BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020191
(329 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7VNP2|DUSB_HAEDU tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusB PE=3 SV=1
Length = 320
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 100 VDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVD--CLLITQSLDDHCHL 149
D +++G FG PWLF K+FL++ + DL +D C L+ + ++D H
Sbjct: 218 ADAVMIGRGSFGRPWLFQELKQFLETGDIIDLS-IDEKCQLMLKHIEDLHHF 268
>sp|P36022|DYHC_YEAST Dynein heavy chain, cytoplasmic OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DYN1 PE=1 SV=1
Length = 4092
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 39/187 (20%)
Query: 145 DHC------HLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQS--------- 189
DHC +L KPL ++ P +KV N + LL + +++ +E G
Sbjct: 516 DHCPTEKLSYLVKFKPLMELCPRIKVKVLENQQILLLEIKKDIRQLETGLELLPKILHVE 575
Query: 190 -----SEIEGRNGSKLRVKATAGPVL-------GPPWQRPENGYLVNSSQGQLTLYYEPH 237
I R L V++ ++ G W G +++S QL PH
Sbjct: 576 ALNNIPPISARISYFLNVQSRIDNIVQYLEALFGSNWNDTLEGRSISTSIVQLRKETNPH 635
Query: 238 CVYNQ---NFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDL 294
V+ NF EK ++++ TP++K L+ ED +L ++ F + +L
Sbjct: 636 DVFLHWLGNFPEKATANLLTTPILK-------LIRNNEDDYELK--VNFDFALAAAYSEL 686
Query: 295 DSKGFLA 301
S ++A
Sbjct: 687 RSLTYMA 693
>sp|Q8U053|Y1764_PYRFU UPF0173 metal-dependent hydrolase PF1764 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1764 PE=3 SV=1
Length = 225
Score = 35.4 bits (80), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 43/222 (19%)
Query: 78 VFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCL 137
+ K+T+L G++ + K+L+DP L GN + S + D VD +
Sbjct: 1 MVKVTFL-GHAAFYIEGSKKILIDPFLSGNP--------------VASAKPDDFKSVDLI 45
Query: 138 LITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNG 197
L+T + D HL + ++K + KV+A + + ++ V E G N
Sbjct: 46 LVTHAHGD--HLGDVGTIAKRT-GAKVVAMYDLANYIAEKYKGV---------ETIGMNY 93
Query: 198 SKLRVKATAGPVLGPPWQRPENG-YLVNSSQGQL------TLYYEPHCVYNQNFLEKERS 250
+V V P W +G Y + ++ G + T+Y H F + E
Sbjct: 94 GPTKVDEVE-IVQVPAWHSSSDGKYSIGNACGYIVKLDGVTIY---HAGDTYVFKDMELF 149
Query: 251 DIIITPVIKQLLP---KFTLVSGQEDAVKLAKLLHAKFIVPM 289
+ P+ LLP FT+ G +A K +LL + ++PM
Sbjct: 150 AELYGPIDVALLPIGGHFTM--GVREAAKAVELLKPRHVIPM 189
>sp|Q9V1C7|Y500_PYRAB UPF0173 metal-dependent hydrolase PYRAB05000 OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB05000 PE=3 SV=1
Length = 225
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 50/217 (23%)
Query: 83 YLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQS 142
Y+EG+ K+L+DP L GN + D VD +L+T +
Sbjct: 13 YIEGSK--------KILIDPFLTGNPQ--------------AVAKPEDFKDVDLILVTHA 50
Query: 143 LDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRV 202
D H+ ++K+S K++A + + F+ V E G N V
Sbjct: 51 HGD--HIGDAGEIAKIS-GAKIVAMYDIANYIAEKFKGV---------ETVGMNYGPTEV 98
Query: 203 KATAGPVLGPPWQRPENG-YLVNSSQGQL------TLYYEPHCVYNQNFLEKERSDIIIT 255
V P W +G Y + ++ G + T+Y H F + E +
Sbjct: 99 DGVF-IVQVPAWHSSSDGKYSIGNASGFIVKLDGKTIY---HAGDTYVFKDMELFSELYG 154
Query: 256 PVIKQLLP---KFTLVSGQEDAVKLAKLLHAKFIVPM 289
P+ LLP FT+ G ++A K +LL + +VPM
Sbjct: 155 PIDVALLPIGGHFTM--GVKEAAKAVELLKPRTVVPM 189
>sp|A5I666|OBG_CLOBH GTPase obg OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC
13319 / Type A) GN=obg PE=3 SV=1
Length = 424
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 161 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVLG------ 211
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIVKDAETDK 102
Query: 212 --PPWQRPENGYLV 223
+PE+ Y+V
Sbjct: 103 IMADLSKPEDSYVV 116
>sp|A7FXU6|OBG_CLOB1 GTPase obg OS=Clostridium botulinum (strain ATCC 19397 / Type A)
GN=obg PE=3 SV=1
Length = 424
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 161 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVLG------ 211
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIVKDAETDK 102
Query: 212 --PPWQRPENGYLV 223
+PE+ Y+V
Sbjct: 103 IMADLSKPEDSYVV 116
>sp|A7GHK2|OBG_CLOBL GTPase obg OS=Clostridium botulinum (strain Langeland / NCTC 10281
/ Type F) GN=obg PE=3 SV=1
Length = 424
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 161 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVLG------ 211
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIVKDAETDK 102
Query: 212 --PPWQRPENGYLV 223
+PE+ Y+V
Sbjct: 103 IMADLSKPEDSYVV 116
>sp|B1ILY5|OBG_CLOBK GTPase obg OS=Clostridium botulinum (strain Okra / Type B1) GN=obg
PE=3 SV=1
Length = 424
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 161 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVLG------ 211
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIVKDVETDK 102
Query: 212 --PPWQRPENGYLV 223
+PE+ Y+V
Sbjct: 103 IMADLSKPEDSYVV 116
>sp|B1KZR3|OBG_CLOBM GTPase obg OS=Clostridium botulinum (strain Loch Maree / Type A3)
GN=obg PE=3 SV=1
Length = 424
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 161 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVLG------ 211
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIVKDAETDK 102
Query: 212 --PPWQRPENGYLV 223
+PE+ Y+V
Sbjct: 103 IMADLSKPEDSYVV 116
>sp|O59330|Y1671_PYRHO UPF0173 metal-dependent hydrolase PH1671 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1671 PE=3 SV=2
Length = 225
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 87/218 (39%), Gaps = 52/218 (23%)
Query: 83 YLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQS 142
Y+EG+ K+L+DP L GN + + D VD +L+T +
Sbjct: 13 YIEGSK--------KILIDPFLTGNPQ--------------AAARPEDFKDVDLILVTHA 50
Query: 143 LDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQS-SEIEGRNGSKLR 201
D HL ++++S K++A + + +++V + +EI+G ++
Sbjct: 51 HGD--HLGDAGEIARIS-GAKIVAMYDLANYISEKYKDVETIGMNYGPTEIDGVFIVQV- 106
Query: 202 VKATAGPVLGPPWQRPENG-YLVNSSQG------QLTLYYEPHCVYNQNFLEKERSDIII 254
P W +G Y + + G +T+Y H F + E +
Sbjct: 107 ----------PAWHSSSDGKYSIGNPSGYIVKLDDVTIY---HAGDTYVFKDMELFAELY 153
Query: 255 TPVIKQLLP---KFTLVSGQEDAVKLAKLLHAKFIVPM 289
P+ LLP FT+ G +A K +LL + +VPM
Sbjct: 154 GPIDVALLPIGGHFTM--GVREAAKAVELLKPRKVVPM 189
>sp|P18035|TRBB_ECOLI Protein TrbB OS=Escherichia coli (strain K12) GN=trbB PE=4 SV=2
Length = 181
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 171 KTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLG---------PPWQRPENGY 221
K+LL L + V+ EIE + A P G P W R NG
Sbjct: 5 KSLLFTLLLSAAAVQASTRDEIERLWNPQGMATQPAQPAAGTSARTAKPAPRWFRLSNGR 64
Query: 222 LVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKF 265
VN + ++ L+ + HC Y F PV+KQL ++
Sbjct: 65 QVNLADWKVVLFMQGHCPYCHQF----------DPVLKQLAQQY 98
>sp|Q5RCU3|NAPEP_PONAB N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D
OS=Pongo abelii GN=NAPEPLD PE=2 SV=1
Length = 393
Score = 31.6 bits (70), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 70 EENAVATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKS-FQL 128
EE V ++T+L + + ++D + L DPI P + K+F +S +
Sbjct: 116 EEAGVRETGLRVTWLGHATVMVEMDELIFLTDPIFSSR---ASPSQYMGPKRFRRSPCTI 172
Query: 129 SDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPN 161
S+LP +D +LI+ + DH ++ L++ N
Sbjct: 173 SELPPIDAVLISHNHYDHLDYNSVIALNERFGN 205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,546,164
Number of Sequences: 539616
Number of extensions: 5054588
Number of successful extensions: 11739
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 11738
Number of HSP's gapped (non-prelim): 14
length of query: 329
length of database: 191,569,459
effective HSP length: 118
effective length of query: 211
effective length of database: 127,894,771
effective search space: 26985796681
effective search space used: 26985796681
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)