Query 020190
Match_columns 329
No_of_seqs 223 out of 1715
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0945 Alpha-aminoadipic semi 100.0 8.6E-40 1.9E-44 296.4 14.2 245 28-287 3-249 (289)
2 COG2091 Sfp Phosphopantetheiny 100.0 1.1E-34 2.4E-39 263.2 15.6 175 42-232 3-177 (223)
3 PRK10351 holo-(acyl carrier pr 100.0 1.4E-30 3.1E-35 230.3 12.9 132 65-219 9-140 (187)
4 PRK10251 phosphopantetheinyltr 99.9 2.8E-23 6E-28 186.6 14.9 169 41-239 15-185 (207)
5 COG2977 EntD Phosphopantethein 99.7 1.3E-15 2.9E-20 136.4 13.3 168 39-233 16-188 (228)
6 PRK14659 acpS 4'-phosphopantet 99.6 1.1E-14 2.5E-19 120.9 12.4 112 155-285 4-120 (122)
7 PF01648 ACPS: 4'-phosphopante 99.6 2.2E-15 4.7E-20 122.5 6.1 113 155-282 1-114 (115)
8 PRK14656 acpS 4'-phosphopantet 99.4 1.2E-12 2.7E-17 109.4 10.4 117 155-285 4-124 (126)
9 TIGR00556 pantethn_trn phospho 99.4 2.9E-12 6.4E-17 107.0 11.1 118 154-285 3-126 (128)
10 PRK14657 acpS 4'-phosphopantet 99.3 5.3E-12 1.2E-16 105.1 9.9 113 155-285 4-122 (123)
11 PRK14660 acpS 4'-phosphopantet 99.3 1.5E-11 3.2E-16 102.7 11.0 117 155-285 4-124 (125)
12 PRK14661 acpS 4'-phosphopantet 99.3 1.7E-11 3.6E-16 106.3 11.2 107 155-287 4-110 (169)
13 PRK14658 acpS 4'-phosphopantet 99.3 3.4E-11 7.4E-16 99.0 10.7 107 155-285 4-110 (115)
14 TIGR00516 acpS holo-[acyl-carr 99.3 5.3E-11 1.1E-15 98.8 10.8 113 155-284 3-119 (121)
15 PRK00070 acpS 4'-phosphopantet 99.2 8.1E-11 1.8E-15 97.9 10.0 117 155-285 4-124 (126)
16 COG0736 AcpS Phosphopantethein 99.2 1.6E-10 3.5E-15 96.2 9.2 117 155-286 4-125 (127)
17 PRK14663 acpS 4'-phosphopantet 99.2 5.7E-10 1.2E-14 91.9 12.5 110 158-285 4-114 (116)
18 PRK14662 acpS 4'-phosphopantet 99.1 4.5E-10 9.7E-15 93.1 9.2 112 155-285 4-118 (120)
19 PRK14658 acpS 4'-phosphopantet 98.9 6.7E-09 1.4E-13 85.4 9.2 82 61-147 23-104 (115)
20 PRK00070 acpS 4'-phosphopantet 98.9 5E-09 1.1E-13 87.1 8.1 86 61-150 27-121 (126)
21 PRK14659 acpS 4'-phosphopantet 98.5 6.3E-07 1.4E-11 74.4 9.7 86 61-149 27-116 (122)
22 PRK14660 acpS 4'-phosphopantet 98.5 5.1E-07 1.1E-11 75.4 8.3 86 61-150 27-121 (125)
23 COG0736 AcpS Phosphopantethein 98.5 6.4E-07 1.4E-11 74.7 7.8 83 61-147 27-118 (127)
24 TIGR00516 acpS holo-[acyl-carr 98.4 1.3E-06 2.9E-11 72.4 9.1 86 61-150 26-117 (121)
25 PRK14662 acpS 4'-phosphopantet 98.4 1.4E-06 3.1E-11 72.2 8.3 84 61-149 27-114 (120)
26 PRK14663 acpS 4'-phosphopantet 98.4 2E-06 4.4E-11 70.8 9.1 85 61-149 21-110 (116)
27 PRK14657 acpS 4'-phosphopantet 98.1 9.9E-06 2.2E-10 67.4 8.2 83 61-149 27-118 (123)
28 PRK14656 acpS 4'-phosphopantet 98.1 1.3E-05 2.8E-10 67.0 8.4 85 61-149 27-120 (126)
29 PRK14661 acpS 4'-phosphopantet 97.7 0.00023 5.1E-09 62.1 9.1 81 60-147 19-102 (169)
30 TIGR00556 pantethn_trn phospho 97.0 0.0048 1E-07 51.3 8.9 88 61-150 26-123 (128)
31 PF01648 ACPS: 4'-phosphopante 96.6 0.0047 1E-07 49.6 5.7 89 60-150 20-115 (115)
32 PF13986 DUF4224: Domain of un 83.5 3.6 7.9E-05 28.3 5.1 42 64-124 2-43 (47)
33 PF11572 DUF3234: Protein of u 59.7 4.1 8.9E-05 32.1 0.7 14 203-216 58-71 (103)
34 COG0643 CheA Chemotaxis protei 58.6 12 0.00026 40.2 4.2 86 114-219 455-540 (716)
35 PF09866 DUF2093: Uncharacteri 30.3 34 0.00073 23.0 1.4 17 142-159 4-20 (42)
36 cd08778 Death_TNFRSF21 Death d 23.7 1.7E+02 0.0038 21.8 4.3 53 157-209 2-58 (84)
No 1
>KOG0945 consensus Alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=8.6e-40 Score=296.41 Aligned_cols=245 Identities=35% Similarity=0.543 Sum_probs=199.5
Q ss_pred CCCCCCCCCCCCCeEEEEEEe-CCCCCChhhHHHHhccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 020190 28 LPPLVPVKLPSKMETHFWYVL-PDEVKSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVN 106 (329)
Q Consensus 28 ~~~~~~~~~~~~~~v~lw~~~-~~~~~~~~~~~~~~~~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~g~~ 106 (329)
.|.+.+...|.-.+.+.|.+. .+...+-+++..+...|+++|++|+.+|+..+|++..|+||+++|++++.+ ++++
T Consensus 3 ~~~~~~~~v~r~~~~~~wAf~~~~~e~s~a~f~~a~~~ls~se~erI~qfr~~~DakaaL~grLl~R~~~a~~---~~~~ 79 (289)
T KOG0945|consen 3 LPSLVPCKVPRWMISLQWAFVVPDFEKSLALFRHAVQSLSPSEKERILQFRFDEDAKAALAGRLLVRHLVAIY---LGVP 79 (289)
T ss_pred cchhhhhhhhHHHhhhhhheecchhhhhHHHHHHHHHhCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---hCCC
Confidence 466677777765678888543 333344557888899999999999999999999999999999999999999 7999
Q ss_pred CCceeEecCCCCccEEeccCCCCCCCCCceEEeccCCCceeEEEecccccccchhhh-hhhhhhhHHHHHHhcCCHHHHH
Q 020190 107 PRSLKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEK-QRRLKNKILAFAKRYFSPDEVK 185 (329)
Q Consensus 107 p~~i~~~~~~~GKP~l~~~~~~~~~~~~l~fSISHs~~~v~~avs~~~~vGVDIE~~-~~~~~~~~~~l~~~~fs~~E~~ 185 (329)
|++++|.++.+|||++.... .....+.++|||||.|++++||.....+|||||++. .+....++.++++++||+.|++
T Consensus 80 ~n~l~f~rt~~GKP~l~qn~-~~p~~~~f~fNvSH~gd~iv~at~~~~~VGIDIm~~~~r~~~~e~l~~~kr~fS~~E~k 158 (289)
T KOG0945|consen 80 WNELRFSRTEYGKPVLWQNY-SNPFSPTFGFNVSHQGDLIVVATTVHVPVGIDIMRPKERKTAHEELELFKRVFSEDEWK 158 (289)
T ss_pred hhHeEeecccCCCcchhhcc-cCCCCCCccceeeeeceEEEEeccCCcccceeeeecccccchHHHHHHHHHhcCHHHHH
Confidence 99999999999999554322 112357899999999999999999899999999998 4445678899999999999999
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEecCCCceeEEeccCCccccchhhccCCCCCCCCCCC
Q 020190 186 LLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRARVVKMGGFHHFDTQHSEASEIVVESSDDPENLTRN 265 (329)
Q Consensus 186 ~l~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~ 265 (329)
.|+..+++..+...||++||+||||+||+|.||. .+|+.++|...+......+ +...... ..+ +...++
T Consensus 159 ~l~s~~~e~~~~~~FyrlWtLKEa~lKAtGvGl~-~~L~~~~F~~~p~~~~~g~------s~~~T~~-~~~---g~~~~q 227 (289)
T KOG0945|consen 159 MLKSAPDEEVQRTMFYRLWTLKEAILKATGVGLN-TDLSLLDFSANPFNTATGQ------SKVETLD-EVD---GIFQSQ 227 (289)
T ss_pred HHHcCCChhhHHHHHHHHHHHHHHHHHHhcCCcc-cccccccccccccccccce------eeeeeee-ccC---Cccchh
Confidence 9999998889999999999999999999999999 7999999987665411110 1111110 011 245788
Q ss_pred EEEEEeecCCCeEEEEEEeccC
Q 020190 266 WQFALLDLAGSHYAAICIEKEN 287 (329)
Q Consensus 266 W~~~~~~l~~~~~~Ava~~~~~ 287 (329)
|.|....++..|.+|||.+...
T Consensus 228 w~feE~~i~~~h~vav~~~k~d 249 (289)
T KOG0945|consen 228 WNFEESFIDEAHSVAVCMEKSD 249 (289)
T ss_pred hhhhhhhccccceeEEeccCCC
Confidence 9999999999999999998764
No 2
>COG2091 Sfp Phosphopantetheinyl transferase [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-34 Score=263.21 Aligned_cols=175 Identities=25% Similarity=0.377 Sum_probs=151.4
Q ss_pred EEEEEEeCCCCCChhhHHHHhccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCceeEecCCCCccE
Q 020190 42 THFWYVLPDEVKSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPE 121 (329)
Q Consensus 42 v~lw~~~~~~~~~~~~~~~~~~~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~g~~p~~i~~~~~~~GKP~ 121 (329)
+.+|.++... +....+..+..++.+|+.|..||++.+||.+|+++|+++|.+|+.. ++++|..+.|.++++|||+
T Consensus 3 ~~~~v~~~~~--~~~~~~~~l~~~~~~E~~r~~r~~~~~dr~r~l~~~~~lr~lls~~---l~~~~~~~~~~~~~~GKP~ 77 (223)
T COG2091 3 ATVFVVGIQS--DRPLIERRLPSLLSEEARRGPRYRNKRDRERFLASRLLLRALLSIA---LGLDPELLQISYGERGKPY 77 (223)
T ss_pred ceEEEEeccC--cchhhhhhhcccchHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHH---hCCCcccceeeECCCCCcc
Confidence 3455555433 2234566778888889999999999999999999999999999998 8999999999999999999
Q ss_pred EeccCCCCCCCCCceEEeccCCCceeEEEecccccccchhhhhhhhhhhHHHHHHhcCCHHHHHHHHcCCChhHHHHHHH
Q 020190 122 VDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELI 201 (329)
Q Consensus 122 l~~~~~~~~~~~~l~fSISHs~~~v~~avs~~~~vGVDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~ 201 (329)
+.+ ...++|||||||+||+||++..++||||||.++++ .....+++++|++.|.+.+..... +++.++||
T Consensus 78 ~~~-------~~~~~FniSHSg~~v~v~l~~~~~iGVDIE~~~p~--~~~~~la~~ff~~~e~~e~~~~~~-~~~~~~F~ 147 (223)
T COG2091 78 LPD-------ENLLDFNISHSGDYVAVALSKEGEIGVDIEKIRPR--AGWRSLAARFFHPFEPNELAWLDK-DQDNEAFY 147 (223)
T ss_pred ccC-------CCCCcEEEeeeCCeEEEEEecccceeeeEEEecCC--CcchhhHHHhcCcccHHHHhhcCh-HHHHHHHH
Confidence 984 34599999999999999999889999999998763 256788999999999999999875 45689999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEecC
Q 020190 202 KLWTLKEAYVKAVGRGFSAAPFNTFTIRARV 232 (329)
Q Consensus 202 ~~WtlKEA~~Ka~G~GL~~~~l~~~~~~~~~ 232 (329)
++||+||||+|++|.||. .+|+.+.+....
T Consensus 148 ~lWt~KEA~lKa~G~Gl~-~~L~~~~~~~~~ 177 (223)
T COG2091 148 RLWTLKEAVLKATGKGLA-DGLSSVDLTPIA 177 (223)
T ss_pred HHHHHHHHHHHhhCCccc-cCccceeecccc
Confidence 999999999999999999 799999887543
No 3
>PRK10351 holo-(acyl carrier protein) synthase 2; Provisional
Probab=99.97 E-value=1.4e-30 Score=230.28 Aligned_cols=132 Identities=27% Similarity=0.352 Sum_probs=112.7
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCceeEecCCCCccEEeccCCCCCCCCCceEEeccCCC
Q 020190 65 LSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTSS 144 (329)
Q Consensus 65 Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~g~~p~~i~~~~~~~GKP~l~~~~~~~~~~~~l~fSISHs~~ 144 (329)
|+++-+++. .++++|.+||+||+++|++++.. | .|.++++|||++.. ..+++||||||++
T Consensus 9 ~~~~~~~~~---~~~kRR~efLagR~lLr~~L~~~-------p---~i~~~~~GKP~l~~-------~~~~~fSISHSg~ 68 (187)
T PRK10351 9 LPPALREQA---PQGPRRARWLAGRVLLSHALSPL-------P---EIIYGEQGKPAFAP-------ETPLWFNLSHSGD 68 (187)
T ss_pred CCHHHHHhC---CCHHHHHHHHHHHHHHHHHhhcC-------C---CcccCcCCCccccC-------CCCCeEEEecccC
Confidence 665544433 37899999999999999998642 2 37889999999973 3679999999999
Q ss_pred ceeEEEecccccccchhhhhhhhhhhHHHHHHhcCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020190 145 LVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFS 219 (329)
Q Consensus 145 ~v~~avs~~~~vGVDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~ 219 (329)
+++|+++...+||||||.++++ .++..+++++|+++|+++|.+.+. +++.+.||++||+||||+|+.|.++.
T Consensus 69 ~va~a~s~~~~VGIDIE~i~~~--~~~~~la~~~fs~~E~~~L~~~~~-~~~~~~F~~lWT~KEA~lKa~G~~~~ 140 (187)
T PRK10351 69 DIALLLSDEGEVGCDIEVIRPR--ANWRSLANAVFSLGEHAEMDAVHP-EQQLEAFWRIWTRKEAIVKQRGGSAW 140 (187)
T ss_pred cEEEEEEcCCCeEEEEEEecCc--cCHHHHHHHhCCHHHHHHHHcCCc-hhHHHHHHHHHHHHHHHhcccCCCCc
Confidence 9999999778999999998753 356789999999999999998764 56889999999999999999999997
No 4
>PRK10251 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex; Provisional
Probab=99.90 E-value=2.8e-23 Score=186.64 Aligned_cols=169 Identities=18% Similarity=0.123 Sum_probs=125.6
Q ss_pred eEEEEE--EeCCCCCChhhHHHHhccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCceeEecCCCC
Q 020190 41 ETHFWY--VLPDEVKSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYG 118 (329)
Q Consensus 41 ~v~lw~--~~~~~~~~~~~~~~~~~~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~g~~p~~i~~~~~~~G 118 (329)
.+.+|. ++.+.+.+ +.+ ..+--|....++.. ++|.+|++||.++|.+|..+ |..+ + ...+++|
T Consensus 15 ~~~~~~~~Fd~~~~~~-~~~---~~i~~p~~l~~Av~----kRr~EflAgR~~A~~aL~~l----g~~~--~-~~~g~~r 79 (207)
T PRK10251 15 GHTLHFVEFDPASFHE-QDL---LWLPHYAQLQHAGR----KRKAEHLAGRIAAVYALREY----GYKC--V-PAIGELR 79 (207)
T ss_pred CcEEEEEEechHHCCH-hHc---cCCCCcHHHHHHHH----HHHHHHHHHHHHHHHHHHHh----CCCC--C-CCcCCCC
Confidence 344554 44444433 222 33333556555544 78999999999999999985 5433 2 2679999
Q ss_pred ccEEeccCCCCCCCCCceEEeccCCCceeEEEecccccccchhhhhhhhhhhHHHHHHhcCCHHHHHHHHcCCChhHHHH
Q 020190 119 KPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQ 198 (329)
Q Consensus 119 KP~l~~~~~~~~~~~~l~fSISHs~~~v~~avs~~~~vGVDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~ 198 (329)
+|+++ +++.+|||||+++++|+++ ...||||||.+... ....++++++|+++|++++.+.+. .+..
T Consensus 80 ~P~wP---------~gi~gSISHS~~~a~aav~-~~~VGIDIE~~~~~--~~~~~i~~~ilt~~E~~~l~~~~~--~~~~ 145 (207)
T PRK10251 80 QPVWP---------AGVYGSISHCGTTALAVVS-RQPIGIDIEEIFSA--QTATELTDNIITPAEHERLADCGL--AFPL 145 (207)
T ss_pred CccCC---------CCceeCcccccCeEEEEEe-CCCcEEEeeecccc--chHHHHHHHhCCHHHHHHHHcCCc--cccc
Confidence 99997 5799999999999999999 46899999997432 345788999999999999998763 2456
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCceEEEEecCCCceeEE
Q 020190 199 ELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRARVVKMGGFH 239 (329)
Q Consensus 199 ~f~~~WtlKEA~~Ka~G~GL~~~~l~~~~~~~~~~~~~~~~ 239 (329)
.|+.+||+|||++||+|..-. .+|...++..-+.+...+.
T Consensus 146 ~~tlifSAKEAlfKA~~~~~~-~~F~~a~i~~~~~~~~~l~ 185 (207)
T PRK10251 146 ALTLAFSAKESAFKASEIQTL-AGFLDYQIISWNKQQIIIH 185 (207)
T ss_pred ceeeeeeHHHHHHHhcCcccc-CCCCeEEEEEecCCEEEEE
Confidence 789999999999999999844 7899988864333333333
No 5
>COG2977 EntD Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.66 E-value=1.3e-15 Score=136.36 Aligned_cols=168 Identities=18% Similarity=0.108 Sum_probs=123.1
Q ss_pred CCeEEEEEEeCCCCCChhhHHHHhccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCceeEecCCCC
Q 020190 39 KMETHFWYVLPDEVKSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYG 118 (329)
Q Consensus 39 ~~~v~lw~~~~~~~~~~~~~~~~~~~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~g~~p~~i~~~~~~~G 118 (329)
...+|.-..+.+...++ ...++..+.+. +.+ ..+++|.+|++||.+.|++|.++ |+ .+..+.++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~-----~a~~~p~~p~~-i~~-av~KRkaEflAgR~cA~~AL~~l----g~--~~~Pi~~G~~r 82 (228)
T COG2977 16 GHTLHFVEFDPAPFCEP-----DALWLPEEPPL-IAR-AVPKRKAEFLAGRICARQALREL----GV--ADVPILRGEDR 82 (228)
T ss_pred CCceeEEEccccccCCc-----hhhcCCCCcch-hhh-hhHHHHHHHHHHHHHHHHHHHHh----CC--CCCCcccCCCC
Confidence 44677666665544321 22445544432 222 24478899999999999999985 53 55678899999
Q ss_pred ccEEeccCCCCCCCCCceEEeccCCCceeEEEecc---cccccchhhhhhhhhhhHHHHHHhcCCHHHHHHHHcCCChhH
Q 020190 119 KPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVN---VPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEI 195 (329)
Q Consensus 119 KP~l~~~~~~~~~~~~l~fSISHs~~~v~~avs~~---~~vGVDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~~ 195 (329)
.|.++ .++..||||++++++++|++. ..||||||.+.. .++..+++..+.+++|+..+.+... .
T Consensus 83 aPlWP---------~gvvGSIsH~~~~A~Avv~~~~~~~~iGIDiE~~~~--~~~a~ei~~~I~t~~E~~~l~~~~~--~ 149 (228)
T COG2977 83 APLWP---------AGVVGSISHCDGTALAVVARRGRVRSIGIDIEPHES--LPTAREIADIIITPAERARLARAGL--A 149 (228)
T ss_pred CCCCC---------CcceEEeeccCCeeeEeeecccccccceeecccccc--CcchhHHHHHhCCHHHHHHHhhccc--c
Confidence 99998 689999999999999999853 679999999875 3456678899999999999998753 2
Q ss_pred HHHHHHHHHHHHHHHHhhcC--CCCCCCCCceEEEEecCC
Q 020190 196 QRQELIKLWTLKEAYVKAVG--RGFSAAPFNTFTIRARVV 233 (329)
Q Consensus 196 ~~~~f~~~WtlKEA~~Ka~G--~GL~~~~l~~~~~~~~~~ 233 (329)
.....+.++|+|||+.||.- .+-. .+|.+..+.....
T Consensus 150 ~~~~~tLlFsAKESlfKA~yP~~~r~-~gFedA~i~~~~~ 188 (228)
T COG2977 150 FLLALTLLFSAKESLFKALYPLVKRW-LGFEDAQISSDTD 188 (228)
T ss_pred hhhhhhhhhhhhHHHHHhhhhhhhhh-cCchhheeeeccC
Confidence 23335579999999999984 4554 4566666665443
No 6
>PRK14659 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.60 E-value=1.1e-14 Score=120.94 Aligned_cols=112 Identities=22% Similarity=0.221 Sum_probs=85.6
Q ss_pred ccccchhhhhhhhh--h-hHHHHHHhcCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhcCCCCCCCC--CceEEEE
Q 020190 155 PIGIDVEEKQRRLK--N-KILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAP--FNTFTIR 229 (329)
Q Consensus 155 ~vGVDIE~~~~~~~--~-~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~~~--l~~~~~~ 229 (329)
.|||||+.+.+... . ....+++++||++|+..+.+......+.+.|+..||+|||++||+|.|+. .+ ++++++.
T Consensus 4 giGiDiv~i~ri~~~~~~~~~~f~~r~ft~~E~~~~~~~~~~~~~~~~la~rwaaKEA~~KAlg~g~~-~~~~~~di~i~ 82 (122)
T PRK14659 4 GIGTDIVYIPRILNLLKKFGNKFLNRVFSEKEIEDSLKYTSQEARARHFAKRFAAKEAYVKALGTGFG-RGIKMKDISVY 82 (122)
T ss_pred EEEeeEEEehHHHHHHHHhhHHHHHhcCCHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhccCcC-cCccccEEEEE
Confidence 48999999876320 1 12458899999999999875433334677899999999999999999987 44 7999998
Q ss_pred ecCCCceeEEeccCCccccchhhccCCCCCCCCCCCEEEEEeecCCCeEEEEEEec
Q 020190 230 ARVVKMGGFHHFDTQHSEASEIVVESSDDPENLTRNWQFALLDLAGSHYAAICIEK 285 (329)
Q Consensus 230 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~l~~~~~~Ava~~~ 285 (329)
.++.+.+.+.+.+. ....|...++..+.+|++|+|+-.
T Consensus 83 ~~~~g~P~v~l~~~------------------~~~~~i~vSiSh~~~ya~A~vi~~ 120 (122)
T PRK14659 83 NDLYGKPQITVSKS------------------NIDHKIELSLSDDGDYAIAFVVLH 120 (122)
T ss_pred ECCCCCeEEEECCc------------------ccccEEEEEEEcCCCcEEEEEEEE
Confidence 88777777765321 122688889999999999999754
No 7
>PF01648 ACPS: 4'-phosphopantetheinyl transferase superfamily; InterPro: IPR008278 These proteins transfer the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of pp-binding. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of the cysteamine thiol of 4'-PP []. This superfamily consists of two subtypes: The ACPS type such as ACPS_ECOLI and the Sfp type such as SFP_BACSU. The structure of the Sfp type is known [], which shows the active site accommodates a magnesium ion. The most highly conserved regions of the alignment are involved in binding the magnesium ion. ; GO: 0000287 magnesium ion binding, 0008897 holo-[acyl-carrier-protein] synthase activity, 0009059 macromolecule biosynthetic process; PDB: 3QMN_S 3GWM_A 3NFD_D 3NE9_C 1FTH_C 1FTE_C 1FTF_B 3HYK_B 2WDY_A 2WDS_A ....
Probab=99.58 E-value=2.2e-15 Score=122.52 Aligned_cols=113 Identities=29% Similarity=0.405 Sum_probs=76.7
Q ss_pred ccccchhhhhhhhhhhHHHHHHhcCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCceEEEEecCC
Q 020190 155 PIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVG-RGFSAAPFNTFTIRARVV 233 (329)
Q Consensus 155 ~vGVDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~WtlKEA~~Ka~G-~GL~~~~l~~~~~~~~~~ 233 (329)
.||||||.+.+.......++++++||++|++++...+. .++.+.|+.+||+|||++||+| .| . .+++..++.+...
T Consensus 1 ~iGiDIe~~~~~~~~~~~~~~~~~~t~~E~~~l~~~~~-~~~~~~~~~~Wt~KEA~~Ka~g~~g-~-~~~~~~~i~~~~~ 77 (115)
T PF01648_consen 1 GIGIDIEKIDRPRERRFEKFAERFFTPEELEWLRSLPS-EERLQAFTLLWTAKEAVYKALGLTG-S-LDLSFREIELHKP 77 (115)
T ss_dssp EEEEEEEEHHHHHHHHTTHHHHHHS-HHHHHHHHCTSS-HHHHHHHHHHHHHHHHHHHHHTTST-S-STSHGGGEEEEES
T ss_pred CEEEEeeEeccccccCHHHHHHHhCCHHHHHHHHhCCc-cchHHHHHHHHHHHHHHHHHhcccC-C-cccccEEEEEEcC
Confidence 48999999886211245688999999999999999885 5688999999999999999999 88 4 4566666665443
Q ss_pred CceeEEeccCCccccchhhccCCCCCCCCCCCEEEEEeecCCCeEEEEE
Q 020190 234 KMGGFHHFDTQHSEASEIVVESSDDPENLTRNWQFALLDLAGSHYAAIC 282 (329)
Q Consensus 234 ~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~l~~~~~~Ava 282 (329)
......+.. ..... ......|.+......++++++++
T Consensus 78 ~~~~~~~~~-----~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~ 114 (115)
T PF01648_consen 78 PGGRPSLSL-----WASWI-------FDGDKIWRFHVSISHDEDYAAAF 114 (115)
T ss_dssp TTSCEEEEE-----HHHHH-------HHHTTTEEEEEEEEEESSEEEEE
T ss_pred CCCCeEEEE-----eHHhh-------hhhcCceEEEEEEEeCCCEEEEE
Confidence 222222110 00000 12456788887766656555554
No 8
>PRK14656 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.42 E-value=1.2e-12 Score=109.36 Aligned_cols=117 Identities=17% Similarity=0.258 Sum_probs=83.5
Q ss_pred ccccchhhhhhhh---hhhHHHHHHhcCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCceEEEEe
Q 020190 155 PIGIDVEEKQRRL---KNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSA-APFNTFTIRA 230 (329)
Q Consensus 155 ~vGVDIE~~~~~~---~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~-~~l~~~~~~~ 230 (329)
.|||||+.+.+-. ......+++++||++|++++...+. ..+.|+..|++|||++||+|+|+.. ..++++++..
T Consensus 4 giGiDIv~i~Ri~~~~~~~~~~f~~rift~~E~~~~~~~~~---~~~~~a~rwAaKEA~~KAlg~g~~~~~~~~diei~~ 80 (126)
T PRK14656 4 GTGVDIVDISRFERFVDEGNVALLERIFTPHEQEYCAGKKH---SAQHYALRFAAKEAFLKALGTGLRDGISWHDMEVVN 80 (126)
T ss_pred EEeeeEEEchHHHHHHhhhhhHHHHHhCCHHHHHHHHcCCc---HHHHHHHHhHHHHHHHHHhccCCCCCceeeEEEEEE
Confidence 4899999887631 1123468899999999999987653 3457999999999999999999972 2467788877
Q ss_pred cCCCceeEEeccCCccccchhhccCCCCCCCCCCCEEEEEeecCCCeEEEEEEec
Q 020190 231 RVVKMGGFHHFDTQHSEASEIVVESSDDPENLTRNWQFALLDLAGSHYAAICIEK 285 (329)
Q Consensus 231 ~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~l~~~~~~Ava~~~ 285 (329)
++.+.+.+.+.+... .. ... .....|.+ ++..+.+|.+|+|+-.
T Consensus 81 ~~~g~P~v~l~g~~~----~~-~~~-----~~~~~i~v-SiSH~~~~a~A~vi~~ 124 (126)
T PRK14656 81 DQLGKPELRLYGRAL----EL-FAQ-----AGLSKTFL-SLSHDGGCAVAMVVLE 124 (126)
T ss_pred CCCCCeEEEECHHHH----HH-HHH-----cCCCeEEE-EEEcCCCcEEEEEEEE
Confidence 776777777654211 00 010 12355666 6788999999999865
No 9
>TIGR00556 pantethn_trn phosphopantethiene--protein transferase domain. This alignment models a domain active in transferring the phophopantethiene prosthetic group to its attachment site on enzymes and carrier proteins. Many members of this family are small proteins that act on the acyl carrier protein involved in fatty acid biosynthesis. Some members are domains of larger proteins involved specialized pathways for the synthesis of unusual molecules including polyketides, atypical fatty acids, and antibiotics.
Probab=99.39 E-value=2.9e-12 Score=107.05 Aligned_cols=118 Identities=26% Similarity=0.342 Sum_probs=81.2
Q ss_pred cccccchhhhhhhhhhhHH----HHHHhcCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhcCCCCCC--CCCceEE
Q 020190 154 VPIGIDVEEKQRRLKNKIL----AFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSA--APFNTFT 227 (329)
Q Consensus 154 ~~vGVDIE~~~~~~~~~~~----~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~--~~l~~~~ 227 (329)
..||||||.+.+. .... .+++++||+.|++++...+. ..+...|+.+||+|||++||+|.|+.. .+++.++
T Consensus 3 ~~iGiDIe~i~~~--~~~~~~~~~~~~~~~~~~E~~~~~~~~~-~~~~~~~~~~wsaKEA~~Ka~g~g~~~~~~~~~~~~ 79 (128)
T TIGR00556 3 VGIGIDIVEIKRI--AEQVERSGTFAERFFTPSEIEDYCKLSP-KSQTESLAGRWAAKEAFIKALGKGISLGELLFTDIE 79 (128)
T ss_pred cceeeeEEEehHH--HHHHHhhhhHHHHcCCHHHHHHHHhCCh-hHHHHHHHHHHHHHHHHHHHhccCcCCCCCccceEE
Confidence 4799999998763 2223 67899999999998877652 345668999999999999999999871 2588888
Q ss_pred EEecCCCceeEEeccCCccccchhhccCCCCCCCCCCCEEEEEeecCCCeEEEEEEec
Q 020190 228 IRARVVKMGGFHHFDTQHSEASEIVVESSDDPENLTRNWQFALLDLAGSHYAAICIEK 285 (329)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~l~~~~~~Ava~~~ 285 (329)
+..++.+.+.+.+.+.. .+.... .....|.. ++..+.+|+.|.|+-.
T Consensus 80 i~~~~~g~p~~~l~~~~-----~~~~~~-----~~~~~~~l-Sish~~~~a~a~~i~~ 126 (128)
T TIGR00556 80 IVKDLKGAPRVCLIGEA-----AKDAEK-----LGVCSVHV-SISHDKEYAAAQVILE 126 (128)
T ss_pred EEeCCCCCcEEEECHHH-----HHHHHH-----cCCCeEEE-EEEcCCCcEEEEEEEE
Confidence 88776555555443210 000010 11233444 5677889999888653
No 10
>PRK14657 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.35 E-value=5.3e-12 Score=105.08 Aligned_cols=113 Identities=25% Similarity=0.250 Sum_probs=81.1
Q ss_pred ccccchhhhhhhhhhhH-----HHHHHhcCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhcCCCCC-CCCCceEEE
Q 020190 155 PIGIDVEEKQRRLKNKI-----LAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFS-AAPFNTFTI 228 (329)
Q Consensus 155 ~vGVDIE~~~~~~~~~~-----~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~-~~~l~~~~~ 228 (329)
.|||||+.+.+-. .. ..+.+++||++|++++...+ ...+...|++|||++||+|+|+. ...++++++
T Consensus 4 giGvDIv~i~ri~--~~~~~~~~~f~~rift~~E~~~~~~~~-----~~~lA~rwAaKEA~~KAlg~g~~~~~~~~diei 76 (123)
T PRK14657 4 GLGIDITELDRIA--KALERFGDRFARRILHPAELAAMPAAP-----VAFLAGRFAAKEAAVKALGTGFSQGIGPRDIEV 76 (123)
T ss_pred EEEEeEEEcHHHH--HHHHhcChhHHHhCCCHHHHHHHHcCc-----HHHHHHHHHHHHHHHHHhccCcCCCCCceeEEE
Confidence 4899999987631 22 35789999999999987642 35666799999999999999986 134589999
Q ss_pred EecCCCceeEEeccCCccccchhhccCCCCCCCCCCCEEEEEeecCCCeEEEEEEec
Q 020190 229 RARVVKMGGFHHFDTQHSEASEIVVESSDDPENLTRNWQFALLDLAGSHYAAICIEK 285 (329)
Q Consensus 229 ~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~l~~~~~~Ava~~~ 285 (329)
..++.+.+.+.+.+...... .. .....|.+ ++..+.+|.+|+|+-.
T Consensus 77 ~~~~~g~P~v~l~g~~~~~~-----~~-----~~~~~~~v-SiSH~~~~aiA~vi~~ 122 (123)
T PRK14657 77 GVLPAGAPQLVLHGKALARA-----EA-----LGATSTHV-SLTHGRDTAAAVVVLE 122 (123)
T ss_pred EECCCCCcEEEEChHHHHHH-----HH-----cCCCeEEE-EEEcCCCcEEEEEEEe
Confidence 88777777777654211001 11 12355666 6788899999999753
No 11
>PRK14660 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.32 E-value=1.5e-11 Score=102.71 Aligned_cols=117 Identities=20% Similarity=0.238 Sum_probs=83.8
Q ss_pred ccccchhhhhhhh--hhh-HHHHHHhcCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhcCCCCC-CCCCceEEEEe
Q 020190 155 PIGIDVEEKQRRL--KNK-ILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFS-AAPFNTFTIRA 230 (329)
Q Consensus 155 ~vGVDIE~~~~~~--~~~-~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~-~~~l~~~~~~~ 230 (329)
.|||||..+.+-. ... ...+++++||++|++++.... .+.+.|...|++|||+.||+|+|+. +..++++++..
T Consensus 4 giG~DIv~i~Ri~~~~~~~~~~fl~rift~~E~~~~~~~~---~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~diei~~ 80 (125)
T PRK14660 4 GTGVDIVEVERIARSIERHGDRFLRRIYTPGEIAYCTSKA---NRAERLAARFAAKEAVMKAIGTGLREGVRWTDFEVCR 80 (125)
T ss_pred EEeEeEEEcHHHHHHHHHhhhHHHHHhCCHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHhccCcCCCccceEEEEEE
Confidence 4899998877531 111 236789999999999997543 2467888999999999999999986 24688999988
Q ss_pred cCCCceeEEeccCCccccchhhccCCCCCCCCCCCEEEEEeecCCCeEEEEEEec
Q 020190 231 RVVKMGGFHHFDTQHSEASEIVVESSDDPENLTRNWQFALLDLAGSHYAAICIEK 285 (329)
Q Consensus 231 ~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~l~~~~~~Ava~~~ 285 (329)
++.+.+.+.+.+... .+ ... .....|.+ ++..+.+|.+|+|+-.
T Consensus 81 ~~~G~P~v~l~g~~~----~~-~~~-----~~~~~i~l-SiSH~~~~A~A~vi~~ 124 (125)
T PRK14660 81 DERGRPTVRLHGRAA----EI-AAA-----LGATRIHL-SLSHTQEYAVAQVILE 124 (125)
T ss_pred CCCCCceEEEChHHH----HH-HHH-----cCCCeEEE-EEEcCCCcEEEEEEEe
Confidence 877778887754211 11 010 12345665 6788999999999753
No 12
>PRK14661 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.31 E-value=1.7e-11 Score=106.35 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=79.0
Q ss_pred ccccchhhhhhhhhhhHHHHHHhcCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEecCCC
Q 020190 155 PIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRARVVK 234 (329)
Q Consensus 155 ~vGVDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~~~l~~~~~~~~~~~ 234 (329)
.|||||+.+.+- . ..+++++||++|++++.+.. ++.+.|+..|++|||++||+|+|+....++++++. .+.+
T Consensus 4 GIGiDIveI~Ri-~---e~Fl~RifT~~E~~~~~~~~---~~~~~lAgrwAaKEAv~KAlGtGl~~vsf~DIEI~-~~~G 75 (169)
T PRK14661 4 GVGIDVLEVERV-P---EKFAERILGESEKRLFLTRK---RRREFIAGRFALKEAFFKALGTGLNGHSFTDVEFL-ESNG 75 (169)
T ss_pred EEEEeEEEEEch-H---HHHHHHcCCHHHHHHHHhcc---chhhhHHHHhHHHHHHHHHccCCcCCccceEEEEE-cCCC
Confidence 589999998863 2 36889999999999987644 24567889999999999999999975679999995 4445
Q ss_pred ceeEEeccCCccccchhhccCCCCCCCCCCCEEEEEeecCCCeEEEEEEeccC
Q 020190 235 MGGFHHFDTQHSEASEIVVESSDDPENLTRNWQFALLDLAGSHYAAICIEKEN 287 (329)
Q Consensus 235 ~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~l~~~~~~Ava~~~~~ 287 (329)
.+.+.+.+.. .....+++ ++..+. |++|+|+-...
T Consensus 76 ~P~v~l~g~~----------------~~~~~i~V-SISHd~-yAiA~VIle~~ 110 (169)
T PRK14661 76 KPVLCVHKDF----------------GFFNYAHV-SLSHDR-FAVALVVLEKR 110 (169)
T ss_pred CeEEEEcccc----------------CccceEEE-EEeccc-cEEEEEEEEec
Confidence 5666553210 11244555 456666 99999987653
No 13
>PRK14658 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.28 E-value=3.4e-11 Score=98.96 Aligned_cols=107 Identities=18% Similarity=0.219 Sum_probs=76.0
Q ss_pred ccccchhhhhhhhhhhHHHHHHhcCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEecCCC
Q 020190 155 PIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRARVVK 234 (329)
Q Consensus 155 ~vGVDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~~~l~~~~~~~~~~~ 234 (329)
.||+||..+.+-. ..-..+++++||++|++..........+.+.+...|++|||+.||+|+|+. ++++++..++.+
T Consensus 4 ~IGiDIvei~Ri~-~~~~~Fl~Rilt~~E~~~~~~~~~~~~~~~~lAgRfAaKEA~~KAlgtg~~---~~dieI~~~~~G 79 (115)
T PRK14658 4 VHGIDIIEWNREE-LNNPLFAKRILIDNELEYYFQLNSSREKKRYLASVFACKEAVMKALKLKYG---YGDILILKTENQ 79 (115)
T ss_pred eEEEEEEEehHHh-hhChhHHHHcCCHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhCCCCC---ceEEEEEECCCC
Confidence 5899998877531 122368899999999999875321122456677899999999999999985 799999877654
Q ss_pred ceeEEeccCCccccchhhccCCCCCCCCCCCEEEEEeecCCCeEEEEEEec
Q 020190 235 MGGFHHFDTQHSEASEIVVESSDDPENLTRNWQFALLDLAGSHYAAICIEK 285 (329)
Q Consensus 235 ~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~l~~~~~~Ava~~~ 285 (329)
.+.+ + .. ....++.+ ++..+.+|++|+|+--
T Consensus 80 ~p~~-~-------------~~-----~~~~~i~l-SISH~~~~AiA~vI~~ 110 (115)
T PRK14658 80 RQVY-L-------------NK-----ILIKELEL-SISYTETYIVASVVGL 110 (115)
T ss_pred CeEE-E-------------ec-----CCCcEEEE-EEEcCCCeEEEEEEEE
Confidence 4332 2 10 12234555 6788899999999754
No 14
>TIGR00516 acpS holo-[acyl-carrier-protein] synthase. Formerly dpj. This enzyme adds the prosthetic group, phosphopantethiene, to the acyl carrier protein (ACP) apo-enzyme to generate the holo-enzyme. Related phosphopantethiene--protein transferases also exist. There is an orthologous domain in eukaryotic proteins.
Probab=99.25 E-value=5.3e-11 Score=98.82 Aligned_cols=113 Identities=23% Similarity=0.232 Sum_probs=80.5
Q ss_pred ccccchhhhhhhhh---hhHHHHHHhcCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCceEEEEe
Q 020190 155 PIGIDVEEKQRRLK---NKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSA-APFNTFTIRA 230 (329)
Q Consensus 155 ~vGVDIE~~~~~~~---~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~-~~l~~~~~~~ 230 (329)
.||+||..+.+-.. .....+++++||+.|++.+...++ +.+.|...|++|||++||+|.|+.. ..++++++..
T Consensus 3 giG~DIv~i~Ri~~~~~~~~~~f~~ri~t~~E~~~~~~~~~---~~~~lA~rwAaKEA~~KAlg~g~~~~~~~~diei~~ 79 (121)
T TIGR00516 3 GIGLDIVEIARIESMAGRQKMRFAERILSRSELDQYKELSE---KRKFLAGRFAAKEAFSKAFGTGIGRQLSFQDIEIRK 79 (121)
T ss_pred EEEEeEEEHHHHHHHHHhcccchHHHcCCHHHHHHHHhcCc---HHHHHHHHhHHHHHHHHHhccccCCCccceEEEEEE
Confidence 48999998875210 011368899999999999987653 4567789999999999999999862 3578999988
Q ss_pred cCCCceeEEeccCCccccchhhccCCCCCCCCCCCEEEEEeecCCCeEEEEEEe
Q 020190 231 RVVKMGGFHHFDTQHSEASEIVVESSDDPENLTRNWQFALLDLAGSHYAAICIE 284 (329)
Q Consensus 231 ~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~l~~~~~~Ava~~ 284 (329)
++.+.+.+.+.. .+ ... .....|.+ ++..+.+|.+|+|+-
T Consensus 80 ~~~G~P~v~~~~-------~~-~~~-----~~~~~i~v-SiSH~~~~A~A~vi~ 119 (121)
T TIGR00516 80 DQNGKPLITLSY-------II-CTK-----LSIAAVHV-SITHTKEYAAAQVVI 119 (121)
T ss_pred CCCcCeEEEEcH-------HH-HHH-----cCCCEEEE-EEEcCCCcEEEEEEE
Confidence 777777665421 11 110 12244544 678889999999974
No 15
>PRK00070 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.21 E-value=8.1e-11 Score=97.89 Aligned_cols=117 Identities=22% Similarity=0.213 Sum_probs=81.1
Q ss_pred ccccchhhhhhhhh---hhHHHHHHhcCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCceEEEEe
Q 020190 155 PIGIDVEEKQRRLK---NKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSA-APFNTFTIRA 230 (329)
Q Consensus 155 ~vGVDIE~~~~~~~---~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~-~~l~~~~~~~ 230 (329)
.|||||+.+.+... ..-..+++++||++|++++.... .+.+.|...|++|||+.|++|.|+.. ..++++++..
T Consensus 4 giGiDi~~i~r~~~~~~~~~~~~~~r~l~~~E~~~~~~~~---~~~~~la~r~aaKEA~~Kalg~~~~~~~~~~~i~i~~ 80 (126)
T PRK00070 4 GIGIDIVEIERIEKALERTGDRFAERVLTPKERAKFKSGK---RPAEFLAGRFAAKEAFSKALGTGIGKGVSFRDIEVLN 80 (126)
T ss_pred EEEEeEEEhHHHHHHHHhcchhHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHhccCcccceeeeEEEEEE
Confidence 48999999876310 01136789999999999995432 35577788999999999999999861 2478899887
Q ss_pred cCCCceeEEeccCCccccchhhccCCCCCCCCCCCEEEEEeecCCCeEEEEEEec
Q 020190 231 RVVKMGGFHHFDTQHSEASEIVVESSDDPENLTRNWQFALLDLAGSHYAAICIEK 285 (329)
Q Consensus 231 ~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~l~~~~~~Ava~~~ 285 (329)
++.+.+.+.+.+... .. ... .....+.+ ++..+.+|.+|+|+-.
T Consensus 81 ~~~G~P~l~l~g~~~----~~-~~~-----~~~~~~~i-SISH~~~~A~A~vi~~ 124 (126)
T PRK00070 81 DELGKPIVRLSGEAA----ER-LEK-----LGGARIHL-SISHDGDYAVAFVILE 124 (126)
T ss_pred CCCCCcEEEEChHHH----HH-HHH-----cCCCEEEE-EEEcCCCcEEEEEEEE
Confidence 776666666533110 00 000 12234555 6788999999999864
No 16
>COG0736 AcpS Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism]
Probab=99.16 E-value=1.6e-10 Score=96.20 Aligned_cols=117 Identities=19% Similarity=0.205 Sum_probs=82.4
Q ss_pred ccccchhhhhhhh--hhhH-HHHHHhcCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCceEEEEe
Q 020190 155 PIGIDVEEKQRRL--KNKI-LAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSA-APFNTFTIRA 230 (329)
Q Consensus 155 ~vGVDIE~~~~~~--~~~~-~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~-~~l~~~~~~~ 230 (329)
.|||||..+.+-. .... ..+++++||+.|++........ .+.+.-.|++|||+.||+|+|+.. ..++++++.-
T Consensus 4 gIG~DiveI~Ri~~~~~r~g~~F~erilt~~E~~~~~~~~~~---~~~lAgrfAaKEA~~KAlgtgi~~~~~~~diei~~ 80 (127)
T COG0736 4 GIGIDIVEIERIEKALERFGERFAERILTEEELEYYEKLKSR---AEFLAGRFAAKEAVSKALGTGIGKGVSFKDIEILN 80 (127)
T ss_pred EEeeeEEEeHHHHHHHhhccchHHHHhCCHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHhccCcccceeeeeEEEEE
Confidence 5899998877521 1111 3689999999999999987642 466678999999999999999983 4689999988
Q ss_pred cCCCceeEEeccCCccccchhhccCCCCCCCCCCCEEE-EEeecCCCeEEEEEEecc
Q 020190 231 RVVKMGGFHHFDTQHSEASEIVVESSDDPENLTRNWQF-ALLDLAGSHYAAICIEKE 286 (329)
Q Consensus 231 ~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~W~~-~~~~l~~~~~~Ava~~~~ 286 (329)
++.+.+.+.+++... .... ....+.+ .++..+.+|++|+|+-..
T Consensus 81 d~~g~P~v~~~~~~~----~~~~--------~~~~~~i~lSISh~~~yA~A~vi~e~ 125 (127)
T COG0736 81 DELGKPTVRLSGEAA----KALE--------KLGVANIHLSISHDRDYAIAVVILEK 125 (127)
T ss_pred cCCCCcEEEECHHHH----HHHH--------hcCCceEEEEEEcCCCeEEEEEEEEe
Confidence 877777887754221 1000 1111333 345678889999998654
No 17
>PRK14663 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.16 E-value=5.7e-10 Score=91.93 Aligned_cols=110 Identities=18% Similarity=0.242 Sum_probs=76.9
Q ss_pred cchhhhhhhhhhhHHHHHHhcCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhcCCCCC-CCCCceEEEEecCCCce
Q 020190 158 IDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFS-AAPFNTFTIRARVVKMG 236 (329)
Q Consensus 158 VDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~-~~~l~~~~~~~~~~~~~ 236 (329)
|||+++.+.....-..+.+++||++|+++..+... ..+.|...|++|||+.||+|+|+. +..++++++..++.+.+
T Consensus 4 v~i~Ri~~~~~~~~~~f~~rift~~E~~~~~~~~~---~~~~lAgrfAaKEA~~KAlg~g~~~~i~~~dieI~~~~~G~P 80 (116)
T PRK14663 4 VDLERIEKAYNRYGVKFLEKILTPEEIELCLQKPQ---PVASIAGRFAAKEAVVKALGTGFSQGVHWKSFAILNDAAGRP 80 (116)
T ss_pred EEHHHHHHHHHhhchHHHHHhCCHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHccCCCCCceeeEEEEEECCCCCc
Confidence 34555553221111467899999999999876543 346788899999999999999985 24689999988877777
Q ss_pred eEEeccCCccccchhhccCCCCCCCCCCCEEEEEeecCCCeEEEEEEec
Q 020190 237 GFHHFDTQHSEASEIVVESSDDPENLTRNWQFALLDLAGSHYAAICIEK 285 (329)
Q Consensus 237 ~~~l~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~l~~~~~~Ava~~~ 285 (329)
.+.+.+.. .. .....+++ ++..+.+|.+|+|+-.
T Consensus 81 ~i~l~g~~--------~~------~~~~~i~v-SiSH~~~~a~A~vi~~ 114 (116)
T PRK14663 81 FVKVIDDG--------CL------PPGCVIKI-SISHDRHSAVATALIE 114 (116)
T ss_pred EEEEchhH--------hh------cCCCEEEE-EEEcCCCeEEEEEEEE
Confidence 77664321 00 11234554 6788999999999864
No 18
>PRK14662 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.10 E-value=4.5e-10 Score=93.09 Aligned_cols=112 Identities=18% Similarity=0.118 Sum_probs=77.5
Q ss_pred ccccchhhhhhhh--hh-hHHHHHHhcCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEec
Q 020190 155 PIGIDVEEKQRRL--KN-KILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRAR 231 (329)
Q Consensus 155 ~vGVDIE~~~~~~--~~-~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~~~l~~~~~~~~ 231 (329)
.||+||..+.+-. .. .-..+++++||++|+++.....+ ..+.+.-.|++|||+.||+|+|+. ++++++..+
T Consensus 4 gIG~DIv~i~Ri~~~~~r~~~~Fl~Ri~t~~E~~~~~~~~~---~~~~lAgrfAaKEA~~KAlg~~~~---~~diei~~~ 77 (120)
T PRK14662 4 AIGHDLVEIARIRRVLERHGERALERLFHPEELAYCLAKAD---PAPSLAARFAAKEAFQKCWPESHG---WREVWVERE 77 (120)
T ss_pred EEEeeeEEhHHHHHHHHhhhhHHHHHcCCHHHHHHHHhcCC---cchhhhhHhHHHHHHHHHhcCCCC---ceEEEEEcC
Confidence 4899998777521 01 12367899999999999876443 345677899999999999999865 799999654
Q ss_pred CCCceeEEeccCCccccchhhccCCCCCCCCCCCEEEEEeecCCCeEEEEEEec
Q 020190 232 VVKMGGFHHFDTQHSEASEIVVESSDDPENLTRNWQFALLDLAGSHYAAICIEK 285 (329)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~l~~~~~~Ava~~~ 285 (329)
.+.+.+.+.+... .. .. .....+ ..++..+.+|.+|+|+-.
T Consensus 78 -~G~P~v~l~g~~~----~~-~~------~~~~~~-~lSiSH~~~~A~A~vi~e 118 (120)
T PRK14662 78 -GARPVLGFAPKIA----AR-ME------EEGWVA-HLSLSHEKEHALAVVVLE 118 (120)
T ss_pred -CCCcEEEECHHHH----HH-HH------hcCCeE-EEEEecCCCeEEEEEEEE
Confidence 5667777654211 10 01 011234 447788999999999754
No 19
>PRK14658 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.92 E-value=6.7e-09 Score=85.42 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=67.9
Q ss_pred HhccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCceeEecCCCCccEEeccCCCCCCCCCceEEec
Q 020190 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWENGDKWCPPPLHFNIS 140 (329)
Q Consensus 61 ~~~~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~g~~p~~i~~~~~~~GKP~l~~~~~~~~~~~~l~fSIS 140 (329)
+.++|+++|++.+...+...++.+||+||..+|+++... .|.|+...+|++.+++.|+|++.... +...+++|||
T Consensus 23 l~Rilt~~E~~~~~~~~~~~~~~~~lAgRfAaKEA~~KA-lgtg~~~~dieI~~~~~G~p~~~~~~----~~~~i~lSIS 97 (115)
T PRK14658 23 AKRILIDNELEYYFQLNSSREKKRYLASVFACKEAVMKA-LKLKYGYGDILILKTENQRQVYLNKI----LIKELELSIS 97 (115)
T ss_pred HHHcCCHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-hCCCCCceEEEEEECCCCCeEEEecC----CCcEEEEEEE
Confidence 457999999999886654445688999999999999988 45677899999999999999986321 2357899999
Q ss_pred cCCCcee
Q 020190 141 HTSSLVA 147 (329)
Q Consensus 141 Hs~~~v~ 147 (329)
|++++++
T Consensus 98 H~~~~Ai 104 (115)
T PRK14658 98 YTETYIV 104 (115)
T ss_pred cCCCeEE
Confidence 9999975
No 20
>PRK00070 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.90 E-value=5e-09 Score=87.09 Aligned_cols=86 Identities=20% Similarity=0.284 Sum_probs=64.6
Q ss_pred HhccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcCC----CCCCceeEecCCCCccEEeccCCC-----CCC
Q 020190 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQ----VNPRSLKFKKTIYGKPEVDWENGD-----KWC 131 (329)
Q Consensus 61 ~~~~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~g----~~p~~i~~~~~~~GKP~l~~~~~~-----~~~ 131 (329)
+.++|+++|++++. ...++.+|+++|.++|+++.+++ +.| +.+.++++.++++|||++...... ..+
T Consensus 27 ~~r~l~~~E~~~~~---~~~~~~~~la~r~aaKEA~~Kal-g~~~~~~~~~~~i~i~~~~~G~P~l~l~g~~~~~~~~~~ 102 (126)
T PRK00070 27 AERVLTPKERAKFK---SGKRPAEFLAGRFAAKEAFSKAL-GTGIGKGVSFRDIEVLNDELGKPIVRLSGEAAERLEKLG 102 (126)
T ss_pred HHHcCCHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHh-ccCcccceeeeEEEEEECCCCCcEEEEChHHHHHHHHcC
Confidence 45799999999983 33567799999999999998872 332 347899999999999999732100 002
Q ss_pred CCCceEEeccCCCceeEEE
Q 020190 132 PPPLHFNISHTSSLVACGV 150 (329)
Q Consensus 132 ~~~l~fSISHs~~~v~~av 150 (329)
...+++||||+++++++.+
T Consensus 103 ~~~~~iSISH~~~~A~A~v 121 (126)
T PRK00070 103 GARIHLSISHDGDYAVAFV 121 (126)
T ss_pred CCEEEEEEEcCCCcEEEEE
Confidence 3568999999999986544
No 21
>PRK14659 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.53 E-value=6.3e-07 Score=74.44 Aligned_cols=86 Identities=9% Similarity=0.247 Sum_probs=67.1
Q ss_pred HhccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcCC----CCCCceeEecCCCCccEEeccCCCCCCCCCce
Q 020190 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQ----VNPRSLKFKKTIYGKPEVDWENGDKWCPPPLH 136 (329)
Q Consensus 61 ~~~~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~g----~~p~~i~~~~~~~GKP~l~~~~~~~~~~~~l~ 136 (329)
+.++|+++|+..+.++.....+.+++++|..+|+++... .|.| +.+.++++..++.|+|++...... ....++
T Consensus 27 ~~r~ft~~E~~~~~~~~~~~~~~~~la~rwaaKEA~~KA-lg~g~~~~~~~~di~i~~~~~g~P~v~l~~~~--~~~~i~ 103 (122)
T PRK14659 27 LNRVFSEKEIEDSLKYTSQEARARHFAKRFAAKEAYVKA-LGTGFGRGIKMKDISVYNDLYGKPQITVSKSN--IDHKIE 103 (122)
T ss_pred HHhcCCHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH-hccCcCcCccccEEEEEECCCCCeEEEECCcc--cccEEE
Confidence 457999999999877655556788999999999999887 3333 446889999999999999753211 124689
Q ss_pred EEeccCCCceeEE
Q 020190 137 FNISHTSSLVACG 149 (329)
Q Consensus 137 fSISHs~~~v~~a 149 (329)
.||||+++|++..
T Consensus 104 vSiSh~~~ya~A~ 116 (122)
T PRK14659 104 LSLSDDGDYAIAF 116 (122)
T ss_pred EEEEcCCCcEEEE
Confidence 9999999998643
No 22
>PRK14660 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.50 E-value=5.1e-07 Score=75.37 Aligned_cols=86 Identities=16% Similarity=0.226 Sum_probs=65.2
Q ss_pred HhccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcC----CCCCCceeEecCCCCccEEeccCC-----CCCC
Q 020190 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNC----QVNPRSLKFKKTIYGKPEVDWENG-----DKWC 131 (329)
Q Consensus 61 ~~~~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~----g~~p~~i~~~~~~~GKP~l~~~~~-----~~~~ 131 (329)
+.+.|+++|++.+... .++.+++++|..+|+++...+ +. ++.+.+|++.+++.|||++..... ...+
T Consensus 27 l~rift~~E~~~~~~~---~~~~~~lAgrfAaKEA~~KAl-g~g~~~~~~~~diei~~~~~G~P~v~l~g~~~~~~~~~~ 102 (125)
T PRK14660 27 LRRIYTPGEIAYCTSK---ANRAERLAARFAAKEAVMKAI-GTGLREGVRWTDFEVCRDERGRPTVRLHGRAAEIAAALG 102 (125)
T ss_pred HHHhCCHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHh-ccCcCCCccceEEEEEECCCCCceEEEChHHHHHHHHcC
Confidence 4568999999988643 346789999999999998873 33 356799999999999999964321 0012
Q ss_pred CCCceEEeccCCCceeEEE
Q 020190 132 PPPLHFNISHTSSLVACGV 150 (329)
Q Consensus 132 ~~~l~fSISHs~~~v~~av 150 (329)
...+++||||+++|++..|
T Consensus 103 ~~~i~lSiSH~~~~A~A~v 121 (125)
T PRK14660 103 ATRIHLSLSHTQEYAVAQV 121 (125)
T ss_pred CCeEEEEEEcCCCcEEEEE
Confidence 3568999999999986433
No 23
>COG0736 AcpS Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism]
Probab=98.46 E-value=6.4e-07 Score=74.72 Aligned_cols=83 Identities=16% Similarity=0.250 Sum_probs=64.1
Q ss_pred HhccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcCC----CCCCceeEecCCCCccEEeccCCCC-----CC
Q 020190 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQ----VNPRSLKFKKTIYGKPEVDWENGDK-----WC 131 (329)
Q Consensus 61 ~~~~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~g----~~p~~i~~~~~~~GKP~l~~~~~~~-----~~ 131 (329)
..++|++.|++.+.+...+ .+||++|..+|+++...+ +.| +...+|++.+++.|||++....... .+
T Consensus 27 ~erilt~~E~~~~~~~~~~---~~~lAgrfAaKEA~~KAl-gtgi~~~~~~~diei~~d~~g~P~v~~~~~~~~~~~~~~ 102 (127)
T COG0736 27 AERILTEEELEYYEKLKSR---AEFLAGRFAAKEAVSKAL-GTGIGKGVSFKDIEILNDELGKPTVRLSGEAAKALEKLG 102 (127)
T ss_pred HHHhCCHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHh-ccCcccceeeeeEEEEEcCCCCcEEEECHHHHHHHHhcC
Confidence 3468999999999887543 899999999999999873 333 3558899999999999998631000 01
Q ss_pred CCCceEEeccCCCcee
Q 020190 132 PPPLHFNISHTSSLVA 147 (329)
Q Consensus 132 ~~~l~fSISHs~~~v~ 147 (329)
...++.||||+.+|++
T Consensus 103 ~~~i~lSISh~~~yA~ 118 (127)
T COG0736 103 VANIHLSISHDRDYAI 118 (127)
T ss_pred CceEEEEEEcCCCeEE
Confidence 1359999999999975
No 24
>TIGR00516 acpS holo-[acyl-carrier-protein] synthase. Formerly dpj. This enzyme adds the prosthetic group, phosphopantethiene, to the acyl carrier protein (ACP) apo-enzyme to generate the holo-enzyme. Related phosphopantethiene--protein transferases also exist. There is an orthologous domain in eukaryotic proteins.
Probab=98.43 E-value=1.3e-06 Score=72.44 Aligned_cols=86 Identities=21% Similarity=0.280 Sum_probs=64.7
Q ss_pred HhccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcC----CCCCCceeEecCCCCccEEeccCC--CCCCCCC
Q 020190 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNC----QVNPRSLKFKKTIYGKPEVDWENG--DKWCPPP 134 (329)
Q Consensus 61 ~~~~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~----g~~p~~i~~~~~~~GKP~l~~~~~--~~~~~~~ 134 (329)
+.++|+++|++.+.+.. ++.+++++|..+|+++...+ +. ++...++++.+++.|+|++..... ...+...
T Consensus 26 ~~ri~t~~E~~~~~~~~---~~~~~lA~rwAaKEA~~KAl-g~g~~~~~~~~diei~~~~~G~P~v~~~~~~~~~~~~~~ 101 (121)
T TIGR00516 26 AERILSRSELDQYKELS---EKRKFLAGRFAAKEAFSKAF-GTGIGRQLSFQDIEIRKDQNGKPLITLSYIICTKLSIAA 101 (121)
T ss_pred HHHcCCHHHHHHHHhcC---cHHHHHHHHhHHHHHHHHHh-ccccCCCccceEEEEEECCCcCeEEEEcHHHHHHcCCCE
Confidence 35799999999886553 46899999999999998873 33 346689999999999999963110 0012356
Q ss_pred ceEEeccCCCceeEEE
Q 020190 135 LHFNISHTSSLVACGV 150 (329)
Q Consensus 135 l~fSISHs~~~v~~av 150 (329)
++.||||+++|+++.+
T Consensus 102 i~vSiSH~~~~A~A~v 117 (121)
T TIGR00516 102 VHVSITHTKEYAAAQV 117 (121)
T ss_pred EEEEEEcCCCcEEEEE
Confidence 8999999999986443
No 25
>PRK14662 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.39 E-value=1.4e-06 Score=72.16 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=63.5
Q ss_pred HhccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCceeEecCCCCccEEeccCCC----CCCCCCce
Q 020190 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWENGD----KWCPPPLH 136 (329)
Q Consensus 61 ~~~~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~g~~p~~i~~~~~~~GKP~l~~~~~~----~~~~~~l~ 136 (329)
+.++|+++|++.+.... ++.+++++|...|+++... .+.|+.+.+|++.++ .|||++...... ......++
T Consensus 27 l~Ri~t~~E~~~~~~~~---~~~~~lAgrfAaKEA~~KA-lg~~~~~~diei~~~-~G~P~v~l~g~~~~~~~~~~~~~~ 101 (120)
T PRK14662 27 LERLFHPEELAYCLAKA---DPAPSLAARFAAKEAFQKC-WPESHGWREVWVERE-GARPVLGFAPKIAARMEEEGWVAH 101 (120)
T ss_pred HHHcCCHHHHHHHHhcC---CcchhhhhHhHHHHHHHHH-hcCCCCceEEEEEcC-CCCcEEEECHHHHHHHHhcCCeEE
Confidence 35799999999876433 3568999999999999987 456788999999886 899999642100 00113679
Q ss_pred EEeccCCCceeEE
Q 020190 137 FNISHTSSLVACG 149 (329)
Q Consensus 137 fSISHs~~~v~~a 149 (329)
+||||+++|++..
T Consensus 102 lSiSH~~~~A~A~ 114 (120)
T PRK14662 102 LSLSHEKEHALAV 114 (120)
T ss_pred EEEecCCCeEEEE
Confidence 9999999997643
No 26
>PRK14663 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.39 E-value=2e-06 Score=70.79 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=63.5
Q ss_pred HhccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcC----CCCCCceeEecCCCCccEEeccCCCC-CCCCCc
Q 020190 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNC----QVNPRSLKFKKTIYGKPEVDWENGDK-WCPPPL 135 (329)
Q Consensus 61 ~~~~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~----g~~p~~i~~~~~~~GKP~l~~~~~~~-~~~~~l 135 (329)
+.++|+++|++.+.+... ..++++||..+|+++...+ +. ++.+.+|++.+++.|+|++....... .....+
T Consensus 21 ~~rift~~E~~~~~~~~~---~~~~lAgrfAaKEA~~KAl-g~g~~~~i~~~dieI~~~~~G~P~i~l~g~~~~~~~~~i 96 (116)
T PRK14663 21 LEKILTPEEIELCLQKPQ---PVASIAGRFAAKEAVVKAL-GTGFSQGVHWKSFAILNDAAGRPFVKVIDDGCLPPGCVI 96 (116)
T ss_pred HHHhCCHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHH-ccCCCCCceeeEEEEEECCCCCcEEEEchhHhhcCCCEE
Confidence 357999999998865433 4689999999999998873 33 34678999999999999996432100 012458
Q ss_pred eEEeccCCCceeEE
Q 020190 136 HFNISHTSSLVACG 149 (329)
Q Consensus 136 ~fSISHs~~~v~~a 149 (329)
++||||+++|++..
T Consensus 97 ~vSiSH~~~~a~A~ 110 (116)
T PRK14663 97 KISISHDRHSAVAT 110 (116)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999997643
No 27
>PRK14657 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.15 E-value=9.9e-06 Score=67.41 Aligned_cols=83 Identities=14% Similarity=0.216 Sum_probs=62.9
Q ss_pred HhccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcC----CCCCCceeEecCCCCccEEeccCC-----CCCC
Q 020190 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNC----QVNPRSLKFKKTIYGKPEVDWENG-----DKWC 131 (329)
Q Consensus 61 ~~~~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~----g~~p~~i~~~~~~~GKP~l~~~~~-----~~~~ 131 (329)
+.++++++|++.+.+. ..+++++|...|+++...+ +. ++.+.+|++.++++|+|++..... ...+
T Consensus 27 ~~rift~~E~~~~~~~-----~~~~lA~rwAaKEA~~KAl-g~g~~~~~~~~diei~~~~~g~P~v~l~g~~~~~~~~~~ 100 (123)
T PRK14657 27 ARRILHPAELAAMPAA-----PVAFLAGRFAAKEAAVKAL-GTGFSQGIGPRDIEVGVLPAGAPQLVLHGKALARAEALG 100 (123)
T ss_pred HHhCCCHHHHHHHHcC-----cHHHHHHHHHHHHHHHHHh-ccCcCCCCCceeEEEEECCCCCcEEEEChHHHHHHHHcC
Confidence 4579999999998653 4689999999999988773 32 356789999999999999963210 0113
Q ss_pred CCCceEEeccCCCceeEE
Q 020190 132 PPPLHFNISHTSSLVACG 149 (329)
Q Consensus 132 ~~~l~fSISHs~~~v~~a 149 (329)
...+++||||+++|+++.
T Consensus 101 ~~~~~vSiSH~~~~aiA~ 118 (123)
T PRK14657 101 ATSTHVSLTHGRDTAAAV 118 (123)
T ss_pred CCeEEEEEEcCCCcEEEE
Confidence 456899999999997643
No 28
>PRK14656 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.12 E-value=1.3e-05 Score=66.98 Aligned_cols=85 Identities=11% Similarity=0.151 Sum_probs=63.6
Q ss_pred HhccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcC----CCCCCceeEecCCCCccEEeccCC-----CCCC
Q 020190 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNC----QVNPRSLKFKKTIYGKPEVDWENG-----DKWC 131 (329)
Q Consensus 61 ~~~~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~----g~~p~~i~~~~~~~GKP~l~~~~~-----~~~~ 131 (329)
+.+.|+++|++.+.... +..+++.+|..+|+++...+ +. ++...++++.+++.|+|++..... ...+
T Consensus 27 ~~rift~~E~~~~~~~~---~~~~~~a~rwAaKEA~~KAl-g~g~~~~~~~~diei~~~~~g~P~v~l~g~~~~~~~~~~ 102 (126)
T PRK14656 27 LERIFTPHEQEYCAGKK---HSAQHYALRFAAKEAFLKAL-GTGLRDGISWHDMEVVNDQLGKPELRLYGRALELFAQAG 102 (126)
T ss_pred HHHhCCHHHHHHHHcCC---cHHHHHHHHhHHHHHHHHHh-ccCCCCCceeeEEEEEECCCCCeEEEECHHHHHHHHHcC
Confidence 45789999999987643 34568999999999988873 33 345688999999999999964210 0012
Q ss_pred CCCceEEeccCCCceeEE
Q 020190 132 PPPLHFNISHTSSLVACG 149 (329)
Q Consensus 132 ~~~l~fSISHs~~~v~~a 149 (329)
...+++||||+++|++..
T Consensus 103 ~~~i~vSiSH~~~~a~A~ 120 (126)
T PRK14656 103 LSKTFLSLSHDGGCAVAM 120 (126)
T ss_pred CCeEEEEEEcCCCcEEEE
Confidence 357899999999998643
No 29
>PRK14661 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=97.70 E-value=0.00023 Score=62.06 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=59.8
Q ss_pred HHhccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcC---CCCCCceeEecCCCCccEEeccCCCCCCCCCce
Q 020190 60 QYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNC---QVNPRSLKFKKTIYGKPEVDWENGDKWCPPPLH 136 (329)
Q Consensus 60 ~~~~~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~---g~~p~~i~~~~~~~GKP~l~~~~~~~~~~~~l~ 136 (329)
-+.+.++++|++.+..- .++.+++++|..+|+++...+ +. ++...+|++. ++.|+|++...... .....++
T Consensus 19 Fl~RifT~~E~~~~~~~---~~~~~~lAgrwAaKEAv~KAl-GtGl~~vsf~DIEI~-~~~G~P~v~l~g~~-~~~~~i~ 92 (169)
T PRK14661 19 FAERILGESEKRLFLTR---KRRREFIAGRFALKEAFFKAL-GTGLNGHSFTDVEFL-ESNGKPVLCVHKDF-GFFNYAH 92 (169)
T ss_pred HHHHcCCHHHHHHHHhc---cchhhhHHHHhHHHHHHHHHc-cCCcCCccceEEEEE-cCCCCeEEEEcccc-CccceEE
Confidence 34579999999987643 356789999999999988773 33 3567899997 57999999753211 1124689
Q ss_pred EEeccCCCcee
Q 020190 137 FNISHTSSLVA 147 (329)
Q Consensus 137 fSISHs~~~v~ 147 (329)
+||||++ +++
T Consensus 93 VSISHd~-yAi 102 (169)
T PRK14661 93 VSLSHDR-FAV 102 (169)
T ss_pred EEEeccc-cEE
Confidence 9999999 654
No 30
>TIGR00556 pantethn_trn phosphopantethiene--protein transferase domain. This alignment models a domain active in transferring the phophopantethiene prosthetic group to its attachment site on enzymes and carrier proteins. Many members of this family are small proteins that act on the acyl carrier protein involved in fatty acid biosynthesis. Some members are domains of larger proteins involved specialized pathways for the synthesis of unusual molecules including polyketides, atypical fatty acids, and antibiotics.
Probab=97.02 E-value=0.0048 Score=51.29 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=63.1
Q ss_pred HhccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcCC-----CCCCceeEecCCCCccEEeccCC-----CCC
Q 020190 61 YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQ-----VNPRSLKFKKTIYGKPEVDWENG-----DKW 130 (329)
Q Consensus 61 ~~~~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~g-----~~p~~i~~~~~~~GKP~l~~~~~-----~~~ 130 (329)
...+++++|++.+.... ...+.+++.+|..+|+++...+ +.| ....++++..++.|+|++..... +..
T Consensus 26 ~~~~~~~~E~~~~~~~~-~~~~~~~~~~~wsaKEA~~Ka~-g~g~~~~~~~~~~~~i~~~~~g~p~~~l~~~~~~~~~~~ 103 (128)
T TIGR00556 26 AERFFTPSEIEDYCKLS-PKSQTESLAGRWAAKEAFIKAL-GKGISLGELLFTDIEIVKDLKGAPRVCLIGEAAKDAEKL 103 (128)
T ss_pred HHHcCCHHHHHHHHhCC-hhHHHHHHHHHHHHHHHHHHHh-ccCcCCCCCccceEEEEeCCCCCcEEEECHHHHHHHHHc
Confidence 45799999999777643 2446679999999999988772 222 24567999999999999864211 001
Q ss_pred CCCCceEEeccCCCceeEEE
Q 020190 131 CPPPLHFNISHTSSLVACGV 150 (329)
Q Consensus 131 ~~~~l~fSISHs~~~v~~av 150 (329)
....++.||||+.+++.+.+
T Consensus 104 ~~~~~~lSish~~~~a~a~~ 123 (128)
T TIGR00556 104 GVCSVHVSISHDKEYAAAQV 123 (128)
T ss_pred CCCeEEEEEEcCCCcEEEEE
Confidence 22467899999999986543
No 31
>PF01648 ACPS: 4'-phosphopantetheinyl transferase superfamily; InterPro: IPR008278 These proteins transfer the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of pp-binding. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of the cysteamine thiol of 4'-PP []. This superfamily consists of two subtypes: The ACPS type such as ACPS_ECOLI and the Sfp type such as SFP_BACSU. The structure of the Sfp type is known [], which shows the active site accommodates a magnesium ion. The most highly conserved regions of the alignment are involved in binding the magnesium ion. ; GO: 0000287 magnesium ion binding, 0008897 holo-[acyl-carrier-protein] synthase activity, 0009059 macromolecule biosynthetic process; PDB: 3QMN_S 3GWM_A 3NFD_D 3NE9_C 1FTH_C 1FTE_C 1FTF_B 3HYK_B 2WDY_A 2WDS_A ....
Probab=96.61 E-value=0.0047 Score=49.62 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=65.6
Q ss_pred HHhccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhc-CC---CCCCceeEecCCCCccEEec---cCCCCCCC
Q 020190 60 QYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTN-CQ---VNPRSLKFKKTIYGKPEVDW---ENGDKWCP 132 (329)
Q Consensus 60 ~~~~~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~-~g---~~p~~i~~~~~~~GKP~l~~---~~~~~~~~ 132 (329)
-+..+++++|++.+..... .++.+++.....+|+++-+. .+ .| ....++.+...+.|+|++.. ........
T Consensus 20 ~~~~~~t~~E~~~l~~~~~-~~~~~~~~~~Wt~KEA~~Ka-~g~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (115)
T PF01648_consen 20 FAERFFTPEELEWLRSLPS-EERLQAFTLLWTAKEAVYKA-LGLTGSLDLSFREIELHKPPGGRPSLSLWASWIFDGDKI 97 (115)
T ss_dssp HHHHHS-HHHHHHHHCTSS-HHHHHHHHHHHHHHHHHHHH-HTTSTSSTSHGGGEEEEESTTSCEEEEEHHHHHHHHTTT
T ss_pred HHHHhCCHHHHHHHHhCCc-cchHHHHHHHHHHHHHHHHH-hcccCCcccccEEEEEEcCCCCCeEEEEeHHhhhhhcCc
Confidence 3446899999999998877 67889999999999998887 34 33 44567888999999999752 00001123
Q ss_pred CCceEEeccCCCceeEEE
Q 020190 133 PPLHFNISHTSSLVACGV 150 (329)
Q Consensus 133 ~~l~fSISHs~~~v~~av 150 (329)
..++.++||.++++++.|
T Consensus 98 ~~~~~~~~~~~~~~~a~v 115 (115)
T PF01648_consen 98 WRFHVSISHDEDYAAAFV 115 (115)
T ss_dssp EEEEEEEEEESSEEEEEE
T ss_pred eEEEEEEEeCCCEEEEEC
Confidence 468889999999998765
No 32
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=83.48 E-value=3.6 Score=28.25 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=32.7
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCceeEecCCCCccEEec
Q 020190 64 LLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDW 124 (329)
Q Consensus 64 ~Ls~~Er~r~~r~~~~~dr~~~L~~R~llr~~L~~~~~~~g~~p~~i~~~~~~~GKP~l~~ 124 (329)
+|+++|...+..|+++..+.++|- . .| |.+..+++|+|.+..
T Consensus 2 fLT~~El~elTG~k~~~~Q~~~L~----------~----~G-----i~~~~~~~G~p~V~r 43 (47)
T PF13986_consen 2 FLTDEELQELTGYKRPSKQIRWLR----------R----NG-----IPFVVRADGRPIVTR 43 (47)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHH----------H----CC-----CeeEECCCCCEEeeH
Confidence 699999999999998877766543 2 24 457889999999863
No 33
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=59.66 E-value=4.1 Score=32.08 Aligned_cols=14 Identities=50% Similarity=1.061 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhcCC
Q 020190 203 LWTLKEAYVKAVGR 216 (329)
Q Consensus 203 ~WtlKEA~~Ka~G~ 216 (329)
-|++||||+.|+|.
T Consensus 58 ~~aLKeafL~Al~~ 71 (103)
T PF11572_consen 58 SWALKEAFLRALGM 71 (103)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 59999999999874
No 34
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=58.56 E-value=12 Score=40.23 Aligned_cols=86 Identities=22% Similarity=0.345 Sum_probs=58.9
Q ss_pred cCCCCccEEeccCCCCCCCCCceEEeccCCCceeEEEecccccccchhhhhhhhhhhHHHHHHhcCCHHHHHHHHcCCCh
Q 020190 114 KTIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDP 193 (329)
Q Consensus 114 ~~~~GKP~l~~~~~~~~~~~~l~fSISHs~~~v~~avs~~~~vGVDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~ 193 (329)
+-+.|||-- ..+..+-.|.|+.+++-|+ +---|||.|+++++. +-+-+.+++|.+. +++.
T Consensus 455 R~a~GKp~~----------G~I~L~A~~~gn~ivIev~-DDG~Gid~ekI~~KA------iErGli~~~~a~~---lSd~ 514 (716)
T COG0643 455 RRAAGKPEE----------GTITLSAYHEGNNIVIEVS-DDGAGIDREKIREKA------IERGLITEEEAET---LSDE 514 (716)
T ss_pred HHHcCCCCc----------ceEEEEEEcCCCeEEEEEe-eCCCCCCHHHHHHHH------HHcCCCChHHhcc---CCHH
Confidence 446788843 4789999999999999999 667899999998642 2234556655442 2222
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020190 194 EIQRQELIKLWTLKEAYVKAVGRGFS 219 (329)
Q Consensus 194 ~~~~~~f~~~WtlKEA~~Ka~G~GL~ 219 (329)
+-..--|.-=++-+|-+.-..|.|..
T Consensus 515 Ei~~LIF~PGFSTa~~VtdvSGRGVG 540 (716)
T COG0643 515 EILNLIFAPGFSTAEQVTDVSGRGVG 540 (716)
T ss_pred HHHHHHhcCCCCcchhhhcccCCccC
Confidence 22222333347888888888888876
No 35
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=30.33 E-value=34 Score=23.00 Aligned_cols=17 Identities=47% Similarity=0.819 Sum_probs=12.7
Q ss_pred CCCceeEEEecccccccc
Q 020190 142 TSSLVACGVTVNVPIGID 159 (329)
Q Consensus 142 s~~~v~~avs~~~~vGVD 159 (329)
-|.+|.|||+ +.+|-+|
T Consensus 4 pG~~V~CAVT-g~~IpLd 20 (42)
T PF09866_consen 4 PGSFVRCAVT-GQPIPLD 20 (42)
T ss_pred CCCEEEEEee-CCcccHH
Confidence 4789999999 6666433
No 36
>cd08778 Death_TNFRSF21 Death domain of tumor necrosis factor receptor superfamily member 21. Death domain (DD) found in tumor necrosis factor receptor superfamily member 21 (TNFRSF21), also called death receptor-6, DR6. DR6 is an orphan receptor that is expressed ubiquitously, but shows high expression in lymphoid organs, heart, brain and pancreas. Results from DR6(-/-) mice indicate that DR6 plays an important regulatory role for the generation of adaptive immunity. It may also be involved in tumor cell survival and immune evasion. In neuronal cells, it binds beta-amyloid precursor protein (APP) and activates caspase-dependent cell death. It may contribute to the pathogenesis of Alzheimer's disease. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitme
Probab=23.70 E-value=1.7e+02 Score=21.84 Aligned_cols=53 Identities=11% Similarity=0.219 Sum_probs=31.6
Q ss_pred ccchhhhhh-hhhhhHHHHHHhcCCHHHHHH--HHcC-CChhHHHHHHHHHHHHHHH
Q 020190 157 GIDVEEKQR-RLKNKILAFAKRYFSPDEVKL--LTAI-SDPEIQRQELIKLWTLKEA 209 (329)
Q Consensus 157 GVDIE~~~~-~~~~~~~~l~~~~fs~~E~~~--l~~~-~~~~~~~~~f~~~WtlKEA 209 (329)
||||-+.-. ....++.++.+...+..|++. +.+. ....++.-+-++.||++.+
T Consensus 2 gvdilklvaaqvgsqwid~y~sla~aterevaafsngytadherayaalqhwtird~ 58 (84)
T cd08778 2 GIDILKLVAAQVGSQWKDIYQFLCNASEREVAAFSNGYTADHERAYAALQHWTIRGP 58 (84)
T ss_pred cchHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHcCCCcccHHHHHHHHHhhhccCh
Confidence 889876543 234567777777777666653 3321 1123445566789998743
Done!