BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020190
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QR0|A Chain A, Crystal Structure Of The 4'-Phosphopantetheinyl
Transferase Sfp- Coenzyme A Complex
Length = 228
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 84/165 (50%), Gaps = 25/165 (15%)
Query: 68 REKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWENG 127
REK ++ + D + LL VLVR+ I+R Q++ ++F YGKP
Sbjct: 29 REKCRRFYHKEDAHR--TLLGDVLVRSVISR---QYQLDKSDIRFSTQEYGKP------- 76
Query: 128 DKWCPPPL---HFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEV 184
C P L HFNISH+ V G + PIGID+E + K L AKR+FS E
Sbjct: 77 ---CIPDLPDAHFNISHSGRWV-IGAFDSQPIGIDIE----KTKPISLEIAKRFFSKTEY 128
Query: 185 KLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIR 229
L A D + Q LW++KE+++K G+G S P ++F++R
Sbjct: 129 SDLLA-KDKDEQTDYFYHLWSMKESFIKQEGKGLS-LPLDSFSVR 171
>pdb|2BYD|A Chain A, Structure Of Aminoadipate-semialdehyde Dehydrogenase-
Phosphopantetheinyl Transferase
pdb|2C43|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase-
Phosphopantetheinyl Transferase In Complex With Coenzyme
A
Length = 323
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 67 PREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWEN 126
P EK+ + + K+A+ R+++R +A + N N ++ ++T GKP + ++
Sbjct: 52 PEEKERIGQFVFARDAKAAMAGRLMIRKLVAE-KLNIPWN--HIRLQRTAKGKPVLAKDS 108
Query: 127 GDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAF---AKRYFSPDE 183
+ + P +FNISH + +GID+ + + I F KR F+ E
Sbjct: 109 SNPY--PNFNFNISHQGDYAVLAAEPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKE 166
Query: 184 VKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFS 219
+ + + D Q + W LKE+++KA+G G
Sbjct: 167 WETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLG 202
>pdb|2CG5|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase-
Phosphopantetheinyl Transferase In Complex With
Cytosolic Acyl Carrier Protein And Coenzyme A
Length = 319
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 67 PREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWEN 126
P EK+ + + K+A+ R+++R +A + N N ++ ++T GKP + ++
Sbjct: 52 PEEKERIGQFVFARDAKAAMAGRLMIRKLVAE-KLNIPWN--HIRLQRTAKGKPVLAKDS 108
Query: 127 GDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAF---AKRYFSPDE 183
+ + P +FNISH + +GID+ + + I F KR F+ E
Sbjct: 109 SNPY--PNFNFNISHQGDYAVLAAEPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKE 166
Query: 184 VKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFS 219
+ + + D Q + W LKE+++KA+G G
Sbjct: 167 WETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLG 202
>pdb|1FTE|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 1)
pdb|1FTE|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 1)
pdb|1FTE|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 1)
pdb|1FTF|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 2)
pdb|1FTF|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 2)
pdb|1FTF|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 2)
pdb|1FTH|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (3'5'-Adp Complex)
pdb|1FTH|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (3'5'-Adp Complex)
pdb|1FTH|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (3'5'-Adp Complex)
Length = 122
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 154 VPIGIDVEE--KQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYV 211
V GID+EE + FAKR + E++ T++ Q + L W+ KEA+
Sbjct: 5 VGHGIDIEELASIESAVTRHEGFAKRVLTALEMERFTSLKGRR-QIEYLAGRWSAKEAFS 63
Query: 212 KAVGRGFSAAPFNTFTI 228
KA+G G S F +
Sbjct: 64 KAMGTGISKLGFQDLEV 80
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 206 LKEAYVKAVGRGFSAAPFN--TFTIRARVVKMGGFHHFDTQHSEASEIVVESSDDPENLT 263
+ ++Y VG + APF+ FT A +K+ ++ A+ + VE N +
Sbjct: 258 ISQSYPDDVGNPGTGAPFSDVNFTGGATTIKV---------NNAATRVTVECG----NCS 304
Query: 264 RNWQFALLDLAGSHYAAICIEKENSAGGE 292
NW ++ L + G I +K GG+
Sbjct: 305 GNWNWSQLTVTGGKAGTIKSDKAKITGGQ 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,125,043
Number of Sequences: 62578
Number of extensions: 352100
Number of successful extensions: 705
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 9
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)