43 Score=325.33 Aligned_cols=220 Identities=35% Similarity=0.686 Sum_probs=206.6
Q ss_pred CCCCHHHHHHHHHh-CCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCc-
Q 020189 102 SLANAITLKKLIRK-GIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP- 179 (329)
Q Consensus 102 ~~~~~~kLk~~i~~-GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~- 179 (329)
...+.+|++.+++. |||+.+|+.+|+.|+|+..++... +..|++++++..+.......||++|+-|+.|++..|..+
T Consensus 155 ~~~ktdk~~~llkeggiphslr~~lw~rlsga~~kkk~a-e~sy~~ilk~~andk~~~~~qiekdllr~lpnn~cf~k~n 233 (848)
T KOG2222|consen 155 MELKTDKFEELLKEGGIPHSLRAFLWMRLSGALAKKKDA-ETSYEDILKACANDKLMIGKQIEKDLLRILPNNACFSKKN 233 (848)
T ss_pred cccchHHHHHHHHcCCCCcchhHHHHHHhhhhhhhhccc-cccHHHHHHHhcccccchhHHHHHHHHHhCCCcceeeCCC
Confidence 34578999999975 599999999999999998776654 467999999988888888999999999999999999765
Q ss_pred -chHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHH
Q 020189 180 -DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLV 258 (329)
Q Consensus 180 -~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 258 (329)
.|.+.|+|||++.+...|++||||||.-|+|.||++| .||.|||++.++++.++|..||+..+-|++.+.++...++.
T Consensus 234 ~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~-~ee~afwmmaaiiedilp~nfysqtllgiqaderv~~~li~ 312 (848)
T KOG2222|consen 234 GEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFC-EEENAFWMMAAIIEDILPANFYSQTLLGIQADERVMHHLIA 312 (848)
T ss_pred CcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHh-cchhHHHHHHHHHHHhcCchhhhhhHhccchhHHHHHHHHH
Confidence 5799999999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred hhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhhh
Q 020189 259 KQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRF 323 (329)
Q Consensus 259 ~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~~ 323 (329)
.+.|++-+.|+.+.+..++.+..||+|+|++++.....+||||.||++|.-.+|++.++|||+++
T Consensus 313 ~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g~i~ifql~i~ilkmke 377 (848)
T KOG2222|consen 313 CHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGGINIFQLIIGILKMKE 377 (848)
T ss_pred hccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCcchhHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999944
No 4
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=2.2e-41 Score=334.98 Aligned_cols=218 Identities=41% Similarity=0.681 Sum_probs=199.0
Q ss_pred CCHHHHHHHHHhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcC-CCCc--ccchhhhccCCcCCCCCCCCCcc
Q 020189 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEG-KVTP--ATKQIDHDLPRTFPGHPWLDTPD 180 (329)
Q Consensus 104 ~~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~-~~~~--~~~qI~~Dl~RT~~~~~~f~~~~ 180 (329)
....+++.++++|||..+|+.+|..++|+.......+ ..|..+...... .... +..+|++||.||+|.+..|+.+.
T Consensus 200 ~~~~~~~~~i~~gip~~~r~~vw~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~i~~Dl~rt~~~~~~f~~~~ 278 (496)
T COG5210 200 VQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNP-GLYERLLNLHREAKIPTQEIISQIEKDLSRTFPDNSLFQTEI 278 (496)
T ss_pred hhHHHHHHHHHhcCChHhhhhhHHHHhccchhhccCc-hHHHHHHHHHHhcCCCcHHHHHHHHccccccccccccccCcc
Confidence 4778999999999999999999999999987766544 556666653332 2223 68999999999999999999887
Q ss_pred hHHH--HHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHH
Q 020189 181 GHAT--LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLV 258 (329)
Q Consensus 181 ~~~~--L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 258 (329)
++.. |+|||.||+.+||++||||||++|||+||++|++|++||||+++++++...+++|..++.|++.++.++..+++
T Consensus 279 s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v~ 358 (496)
T COG5210 279 SIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVE 358 (496)
T ss_pred cccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHHH
Confidence 7666 99999999999999999999999999999999669999999999999776799999999999999999999999
Q ss_pred hhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhh
Q 020189 259 KQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVR 322 (329)
Q Consensus 259 ~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~ 322 (329)
..+|++|+||.+.|+...+|+++||+|+|.+.+|.+.++||||++|++|..++|.+++|+++..
T Consensus 359 ~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~~ 422 (496)
T COG5210 359 ELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLL 422 (496)
T ss_pred HHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999983
No 5
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=100.00 E-value=3e-39 Score=311.85 Aligned_cols=257 Identities=37% Similarity=0.653 Sum_probs=225.0
Q ss_pred ccccCCcccCCcCchhHHHHHHHHHHHHhHHHHHHHHhccCCccccccccccchhhhhhhcccccCCCCHHHHHHHHHhC
Q 020189 37 QDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKG 116 (329)
Q Consensus 37 ~D~yGF~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~kLk~~i~~G 116 (329)
.+.+||......+..... .+++ .+++.|.+.....|.+- +. .+..+++++++.|
T Consensus 149 ~~~~~~~~~~~~~~d~~~--lre~--~k~k~W~~~f~~~G~~~-------------~~---------~qt~~~~Klv~~g 202 (671)
T KOG4347|consen 149 ESALGFGEKGKYKIDPRA--LREW--AKEKFWKKYFIKDGPNM-------------NQ---------IQTILLRKLLYNG 202 (671)
T ss_pred cchhcccccCCCCCChHH--HHHH--HHHHHHHHHHHHhcccc-------------cH---------HHHHHHHHHHHHh
Confidence 678888754443332222 2222 33346777654444432 22 2678999999999
Q ss_pred CCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCcchHHHHHHHHHHhhhcC
Q 020189 117 IPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRD 196 (329)
Q Consensus 117 IP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~~~~~~L~rVL~ay~~~n 196 (329)
||...|+++|..++|+-.....++ ++|.++++...++.+-..+.|++|++|..|+|+-|+++.|...|+|||.||++.|
T Consensus 203 ipe~~rgeiW~l~sGav~~~l~~~-Geygkll~~~~G~~~~a~eEIE~Dl~rsLpEhpA~Q~e~gi~aLR~vL~Aya~~N 281 (671)
T KOG4347|consen 203 FPEDPRGEIWYLASGAVASLLLNP-GEYGKLLHSVTGKRSVATEEIEPDLGRSLPEHPAFQSEPGIAALRRVLTAYAWSN 281 (671)
T ss_pred cCCChHHHHHHhhhHHHHHhhcCc-HHhhhhhhcccCCcccccccccCCCCCCCCcchhhhCCCchhhHHHHHHhhhccC
Confidence 999999999999999877776665 6899999988888888999999999999999999999999999999999999999
Q ss_pred CCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHHhhhhhcCCChh
Q 020189 197 SDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVS 276 (329)
Q Consensus 197 p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~ 276 (329)
|+|||||.||.+++.+++++ .||+|||+++++++.+. ++||+....|...++.+|+.+++.+.|.++.|+..+| ...
T Consensus 282 p~vGYcQaMNIV~s~lll~~-~EEeafwll~~lce~~i-p~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~ 358 (671)
T KOG4347|consen 282 PEVGYCQAMNIVGSELLLFC-KEEEAFWLLSKLCEIYI-PDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLS 358 (671)
T ss_pred CchhHHHHHHHHHHhhhhhh-ccchHHHHHHHHHHHhc-ccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccc
Confidence 99999999999999999998 89999999999999986 7999999999999999999999999999999999999 688
Q ss_pred hhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhhh
Q 020189 277 LVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRF 323 (329)
Q Consensus 277 ~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~~ 323 (329)
+...+||+|+|...+|++..+||-|+||.+|+++||.+||||++.|.
T Consensus 359 ~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~rvlFqiaLail~~N~ 405 (671)
T KOG4347|consen 359 TVSLSWFLSLFLSLMPLEYAVRILDCFFYEGPRVLFQIALAILKQNA 405 (671)
T ss_pred eEeeHHHHHHHHHHcchHHHHHHHhhhhhcccHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999965
No 6
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.3e-39 Score=297.93 Aligned_cols=225 Identities=29% Similarity=0.501 Sum_probs=196.2
Q ss_pred ccCCCCHHHHHHHHHhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhc---------------CCCCcccchhhh
Q 020189 100 LSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVE---------------GKVTPATKQIDH 164 (329)
Q Consensus 100 ~~~~~~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~---------------~~~~~~~~qI~~ 164 (329)
|....++.+.+.+.|.|||+.+||+||....|..-+. ....|.....+.. ........+|+.
T Consensus 285 We~m~~SrR~relWwQGiP~~VRGkvW~laIGNel~i---t~elfd~~la~Aker~ak~~aeq~~~sa~~re~sv~~i~L 361 (586)
T KOG2223|consen 285 WEDMLKSRRVRELWWQGIPPSVRGKVWSLAIGNELNI---TYELFDIALARAKEREAKSLAEQMSNSAADREASVELIKL 361 (586)
T ss_pred hHHHHhhHHHHHHHHccCChhhcchhhHhhhCccccc---CHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchhheee
Confidence 3444578999999999999999999999999864322 1234443332211 112245779999
Q ss_pred ccCCcCCCCCCCCCc-chHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCc
Q 020189 165 DLPRTFPGHPWLDTP-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNL 243 (329)
Q Consensus 165 Dl~RT~~~~~~f~~~-~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~ 243 (329)
|+.||||...+|+.+ .-.+.|..+|.||+.|.|++||+|||++|||+|++.| ++.+||.+|.+++++.+...+|..+.
T Consensus 362 DisrTfpsl~iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnm-d~~~AFiafANLLdkp~q~Aff~~d~ 440 (586)
T KOG2223|consen 362 DISRTFPSLSIFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNM-DLADAFIAFANLLDKPCQQAFFRVDH 440 (586)
T ss_pred chhccCcceeeeccCCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcC-CcHHHHHHHHHHhccHHHHHHHhcCc
Confidence 999999999999875 3589999999999999999999999999999999999 89999999999999998889999999
Q ss_pred hhhhHHHHHHHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhhh
Q 020189 244 SGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRF 323 (329)
Q Consensus 244 ~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~~ 323 (329)
+.+...+..|+..+++.+|+|+.||+++++.|..|..+|+.++|+..+|++.++||||+|+.+|..++|+.+++||++-+
T Consensus 441 s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeFlfr~~lgIlklye 520 (586)
T KOG2223|consen 441 SSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFLFRTALGILKLYE 520 (586)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999943
Q ss_pred --hhccC
Q 020189 324 --LLTLN 328 (329)
Q Consensus 324 --il~l~ 328 (329)
++.|+
T Consensus 521 pkLl~mD 527 (586)
T KOG2223|consen 521 PKLLVMD 527 (586)
T ss_pred chHhhhh
Confidence 55554
No 7
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=7.2e-38 Score=276.81 Aligned_cols=201 Identities=37% Similarity=0.631 Sum_probs=169.6
Q ss_pred CchHHHHHHHhHcchhh-hc-----cCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCcchHHHHHHHHHHh
Q 020189 119 PVLRPKVWFSLSGAAKK-KS-----TVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGY 192 (329)
Q Consensus 119 ~~~R~~vW~~llg~~~~-~~-----~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~~~~~~L~rVL~ay 192 (329)
+++|+.+|+.++|..+. .. ......+............+..++|++|+.||++++..+..+.+++.|.+||.+|
T Consensus 1 ~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~~~~~~~~l~~iL~~~ 80 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEPNYSNNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFKNEQNQKSLERILSAY 80 (214)
T ss_dssp -CCHHHHHHHHCTCSCHHHHHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCSTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHccchhhhhhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhhhcchHHHHHHHHHHh
Confidence 46899999999998530 00 0001112222223334456779999999999999778888889999999999999
Q ss_pred hhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHHhhhhhcC
Q 020189 193 SFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALD 272 (329)
Q Consensus 193 ~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~ 272 (329)
+.++|++||||||+.|++++++++.+|++||||++++++ ..++.+|..+.++++..+..++.+++.++|++++||++.|
T Consensus 81 ~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~ 159 (214)
T PF00566_consen 81 AKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLN-YYLPDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQLG 159 (214)
T ss_dssp HHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHT-HHGGGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred ccccccccccchhhhhhhhhhhhcccccchhccccchhc-ccccccccccccccchhhhhHHHHHHhhhhhhhhhhhhhh
Confidence 999999999999999999999776689999999999994 4458999999999999999999999999999999999999
Q ss_pred CChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchH-HHHHHHHHHhh
Q 020189 273 FDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKV-LFHVALAIFKV 321 (329)
Q Consensus 273 i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~-l~~~alailk~ 321 (329)
+++..|+.+||+|+|++.+|.+.++|||| ++++|.++ ++++++|+++.
T Consensus 160 ~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~~~~l~~~~lail~~ 208 (214)
T PF00566_consen 160 VDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGYKFFLFFIALAILKY 208 (214)
T ss_dssp -GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCTTHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999 77799988 99999999988
No 8
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-37 Score=260.34 Aligned_cols=224 Identities=30% Similarity=0.502 Sum_probs=193.0
Q ss_pred cccccccccCCcccCCcCchhHHHHHHHHHHHHhHHHHHHHHhccCCccccccccccchhhhhhhcccccCCCCHHHHHH
Q 020189 32 ITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKK 111 (329)
Q Consensus 32 ~~~~~~D~yGF~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~kLk~ 111 (329)
......|++||....+..+.+........++.|+.+|..|. ++|.... ..+-++++.
T Consensus 42 ~v~n~pdr~gfi~~~q~a~~~k~~~~~~~L~~ReskwL~ml----dnw~~~m-------------------~kk~~~ir~ 98 (267)
T KOG2221|consen 42 EVTNLPDRFGFIEGEQGAQGKKEPETRGELRYRESKWLHML----DNWHEEM-------------------RKKQKKIRP 98 (267)
T ss_pred hhhcCCcccceeecccccccCCCcccHHHHHhhHHHHHHHH----HHHHHHH-------------------Hhccccccc
Confidence 33445599999976555555555555677888888999997 7785321 024578999
Q ss_pred HHHhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCc--chHHHHHHHH
Q 020189 112 LIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--DGHATLRRVL 189 (329)
Q Consensus 112 ~i~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~--~~~~~L~rVL 189 (329)
+|++|||+++|+++|+.|+|+......++ ..|.++..+.. +....+.|.+|++|.||.|.+|.+. .|++.|+|+|
T Consensus 99 rcrkgippslr~Raw~ylsGa~~~~~~np-~~~~~~~~~pG--~p~t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~l 175 (267)
T KOG2221|consen 99 RCRKGIPPSLRGRAWRYLSGAPSPPPKNP-VVFDELGPAPG--DPKTAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVL 175 (267)
T ss_pred hhhcCCCcccchhHHHhhcCCCCCCCCCc-chhhhccCCCC--CCcchhhhccccccCCCcccccccccccchHHHHHHH
Confidence 99999999999999999999988776665 45777655432 3567889999999999999999774 4799999999
Q ss_pred HHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHHhhhh
Q 020189 190 VGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLE 269 (329)
Q Consensus 190 ~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~ 269 (329)
.||+.++|+.||||+-..|||++|+.| ++++||||++.+++.++ ++||+.++..++.+..++..|+++.+|-.|.|+.
T Consensus 176 ka~ti~~pe~g~cq~qapiaa~llmhm-p~rdaf~~~vqicekyl-qgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~ 253 (267)
T KOG2221|consen 176 KAYTIYKPEEGYCQAQAPIAAVLLMHM-PARDAFWCFVQICEKYL-QGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLG 253 (267)
T ss_pred HHHHHhCchhhhhhhhchHHHHHHhcc-cHHHHHHHHHHHHHHHc-ccccccchhhhhcccHHHHHHHHhcCCCCCcccc
Confidence 999999999999999999999999999 69999999999999997 8999999999999999999999999999999999
Q ss_pred hcCCChhhhhHHHH
Q 020189 270 ALDFDVSLVATEWF 283 (329)
Q Consensus 270 ~~~i~~~~~~~~Wf 283 (329)
..++++.+|.+.||
T Consensus 254 ~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 254 GDKVDPLLYMTEWF 267 (267)
T ss_pred cCCCCHHHhhhccC
Confidence 99999999999997
No 9
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-33 Score=257.67 Aligned_cols=222 Identities=27% Similarity=0.452 Sum_probs=191.2
Q ss_pred CCCHHHHHHHHHhCCCCchHHHHHHHhHcchhhhccCc-------hHHHHHHHHHhcC------CCCcccchhhhccCCc
Q 020189 103 LANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVP-------ESYYNDLTKAVEG------KVTPATKQIDHDLPRT 169 (329)
Q Consensus 103 ~~~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~~~-------~~~y~~l~~~~~~------~~~~~~~qI~~Dl~RT 169 (329)
..+.++|+++++.|||..+|+.+|+.++|+........ ...|.+++..... ...+..+||..|++|+
T Consensus 175 ~id~~~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~~~~~~d~~rQI~id~prm 254 (484)
T KOG1092|consen 175 IIDLEKLRKLCWNGVPSKMRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTNGDEDQDTWRQIPIDIPRM 254 (484)
T ss_pred cccHHHHHHHccCCCCccccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCCccccCccccccccCCCCC
Confidence 45889999999999999999999999999854433221 1234455444332 2345789999999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhh-------------------------cCHHHHHH
Q 020189 170 FPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVM-------------------------KTEEDAFW 224 (329)
Q Consensus 170 ~~~~~~f~~~~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~-------------------------~~Ee~aF~ 224 (329)
.|..+.|..+..|+.+.|||..++.++|..||+||.++++.+++.++ .-|.||||
T Consensus 255 ~p~~~l~q~~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyW 334 (484)
T KOG1092|consen 255 NPHIPLFQQKIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYW 334 (484)
T ss_pred CccccchhhHHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHH
Confidence 99999999999999999999999999999999999999999888765 13889999
Q ss_pred HHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHH
Q 020189 225 MLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLF 304 (329)
Q Consensus 225 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l 304 (329)
|+.++++.+ ++.|....+|++.....++.+++..++.+|+||+++|++..+|+++||.|||.+.+|+.+++|+||.|+
T Consensus 335 ClskLLD~I--QDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~iRlWDTY~ 412 (484)
T KOG1092|consen 335 CLSKLLDGI--QDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCTIRLWDTYL 412 (484)
T ss_pred HHHHHHHHh--hhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhHHHHHHHhh
Confidence 999999987 688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCc---hHHHHHHHHHHhh--hhhhc
Q 020189 305 YEGA---KVLFHVALAIFKV--RFLLT 326 (329)
Q Consensus 305 ~eG~---~~l~~~alailk~--~~il~ 326 (329)
+|+. .++..||.|+|-- .+|++
T Consensus 413 aE~dgf~~FhvYvcAAFL~kW~~eL~e 439 (484)
T KOG1092|consen 413 AEPDGFNEFHVYVCAAFLLKWSSELME 439 (484)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9966 6778888887755 44543
No 10
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=99.98 E-value=5.3e-32 Score=241.84 Aligned_cols=216 Identities=26% Similarity=0.476 Sum_probs=175.3
Q ss_pred CCHHHHHHHHHhCCC--CchHHHHHHHhHcchhhhccCc-------hHHHHHHHHHhc--------------C-------
Q 020189 104 ANAITLKKLIRKGIP--PVLRPKVWFSLSGAAKKKSTVP-------ESYYNDLTKAVE--------------G------- 153 (329)
Q Consensus 104 ~~~~kLk~~i~~GIP--~~~R~~vW~~llg~~~~~~~~~-------~~~y~~l~~~~~--------------~------- 153 (329)
.+.++|++.+..|+| ..+|+.+|+.++|+.+...... ...|.......- +
T Consensus 23 id~kelr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~~~v~~~D~~~dhP 102 (370)
T KOG4567|consen 23 IDLKELRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNSKKVDSNDTDEDHP 102 (370)
T ss_pred hhHHHHHHHhhcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccccccccCcccccCC
Confidence 477999999999999 6899999999999865543321 122333322210 0
Q ss_pred -------------CCCcccchhhhccCCcCCCCCCCCCcc-------------------------h--HHHHHHHHHHhh
Q 020189 154 -------------KVTPATKQIDHDLPRTFPGHPWLDTPD-------------------------G--HATLRRVLVGYS 193 (329)
Q Consensus 154 -------------~~~~~~~qI~~Dl~RT~~~~~~f~~~~-------------------------~--~~~L~rVL~ay~ 193 (329)
++++...||++|+.||.|+-.+|+... | .....|||..||
T Consensus 103 ls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyA 182 (370)
T KOG4567|consen 103 LSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYA 182 (370)
T ss_pred CCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHh
Confidence 012345699999999999988775310 1 234578999999
Q ss_pred hcCCCCCccccchHHHHHHHHhhc----------CHHHHHHHHHHHHhhhcccccc----CCCchhhhHHHHHHHHHHHh
Q 020189 194 FRDSDVGYCQGLNYVAALLLLVMK----------TEEDAFWMLAVLLENVLVNDCY----TNNLSGCHVEQRVFKDLLVK 259 (329)
Q Consensus 194 ~~np~igY~QGm~~Iaa~LL~~~~----------~Ee~aF~~l~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~ll~~ 259 (329)
..||.|||+||||.|+|+++.++. .|+|||.||..+|..+ ++.| .++..|++..+..+..++++
T Consensus 183 KLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMsei--rDnf~k~LDdS~~GI~~~Msr~~~~lk~ 260 (370)
T KOG4567|consen 183 KLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEI--RDNFIKTLDDSVGGIHFLMSRLSELLKK 260 (370)
T ss_pred hcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHH--HHHHHHhccccccchHHHHHHHHHHHHH
Confidence 999999999999999999999883 4889999999999876 4666 45556777778899999999
Q ss_pred hcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCc--hHHHHHHHHHHhh
Q 020189 260 QCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGA--KVLFHVALAIFKV 321 (329)
Q Consensus 260 ~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~--~~l~~~alailk~ 321 (329)
++-+||.||++.++.|..|+++|+.++++.+||++.++||||.+|++.. .++..+|.|++-+
T Consensus 261 ~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil 324 (370)
T KOG4567|consen 261 HDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLIL 324 (370)
T ss_pred hhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998865 6688888888776
No 11
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.97 E-value=3.1e-31 Score=260.21 Aligned_cols=216 Identities=33% Similarity=0.578 Sum_probs=195.8
Q ss_pred CCCHHHHHHHHHhCCCCchHHHHHHHhHcchhh------hccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCC
Q 020189 103 LANAITLKKLIRKGIPPVLRPKVWFSLSGAAKK------KSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWL 176 (329)
Q Consensus 103 ~~~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~------~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f 176 (329)
..+.+++...++.|+|.+-|+.+|..++--... ....+.--|+++++++ ++....|..|+.||||+|++|
T Consensus 564 k~d~ed~~~~l~~gvprsrrgeiwtflA~q~~~~~~l~~~kr~~~~p~~~llkqL----te~qhAi~idlgrtfp~h~~~ 639 (948)
T KOG4436|consen 564 KKDMEDLHSALRTGVPRSRRGEIWTFLAEQHSLNHALPDKKRPPDFPYKELLKQL----TEQQHAILIDLGRTFPTHPYF 639 (948)
T ss_pred cccHHHHHHHHHccCchhhhHHHHHHHHHHHHHhccCCcccCCCCCChHHHHHHH----HHHHHHHHHhhccccCCCHHH
Confidence 347899999999999999999999998754222 1122223367787774 567788999999999999999
Q ss_pred CCc--chHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHH
Q 020189 177 DTP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFK 254 (329)
Q Consensus 177 ~~~--~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (329)
+.+ .|+..|+++|.||+..+|++|||||+.++|++||++| +|++||-++-.+|-..+.+.-|.+++..++..++.+.
T Consensus 640 ~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~-~e~~afellk~LM~~r~~r~qy~pdm~~lq~qmyqLs 718 (948)
T KOG4436|consen 640 SDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHM-SEENAFELLKFLMFDRGMRKQYRPDMKKLQIQMYQLS 718 (948)
T ss_pred HhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhc-chhhHHHHHHHHHHHHhhHhhhchHHHHHHHHHHHHH
Confidence 875 5799999999999999999999999999999999999 8999999999999988888899999999999999999
Q ss_pred HHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhhh
Q 020189 255 DLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRF 323 (329)
Q Consensus 255 ~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~~ 323 (329)
.+++.+.|+||+|++++.|+|++|+.+||+|.|+.-+|...+-||+|.++.+|..++|.+|+++|..++
T Consensus 719 rl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq~tevifK~a~~llsv~k 787 (948)
T KOG4436|consen 719 RLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGTEVIFKVALSLLSVHK 787 (948)
T ss_pred HHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhccchhhhhHHHHHHhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999965
No 12
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.97 E-value=2.6e-30 Score=247.86 Aligned_cols=214 Identities=35% Similarity=0.591 Sum_probs=185.9
Q ss_pred CCHHHHHHHHHhCCCCchHHHHHHHhHcchhhhcc-CchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCc--c
Q 020189 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST-VPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--D 180 (329)
Q Consensus 104 ~~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~-~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~--~ 180 (329)
.+..++...+..|||..+|+.+|..+++....... .....|.. ..........++| +|+.||+|.+..|... .
T Consensus 133 ~~~~~l~~~~~~gip~~~r~~~W~l~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~-~d~~Rt~~~~~~f~~~~~~ 208 (397)
T KOG1102|consen 133 RRPLKLSRRVLVGIPDELRGLVWQLLLYAVEESLFDSLDELYRL---QLDEPEPHESEII-RDLSRTFPAHLLFRKRYGV 208 (397)
T ss_pred ccHHHHHHHhhccccHHHHHHHHHHhcccHhhhhhhhHHHHHHH---hhccCCCchhHHH-hhccCcCcchhhhhhhcCc
Confidence 36789999999999999999999999987322221 11122222 1122233445566 9999999999999763 5
Q ss_pred hHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhh
Q 020189 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQ 260 (329)
Q Consensus 181 ~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 260 (329)
+|+.|.+|+.||+.++|++||||||..+|++++.++ +||+|||+++.+|..+. .+.|..++.+++..+..+..+++..
T Consensus 209 ~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~-~ee~af~~lv~l~~~~~-~~~~~~~~~~l~~~~~~~~~l~~~~ 286 (397)
T KOG1102|consen 209 GQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYL-PEEEAFPLLVKLMKNYG-LDLLSPGFSGLQRSFRQLQRLLKEL 286 (397)
T ss_pred ccccccccchhhcccCCCcccccchhhHhhhhhccC-chhhhhhhhhhhhhccc-hhcccccCCchhhhHHHHHHHHHHh
Confidence 799999999999999999999999999999999999 69999999999999987 5666999999999999999999999
Q ss_pred cHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhhh
Q 020189 261 CPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRF 323 (329)
Q Consensus 261 ~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~~ 323 (329)
.|.++.|+...+++..+|+.+|++|+|+..+|++.++|+||+++.+|..+++++++++++.+.
T Consensus 287 ~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~~i~~~~~~~l~~~~~ 349 (397)
T KOG1102|consen 287 IPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGVSILFRFSLALLKHKA 349 (397)
T ss_pred ChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhchHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999844
No 13
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.96 E-value=4.2e-29 Score=238.22 Aligned_cols=208 Identities=27% Similarity=0.462 Sum_probs=183.8
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCcchHHHH
Q 020189 106 AITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATL 185 (329)
Q Consensus 106 ~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~~~~~~L 185 (329)
...+-+..+.|+|+-+|+.+|..|++..... ...|..+-+ +.+.+..+||+.|++|+.......+++.|++.|
T Consensus 345 ~~qI~r~a~vdvpp~~R~~iW~aLL~l~e~~----~a~y~~IDk---~Ts~~tdrqievdiprchQyd~~lsSp~~~r~l 417 (725)
T KOG1093|consen 345 RLQILREAYVDVPPLYRGFIWAALLQLEENH----TAFYTLIDK---GTSHSTDRQIEVDIPRCHQYDELLSSPKGHRKL 417 (725)
T ss_pred HHHHHHHhccCCChhHhHHHHHHHhcCcccc----chhhhhhhc---CCCCcchhhhhcccchhhhcccccCCHHHHHHH
Confidence 3444555578999999999999999886543 345544322 234578999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCccccchHHHHHHHHh-hcCHHHHHHHHHHHHhhhcccccc-CCCchhhhHHHHHHHHHHHhhcHH
Q 020189 186 RRVLVGYSFRDSDVGYCQGLNYVAALLLLV-MKTEEDAFWMLAVLLENVLVNDCY-TNNLSGCHVEQRVFKDLLVKQCPR 263 (329)
Q Consensus 186 ~rVL~ay~~~np~igY~QGm~~Iaa~LL~~-~~~Ee~aF~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~P~ 263 (329)
+|+|+|++...|...|.||+..+|++|+.. +.+|+-||.|+..++-+++ +.+| .++..-++....+|.+++..|+|+
T Consensus 418 rRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kyc-q~fflkdns~vikeyLs~f~~l~AfhDpe 496 (725)
T KOG1093|consen 418 RRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYC-QHFFLKDNSNVIKEYLSMFSQLLAFHDPE 496 (725)
T ss_pred HHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHH-HHHHhhcCchhHHHHHHHHHHHHHhcCHH
Confidence 999999999999999999999999998654 5689999999999999998 4555 447777888999999999999999
Q ss_pred HHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhh
Q 020189 264 IASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKV 321 (329)
Q Consensus 264 L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~ 321 (329)
|++||..+|+.+++|+.+||+|+|+++||.+..+.+||..+..++.+.+.+++|++..
T Consensus 497 L~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~SFplmi~vAil~~ 554 (725)
T KOG1093|consen 497 LLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSSFPLMIGVAILIQ 554 (725)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999977
No 14
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.91 E-value=3.3e-24 Score=198.78 Aligned_cols=219 Identities=21% Similarity=0.415 Sum_probs=165.1
Q ss_pred CCCHHHHHHHH-HhCCCCchHHHHHHHhHcchhhhccCch---------HHHHHHHHHhc-CCCC--------cccchhh
Q 020189 103 LANAITLKKLI-RKGIPPVLRPKVWFSLSGAAKKKSTVPE---------SYYNDLTKAVE-GKVT--------PATKQID 163 (329)
Q Consensus 103 ~~~~~kLk~~i-~~GIP~~~R~~vW~~llg~~~~~~~~~~---------~~y~~l~~~~~-~~~~--------~~~~qI~ 163 (329)
..+.-||++.+ ..||..++|+.||+.|+.......+..+ ..|+++.+.-- .-+. ...-.++
T Consensus 421 iedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysmspeeh~~fwknvq~tvd 500 (781)
T KOG2224|consen 421 IEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSMSPEEHIAFWKNVQFTVD 500 (781)
T ss_pred chhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhheEEEEe
Confidence 34556888888 6899999999999999987655443321 33555543211 1111 1233578
Q ss_pred hccCCcCCCCCCCCCcc--hHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhc-------
Q 020189 164 HDLPRTFPGHPWLDTPD--GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVL------- 234 (329)
Q Consensus 164 ~Dl~RT~~~~~~f~~~~--~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~------- 234 (329)
+||-||.+++++|..++ ..+.++|||..|+.|||.+||.|||+++.|+.|.-..+|.++||||+.+|....
T Consensus 501 kdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapil 580 (781)
T KOG2224|consen 501 KDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPIL 580 (781)
T ss_pred cceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhHH
Confidence 99999999999997754 589999999999999999999988888888877766677777777777765210
Q ss_pred -----------------ccccc--CCCchhhhHHHHHHHHHHHhhcHHHHhhhhhcCCCh--hhhhHHHHHHHccCCCCh
Q 020189 235 -----------------VNDCY--TNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDV--SLVATEWFLCLFSKSLPS 293 (329)
Q Consensus 235 -----------------~~~~~--~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~--~~~~~~WfltlF~~~lp~ 293 (329)
...+| ++.-..+...+..++.+++...|..|+||.++|-+- .+|+-+|++.||.+.||-
T Consensus 581 aevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~e 660 (781)
T KOG2224|consen 581 AEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPE 660 (781)
T ss_pred HhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccH
Confidence 01223 333344555667889999999999999999998443 457999999999999999
Q ss_pred hhHHHHHHHHHhc--CchHHHHHHHHHHhh
Q 020189 294 ETTLRVWDVLFYE--GAKVLFHVALAIFKV 321 (329)
Q Consensus 294 ~~~lriWD~~l~e--G~~~l~~~alailk~ 321 (329)
..++|+|..-++. -.-+.+++++||+.+
T Consensus 661 a~airiweacwa~y~tdyfhlficlaiiai 690 (781)
T KOG2224|consen 661 AEAIRIWEACWAHYLTDYFHLFICLAIIAI 690 (781)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999966 346778889999877
No 15
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.85 E-value=1.8e-21 Score=190.49 Aligned_cols=205 Identities=27% Similarity=0.455 Sum_probs=172.7
Q ss_pred HhCCCCchHHHHHHHhHcchhhhccCch---------HHHHHHHHHhcCCCC----------cccchhhhccCCcCCCCC
Q 020189 114 RKGIPPVLRPKVWFSLSGAAKKKSTVPE---------SYYNDLTKAVEGKVT----------PATKQIDHDLPRTFPGHP 174 (329)
Q Consensus 114 ~~GIP~~~R~~vW~~llg~~~~~~~~~~---------~~y~~l~~~~~~~~~----------~~~~qI~~Dl~RT~~~~~ 174 (329)
..|+-+.+|+.+|+.+.+......+..+ + |.....+...... .....|.+|+.||.+.+.
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~qW~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~ 253 (488)
T KOG2197|consen 175 SGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKLTDE-YFRLKLQWSSTSPEQSPESEGYLERKSRIEKDVGRTDRSLE 253 (488)
T ss_pred ccccccchhhhhhhhhhcccCccccccccccccccccc-Hhhhhhhheeccccccccccchhhhhhhhhhhccccchhhh
Confidence 4567679999999999988766554322 2 2233222221111 223679999999999999
Q ss_pred CCCCcch--HHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHH
Q 020189 175 WLDTPDG--HATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRV 252 (329)
Q Consensus 175 ~f~~~~~--~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 252 (329)
++..+.. ...|..||.+|+.+++++||||||+++.++++.++++|.+|||||+.+|++. ..-|..+..+++.....
T Consensus 254 ~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~--~~nF~~d~~~~~~Ql~~ 331 (488)
T KOG2197|consen 254 FYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRL--RHNFRIDQSGMQTQLAQ 331 (488)
T ss_pred hhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHH--hhcCccccccHHHHhhh
Confidence 9987766 9999999999999999999999999999999999999999999999999985 45677777889998889
Q ss_pred HHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhc--CchHHHHHHHHHHhh
Q 020189 253 FKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYE--GAKVLFHVALAIFKV 321 (329)
Q Consensus 253 ~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~e--G~~~l~~~alailk~ 321 (329)
+..+++..+|.+++||+..+.+-..++++|++.+|-+.+.++.++++|.+++.. ...+.+.++.|++..
T Consensus 332 ~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~~f~~~~~~~~l~~ 402 (488)
T KOG2197|consen 332 LSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSPHFHLYVAPAILNK 402 (488)
T ss_pred hhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccchHHHHHHHhhhhc
Confidence 999999999999999999999999999999999999999999999999999965 337788899998874
No 16
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.85 E-value=4.8e-21 Score=188.89 Aligned_cols=219 Identities=25% Similarity=0.339 Sum_probs=189.7
Q ss_pred CCHHHHHHHHHhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCC-cccchhhhccCCcCCCCCCCCCcc--
Q 020189 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVT-PATKQIDHDLPRTFPGHPWLDTPD-- 180 (329)
Q Consensus 104 ~~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~-~~~~qI~~Dl~RT~~~~~~f~~~~-- 180 (329)
.+..+|+.+|.+|||+..|-.+|..++.........-...|.++........+ ...-.|..|++||.|.|.+|+...
T Consensus 172 ~s~~~l~e~Ve~~~p~~frli~~qlLssatd~~q~~I~e~~sdl~~~s~~~Ek~~~~~~Irrdi~~~~~eh~~fke~~s~ 251 (948)
T KOG4436|consen 172 KSLHKLKELVEGGIPMHFRLIRWQLLSSATDREQALIFEDYSDLAPCSSQQEKELHIGIIRRDIERTYPEHYFFKEQSST 251 (948)
T ss_pred hchhhhHHHHhcCCchHHHHHHHHHhcccccchhhHHHHHHHHHhhhcchhhhhHHHHHHHHHhhccCcceeeeccCccC
Confidence 46789999999999999999999999987654321112235555444222111 123389999999999999997632
Q ss_pred -------hHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHH
Q 020189 181 -------GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVF 253 (329)
Q Consensus 181 -------~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 253 (329)
+++.|+++.++|+...-++|||||-+++++.+++.| ++|.+|.+++.++..+..+..+.+.+..+......+
T Consensus 252 ~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~-~~E~assv~~~lm~~~rl~~l~kpe~~~l~~~~~q~ 330 (948)
T KOG4436|consen 252 VCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQM-PVEEASSVKVQLMILYRLRELSKPEMEPLGLCMFQL 330 (948)
T ss_pred CcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcC-cHHHHHHHHHHHHHhhcccccCCcccchhHHHHHhh
Confidence 489999999999999999999999999999999999 799999999999999998999999999999899999
Q ss_pred HHHHHhhcH-HHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHH-hhhh
Q 020189 254 KDLLVKQCP-RIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIF-KVRF 323 (329)
Q Consensus 254 ~~ll~~~~P-~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alail-k~~~ 323 (329)
+...+...| +++.|+.+.+++.++|...||++.|...+|+...-|+.|+|.++|-...|++.+|++ ..++
T Consensus 331 e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~egllk~fr~~ia~~~~~~d 402 (948)
T KOG4436|consen 331 ECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEGLLKRFRDSIAYLHQLRD 402 (948)
T ss_pred cccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhccccccccccccHHHHHhhhHHHHHHHhh
Confidence 999999999 999999999999999999999999999999999999999999999999999999999 3344
No 17
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.84 E-value=1.7e-20 Score=169.91 Aligned_cols=211 Identities=18% Similarity=0.261 Sum_probs=159.5
Q ss_pred CHHHHHHHHH--hC-CCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCC---CCC
Q 020189 105 NAITLKKLIR--KG-IPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPW---LDT 178 (329)
Q Consensus 105 ~~~kLk~~i~--~G-IP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~---f~~ 178 (329)
+.+.|+.+-. .| +-+++|+.||..|+|..-.... ...+.+..+ .+++..|...|++|++..-+. +..
T Consensus 47 dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~--~~~~~~~~q-----~hkd~nQV~LDv~RSl~rfppg~p~~~ 119 (395)
T KOG2595|consen 47 DVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLD--ATSTLTPVQ-----KHKDYNQVILDVERSLGRFPPGIPKEL 119 (395)
T ss_pred cHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCc--ccccCChhh-----hCcccceEEEehhhhhccCCCCCCHHH
Confidence 4455555542 22 2568999999999997654432 112222222 367899999999999865542 111
Q ss_pred c-chHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHH
Q 020189 179 P-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLL 257 (329)
Q Consensus 179 ~-~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll 257 (329)
+ .-|+.|..++..-...+|+..|.||.++||..||+++ .|.+|+-++..+....+ ++|..+++.+.......+..++
T Consensus 120 R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~-gE~~Al~l~E~L~~~~l-rdfM~~Tld~t~~qL~~i~~iI 197 (395)
T KOG2595|consen 120 RLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVV-GELEALSLMEELSTLHL-RDFMLPTLDFTVRQLRLISPII 197 (395)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhh-hhHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2355666655555567899999999999999999999 79999999999987654 8999999999999999999999
Q ss_pred HhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCC-ChhhHHHHHHHHHhcCch--HHHHHHHHHHhhhhhh
Q 020189 258 VKQCPRIASHLEALDFDVSLVATEWFLCLFSKSL-PSETTLRVWDVLFYEGAK--VLFHVALAIFKVRFLL 325 (329)
Q Consensus 258 ~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~l-p~~~~lriWD~~l~eG~~--~l~~~alailk~~~il 325 (329)
+..+|+||+.|++-.+. .+|+.+|.+|+|+|.+ ++..++|++|+|++..+= +.+..++.+....+|+
T Consensus 198 k~~nP~Ly~~l~~aevg-tlFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl~piyv~A~vvL~r~~eIl 267 (395)
T KOG2595|consen 198 KEVNPELYQFLQSAEVG-TLFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPLLPIYVYAAVVLYRRSEIL 267 (395)
T ss_pred hhcChHHHHHHHhhccc-ceehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcchhHHHHHHHhhhhHHHHH
Confidence 99999999999998886 5689999999999999 589999999999988773 3333333333334444
No 18
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.1e-19 Score=170.90 Aligned_cols=165 Identities=28% Similarity=0.496 Sum_probs=127.5
Q ss_pred cccchhhhccCCcCCCC-CCCCCcchHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhc------------------
Q 020189 157 PATKQIDHDLPRTFPGH-PWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK------------------ 217 (329)
Q Consensus 157 ~~~~qI~~Dl~RT~~~~-~~f~~~~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~------------------ 217 (329)
+..+.|+.|+.||||++ .+|+++.-+..|++||..|+..+|.+||-|||+.+.|+++++..
T Consensus 103 EL~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~ 182 (625)
T KOG1091|consen 103 ELEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLG 182 (625)
T ss_pred HHHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcC
Confidence 35679999999999999 89999999999999999999999999999999999999988751
Q ss_pred -CHHH-----------HH--HHHHHHHhh--hc--------------------cccccCCCchhhhHHHHHHHHHHHhhc
Q 020189 218 -TEED-----------AF--WMLAVLLEN--VL--------------------VNDCYTNNLSGCHVEQRVFKDLLVKQC 261 (329)
Q Consensus 218 -~Ee~-----------aF--~~l~~l~~~--~~--------------------~~~~~~~~~~~~~~~~~~~~~ll~~~~ 261 (329)
.|.+ ++ -++..+|.. +. +-+-+.++.+.+......+..++.+.+
T Consensus 183 f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D 262 (625)
T KOG1091|consen 183 FEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVD 262 (625)
T ss_pred cchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhcc
Confidence 1222 22 122223211 00 001112334445566678899999999
Q ss_pred HHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHH-HHHhcCchHHH--HHHHHHHhh
Q 020189 262 PRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWD-VLFYEGAKVLF--HVALAIFKV 321 (329)
Q Consensus 262 P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD-~~l~eG~~~l~--~~alailk~ 321 (329)
+.||.||.+.||.|..|..+|.-.||.+.||+..++-||| +.+..++...+ .+++++|-.
T Consensus 263 ~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~ 325 (625)
T KOG1091|consen 263 KSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLY 325 (625)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 77788875543 444444443
No 19
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.2e-12 Score=117.34 Aligned_cols=215 Identities=28% Similarity=0.375 Sum_probs=157.0
Q ss_pred CHHHHHHHHHhCC---CCchHHHHHHHhHcchhhhccCc-hHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCcc
Q 020189 105 NAITLKKLIRKGI---PPVLRPKVWFSLSGAAKKKSTVP-ESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180 (329)
Q Consensus 105 ~~~kLk~~i~~GI---P~~~R~~vW~~llg~~~~~~~~~-~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~~ 180 (329)
...+||.+.|.|. .+.+|+.|++.|..-.+-.-..| ...|.++.-..-++.+..---+..=+.-|-- -.+.-+..
T Consensus 31 elqelkqlarqgywaqshalrgkvyqrlirdipcrtvtpdasvysdivgkivgkhsssclplpefvdntqv-psyclnar 109 (559)
T KOG2801|consen 31 ELQELKQLARQGYWAQSHALRGKVYQRLIRDIPCRTVTPDASVYSDIVGKIVGKHSSSCLPLPEFVDNTQV-PSYCLNAR 109 (559)
T ss_pred hHHHHHHHHhcchHHhhhhhhhHHHHHHHhcCCccccCCchhHHHHHHHHHhccCCcccccchhhcccCcC-chhhhcCc
Confidence 4578999999998 46799999999986543322222 3467777655443322211111111111110 01122345
Q ss_pred hHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhcc-ccccCCCchhhhHHHHHHHHHHHh
Q 020189 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLV-NDCYTNNLSGCHVEQRVFKDLLVK 259 (329)
Q Consensus 181 ~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~ 259 (329)
|....+.||.+.++..|++.+|+.++.++|+||.+.-+|.++|---+.++.---+ +.....++..+...+..|..++.+
T Consensus 110 gegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrlidqsflafesscmtfgdlvnk 189 (559)
T KOG2801|consen 110 GEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSCMTFGDLVNK 189 (559)
T ss_pred CchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhhhhhHHHHHHhhhhhHHHHHHH
Confidence 7788999999999999999999999999999999988999999877766532111 334455556677778899999999
Q ss_pred hcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhh
Q 020189 260 QCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKV 321 (329)
Q Consensus 260 ~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~ 321 (329)
+....++.+-...-+.......|--.+| ..+|+-..-|++|+|+.||.++++++|+||||.
T Consensus 190 ycqaahklmvavsedvlqvyadwqrwlf-gelplcyfarvfdvflvegykvlyrvalailkf 250 (559)
T KOG2801|consen 190 YCQAAHKLMVAVSEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEGYKVLYRVALAILKF 250 (559)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecchHHHHHHHHHHHHH
Confidence 9999888887766666677788888888 589999999999999999999999999999997
No 20
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.45 E-value=5.4e-13 Score=125.13 Aligned_cols=195 Identities=20% Similarity=0.369 Sum_probs=142.0
Q ss_pred CCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCc---chHHHHHHHHHHh
Q 020189 116 GIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP---DGHATLRRVLVGY 192 (329)
Q Consensus 116 GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~---~~~~~L~rVL~ay 192 (329)
|=|... |+.++|+..+.. +-..+..+.. -+...+|.+|..|-......= .+ .....|..++.-|
T Consensus 36 G~~~~~----W~~~L~V~~K~d--~l~~wd~iyd------Lp~Q~~lr~DC~~~~d~l~n~-ee~~v~vv~dlES~iTfY 102 (669)
T KOG3636|consen 36 GNDKSD----WMRLLGVSMKPN--PLDDWDQIYD------LPNQCALRNDCRKLADGLKNK-EEDKVPVVSDLESFITFY 102 (669)
T ss_pred CCCHHH----HHHHhcccCCCC--chhhHHHHhC------CchhhHHHHHHHHHHhhcCCc-hhhccchhHhhhhHhhhh
Confidence 556555 999999875543 2334555433 355678888886654222111 11 1245788888888
Q ss_pred hhcCCCCCccccchHHHH--HHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHHhhhhh
Q 020189 193 SFRDSDVGYCQGLNYVAA--LLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEA 270 (329)
Q Consensus 193 ~~~np~igY~QGm~~Iaa--~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~ 270 (329)
+. +.++.|......|.- +|++.-.+..+.|-||.+++++|.|+++-..+.+ +..|+-||+.|+|+|++||+.
T Consensus 103 CK-~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~~-----Fh~FRLLlqYHdPelc~~Ldt 176 (669)
T KOG3636|consen 103 CK-KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQI-----FHLFRLLLQYHDPELCNHLDT 176 (669)
T ss_pred hh-ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCcc-----chHHHHHHHhcCHHHhhhhhc
Confidence 75 345677777766654 3333333789999999999999988877765533 568999999999999999999
Q ss_pred cCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHH-HHHHHHHhh--hhhhccCC
Q 020189 271 LDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLF-HVALAIFKV--RFLLTLNS 329 (329)
Q Consensus 271 ~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~-~~alailk~--~~il~l~s 329 (329)
..++|.+|+..||-++|+.+.+.+.+..+||.|+-.+.+++. ++++.||-- .+|++++|
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~s 238 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKS 238 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhcc
Confidence 999999999999999999999999999999999999998864 444444432 34777654
No 21
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=97.09 E-value=1.9e-05 Score=75.94 Aligned_cols=187 Identities=21% Similarity=0.281 Sum_probs=119.4
Q ss_pred HHHHHHHHhCCCCchHHHHHHHhHcchhhhcc------Cc---hHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCC
Q 020189 107 ITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST------VP---ESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLD 177 (329)
Q Consensus 107 ~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~------~~---~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~ 177 (329)
.-+..-++.|+-...|+.+|+...+-...... +. ...|+..+-... ......|++|+.|.-.+..+|+
T Consensus 549 ~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~---~~~~~~~~kd~e~~~~~~~~fs 625 (813)
T KOG1648|consen 549 RVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLF---RANLHRIDKDVERCDRNLMFFS 625 (813)
T ss_pred HHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHH---hhheeeecchhhhCcchheeec
Confidence 44555668999999999999998764322111 11 123544332221 2346789999999998888998
Q ss_pred CcchHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHH
Q 020189 178 TPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLL 257 (329)
Q Consensus 178 ~~~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll 257 (329)
+.+..+. +++...|...|-+-||.|||.++.++++..+++|.-.--|+.-+|-+- ++.|. ..++....+-.++ ++
T Consensus 626 ~~~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q--~~~~~-q~~~~~~~l~~~r-~~ 700 (813)
T KOG1648|consen 626 NKDNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQ--RGKFP-QRPGMSKCLLNLR-LI 700 (813)
T ss_pred CCcchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHh--cccCC-CCCCccccccccc-ch
Confidence 8888877 889999999999999999999999999988755443332332222211 12221 2222222211222 34
Q ss_pred HhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhc
Q 020189 258 VKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYE 306 (329)
Q Consensus 258 ~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~e 306 (329)
+-.+|-....=.. ....++||+.-|-+.++.+....+|......
T Consensus 701 ~v~~~l~s~id~~-----qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~ 744 (813)
T KOG1648|consen 701 QVVDPLISDIDYA-----QALSFRWFLLDFKRELSYECTYKVWEVIWAA 744 (813)
T ss_pred hhhcchhcchhhh-----hhcceeeeccCcccccCCCCcceeeEeeccc
Confidence 4444522221111 2235899999999999999999888887754
No 22
>PF14961 BROMI: Broad-minded protein
Probab=96.11 E-value=0.043 Score=58.77 Aligned_cols=134 Identities=18% Similarity=0.225 Sum_probs=95.9
Q ss_pred HHHHHhhhcCCCCCccccchHHHHHHHHhh-cCHHHHHHHHHHHHhhh----cc--ccccCCCc------hh----hhHH
Q 020189 187 RVLVGYSFRDSDVGYCQGLNYVAALLLLVM-KTEEDAFWMLAVLLENV----LV--NDCYTNNL------SG----CHVE 249 (329)
Q Consensus 187 rVL~ay~~~np~igY~QGm~~Iaa~LL~~~-~~Ee~aF~~l~~l~~~~----~~--~~~~~~~~------~~----~~~~ 249 (329)
+++.-|..+++.-+| .|....|+.++++| .+-+.+.-.+..+-... ++ +-..+... .| .-..
T Consensus 1088 ~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~~~~~ 1166 (1296)
T PF14961_consen 1088 HILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPVYFCS 1166 (1296)
T ss_pred HHHhhhhcccCCCCC-CCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCchhhhH
Confidence 344444444444344 68888888777776 45666666655554331 11 11111111 11 1224
Q ss_pred HHHHHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhh
Q 020189 250 QRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKV 321 (329)
Q Consensus 250 ~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~ 321 (329)
+..++.+++...|.++.-|.-.|..++..+.+|+-.||=+.+++..+..-.=+-+..|+.+-..+++|+||.
T Consensus 1167 ~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~dyqvY~~VailkH 1238 (1296)
T PF14961_consen 1167 CHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPDYQVYICVAILKH 1238 (1296)
T ss_pred HHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCccceeehhHHHHHH
Confidence 568899999999999999999999999999999999999999998888777777788999988999999987
No 23
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=95.32 E-value=0.0054 Score=58.50 Aligned_cols=34 Identities=35% Similarity=0.638 Sum_probs=31.0
Q ss_pred CCccccchHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 020189 199 VGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLEN 232 (329)
Q Consensus 199 igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~ 232 (329)
+|..|||++++|++|.-..+|.++||||+.+|.+
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmqn 599 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQN 599 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhcc
Confidence 6788999999999888777999999999999986
No 24
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=84.02 E-value=0.18 Score=49.01 Aligned_cols=129 Identities=19% Similarity=0.260 Sum_probs=88.2
Q ss_pred hhhhccCCcCCCCCCCCCcchHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccC
Q 020189 161 QIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240 (329)
Q Consensus 161 qI~~Dl~RT~~~~~~f~~~~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~ 240 (329)
.|+.|+..|+. +..+.++..=. |.+|.-+|+++||| +..+.+ ...+...
T Consensus 2 ~~~~~~~~~~~----~~~~~~~~~~~--l~~~~~~~~~~~~~--~~~~~~-----------------------~~~~~~~ 50 (397)
T KOG1102|consen 2 EIDSPVRLTFR----LRPRYGQKQNN--LAAYEPYNPEVGYC--VLHITS-----------------------KSDGFQS 50 (397)
T ss_pred CCCcccccccc----CCCCccccccc--ccCCCccccccccc--hhhhhh-----------------------ccccccc
Confidence 35667777765 33333311111 88999999999999 544444 1134444
Q ss_pred CCchhhhHHHHHHHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHh
Q 020189 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFK 320 (329)
Q Consensus 241 ~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk 320 (329)
.+...........+.......+.-..|+...+ ........|..-.|.+......+.++||.+..+|...+..+.-..++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (397)
T KOG1102|consen 51 SNERKLTELRDSPESIPDLSQSKRPGHVDSSE-PTNELYPKSDERIFKDKPLLSLTLDLWDVKLLEGEQELTALSSSWLK 129 (397)
T ss_pred CCcccccccccCcccccccccccccccccccc-cccccccccccccccccccccccchhHHHHhhhhHHHHHHHHHHhhh
Confidence 44444444333334444444555666777776 66677888999999999999999999999999999999888888777
Q ss_pred h
Q 020189 321 V 321 (329)
Q Consensus 321 ~ 321 (329)
+
T Consensus 130 ~ 130 (397)
T KOG1102|consen 130 V 130 (397)
T ss_pred h
Confidence 5
No 25
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=68.23 E-value=6.6 Score=26.50 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=34.6
Q ss_pred HHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCC
Q 020189 253 FKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLP 292 (329)
Q Consensus 253 ~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp 292 (329)
|.++--++.|+.-..|++.||+.++-..+-|+++|+++..
T Consensus 6 FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~VM~ 45 (56)
T PF10815_consen 6 FMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTKVMN 45 (56)
T ss_pred HHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHHHHH
Confidence 5566678999999999999999999999999999987653
No 26
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=31.85 E-value=16 Score=36.67 Aligned_cols=30 Identities=40% Similarity=0.553 Sum_probs=23.8
Q ss_pred HHHHHHHhCCCCchHHHHHHHhHcchhhhc
Q 020189 108 TLKKLIRKGIPPVLRPKVWFSLSGAAKKKS 137 (329)
Q Consensus 108 kLk~~i~~GIP~~~R~~vW~~llg~~~~~~ 137 (329)
-++....+||++.+|+.+|..|+|......
T Consensus 69 ~l~~i~~~gi~psir~evw~fll~~y~~~~ 98 (488)
T KOG2197|consen 69 LLKLIILGGIDPSIRGEVWEFLLGCYDLDS 98 (488)
T ss_pred hheeeecCCCCCcccchhHHHHhcccCCCC
Confidence 344455799999999999999999876433
No 27
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=29.90 E-value=41 Score=19.24 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=10.6
Q ss_pred CCccccchHHHHHHH
Q 020189 199 VGYCQGLNYVAALLL 213 (329)
Q Consensus 199 igY~QGm~~Iaa~LL 213 (329)
-||.||+++..--.|
T Consensus 3 sgyiqgipdflkgyl 17 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYL 17 (31)
T ss_pred cccccccHHHHHHHH
Confidence 489999987654433
No 28
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=26.62 E-value=21 Score=22.92 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=19.3
Q ss_pred CHHHHHHHH-HhCCCCchHHHHHHH
Q 020189 105 NAITLKKLI-RKGIPPVLRPKVWFS 128 (329)
Q Consensus 105 ~~~kLk~~i-~~GIP~~~R~~vW~~ 128 (329)
..++||+++ ..+||+..|..++..
T Consensus 19 ~~k~lkk~~~e~kiP~~~R~~~pll 43 (47)
T TIGR02433 19 GSKKLKKLFIDAKVPPWLRDRIPLL 43 (47)
T ss_pred CCchHHHHHHHcCCCHHHHcCccEE
Confidence 357899999 689999999886644
No 29
>PF13041 PPR_2: PPR repeat family
Probab=24.69 E-value=91 Score=19.94 Aligned_cols=26 Identities=0% Similarity=0.011 Sum_probs=20.0
Q ss_pred HHHhhhhhcCCChhhhhHHHHHHHcc
Q 020189 263 RIASHLEALDFDVSLVATEWFLCLFS 288 (329)
Q Consensus 263 ~L~~hl~~~~i~~~~~~~~WfltlF~ 288 (329)
++++.+.+.|+.|..+++.-++..|.
T Consensus 24 ~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 24 KLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 56777888888888888877776554
No 30
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=21.19 E-value=18 Score=27.41 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=25.8
Q ss_pred HhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHH
Q 020189 114 RKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKA 150 (329)
Q Consensus 114 ~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~ 150 (329)
++-.|+.+|...|.-++-+.-...+.....|+.|.+-
T Consensus 38 kk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lrel 74 (91)
T PF12829_consen 38 KKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLREL 74 (91)
T ss_pred cccCCchhccccceEeEEEECCChHHHHHHHHHHHHH
Confidence 3567999999999999876544333334567777653
Done!