Query 020189
Match_columns 329
No_of_seqs 259 out of 1462
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 13:08:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qye_A TBC1 domain family memb 100.0 4.1E-51 1.4E-55 384.6 22.9 220 104-328 47-276 (331)
2 2qq8_A TBC1 domain family memb 100.0 1.7E-51 5.7E-56 387.6 18.2 220 105-328 37-281 (334)
3 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 2.3E-51 8E-56 382.9 18.5 216 105-327 22-241 (310)
4 2qfz_A TBC1 domain family memb 100.0 1.6E-48 5.3E-53 369.0 19.4 219 105-326 39-298 (345)
5 1fkm_A Protein (GYP1P), ORF YO 100.0 8.3E-48 2.8E-52 369.8 21.1 201 105-307 22-261 (396)
6 4hl4_A TBC1 domain family memb 100.0 2.4E-46 8.1E-51 346.3 15.3 214 104-327 32-255 (292)
7 3qwl_A TBC1 domain family memb 100.0 2.6E-36 9E-41 277.9 7.3 207 103-328 37-255 (294)
8 1dxs_A P53-like transcription 30.7 41 0.0014 23.7 3.1 25 110-134 42-66 (80)
9 1erd_A Pheromone ER-2; NMR {Eu 21.3 30 0.001 20.1 0.8 16 195-210 13-28 (40)
10 1jhd_A Sulfate adenylyltransfe 13.5 1.1E+02 0.0037 28.5 3.0 29 104-132 359-390 (396)
No 1
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=4.1e-51 Score=384.62 Aligned_cols=220 Identities=32% Similarity=0.566 Sum_probs=200.5
Q ss_pred CCHHHHHHHHHhCCCCchHHHHHHHhHcchhhhccC------chHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCC
Q 020189 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTV------PESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLD 177 (329)
Q Consensus 104 ~~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~~------~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~ 177 (329)
.+.++|++++++|||+.+|+.||+.|+|+.....+. ..+.|.++.+. ..+..++|++|++||+|++++|.
T Consensus 47 ~~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~Y~~l~~~----~~~~~~~I~~Dv~Rt~~~~~~f~ 122 (331)
T 3qye_A 47 FDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQ----LTSQQHAILIDLGRTFPTHPYFS 122 (331)
T ss_dssp CCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCSSSCCCCCCHHHHTTS----CCTTHHHHHHHHTTSSTTSTTTC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhcchhhhhhchHHHHHHHHh----cCCchhHHHHhhcccCCCchhhc
Confidence 478999999999999999999999999987643221 23568877654 34567899999999999999998
Q ss_pred Cc--chHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHH
Q 020189 178 TP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKD 255 (329)
Q Consensus 178 ~~--~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (329)
.+ .+++.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||+++++++.++++|.+++++++..+.+++.
T Consensus 123 ~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (331)
T 3qye_A 123 AQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSR 201 (331)
T ss_dssp STTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHH
Confidence 76 6899999999999999999999999999999999999 89999999999999987789999999999999999999
Q ss_pred HHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhhh--hhccC
Q 020189 256 LLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRF--LLTLN 328 (329)
Q Consensus 256 ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~~--il~l~ 328 (329)
+++.++|+|++||++.|+++.+|+++||+|+|++.+|++.++||||+|+++|.++++++|+|||+.++ |+.++
T Consensus 202 ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~ 276 (331)
T 3qye_A 202 LLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHE 276 (331)
T ss_dssp HHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999943 66543
No 2
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-51 Score=387.58 Aligned_cols=220 Identities=26% Similarity=0.467 Sum_probs=196.2
Q ss_pred CHHHHHHHHHhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcC----------------------CCCcccchh
Q 020189 105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEG----------------------KVTPATKQI 162 (329)
Q Consensus 105 ~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~----------------------~~~~~~~qI 162 (329)
+.++||+++++|||+++|+.||+.++|+... ...+.|+.+++.... ...+..+||
T Consensus 37 ~~~~lr~l~~~GIP~~lR~~vW~~llg~~~~---~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~I 113 (334)
T 2qq8_A 37 CSRKVRDLWWQGIPPSVRGKVWSLAIGNELN---ITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELI 113 (334)
T ss_dssp CCHHHHHHHHTCCCHHHHHHHHHHHHCCTTC---CCHHHHHHHHHHHHHHC----------------------CCHHHHH
T ss_pred ChHHHHHHHHCCCCHHHHHHHHHHHhCCccc---cCHHHHHHHHHHHHHHHHHhccccccCcccccccccccchhHHHHH
Confidence 6789999999999999999999999998532 234567766543210 013456899
Q ss_pred hhccCCcCCCCCCCCCc-chHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCC
Q 020189 163 DHDLPRTFPGHPWLDTP-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTN 241 (329)
Q Consensus 163 ~~Dl~RT~~~~~~f~~~-~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~ 241 (329)
++||+||+|++++|+.+ .+++.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||+++|+++.+.++|..
T Consensus 114 ~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~~~~~~ 192 (334)
T 2qq8_A 114 KLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQMAFFRV 192 (334)
T ss_dssp HHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHHHHHSS
T ss_pred HHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHHhccCC
Confidence 99999999999999875 5799999999999999999999999999999999999 899999999999998876789999
Q ss_pred CchhhhHHHHHHHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhh
Q 020189 242 NLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKV 321 (329)
Q Consensus 242 ~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~ 321 (329)
+.++++..+.+++.+++.++|+|++||++.|+++.+|+++||+|+|++.+|++.++||||+|+++|.++++++|+|||+.
T Consensus 193 ~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~ 272 (334)
T 2qq8_A 193 DHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKL 272 (334)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh--hhccC
Q 020189 322 RF--LLTLN 328 (329)
Q Consensus 322 ~~--il~l~ 328 (329)
.+ |+.++
T Consensus 273 ~~~~Ll~~d 281 (334)
T 2qq8_A 273 FEDILTKMD 281 (334)
T ss_dssp THHHHHTCC
T ss_pred HHHHHhcCC
Confidence 43 66543
No 3
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-51 Score=382.94 Aligned_cols=216 Identities=34% Similarity=0.644 Sum_probs=197.4
Q ss_pred CHHHHHHHHHhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCc--chH
Q 020189 105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--DGH 182 (329)
Q Consensus 105 ~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~--~~~ 182 (329)
++++||+++++|||+.+|+.||+.++|+...... .+.|.++.+ ..++..++|++|++||+|++++|..+ .++
T Consensus 22 ~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~~~~--~~~Y~~l~~----~~~~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~ 95 (310)
T 3hzj_A 22 RPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAM--LDRYRILIT----KDSAQESVITRDIHRTFPAHDYFKDTGGDGQ 95 (310)
T ss_dssp CCTTHHHHHHHCCCGGGHHHHHHHHTTCCCCHHH--HHHHHHHTT----SCCTTHHHHHHHHTTSSTTSTTTSSTTSHHH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHCCCcchhH--HHHHHHHHh----ccCCcHHHHHHHHHhhCCCchhhcCCCchhH
Confidence 6789999999999999999999999998653221 245766543 34677899999999999999999876 579
Q ss_pred HHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcH
Q 020189 183 ATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCP 262 (329)
Q Consensus 183 ~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P 262 (329)
+.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||+++|+++.++++|.+++++++..+.+++.+++.++|
T Consensus 96 ~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p 174 (310)
T 3hzj_A 96 ESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLP 174 (310)
T ss_dssp HHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999999999999999 899999999999998877999999999999999999999999999
Q ss_pred HHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhh--hhhcc
Q 020189 263 RIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVR--FLLTL 327 (329)
Q Consensus 263 ~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~--~il~l 327 (329)
+|++||++.|+++.+|+++||+|+|++.+|++.++||||+|+++|.++++++|+|+|+.. +|+.+
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~ 241 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQA 241 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTC
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999993 36554
No 4
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=1.6e-48 Score=369.01 Aligned_cols=219 Identities=24% Similarity=0.424 Sum_probs=193.4
Q ss_pred CHHHHHHHHHhCCCCchHHHHHHHhHcchhhhcc-------CchHHHHHHHHHhcC-----CCCcccchhhhccCCcCCC
Q 020189 105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST-------VPESYYNDLTKAVEG-----KVTPATKQIDHDLPRTFPG 172 (329)
Q Consensus 105 ~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~-------~~~~~y~~l~~~~~~-----~~~~~~~qI~~Dl~RT~~~ 172 (329)
+.++||+++++|||+.+|+.||+.++|+.+.... .....|.++.+.... ...+..+||++||+||+|+
T Consensus 39 d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~I~~Dv~RT~p~ 118 (345)
T 2qfz_A 39 DLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSPE 118 (345)
T ss_dssp CHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHGGGCSCH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhCcccCCc
Confidence 7799999999999999999999999998532211 113568888776432 1235678999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhc------------------------CHHHHHHHHHH
Q 020189 173 HPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK------------------------TEEDAFWMLAV 228 (329)
Q Consensus 173 ~~~f~~~~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~------------------------~Ee~aF~~l~~ 228 (329)
++|+.+.+++.|+|||.+|+.+||++|||||||+|||+|++++. +|++|||||++
T Consensus 119 -~~F~~~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~ 197 (345)
T 2qfz_A 119 -ALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSK 197 (345)
T ss_dssp -HHHTSHHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -cccCCchHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998763 29999999999
Q ss_pred HHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCc
Q 020189 229 LLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGA 308 (329)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~ 308 (329)
+|+++ +++|..++++++..+.+++.+++.++|+|++||++.|+++.+|+++||+|+|++++|++.++||||+|+++|.
T Consensus 198 lm~~~--~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~ 275 (345)
T 2qfz_A 198 LLDGI--QDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPD 275 (345)
T ss_dssp HHHTS--GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTT
T ss_pred HHHcc--ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCC
Confidence 99986 6899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred h---HHHHHHHHHHhhh--hhhc
Q 020189 309 K---VLFHVALAIFKVR--FLLT 326 (329)
Q Consensus 309 ~---~l~~~alailk~~--~il~ 326 (329)
+ +++++|+|+|... +|+.
T Consensus 276 ~~~~~~~~v~~AiL~~~~~~ll~ 298 (345)
T 2qfz_A 276 GFSHFHLYVCAAFLVRWRKEILE 298 (345)
T ss_dssp TTTTHHHHHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHh
Confidence 6 7899999999883 3553
No 5
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=8.3e-48 Score=369.80 Aligned_cols=201 Identities=27% Similarity=0.481 Sum_probs=181.2
Q ss_pred CHHHHHHHHHhCCCCchHHHHHHHhHcchhhhcc-------CchHHHHHHHHHhcC----CCCcccchhhhccCCcCCCC
Q 020189 105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST-------VPESYYNDLTKAVEG----KVTPATKQIDHDLPRTFPGH 173 (329)
Q Consensus 105 ~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~-------~~~~~y~~l~~~~~~----~~~~~~~qI~~Dl~RT~~~~ 173 (329)
+.++||+++++|||+.+|+.||+.|+|+.+.... .....|.+++++... .+.+..+||++||+||+|++
T Consensus 22 d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~qI~~Dv~RT~p~~ 101 (396)
T 1fkm_A 22 NQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHI 101 (396)
T ss_dssp CHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSSTTS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHhhhhCCCc
Confidence 7899999999999999999999999998643221 113568888876432 23456789999999999999
Q ss_pred CCCCCcchHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhc---------------------C-------HHHHHHH
Q 020189 174 PWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK---------------------T-------EEDAFWM 225 (329)
Q Consensus 174 ~~f~~~~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~---------------------~-------Ee~aF~~ 225 (329)
++|+.+.+++.|+|||.+|+.+||++|||||||+|||+||+++. + |++||||
T Consensus 102 ~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~ 181 (396)
T 1fkm_A 102 PLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWC 181 (396)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHH
T ss_pred ccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999998751 2 9999999
Q ss_pred HHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHh
Q 020189 226 LAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFY 305 (329)
Q Consensus 226 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~ 305 (329)
|+++|+++ +++|.+++++++..+.+++.+|+.++|+|++||+++|+++.+|+++||+|+|++.+|++.++||||+||+
T Consensus 182 f~~lm~~~--~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~ 259 (396)
T 1fkm_A 182 LTKLLEQI--TDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLS 259 (396)
T ss_dssp HHHHHGGG--GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 99999985 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 020189 306 EG 307 (329)
Q Consensus 306 eG 307 (329)
+|
T Consensus 260 eg 261 (396)
T 1fkm_A 260 ET 261 (396)
T ss_dssp HH
T ss_pred CC
Confidence 98
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=2.4e-46 Score=346.26 Aligned_cols=214 Identities=16% Similarity=0.238 Sum_probs=188.3
Q ss_pred CCHHHHHHHHHhC---CCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCc-
Q 020189 104 ANAITLKKLIRKG---IPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP- 179 (329)
Q Consensus 104 ~~~~kLk~~i~~G---IP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~- 179 (329)
.+.++||++++.| +|+++|+.||+.|+|+....... +|..... ..++..+||++||+||+|+++.|.++
T Consensus 32 ~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~---~~~~~~~----~~~~~~~qI~~Dv~RT~~~~~~~~~~~ 104 (292)
T 4hl4_A 32 TDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP---ISGKNLR----QMSKDYQQVLLDVRRSLRRFPPGMPEE 104 (292)
T ss_dssp CCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS---CCCTTHH----HHCTTHHHHHHHHHTTGGGSCTTSCHH
T ss_pred ccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC---chhhhhc----ccchhHHHHHHhhhhhhhhccCCCCHH
Confidence 4789999999754 89999999999999997654322 2322211 13678999999999999999998653
Q ss_pred ---chHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHH
Q 020189 180 ---DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDL 256 (329)
Q Consensus 180 ---~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 256 (329)
.+++.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||++++++.. +++|.+++.+++..+.+++.+
T Consensus 105 ~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l-~~~~~~~~~~~~~~~~~l~~l 182 (292)
T 4hl4_A 105 QREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHL-RDFMDPTMDNTKHILNYLMPI 182 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTT-TGGGCSSSCTTTGGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH-HHhcccchHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999 89999999999999865 799999999999999999999
Q ss_pred HHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCC-hhhHHHHHHHHHhcCchHHHHHHHHHHhhh--hhhcc
Q 020189 257 LVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLP-SETTLRVWDVLFYEGAKVLFHVALAIFKVR--FLLTL 327 (329)
Q Consensus 257 l~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp-~~~~lriWD~~l~eG~~~l~~~alailk~~--~il~l 327 (329)
++.++|+|++||++.+++ .+|+++||+|+|++++| ++.++||||+|+++|..+++++|+||+..+ +|+..
T Consensus 183 l~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~~~~v~~ail~~~~~~Ll~~ 255 (292)
T 4hl4_A 183 IDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDC 255 (292)
T ss_dssp HHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTHHHHHHHHHHHHTHHHHHTS
T ss_pred HHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999994 79999999999999996 999999999999999999999999999994 36654
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=277.90 Aligned_cols=207 Identities=20% Similarity=0.282 Sum_probs=158.4
Q ss_pred CCCHHHHHHHHHhC-CCCchHHHHHHHhHcchhhhccC-------chHHHHHHHHHhcCCCCcccchhhhccCCcCCCCC
Q 020189 103 LANAITLKKLIRKG-IPPVLRPKVWFSLSGAAKKKSTV-------PESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHP 174 (329)
Q Consensus 103 ~~~~~kLk~~i~~G-IP~~~R~~vW~~llg~~~~~~~~-------~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~ 174 (329)
..|.+|||+++++| ||+.+|+.||+.|+|+.+...+. ....|++++++. ...+||+.+.++ +.
T Consensus 37 ~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~~-----~~~r~I~~~tP~----~~ 107 (294)
T 3qwl_A 37 RLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHAL-----KVVRFVSDATPQ----AE 107 (294)
T ss_dssp BCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHH-----HHTTSCCTTSCH----HH
T ss_pred CCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHhh-----hhhhhhhccCch----HH
Confidence 45899999999999 99999999999999984433222 124577777662 234444443221 11
Q ss_pred CCCCcchHHHHHH--HHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHH
Q 020189 175 WLDTPDGHATLRR--VLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRV 252 (329)
Q Consensus 175 ~f~~~~~~~~L~r--VL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 252 (329)
.|..... +.+ ...++. .+++ .++|||..||+++++++.+|++|||||+++|++. +++|.++++|++. .
T Consensus 108 vfl~~~~---~~~~~l~~~~~-~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l--~~~f~~~~~gl~~---~ 177 (294)
T 3qwl_A 108 VYLRMYQ---LESGKLPRSPS-FPLE-PDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQL--NTKYRDSLPQLPK---A 177 (294)
T ss_dssp HHHHHHH---HHHTCCCSSTT-SCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH--HTTTTTTGGGHHH---H
T ss_pred HHHHHHH---ccccccccccc-CCcc-cchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHhhCCChhHHHH---H
Confidence 1111000 000 011111 1233 2569999999999988889999999999999984 6899999998875 4
Q ss_pred HHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhh--hhhhccC
Q 020189 253 FKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKV--RFLLTLN 328 (329)
Q Consensus 253 ~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~--~~il~l~ 328 (329)
++.+++.++|+|++||+++|+.+.+++.+||+|+|++.+|++.++||||+++++|.++++++|+|+|+. ..|+.++
T Consensus 178 l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~~valAiL~~~r~~Ll~~~ 255 (294)
T 3qwl_A 178 FEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVMALN 255 (294)
T ss_dssp HHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHHHHHHHHHHHTHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhCCC
Confidence 589999999999999999999888888899999999999999999999999999999999999999998 4476665
No 8
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=30.68 E-value=41 Score=23.75 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=19.0
Q ss_pred HHHHHhCCCCchHHHHHHHhHcchh
Q 020189 110 KKLIRKGIPPVLRPKVWFSLSGAAK 134 (329)
Q Consensus 110 k~~i~~GIP~~~R~~vW~~llg~~~ 134 (329)
..+-...||.+.|..+|+-+....+
T Consensus 42 edL~~mkIpe~~R~kIWk~l~e~~q 66 (80)
T 1dxs_A 42 EDLGALKIPEQYRMTIWRGLQDLKQ 66 (80)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHC--
T ss_pred HHHHhCCCCHHHHHHHHhhHHHhcc
Confidence 3455678999999999999886543
No 9
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=21.33 E-value=30 Score=20.08 Aligned_cols=16 Identities=38% Similarity=0.827 Sum_probs=10.7
Q ss_pred cCCCCCccccchHHHH
Q 020189 195 RDSDVGYCQGLNYVAA 210 (329)
Q Consensus 195 ~np~igY~QGm~~Iaa 210 (329)
.+.-.|||||-.++..
T Consensus 13 ehtmcgycqgplymtc 28 (40)
T 1erd_A 13 EHTMCGYCQGPLYMTC 28 (40)
T ss_dssp CGGGGGGSCHHHHHHH
T ss_pred cccccccccCCeeEEE
Confidence 3455799999655543
No 10
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=13.51 E-value=1.1e+02 Score=28.50 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHhCC--CCc-hHHHHHHHhHcc
Q 020189 104 ANAITLKKLIRKGI--PPV-LRPKVWFSLSGA 132 (329)
Q Consensus 104 ~~~~kLk~~i~~GI--P~~-~R~~vW~~llg~ 132 (329)
.++.++|++++.|. |.. .|+.||..+...
T Consensus 359 ISgT~IR~~L~~G~~pP~~f~~peV~~~I~~~ 390 (396)
T 1jhd_A 359 LSGTKVREMLGQGIAPPPEFSRPEVAKILMDY 390 (396)
T ss_dssp CCHHHHHHHHHTTCCCCTTTCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHCCCCCCcccCCHHHHHHHHHh
Confidence 57899999999995 444 899999998743
Done!