Query 020191
Match_columns 329
No_of_seqs 314 out of 2187
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 07:45:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3798 Predicted Zn-dependent 100.0 1.3E-38 2.7E-43 277.3 13.9 229 76-319 78-322 (343)
2 PRK11709 putative L-ascorbate 100.0 8.1E-36 1.8E-40 282.2 24.4 237 72-326 31-312 (355)
3 COG2220 Predicted Zn-dependent 100.0 5.4E-32 1.2E-36 247.4 22.7 215 75-320 3-233 (258)
4 PRK00685 metal-dependent hydro 100.0 8.3E-32 1.8E-36 241.3 23.1 207 79-326 1-218 (228)
5 PF13483 Lactamase_B_3: Beta-l 99.9 4.3E-27 9.4E-32 200.4 14.4 158 80-290 1-163 (163)
6 PF12706 Lactamase_B_2: Beta-l 99.8 4.4E-19 9.5E-24 154.3 12.1 147 130-291 26-194 (194)
7 TIGR02651 RNase_Z ribonuclease 99.8 1.6E-17 3.5E-22 154.8 18.5 199 85-323 17-287 (299)
8 PRK11244 phnP carbon-phosphoru 99.8 2.8E-17 6E-22 149.5 19.5 177 85-293 36-223 (250)
9 PRK02113 putative hydrolase; P 99.7 4.3E-17 9.2E-22 148.4 16.9 173 86-293 35-225 (252)
10 TIGR03307 PhnP phosphonate met 99.7 1E-16 2.2E-21 144.8 19.1 176 86-293 27-213 (238)
11 TIGR02649 true_RNase_BN ribonu 99.7 9.1E-16 2E-20 143.5 18.1 201 85-323 16-291 (303)
12 PRK00055 ribonuclease Z; Revie 99.7 7.8E-16 1.7E-20 141.0 14.9 206 79-322 2-253 (270)
13 PRK05184 pyrroloquinoline quin 99.6 3.3E-14 7.3E-19 132.8 18.0 193 85-293 38-271 (302)
14 PRK02126 ribonuclease Z; Provi 99.6 1.3E-13 2.9E-18 130.2 18.9 181 82-294 12-316 (334)
15 TIGR02108 PQQ_syn_pqqB coenzym 99.5 2.2E-13 4.8E-18 127.0 16.7 194 86-293 38-271 (302)
16 TIGR03675 arCOG00543 arCOG0054 99.5 7.6E-13 1.7E-17 134.4 19.7 192 76-289 172-409 (630)
17 TIGR00649 MG423 conserved hypo 99.5 7.8E-13 1.7E-17 129.2 18.4 190 85-292 13-227 (422)
18 PRK04286 hypothetical protein; 99.5 1.4E-12 3E-17 121.7 18.8 195 86-293 15-251 (298)
19 smart00849 Lactamase_B Metallo 99.5 2.7E-13 5.9E-18 115.9 10.5 168 82-290 2-183 (183)
20 COG1234 ElaC Metal-dependent h 99.4 4.2E-12 9.1E-17 118.0 17.1 89 223-324 184-279 (292)
21 PRK11921 metallo-beta-lactamas 99.4 9E-13 1.9E-17 127.7 10.2 181 86-295 33-228 (394)
22 PLN02469 hydroxyacylglutathion 99.3 2.3E-11 5.1E-16 111.1 15.0 163 84-296 9-180 (258)
23 PLN02962 hydroxyacylglutathion 99.3 7.1E-12 1.5E-16 113.9 11.0 189 85-319 22-224 (251)
24 TIGR03413 GSH_gloB hydroxyacyl 99.3 9.9E-12 2.1E-16 113.0 11.6 157 87-295 11-169 (248)
25 PLN02398 hydroxyacylglutathion 99.3 2.3E-11 5.1E-16 114.2 13.6 160 84-296 84-250 (329)
26 COG0426 FpaA Uncharacterized f 99.3 6.5E-12 1.4E-16 118.7 9.7 184 86-296 36-228 (388)
27 COG1782 Predicted metal-depend 99.3 9.7E-11 2.1E-15 112.1 17.4 191 77-290 179-416 (637)
28 COG0595 mRNA degradation ribon 99.3 5.5E-11 1.2E-15 118.2 16.1 195 77-289 7-233 (555)
29 PRK05452 anaerobic nitric oxid 99.3 2E-11 4.3E-16 120.9 10.7 129 86-238 35-167 (479)
30 PF00753 Lactamase_B: Metallo- 99.2 5.7E-12 1.2E-16 107.6 3.5 180 83-290 3-194 (194)
31 PRK10241 hydroxyacylglutathion 99.2 9.4E-11 2E-15 106.8 11.5 156 88-296 14-171 (251)
32 COG1236 YSH1 Predicted exonucl 99.2 8.5E-10 1.8E-14 107.7 18.8 176 84-289 12-223 (427)
33 KOG0813 Glyoxylase [General fu 99.2 1.2E-10 2.6E-15 104.9 11.1 156 130-320 48-207 (265)
34 COG1237 Metal-dependent hydrol 99.1 3.4E-09 7.5E-14 94.6 15.7 184 88-294 24-234 (259)
35 TIGR00361 ComEC_Rec2 DNA inter 99.1 8.6E-09 1.9E-13 106.2 20.0 185 77-290 438-631 (662)
36 COG2248 Predicted hydrolase (m 99.1 3.9E-09 8.5E-14 93.3 14.1 149 88-256 17-208 (304)
37 KOG1136 Predicted cleavage and 99.0 8E-09 1.7E-13 94.7 15.9 182 84-290 15-240 (501)
38 TIGR02650 RNase_Z_T_toga ribon 99.0 7.3E-09 1.6E-13 94.5 14.3 204 86-323 10-266 (277)
39 COG2333 ComEC Predicted hydrol 99.0 2.2E-08 4.7E-13 92.6 17.1 161 79-259 44-217 (293)
40 PRK11539 ComEC family competen 99.0 9.6E-09 2.1E-13 107.3 16.1 160 76-259 498-667 (755)
41 KOG1137 mRNA cleavage and poly 98.9 4.2E-09 9.1E-14 101.8 10.4 159 76-257 11-207 (668)
42 COG1235 PhnP Metal-dependent h 98.9 1.5E-08 3.3E-13 93.2 12.1 155 132-296 61-240 (269)
43 COG0491 GloB Zn-dependent hydr 98.8 1.1E-08 2.3E-13 91.5 8.2 132 86-243 25-173 (252)
44 KOG2121 Predicted metal-depend 98.5 4.9E-08 1.1E-12 97.7 3.6 202 76-293 440-688 (746)
45 KOG1135 mRNA cleavage and poly 98.2 1.1E-05 2.4E-10 80.4 11.6 149 86-256 15-197 (764)
46 PF14597 Lactamase_B_5: Metall 97.9 4.6E-05 9.9E-10 64.8 8.2 157 85-292 22-182 (199)
47 KOG0814 Glyoxylase [General fu 97.7 2.5E-05 5.4E-10 65.8 3.6 110 94-239 31-142 (237)
48 KOG1361 Predicted hydrolase in 97.4 0.00092 2E-08 65.4 10.3 131 133-281 112-252 (481)
49 PF02112 PDEase_II: cAMP phosp 96.7 0.018 3.9E-07 54.5 11.1 148 133-282 79-278 (335)
50 KOG4736 Uncharacterized conser 96.2 0.021 4.5E-07 52.3 7.7 165 81-297 91-261 (302)
51 COG2015 Alkyl sulfatase and re 93.8 0.094 2E-06 51.3 4.9 70 87-168 127-201 (655)
52 COG5212 PDE1 Low-affinity cAMP 92.3 0.46 1E-05 43.4 6.8 104 133-242 112-236 (356)
53 PF07521 RMMBL: RNA-metabolisi 80.0 2.4 5.3E-05 27.3 3.0 27 266-292 15-41 (43)
54 KOG1137 mRNA cleavage and poly 73.9 27 0.00059 35.3 9.6 44 267-324 397-440 (668)
55 PF13691 Lactamase_B_4: tRNase 67.8 9.4 0.0002 27.0 3.8 46 86-147 12-61 (63)
56 KOG3592 Microtubule-associated 65.9 3 6.5E-05 43.0 1.2 53 87-155 49-101 (934)
57 KOG3798 Predicted Zn-dependent 48.5 7.9 0.00017 35.2 0.8 62 90-155 98-160 (343)
58 PF00478 IMPDH: IMP dehydrogen 38.6 22 0.00047 34.1 2.2 45 133-178 120-170 (352)
59 PRK05096 guanosine 5'-monophos 38.4 41 0.00089 32.0 3.9 48 132-180 121-174 (346)
60 COG4090 Uncharacterized protei 37.0 83 0.0018 25.7 4.9 77 220-303 46-137 (154)
61 PF09897 DUF2124: Uncharacteri 36.1 27 0.00059 29.0 2.1 67 234-303 64-132 (147)
62 TIGR01305 GMP_reduct_1 guanosi 33.7 56 0.0012 31.1 4.0 48 132-180 120-173 (343)
63 TIGR00649 MG423 conserved hypo 31.9 43 0.00092 32.7 3.1 30 264-293 357-386 (422)
64 PF07522 DRMBL: DNA repair met 30.1 58 0.0013 25.3 3.1 25 265-289 81-105 (110)
65 TIGR01358 DAHP_synth_II 3-deox 25.6 1E+02 0.0022 30.4 4.3 51 268-329 289-344 (443)
66 PLN02291 phospho-2-dehydro-3-d 21.7 1.3E+02 0.0027 30.0 4.1 51 268-329 309-364 (474)
No 1
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=100.00 E-value=1.3e-38 Score=277.30 Aligned_cols=229 Identities=20% Similarity=0.280 Sum_probs=184.8
Q ss_pred CCceEEEEEcCcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCcccc-CCCCCCCCCCCCEEEEeCCCCCCCChhcHHH
Q 020191 76 TDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFL-KSFQLSDLPQVDCLLITQSLDDHCHLKTLKP 154 (329)
Q Consensus 76 ~~~~~it~lGhss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~-~~~~~~~lp~iD~VlISH~H~DHld~~tl~~ 154 (329)
..++--|||||||.++..+|.++++||+|+.++++ -..+++|.. |+..++++|++|.+++||+|+||+|..+++.
T Consensus 78 ~~~~~~twlg~a~~~~~~~g~~~~tdpvf~d~~if----~s~gPkry~~pp~~~~~~p~~d~~~vsh~h~dhld~~~~~~ 153 (343)
T KOG3798|consen 78 ESDLFATWLGHATVLVDLEGVKFVTDPVWADRASF----TSFGPKRYRPPPMKLEDLPDLDFAVVSHDHYDHLDADAVKK 153 (343)
T ss_pred cCcHHHhhhcceeEEEeccCcEEecchhhccchhh----cccCcccccCCchhhccCCCCceeccccccccccchHHHHh
Confidence 34566799999999999999999999999988764 122566654 3677889999999999999999999999999
Q ss_pred hhhhCCCceEEEcCChHH-HHhhcC-CceEEeCCCceEEecccCCCceEEEEecCCCCC-CCC-CCC---cceEEEEecC
Q 020191 155 LSKMSPNLKVIATPNAKT-LLDPLF-QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLG-PPW-QRP---ENGYLVNSSQ 227 (329)
Q Consensus 155 l~~~~p~~~v~~~~~~~~-~L~~~~-~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g-~~~-~~~---~~g~~i~~~~ 227 (329)
+..+ +..+.++|++.+ ++...+ ..+.++.||++.++-. ++..++|.++|++|++ |++ ++| |+||.+...+
T Consensus 154 ~~~~--~~~~wfvp~g~k~~m~~~gc~~v~el~wwe~~~~vk-n~~~~ti~~tPaqHw~~R~L~D~Nk~LW~sw~v~g~~ 230 (343)
T KOG3798|consen 154 ITDR--NPQIWFVPLGMKKWMEGDGSSTVTELNWGESSEFVK-NGKTYTIWCLPAQHWGQRGLFDRNKRLWSSWAVIGEN 230 (343)
T ss_pred hhcc--CccceeehhhhhheecCCCCCceeEeeccchhceec-CCcEEEEEEcchhhhcccccccCCcceeeeeEEecCC
Confidence 9887 455677788766 555554 5689999998877642 1357899999999764 543 333 9999999865
Q ss_pred CcceEEEcCCCCCch-hhhcc----cCCcEEEEccCcccCCCccc---cCCHHHHHHHHHHcCCCEEEEeecccccCccc
Q 020191 228 GQLTLYYEPHCVYNQ-NFLEK----ERSDIIITPVIKQLLPKFTL---VSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGF 299 (329)
Q Consensus 228 ~~~~i~~sGDt~~~~-~~~~~----~~~Dl~~l~~~g~~~~~~~~---h~~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~ 299 (329)
.++||+|||||.+ .|++| +++|+|.+|| |||.|+|.| |.+|+||+++++++++|.++.+|||||.+++
T Consensus 231 --nrfffaGDTGyc~~~F~~IgerfGpfdLAaiPi-GaYePrWfmK~~HInPeEav~Ihkdv~arns~gIHWGTf~l~~- 306 (343)
T KOG3798|consen 231 --NRFFFAGDTGYCDGEFKKIGERFGPFDLAAIPI-GAYEPRWFMKSQHINPEEAVEIHKDVRAKNSIGIHWGTFHLGS- 306 (343)
T ss_pred --ceEEecCCCCcccHHHHHHHHhcCCcceeeccc-cccCchhhcccccCCHHHHHHHHHHHhhhcceeEeeeeeeccc-
Confidence 5999999999988 67766 5999999999 999998877 9999999999999999999999999999987
Q ss_pred hhhhhcccCCHHHHHHHHHH
Q 020191 300 LASIIQSEGTVESFKCKIYK 319 (329)
Q Consensus 300 ~~~~~~~~~~~~~f~~~~~~ 319 (329)
.-++ +.++.++++++.
T Consensus 307 -EyyL---EP~~KL~el~e~ 322 (343)
T KOG3798|consen 307 -EYYL---EPRDKLKELMEA 322 (343)
T ss_pred -ceec---CcHHHHHHHHHh
Confidence 2233 455666555543
No 2
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=100.00 E-value=8.1e-36 Score=282.21 Aligned_cols=237 Identities=16% Similarity=0.204 Sum_probs=176.4
Q ss_pred cccCCCceEEEEEcCcEEEEEe-CCcEEEEcCccCCCCC--CCCCcc--------ccCCcc------ccC-CCCCCCCCC
Q 020191 72 NAVATDVFKLTYLEGNSWLWDL-DGVKVLVDPILVGNLD--FGIPWL--------FDAGKK------FLK-SFQLSDLPQ 133 (329)
Q Consensus 72 ~~~~~~~~~it~lGhss~li~~-~g~~ILiDP~~sg~~s--~p~~~~--------~~~~~~------~~~-~~~~~~lp~ 133 (329)
...++++++++|||||+++|++ +|.+||||++++ +++ ...++. ..+.++ ..| .+.++++++
T Consensus 31 ~~~~~~~~~~~wlG~a~~li~~~~g~~ILiD~~~~-~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i~~ 109 (355)
T PRK11709 31 EVVPPGTFAMWWLGCTGIWLKTEGGTNVCVDLWCG-TGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAIRE 109 (355)
T ss_pred cccCCCcEEEEEecceEEEEEcCCCcEEEEeecCC-CCCccccccccccccchhhhccccccCCCCCCCCcccCHHHCCC
Confidence 3446688999999999999998 689999997665 321 001111 012221 122 456678999
Q ss_pred CCEEEEeCCCCCCCChhcHHHhhhhC-CCceEEEcCChHHHHhhcC---CceEEeCCCceEEecccCCCceEEEEecCCC
Q 020191 134 VDCLLITQSLDDHCHLKTLKPLSKMS-PNLKVIATPNAKTLLDPLF---QNVTYVEPGQSSEIEGRNGSKLRVKATAGPV 209 (329)
Q Consensus 134 iD~VlISH~H~DHld~~tl~~l~~~~-p~~~v~~~~~~~~~L~~~~---~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~ 209 (329)
||+|||||.|+||+|..+++.|.+.. ++++++++......+++++ .++++++||++++++ +++|+++|+.+
T Consensus 110 IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig-----~v~It~lpa~h 184 (355)
T PRK11709 110 IDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIGWGVPKERCIVVKPGDVVKVK-----DIKIHALDSFD 184 (355)
T ss_pred CCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHhcCCCcceEEEecCCCcEEEC-----CEEEEEEeccc
Confidence 99999999999999999999987754 2455555444455777775 479999999999997 89999999832
Q ss_pred -----------CC---CC---CCCCcceEEEEecCCcceEEEcCCCCCchhhhcc---cCCcEEEEccCcccCCCccccC
Q 020191 210 -----------LG---PP---WQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEK---ERSDIIITPVIKQLLPKFTLVS 269 (329)
Q Consensus 210 -----------~g---~~---~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~---~~~Dl~~l~~~g~~~~~~~~h~ 269 (329)
+. +. ....+.||+|+.++ .+|||+|||+|.+.|.++ .++|++++++ |++..+...||
T Consensus 185 ~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~--~tvy~sGDT~~~~~~~~i~~~~~iDvall~i-G~~p~~~~~hm 261 (355)
T PRK11709 185 RTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPG--GNIYHSGDSHYSNYFAKHGNDHQIDVALGSY-GENPRGITDKM 261 (355)
T ss_pred cccccccccccccccccccccCCcceEEEEEEeCC--eEEEEeCCCCccHHHHHHHhcCCCCEEEecC-CCCCCCCcCCC
Confidence 11 11 11135799999865 599999999999877754 4899999998 55322334599
Q ss_pred CHHHHHHHHHHcCCCEEEEeecccccCccchhhhhcccCCHHHHHHHH---HHhcCCcce
Q 020191 270 GQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKCKI---YKCYDRKFC 326 (329)
Q Consensus 270 ~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~~~~~~~~~~~~~~f~~~~---~~~~~~k~~ 326 (329)
+++||++++++++++++||+||++|.. . .+++++|++++ +.++.+|+.
T Consensus 262 ~p~ea~~~a~~l~ak~vIpiH~dtf~~-------~--~~dp~~~~~~~~~~~~~~~~~~~ 312 (355)
T PRK11709 262 TSIDILRMAESLNAKVVIPVHHDIWSN-------F--QADPQEILVLWKMRKDRLQYGFH 312 (355)
T ss_pred CHHHHHHHHHHcCCCEEEEEChhhccc-------c--ccCHHHHHHHHHhhhhhcccccc
Confidence 999999999999999999999999986 3 67899999888 344665554
No 3
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=100.00 E-value=5.4e-32 Score=247.38 Aligned_cols=215 Identities=23% Similarity=0.293 Sum_probs=166.8
Q ss_pred CCCceEEEEEcCcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHH
Q 020191 75 ATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKP 154 (329)
Q Consensus 75 ~~~~~~it~lGhss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~ 154 (329)
...+|+|||+||||++||.++++|||||+++++.+ +..+.. ......++++|+|+|||+|+||+|..++..
T Consensus 3 ~~~~m~itwlGha~~lie~~~~~iliDP~~~~~~~-~~~~~~--------~~~~~~~~~~D~ilitH~H~DHl~~~~~~~ 73 (258)
T COG2220 3 SAEDMKITWLGHAAFLIETGGKRILIDPVLSGAPS-PSNFPG--------GLFEDLLPPIDYILITHDHYDHLDDETLIA 73 (258)
T ss_pred CCcCceEEEecceEEEEEECCEEEEECcccCCCCC-cccccC--------cCChhhcCCCCEEEEeCCCccccCHHHHHH
Confidence 35679999999999999999999999999998765 221110 123455678999999999999999999988
Q ss_pred hhhhCCCceEEEcCChHH-HHhhcC---CceEEeCCCceEEecccCCCceEEEEecCCCCC-CCC-------CCCcceEE
Q 020191 155 LSKMSPNLKVIATPNAKT-LLDPLF---QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLG-PPW-------QRPENGYL 222 (329)
Q Consensus 155 l~~~~p~~~v~~~~~~~~-~L~~~~---~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g-~~~-------~~~~~g~~ 222 (329)
+... ++++++.|.+.. .+.+++ .++.+++||+.++++ +++++++++.++. +.. ...|+||+
T Consensus 74 ~~~~--~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~v 146 (258)
T COG2220 74 LRTN--KAPVVVVPLGAGDLLIRDGVEAERVHELGWGDVIELG-----DLEITAVPAYHVSARHLPGRGIRPTGLWVGYV 146 (258)
T ss_pred HhcC--CCcEEEeHHHHHHHHHhcCCCcceEEeecCCceEEec-----CcEEEEEEeecccccccCCCCccccCCceEEE
Confidence 8752 477888888875 665675 469999999999997 8998888887432 211 13489999
Q ss_pred EEecCCcceEEEcCCCCCchhhhc---ccCCcEEEEccCcccCCCccccCCHHHHHHHHHHcCCCEEEEeecc-cccCcc
Q 020191 223 VNSSQGQLTLYYEPHCVYNQNFLE---KERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNG-DLDSKG 298 (329)
Q Consensus 223 i~~~~~~~~i~~sGDt~~~~~~~~---~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H~~-~f~~~g 298 (329)
|+.++ .++|++||++| ..+.. .+++|++++|+ |.|.. ..+|.+++++++.+.++++.++|+||+ ++..
T Consensus 147 i~~~g--~~iyh~GDt~~-~~~~~~~~~~~~DvallPi-g~~~~--~~~~~~~~~~~~~~~l~~~~viP~Hy~~~~~~-- 218 (258)
T COG2220 147 IETPG--GRVYHAGDTGY-LFLIIEELDGPVDVALLPI-GGYPN--ATMMPPEAAVAAAEVLRPKRVIPMHYGPTFPP-- 218 (258)
T ss_pred EEeCC--ceEEeccCccH-HHHhhhhhcCCccEEEecc-CCCCC--CccCCHHHHHHHHHHhcCCeEEeecccccCcc--
Confidence 99965 59999999998 33222 23689999999 66653 335689999999999999999999999 5544
Q ss_pred chhhhhcccCCHHHHHHHHHHh
Q 020191 299 FLASIIQSEGTVESFKCKIYKC 320 (329)
Q Consensus 299 ~~~~~~~~~~~~~~f~~~~~~~ 320 (329)
. ..++++|+..+...
T Consensus 219 -----~--~~~~~~~~~~~~~~ 233 (258)
T COG2220 219 -----I--EEDPEEFLHALDAG 233 (258)
T ss_pred -----c--cCCHHHHHHhhhhc
Confidence 2 56788888877653
No 4
>PRK00685 metal-dependent hydrolase; Provisional
Probab=100.00 E-value=8.3e-32 Score=241.33 Aligned_cols=207 Identities=23% Similarity=0.332 Sum_probs=161.9
Q ss_pred eEEEEEcCcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhh
Q 020191 79 FKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM 158 (329)
Q Consensus 79 ~~it~lGhss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~ 158 (329)
|+|+|+||||++|+.+|.+|||||++++.... .+..+++ ++|+|||||.|+||++ .+..+..+
T Consensus 1 m~i~~lG~s~~li~~~~~~iLiDP~~~~~~~~--------------~~~~~~~-~id~vliTH~H~DH~~--~~~~~~~~ 63 (228)
T PRK00685 1 MKITWLGHSAFLIETGGKKILIDPFITGNPLA--------------DLKPEDV-KVDYILLTHGHGDHLG--DTVEIAKR 63 (228)
T ss_pred CEEEEEcceEEEEEECCEEEEECCCCCCCCCC--------------CCChhcC-cccEEEeCCCCccccc--cHHHHHHh
Confidence 68999999999999999999999988753220 1223344 8999999999999985 34445433
Q ss_pred CCCceEEEcCChHHHHhhcC-CceEEeCCCceEEecccCCCceEEEEecCCCCCCCC-------CCCcceEEEEecCCcc
Q 020191 159 SPNLKVIATPNAKTLLDPLF-QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPW-------QRPENGYLVNSSQGQL 230 (329)
Q Consensus 159 ~p~~~v~~~~~~~~~L~~~~-~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~-------~~~~~g~~i~~~~~~~ 230 (329)
+++++++++.....+++.+ .++++++++++++++ +++|+++|+.|..... ..++.||+|+.++ .
T Consensus 64 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~--~ 135 (228)
T PRK00685 64 -TGATVIANAELANYLSEKGVEKTHPMNIGGTVEFD-----GGKVKLTPALHSSSFIDEDGITYLGNPTGFVITFEG--K 135 (228)
T ss_pred -CCCEEEEeHHHHHHHHhcCCCceeeccCCCcEEEC-----CEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEECC--e
Confidence 3688888777666777664 478999999999997 8999999987543211 1136899999864 5
Q ss_pred eEEEcCCCCCchhhhcc---cCCcEEEEccCcccCCCccccCCHHHHHHHHHHcCCCEEEEeecccccCccchhhhhccc
Q 020191 231 TLYYEPHCVYNQNFLEK---ERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSE 307 (329)
Q Consensus 231 ~i~~sGDt~~~~~~~~~---~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~~~~~~~~~ 307 (329)
+|||+||+++.+++.++ .++|++++++++ ..||+++||+++++.++||.++|+||++|.. . .
T Consensus 136 ~i~~~GDt~~~~~~~~~~~~~~~D~~~~~~~~------~~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~-------~--~ 200 (228)
T PRK00685 136 TIYHAGDTGLFSDMKLIGELHKPDVALLPIGD------NFTMGPEDAALAVELIKPKIVIPMHYNTFPL-------I--E 200 (228)
T ss_pred EEEEecCccchhHHHHHHHhhCCCEEEEecCC------ccccCHHHHHHHHHhhCCCEEEEeccCCCcC-------C--c
Confidence 99999999998766543 489999999843 2488999999999999999999999998764 2 4
Q ss_pred CCHHHHHHHHHHhcCCcce
Q 020191 308 GTVESFKCKIYKCYDRKFC 326 (329)
Q Consensus 308 ~~~~~f~~~~~~~~~~k~~ 326 (329)
+++++|++++++ ++.+.+
T Consensus 201 ~~~~~~~~~~~~-~~~~~~ 218 (228)
T PRK00685 201 QDPEKFKALVEG-LGTKVV 218 (228)
T ss_pred CCHHHHHHHHHh-cCCcEE
Confidence 679999999988 555543
No 5
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.95 E-value=4.3e-27 Score=200.40 Aligned_cols=158 Identities=27% Similarity=0.508 Sum_probs=108.4
Q ss_pred EEEEEcCcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhhC
Q 020191 80 KLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMS 159 (329)
Q Consensus 80 ~it~lGhss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~ 159 (329)
+|||+||||++|+.+|++||+|||.+. .. +. ....++|+|+|||.|+||++..+++.+.
T Consensus 1 ~It~lgha~~~ie~~g~~iliDP~~~~-~~----~~-------------~~~~~~D~IlisH~H~DH~~~~~l~~~~--- 59 (163)
T PF13483_consen 1 KITWLGHASFLIETGGKRILIDPWFSS-VG----YA-------------PPPPKADAILISHSHPDHFDPETLKRLD--- 59 (163)
T ss_dssp EEEEEETTEEEEEETTEEEEES--TTT-------T--------------TSS-B-SEEEESSSSTTT-CCCCCCCHH---
T ss_pred CEEEEEeeEEEEEECCEEEEECCCCCc-cC----cc-------------cccCCCCEEEECCCccccCChhHhhhcc---
Confidence 689999999999999999999998641 11 00 0115889999999999999988877662
Q ss_pred CCceEEEcCChHHHHhhcCCceEEeCCCceEEecccCCCceEEEEecCCCCCCC-C-CCCcceEEEEecCCcceEEEcCC
Q 020191 160 PNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPP-W-QRPENGYLVNSSQGQLTLYYEPH 237 (329)
Q Consensus 160 p~~~v~~~~~~~~~L~~~~~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~-~-~~~~~g~~i~~~~~~~~i~~sGD 237 (329)
.++..+..+++++++ +++|+.+++.+.... . ....++|+++.++ .+||+.||
T Consensus 60 -------------------~~~~vv~~~~~~~~~-----~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g--~~i~~~Gd 113 (163)
T PF13483_consen 60 -------------------RDIHVVAPGGEYRFG-----GFKITAVPAYHDGPGGHPRGENVGYLIEVGG--VTIYHAGD 113 (163)
T ss_dssp -------------------TSSEEE-TTEEEECT-----TEEEEEEEEEE-STGTS-TTCCEEEEEEETT--EEEEE-TT
T ss_pred -------------------cccEEEccceEEEEe-----eeEEEEEeeeccccCCCCcCCeEEEEEEeCC--CEEEEECC
Confidence 234555567888886 899999988643211 1 1236799999954 79999999
Q ss_pred CCCc---hhhhcccCCcEEEEccCcccCCCccccCCHHHHHHHHHHcCCCEEEEee
Q 020191 238 CVYN---QNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMK 290 (329)
Q Consensus 238 t~~~---~~~~~~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H 290 (329)
++.. ..+.+.+++|++++|++| ...|++++|+++++.++||++||+|
T Consensus 114 ~~~~~~~~~~~~~~~vDvl~~p~~g------~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 114 TGFPPDDEQLKQLGKVDVLFLPVGG------PFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp --S---HHHHHHH-S-SEEEEE--T------TTS--HHHHHHHHHHCT-SEEEEES
T ss_pred CccCCCHHHHhcccCCCEEEecCCC------CcccCHHHHHHHHHHcCCCEEEeCC
Confidence 9873 335556799999999965 3356999999999999999999999
No 6
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.80 E-value=4.4e-19 Score=154.27 Aligned_cols=147 Identities=25% Similarity=0.375 Sum_probs=113.8
Q ss_pred CCCCCCEEEEeCCCCCC-CChhcHHHhhhhCCCceEEEcCChHHHHh--hcC----------CceEEeCCCceEEecccC
Q 020191 130 DLPQVDCLLITQSLDDH-CHLKTLKPLSKMSPNLKVIATPNAKTLLD--PLF----------QNVTYVEPGQSSEIEGRN 196 (329)
Q Consensus 130 ~lp~iD~VlISH~H~DH-ld~~tl~~l~~~~p~~~v~~~~~~~~~L~--~~~----------~~i~~l~~ge~~~~~~~~ 196 (329)
+++++|+|+|||.|+|| +++.++.......++ ++|+++...+.++ .++ ..+.++..++.++++
T Consensus 26 ~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~-~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 101 (194)
T PF12706_consen 26 DLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK-PIYGPPETKEFLREYKFGILDLYPEEDNFDIIEISPGDEFEIG--- 101 (194)
T ss_dssp SSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT-EEEECHHHHHHHHHHHHTHHTTCCTTSGEEEEEECTTEEEEET---
T ss_pred ccCCCCEEEECCCCccccCChHHHHHHhhcccc-eEEecHHHHHHHHhhhcccccccccccceeEEEeccCceEEec---
Confidence 55699999999999999 777777777665444 8888888777776 431 357888889889987
Q ss_pred CCceEEEEecCCCCCCCCCCCcce----EEEEecCCcceEEEcCCCCCchhhhcccCCcEEEEccCcccC-----CCccc
Q 020191 197 GSKLRVKATAGPVLGPPWQRPENG----YLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLL-----PKFTL 267 (329)
Q Consensus 197 ~~~l~i~~~p~~~~g~~~~~~~~g----~~i~~~~~~~~i~~sGDt~~~~~~~~~~~~Dl~~l~~~g~~~-----~~~~~ 267 (329)
+++|+++|+.|... ..+ |+|+.++ .+|+|+||+.+ .+.++.++|+++++++..+. .....
T Consensus 102 --~~~i~~~~~~H~~~-----~~~~~~g~~i~~~~--~~i~~~gD~~~--~~~~~~~~D~li~~~~~~~~~~~~~~~~~~ 170 (194)
T PF12706_consen 102 --DFRITPFPANHGPP-----SYGGNKGFVIEPDG--KKIFYSGDTNY--DFEELKNIDLLILECGYIDEEEEPPARGPG 170 (194)
T ss_dssp --TEEEEEEEEESSSC-----CEEECCEEEEEETT--EEEEEETSSSS--CHHHHTTBSEEEEEBCBSSGGHHCHHCCTT
T ss_pred --eEEEEEEecccccc-----ccccCceEEEecCC--cceEEeeccch--hhhhhccCCEEEEeCCCcchhhcccccCCC
Confidence 89999999975432 233 9999754 69999999998 35555689999999843211 12245
Q ss_pred cCCHHHHHHHHHHcCCCEEEEeec
Q 020191 268 VSGQEDAVKLAKLLHAKFIVPMKN 291 (329)
Q Consensus 268 h~~~~ea~~~~~~l~~k~~ip~H~ 291 (329)
|++.+++++++++++++.++++||
T Consensus 171 h~~~~~~~~~~~~~~~~~~il~H~ 194 (194)
T PF12706_consen 171 HMTLEEALELAKELKAKKVILIHF 194 (194)
T ss_dssp SBBHHHHHHHHHHHTTSEEEEESB
T ss_pred CCCHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999999999997
No 7
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.77 E-value=1.6e-17 Score=154.82 Aligned_cols=199 Identities=19% Similarity=0.158 Sum_probs=137.3
Q ss_pred cCcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhh------h
Q 020191 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSK------M 158 (329)
Q Consensus 85 Ghss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~------~ 158 (329)
+++|++|+.++.+||||+ |.... +++..... ++.++|+|||||.|.||+ .++..+.. +
T Consensus 17 ~~~~~~v~~~~~~iLiD~---G~g~~----------~~l~~~~~-~~~~i~~IfiTH~H~DH~--~Gl~~l~~~~~~~~~ 80 (299)
T TIGR02651 17 NLPSIALKLNGELWLFDC---GEGTQ----------RQMLRSGI-SPMKIDRIFITHLHGDHI--LGLPGLLSTMSFQGR 80 (299)
T ss_pred CCceEEEEECCeEEEEEC---CHHHH----------HHHHHcCC-CHHHCcEEEEECCchhhh--cChHHHHHhhccCCC
Confidence 578999999999999999 64320 11100111 234789999999999995 55655532 1
Q ss_pred CCCceEEEcCChHHHHhhc--------C--CceEEeCCCc-eEEecccCCCceEEEEecCCCCCCCCCCCcceEEEEecC
Q 020191 159 SPNLKVIATPNAKTLLDPL--------F--QNVTYVEPGQ-SSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQ 227 (329)
Q Consensus 159 ~p~~~v~~~~~~~~~L~~~--------~--~~i~~l~~ge-~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~ 227 (329)
...++||+++.....++.. . .++.++.+++ .+..+ +++|+++|..|.. ...||+|+.++
T Consensus 81 ~~~i~Iy~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~H~~-----~~~gy~i~~~~ 150 (299)
T TIGR02651 81 KEPLTIYGPPGIKEFIETSLRVSYTYLNYPIKIHEIEEGGLVFEDD-----GFKVEAFPLDHSI-----PSLGYRFEEKD 150 (299)
T ss_pred CceEEEECCccHHHHHHHHHHHcccCCCceEEEEEccCCCceEecC-----CEEEEEEEcCCCC-----ceEEEEEEECC
Confidence 1246677776665555432 0 2457788887 47665 8999999987632 24588887541
Q ss_pred ------------------------------------------------CcceEEEcCCCCCchhhhcc-cCCcEEEEccC
Q 020191 228 ------------------------------------------------GQLTLYYEPHCVYNQNFLEK-ERSDIIITPVI 258 (329)
Q Consensus 228 ------------------------------------------------~~~~i~~sGDt~~~~~~~~~-~~~Dl~~l~~~ 258 (329)
.+.+|+|+||+++.+.+.+. .++|++++++.
T Consensus 151 ~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~~~~~~~dlLi~E~~ 230 (299)
T TIGR02651 151 RPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCEEVIEFAKNADLLIHEAT 230 (299)
T ss_pred CCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCChHHHHHHHcCCCEEEEECC
Confidence 13589999999998876654 48999999973
Q ss_pred cccCC---C---ccccCCHHHHHHHHHHcCCCEEEEeecccccCccchhhhhcccCCHHHHHHHHHHhcCC
Q 020191 259 KQLLP---K---FTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKCKIYKCYDR 323 (329)
Q Consensus 259 g~~~~---~---~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~~~~~~~~~~~~~~f~~~~~~~~~~ 323 (329)
|.. . ...|++++||++++++.+++.++.+|++.- ..+.+++.+.+++.+++
T Consensus 231 --~~~~~~~~~~~~~H~t~~~a~~~~~~~~~k~lvltH~s~~------------~~~~~~~~~~~~~~~~~ 287 (299)
T TIGR02651 231 --FLDEDKKLAKEYGHSTAAQAAEIAKEANVKRLILTHISPR------------YSDEEELLEEAKKIFPN 287 (299)
T ss_pred --CCchhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEecccc------------cCChHHHHHHHHHhCCC
Confidence 322 1 135999999999999999999999999852 12356666666666654
No 8
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.77 E-value=2.8e-17 Score=149.54 Aligned_cols=177 Identities=18% Similarity=0.216 Sum_probs=123.3
Q ss_pred cCcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhh-CCCce
Q 020191 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM-SPNLK 163 (329)
Q Consensus 85 Ghss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~-~p~~~ 163 (329)
..+|++|+.++.+||||| |... + .+. +. ..+||+|||||.|.||+ .++..+... .+.++
T Consensus 36 ~~~s~li~~~~~~iLiD~---G~~~-----~----~~~---~~---~~~i~~i~iTH~H~DHi--~gl~~l~~~~~~~i~ 95 (250)
T PRK11244 36 RPCSALIEFNGARTLIDA---GLPD-----L----AER---FP---PGSLQQILLTHYHMDHV--QGLFPLRWGVGDPIP 95 (250)
T ss_pred ceeEEEEEECCCEEEEEC---CChH-----H----hhc---CC---cccCCEEEEccCchhhh--ccHHHHHhhcCCcee
Confidence 356899999999999999 4211 1 111 11 24789999999999995 566555322 23578
Q ss_pred EEEcCChHH---HHhhcC-Cce-EEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcceEEEEecCCcceEEEcCCC
Q 020191 164 VIATPNAKT---LLDPLF-QNV-TYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHC 238 (329)
Q Consensus 164 v~~~~~~~~---~L~~~~-~~i-~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt 238 (329)
+|+++.... .++..+ .+. .++++++.++++ +++|+++|..|.. ...||+|+.++ .+|+|+|||
T Consensus 96 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~I~~~~~~H~~-----~s~g~~i~~~~--~~i~ysgDt 163 (250)
T PRK11244 96 VYGPPDPEGCDDLFKHPGILDFSHPLEPFEPFDLG-----GLQVTPLPLNHSK-----LTFGYLLETAH--SRVAYLTDT 163 (250)
T ss_pred EEeCCchhhHHHHhcCccccccccccCCCCCeeEC-----CEEEEEEeeCCCc-----ceeEEEEecCC--eEEEEEcCC
Confidence 888765322 222211 122 357889999997 8999999986642 25799999754 599999999
Q ss_pred CCc-hhhhc---ccCCcEEEEccCcccCC-CccccCCHHHHHHHHHHcCCCEEEEeeccc
Q 020191 239 VYN-QNFLE---KERSDIIITPVIKQLLP-KFTLVSGQEDAVKLAKLLHAKFIVPMKNGD 293 (329)
Q Consensus 239 ~~~-~~~~~---~~~~Dl~~l~~~g~~~~-~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~ 293 (329)
++. +.+.+ ..++|++++++...-.. ....|+++++++++++.++++.++++|++.
T Consensus 164 ~~~~~~~~~~~~~~~~Dlli~e~~~~~~~~~~~~H~~~~~a~~~a~~~~~k~lvltH~~~ 223 (250)
T PRK11244 164 VGLPEDTLKFLRNNQPDLLVLDCSHPPQEDAPRNHNDLTTALAIIEVLRPPRVILTHISH 223 (250)
T ss_pred CCCCHHHHHHHhcCCCCEEEEeCcCCCCCCCCCCCCCHHHHHHHHHhcCCceEEEEcccC
Confidence 875 33332 24899999997321110 123499999999999999999999999964
No 9
>PRK02113 putative hydrolase; Provisional
Probab=99.75 E-value=4.3e-17 Score=148.40 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=123.7
Q ss_pred CcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhh--hCCCce
Q 020191 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSK--MSPNLK 163 (329)
Q Consensus 86 hss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~--~~p~~~ 163 (329)
.+|++|+.+|.+||||+ |.... .++. . .++.++|+|||||.|+||+ .++..+.. +..+++
T Consensus 35 ~~s~li~~~~~~iLiD~---G~g~~----------~~l~--~-~~~~~id~I~lTH~H~DH~--~gl~~l~~~~~~~~~~ 96 (252)
T PRK02113 35 RTSALVETEGARILIDC---GPDFR----------EQML--R-LPFGKIDAVLITHEHYDHV--GGLDDLRPFCRFGEVP 96 (252)
T ss_pred eeEEEEEECCeEEEEEC---CchHH----------HHHH--h-cCccccCEEEECCCChhhh--CCHHHHHHhccCCCce
Confidence 67899999999999999 64320 1110 1 1456889999999999995 55544421 123678
Q ss_pred EEEcCChHHHHhhcC--------------CceEEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcceEEEEecCCc
Q 020191 164 VIATPNAKTLLDPLF--------------QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQ 229 (329)
Q Consensus 164 v~~~~~~~~~L~~~~--------------~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~ 229 (329)
||+++...+.|++.. .+++++++|+.++++ +++|+++|..|... ...||.+ +
T Consensus 97 i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~i~~~~~~H~~~----~~~gy~i---~-- 162 (252)
T PRK02113 97 IYAEQYVAERLRSRMPYCFVEHSYPGVPNIPLREIEPDRPFLVN-----HTEVTPLRVMHGKL----PILGYRI---G-- 162 (252)
T ss_pred EEECHHHHHHHHhhCCeeeccCCCCCCcceeeEEcCCCCCEEEC-----CeEEEEEEecCCCc----cEEEEEe---C--
Confidence 998877666654320 246788899999997 89999998865311 2457878 2
Q ss_pred ceEEEcCCCCCc-hhhhc-ccCCcEEEEccCcccCCCccccCCHHHHHHHHHHcCCCEEEEeeccc
Q 020191 230 LTLYYEPHCVYN-QNFLE-KERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGD 293 (329)
Q Consensus 230 ~~i~~sGDt~~~-~~~~~-~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~ 293 (329)
++.|+||+.+. +...+ ..+.|+++++.. +......|+++++++++++++++|.++.+|++.
T Consensus 163 -~i~y~~Dt~~~~~~~~~~~~~~DlLi~e~~--~~~~~~~H~t~~~a~~~~~~~~~k~l~l~H~s~ 225 (252)
T PRK02113 163 -KMAYITDMLTMPEEEYEQLQGIDVLVMNAL--RIAPHPTHQSLEEALENIKRIGAKETYLIHMSH 225 (252)
T ss_pred -CEEEccCCCCCCHHHHHHhcCCCEEEEhhh--cCCCCCCcCCHHHHHHHHHHhCCCEEEEEcccc
Confidence 78999999864 33332 248999999852 222223599999999999999999999999975
No 10
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.75 E-value=1e-16 Score=144.80 Aligned_cols=176 Identities=18% Similarity=0.167 Sum_probs=121.9
Q ss_pred CcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhh-CCCceE
Q 020191 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM-SPNLKV 164 (329)
Q Consensus 86 hss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~-~p~~~v 164 (329)
.+|++|+.+|.+||||+ |... + .+. +. ..+||+|||||.|.||+ .++..+... ..+++|
T Consensus 27 ~~s~~i~~~~~~iliD~---G~~~-----~----~~~---~~---~~~id~i~iTH~H~DHi--~gl~~l~~~~~~~~~v 86 (238)
T TIGR03307 27 PCSAVIEFNGARTLIDA---GLTD-----L----AER---FP---PGSLQAILLTHYHMDHV--QGLFPLRWGVGEPIPV 86 (238)
T ss_pred ceEEEEEECCcEEEEEC---CChh-----H----hhc---cC---ccCCCEEEEecCchhhh--cchHHHHHhcCCceeE
Confidence 46789999999999999 4211 1 111 11 23789999999999996 555444322 135788
Q ss_pred EEcCChHH---HHhhcC-Cce-EEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcceEEEEecCCcceEEEcCCCC
Q 020191 165 IATPNAKT---LLDPLF-QNV-TYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCV 239 (329)
Q Consensus 165 ~~~~~~~~---~L~~~~-~~i-~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~ 239 (329)
|+++.... .++..+ .+. .++.+++.++++ +++|+++|..|... ..||+|+.++ .+++|+||+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~H~~~-----~~g~~i~~~~--~~i~y~gDt~ 154 (238)
T TIGR03307 87 YGPPDEEGCDDLFKHPGILDFSKPLEAFEPFDLG-----GLRVTPLPLVHSKL-----TFGYLLETDG--QRVAYLTDTA 154 (238)
T ss_pred EeCchHhhHHHHhcCcccccccccccCCceEEEC-----CEEEEEEecCCCCc-----ceEEEEecCC--cEEEEEecCC
Confidence 88765432 222111 122 347788899997 89999999876432 4699998754 5999999998
Q ss_pred Cch-hhhcc---cCCcEEEEccCccc-CCCccccCCHHHHHHHHHHcCCCEEEEeeccc
Q 020191 240 YNQ-NFLEK---ERSDIIITPVIKQL-LPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGD 293 (329)
Q Consensus 240 ~~~-~~~~~---~~~Dl~~l~~~g~~-~~~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~ 293 (329)
+.. .+.+. .++|+++++++..- ......|+++++++++++.++++.++.+|++.
T Consensus 155 ~~~~~~~~~~~~~~~D~li~e~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~lil~H~~~ 213 (238)
T TIGR03307 155 GLPPDTEAFLKNHPLDVLILDCSHPPQSDAPRNHNDLTRALAINEQLRPKQVILTHISH 213 (238)
T ss_pred CCCHHHHHHHhcCCCCEEEEeCCcCccccCCCCcCCHHHHHHHHHHcCCCEEEEEeccc
Confidence 643 33332 37999999973211 11123599999999999999999999999975
No 11
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.70 E-value=9.1e-16 Score=143.51 Aligned_cols=201 Identities=13% Similarity=0.052 Sum_probs=136.4
Q ss_pred cCcEEEEEeC----CcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhh---
Q 020191 85 EGNSWLWDLD----GVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSK--- 157 (329)
Q Consensus 85 Ghss~li~~~----g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~--- 157 (329)
+.+|++|+.+ +.+||||+ |.... +++....+ ++.+||+|+|||.|.||+ .++..|..
T Consensus 16 ~~s~~lv~~~~~~~~~~iLiD~---G~g~~----------~~l~~~~i-~~~~id~IfiTH~H~DHi--~Gl~~ll~~~~ 79 (303)
T TIGR02649 16 NVTAILLNLQHPTQSGLWLFDC---GEGTQ----------HQLLHTAF-NPGKLDKIFISHLHGDHL--FGLPGLLCSRS 79 (303)
T ss_pred CccEEEEEccCCCCCCEEEEEC---CccHH----------HHHHHhCC-CHHHCcEEEEeCCChhhc--CCHHHHHHHHH
Confidence 5689999874 37899999 64331 11111111 234789999999999995 66655421
Q ss_pred ---hCCCceEEEcCChHHHHhhc-------C---CceEEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcceEEEE
Q 020191 158 ---MSPNLKVIATPNAKTLLDPL-------F---QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVN 224 (329)
Q Consensus 158 ---~~p~~~v~~~~~~~~~L~~~-------~---~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~ 224 (329)
+...++||+++...+.++.. . .+++++..++.+..+ +++|+++|..|.. ...||+|+
T Consensus 80 ~~~~~~~l~Iygp~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~v~~~~~~H~~-----~~~gy~i~ 149 (303)
T TIGR02649 80 MSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDG-----LRKVTAYPLEHPL-----ECYGYRIE 149 (303)
T ss_pred hcCCCCCeEEEechhHHHHHHHHHHhcccccCCceEEEEcCCCceEecC-----CeEEEEEEccCcc-----ceEEEEEe
Confidence 11246788877665555432 1 245677777777664 7999999886532 24688887
Q ss_pred ecC------------------------------------------------CcceEEEcCCCCCchhhhcc-cCCcEEEE
Q 020191 225 SSQ------------------------------------------------GQLTLYYEPHCVYNQNFLEK-ERSDIIIT 255 (329)
Q Consensus 225 ~~~------------------------------------------------~~~~i~~sGDt~~~~~~~~~-~~~Dl~~l 255 (329)
..+ .+.+|.|+|||.+.+.+.+. .+.|++++
T Consensus 150 ~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~~~~~~adlLi~ 229 (303)
T TIGR02649 150 EHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDAALDLAKGVDVMVH 229 (303)
T ss_pred ccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCChHHHHHHhcCCCEEEE
Confidence 532 24689999999997766554 49999999
Q ss_pred ccCcccCCC------ccccCCHHHHHHHHHHcCCCEEEEeecccccCccchhhhhcccCCHHHHHHHHHHhcCC
Q 020191 256 PVIKQLLPK------FTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKCKIYKCYDR 323 (329)
Q Consensus 256 ~~~g~~~~~------~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~~~~~~~~~~~~~~f~~~~~~~~~~ 323 (329)
++. |... -..|++++||++++++.+++.++.+|++.-.. ....+.+.+..++.+++
T Consensus 230 Eat--~~~~~~~~a~~~~H~t~~~a~~~a~~~~~k~lvL~H~s~~y~----------~~~~~~~~~~~~~~~~~ 291 (303)
T TIGR02649 230 EAT--LDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYD----------DKGCQHLLRECRSIFPA 291 (303)
T ss_pred ecc--CChhhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEEeccccC----------CccHHHHHHHHHHHCCC
Confidence 973 3221 12499999999999999999999999975221 22356666777777664
No 12
>PRK00055 ribonuclease Z; Reviewed
Probab=99.68 E-value=7.8e-16 Score=140.95 Aligned_cols=206 Identities=17% Similarity=0.152 Sum_probs=123.3
Q ss_pred eEEEEEc-----------CcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCcccc--CCCCCCCCCCCCEEEEeCCCCC
Q 020191 79 FKLTYLE-----------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFL--KSFQLSDLPQVDCLLITQSLDD 145 (329)
Q Consensus 79 ~~it~lG-----------hss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~--~~~~~~~lp~iD~VlISH~H~D 145 (329)
|+|+.|| .+|++|+.++.+||||+ |.... +++ ..+ ++.++|+|+|||.|.|
T Consensus 2 m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~---G~g~~----------~~l~~~~~---~~~~i~~i~lTH~H~D 65 (270)
T PRK00055 2 MELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDC---GEGTQ----------RQLLKTGI---KPRKIDKIFITHLHGD 65 (270)
T ss_pred eEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEEC---CHHHH----------HHHHHcCC---CHHHCCEEEEeCCCch
Confidence 6677776 78999999999999999 64321 111 012 2347899999999999
Q ss_pred CCChhcHHHhhh------hCCCceEEEcCChHHHHhhc---CC----ceEEeCCCceEE--------eccc----C-CCc
Q 020191 146 HCHLKTLKPLSK------MSPNLKVIATPNAKTLLDPL---FQ----NVTYVEPGQSSE--------IEGR----N-GSK 199 (329)
Q Consensus 146 Hld~~tl~~l~~------~~p~~~v~~~~~~~~~L~~~---~~----~i~~l~~ge~~~--------~~~~----~-~~~ 199 (329)
|+ .++..|.. +...++||+++.....++.. .. .+.+-+....+. +... . ..+
T Consensus 66 Hi--~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 143 (270)
T PRK00055 66 HI--FGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVETLLRASGSLGYRIAEKDKPGKLDAEKLKALGVPPGPLFGKLKRG 143 (270)
T ss_pred hh--CcHHHHHHHhhhcCCCceEEEECCccHHHHHHHHHHHhhceeEEEEEcCCCCCCCHHHHHHCCCCCCchHHHhhCC
Confidence 95 67765542 11246688776655554432 00 111100000000 0000 0 001
Q ss_pred eEEEEecCCCCCCCCCCCcceEEEEecCCcceEEEcCCCCCchhhhcc-cCCcEEEEccCcccCCC------ccccCCHH
Q 020191 200 LRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEK-ERSDIIITPVIKQLLPK------FTLVSGQE 272 (329)
Q Consensus 200 l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~-~~~Dl~~l~~~g~~~~~------~~~h~~~~ 272 (329)
.++........ ....+|.++.++ .+|+|+||+++.+.+.+. .++|++++++. |... ...|++++
T Consensus 144 ~~~~~~~~~~i-----~~~~~~~~~~~g--~~~~y~~Dt~~~~~~~~~~~~~d~li~E~~--~~~~~~~~~~~~~H~~~~ 214 (270)
T PRK00055 144 EDVTLEDGRII-----NPADVLGPPRKG--RKVAYCGDTRPCEALVELAKGADLLVHEAT--FGDEDEELAKEYGHSTAR 214 (270)
T ss_pred CeEEeCCCcEE-----eHHHeeccCCCC--cEEEEeCCCCCcHHHHHHhCCCCEEEEecc--CCcchhhHHhhcCCCCHH
Confidence 11111000000 012466666643 599999999998776654 48999999973 3221 13499999
Q ss_pred HHHHHHHHcCCCEEEEeecccccCccchhhhhcccCCHHHHHHHHHHhcC
Q 020191 273 DAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKCKIYKCYD 322 (329)
Q Consensus 273 ea~~~~~~l~~k~~ip~H~~~f~~~g~~~~~~~~~~~~~~f~~~~~~~~~ 322 (329)
++++++++++++.++++|++.-. ..+.+++.+.+++.++
T Consensus 215 ~a~~~~~~~~~~~~vl~H~~~~~-----------~~~~~~~~~~~~~~~~ 253 (270)
T PRK00055 215 QAAEIAKEAGVKRLILTHFSPRY-----------TGDPEELLKEAREIFP 253 (270)
T ss_pred HHHHHHHHcCCCEEEEEeecccc-----------CCCHHHHHHHHHHHcC
Confidence 99999999999999999998521 1156777777776653
No 13
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.61 E-value=3.3e-14 Score=132.78 Aligned_cols=193 Identities=16% Similarity=0.117 Sum_probs=122.9
Q ss_pred cCcEEEEEeCCc-EEEEcCccCCCCCCCCCccccCCccccCCCCCC---CCCCCCEEEEeCCCCCCCChhcHHHhhhhCC
Q 020191 85 EGNSWLWDLDGV-KVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLS---DLPQVDCLLITQSLDDHCHLKTLKPLSKMSP 160 (329)
Q Consensus 85 Ghss~li~~~g~-~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~---~lp~iD~VlISH~H~DHld~~tl~~l~~~~p 160 (329)
..+|++|+.+|. +||||+ |+... .+. .+...+.+. ++.++|+|||||.|+|| +.+|..|... .
T Consensus 38 ~~ss~li~~~g~~~iLiD~---G~g~~-~ql------~~~~~~~~~~g~~~~~ldav~lTH~H~DH--i~Gl~~l~~~-~ 104 (302)
T PRK05184 38 TQSSIAVSADGEDWVLLNA---SPDIR-QQI------QATPALQPARGLRDTPIAAVVLTDGQIDH--TTGLLTLREG-Q 104 (302)
T ss_pred cccEEEEEcCCCEEEEEEC---ChhHH-HHH------HhchhcCccccCCcccccEEEEeCCchhh--hhChHhhccC-C
Confidence 367899987664 699999 65431 110 111011111 23478999999999999 5778777654 3
Q ss_pred CceEEEcCChHHHHhhc---C--------CceEEeCCCceEEecccCCCceEEEEecCCCCCCCC--------CCCcceE
Q 020191 161 NLKVIATPNAKTLLDPL---F--------QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPW--------QRPENGY 221 (329)
Q Consensus 161 ~~~v~~~~~~~~~L~~~---~--------~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~--------~~~~~g~ 221 (329)
.++||+++...+.+++. + .++.++..++.++++. .++++|+++|..|.-+.| .....||
T Consensus 105 ~l~Vyg~~~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~--~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gy 182 (302)
T PRK05184 105 PFPVYATPAVLEDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPG--LPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGL 182 (302)
T ss_pred CeEEEeCHHHHHHHHhcCCcccccccccceeeEEecCCCceEecC--CCCcEEEEEEcCCCCCcccccccCCCCCCeEEE
Confidence 68899988777766553 1 1345677777777731 127999999986431111 1125699
Q ss_pred EEEecCCcceEEEcCCC-CCchhhhcc-cCCcEEEEccCcccCC-------------CccccCCH---HHHHHHHHHcCC
Q 020191 222 LVNSSQGQLTLYYEPHC-VYNQNFLEK-ERSDIIITPVIKQLLP-------------KFTLVSGQ---EDAVKLAKLLHA 283 (329)
Q Consensus 222 ~i~~~~~~~~i~~sGDt-~~~~~~~~~-~~~Dl~~l~~~g~~~~-------------~~~~h~~~---~ea~~~~~~l~~ 283 (329)
.|+...++.+++|++|+ .+.+.+.+. .+.|++++++. -|.. ....||+. .++++.+++.++
T Consensus 183 ri~~~~~g~~~~y~tD~~~~~~~~~~~~~gaDlli~da~-~~~~~~~~~~g~~~~~~~~~~H~~~~~~~~~l~~~~~~~~ 261 (302)
T PRK05184 183 RIEDRATGKRLFYAPGLAEVTDALRARLAGADCVLFDGT-LWTDDEMIRAGVGTKTGRRMGHLPQSGPGGMIAALARLPI 261 (302)
T ss_pred EEEecCCCcEEEEECCCCCCCHHHHHHHhcCCEEEEeCC-CCcCHHHHhcccCccccccCCCCCCCChHHHHHHhhcCCC
Confidence 99621123578888665 666655443 48999999863 1211 11237774 467788888889
Q ss_pred CEEEEeeccc
Q 020191 284 KFIVPMKNGD 293 (329)
Q Consensus 284 k~~ip~H~~~ 293 (329)
|+++.+|...
T Consensus 262 k~l~ltHl~h 271 (302)
T PRK05184 262 ARKILIHINN 271 (302)
T ss_pred CcEEEEEcCC
Confidence 9999999974
No 14
>PRK02126 ribonuclease Z; Provisional
Probab=99.58 E-value=1.3e-13 Score=130.23 Aligned_cols=181 Identities=15% Similarity=0.196 Sum_probs=119.9
Q ss_pred EEEcCcEEEEEe--CCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhh-
Q 020191 82 TYLEGNSWLWDL--DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM- 158 (329)
Q Consensus 82 t~lGhss~li~~--~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~- 158 (329)
.-+..|+++|.. +|.+||||| |. . ++ +...++.+||+|||||.|+||+ .++..|...
T Consensus 12 g~~~dn~~~l~~~~~~~~iLiD~---G~-~-----------~~---l~~~~~~~i~~I~iTH~H~DHi--~Gl~~l~~~~ 71 (334)
T PRK02126 12 GPFDDPGLYVDFLFERRALLFDL---GD-L-----------HH---LPPRELLRISHIFVSHTHMDHF--IGFDRLLRHC 71 (334)
T ss_pred CCCCCcEEEEEECCCCeEEEEcC---CC-H-----------HH---HhhcCCCccCEEEEcCCChhHh--CcHHHHHHHh
Confidence 445788998886 489999999 64 1 11 1123456899999999999995 666666433
Q ss_pred ---CCCceEEEcCChHHHHhhcC--------------CceEEeC----------------------------CCceEEec
Q 020191 159 ---SPNLKVIATPNAKTLLDPLF--------------QNVTYVE----------------------------PGQSSEIE 193 (329)
Q Consensus 159 ---~p~~~v~~~~~~~~~L~~~~--------------~~i~~l~----------------------------~ge~~~~~ 193 (329)
.+.+++|+++.....++... ..+..+. .+..++.
T Consensus 72 ~~r~~~l~iygp~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (334)
T PRK02126 72 LGRPRRLRLFGPPGFADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDE- 150 (334)
T ss_pred ccCCCCeEEEECHHHHHHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeC-
Confidence 13578888877665443320 1122111 1111222
Q ss_pred ccCCCceEEEEecCCCCCCCCCCCcceEEEEec-----------------------------------------------
Q 020191 194 GRNGSKLRVKATAGPVLGPPWQRPENGYLVNSS----------------------------------------------- 226 (329)
Q Consensus 194 ~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~----------------------------------------------- 226 (329)
++++|++.|..|.-+ ..||.|+.+
T Consensus 151 ----~~~~V~a~~~~H~vp-----~~gy~~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~ 221 (334)
T PRK02126 151 ----PWFRVRAAFLDHGIP-----CLAFALEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGG 221 (334)
T ss_pred ----CCEEEEEEEccCCCc-----eeEEEEEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCc
Confidence 389999999865322 346666531
Q ss_pred ------------------CCcceEEEcCCCCCchh----hhcc-cCCcEEEEccCcccCC------CccccCCHHHHHHH
Q 020191 227 ------------------QGQLTLYYEPHCVYNQN----FLEK-ERSDIIITPVIKQLLP------KFTLVSGQEDAVKL 277 (329)
Q Consensus 227 ------------------~~~~~i~~sGDt~~~~~----~~~~-~~~Dl~~l~~~g~~~~------~~~~h~~~~ea~~~ 277 (329)
..+.+|.|+|||.+.+. +.+. .+.|++++++. |.. .-..|++++++.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~v~y~gDT~~~~~~~~~l~~~a~~aDlLI~Eat--~~~~~~~~a~~~gH~t~~~a~~l 299 (334)
T PRK02126 222 EHERVRPLGELKERVLRIEPGQKIGYVTDIGYTEENLARIVELAAGVDLLFIEAV--FLDEDAEKARRKNHLTARQAGRL 299 (334)
T ss_pred cceeEecHHHHHHHhccCCCCCEEEEECCCCCCcccHHHHHHHHcCCCEEEEEcc--cChHHhhhcccCCCCCHHHHHHH
Confidence 13469999999998763 3332 48999999862 322 11349999999999
Q ss_pred HHHcCCCEEEEeecccc
Q 020191 278 AKLLHAKFIVPMKNGDL 294 (329)
Q Consensus 278 ~~~l~~k~~ip~H~~~f 294 (329)
++..+++.++.+|.+.-
T Consensus 300 A~~a~vk~LvLtH~sp~ 316 (334)
T PRK02126 300 AREAGVKRLLPFHFSPR 316 (334)
T ss_pred HHHcCCCEEEEEecCcc
Confidence 99999999999999863
No 15
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.54 E-value=2.2e-13 Score=127.01 Aligned_cols=194 Identities=13% Similarity=0.064 Sum_probs=122.4
Q ss_pred CcEEEEEe-CCcEEEEcCccCCCCCCCCCccccCCccccCCCC---CCCCCCCCEEEEeCCCCCCCChhcHHHhhhhCCC
Q 020191 86 GNSWLWDL-DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQ---LSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPN 161 (329)
Q Consensus 86 hss~li~~-~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~---~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~ 161 (329)
.+|++|+. ++.+||||+ |+... - -+ .++..+. --++.+||+|||||.|+|| +.+|..|.++. .
T Consensus 38 rss~ll~~~g~~~iLID~---Gpd~r-~-ql-----~~~~~~~~~~gl~~~~IdaI~lTH~H~DH--i~GL~~L~~~~-~ 104 (302)
T TIGR02108 38 QSSIAVSADGERWVLLNA---SPDIR-Q-QI-----QATPALHPQRGLRHTPIAGVVLTDGEIDH--TTGLLTLREGQ-P 104 (302)
T ss_pred ccEEEEEeCCCEEEEEEC---CHHHH-H-HH-----HhCcccccccCCCcccCCEEEEeCCCcch--hhCHHHHcCCC-C
Confidence 67889976 446899999 53220 0 00 1111110 0123478999999999999 57788887653 7
Q ss_pred ceEEEcCChHHHHhhc--CC-------ceEEeCCCceEEecccCCCceEEEEecCCCC---------CCCCCCCcceEEE
Q 020191 162 LKVIATPNAKTLLDPL--FQ-------NVTYVEPGQSSEIEGRNGSKLRVKATAGPVL---------GPPWQRPENGYLV 223 (329)
Q Consensus 162 ~~v~~~~~~~~~L~~~--~~-------~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~---------g~~~~~~~~g~~i 223 (329)
++||+++...+.|++. +. +...+..++.+.+.....++++|+++|..|. |+.......||+|
T Consensus 105 lpVya~~~t~~~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i 184 (302)
T TIGR02108 105 FTLYATEMVLQDLSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKI 184 (302)
T ss_pred ceEEECHHHHHHHHhCCCccccchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEE
Confidence 9999999988877531 11 1245566667766410012599999998632 1111113569999
Q ss_pred EecCCcceEEEcCCCCC-chhhhc-ccCCcEEEEccCcccCC-------------CccccCCHH---HHHHHHHHcCCCE
Q 020191 224 NSSQGQLTLYYEPHCVY-NQNFLE-KERSDIIITPVIKQLLP-------------KFTLVSGQE---DAVKLAKLLHAKF 285 (329)
Q Consensus 224 ~~~~~~~~i~~sGDt~~-~~~~~~-~~~~Dl~~l~~~g~~~~-------------~~~~h~~~~---ea~~~~~~l~~k~ 285 (329)
+.++.+.++.|++|+++ .+...+ ..+.|+++++.. -|.. ...-|++.+ ++++.+...+++.
T Consensus 185 ~~~~~g~~~~y~tD~g~~~~~~~~~l~~~d~liida~-~~~d~e~l~~g~ypri~~~~gHls~~~~~~al~~~~~~~~~~ 263 (302)
T TIGR02108 185 EDGTTGKRLFYIPGCAEITDDLKARMAGADLVFFDGT-LWRDDEMIRAGVGTKTGRRMGHVSMSGEGGSLAVLADLEIAR 263 (302)
T ss_pred EeCCCCcEEEEECCCCCCCHHHHHHHhCCCEEEEeCC-CCCcHHHHhcCCCCCcCCCCCCCCccchHHHHHHhhcCCCCc
Confidence 97521369999999985 334333 347899999862 1111 111266554 6677777789999
Q ss_pred EEEeeccc
Q 020191 286 IVPMKNGD 293 (329)
Q Consensus 286 ~ip~H~~~ 293 (329)
++.+|.+.
T Consensus 264 ~~l~Hl~h 271 (302)
T TIGR02108 264 KVLIHINN 271 (302)
T ss_pred EEEEecCC
Confidence 99999986
No 16
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.52 E-value=7.6e-13 Score=134.35 Aligned_cols=192 Identities=16% Similarity=0.192 Sum_probs=121.3
Q ss_pred CCceEEEEEc------CcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCC--CCCCCCCEEEEeCCCCCCC
Q 020191 76 TDVFKLTYLE------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQL--SDLPQVDCLLITQSLDDHC 147 (329)
Q Consensus 76 ~~~~~it~lG------hss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~--~~lp~iD~VlISH~H~DHl 147 (329)
.+.|+|+.+| .||+||+.++.+||+||++..... . ...+|.+.. .++.++|+|||||.|.||
T Consensus 172 ~~~m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~-~--------~~~~p~l~~~~~~~~~IDaVlITHaH~DH- 241 (630)
T TIGR03675 172 DRWVRVTALGGFREVGRSALLLSTPESRILLDCGVNVGAN-G--------DNAYPYLDVPEFQLDELDAVVITHAHLDH- 241 (630)
T ss_pred CCeEEEEEEecCCccCCCEEEEEECCCEEEEECCCCcccc-c--------hhhcccccccCCCHHHCcEEEECCCCHHH-
Confidence 3458999986 599999999999999995432110 0 011121111 124589999999999999
Q ss_pred ChhcHHHhhhhCCCceEEEcCChHHHHh----h-------c--------------CCceEEeCCCceEEecccCCCceEE
Q 020191 148 HLKTLKPLSKMSPNLKVIATPNAKTLLD----P-------L--------------FQNVTYVEPGQSSEIEGRNGSKLRV 202 (329)
Q Consensus 148 d~~tl~~l~~~~p~~~v~~~~~~~~~L~----~-------~--------------~~~i~~l~~ge~~~~~~~~~~~l~i 202 (329)
.+.+..|.+...+.+||+++.+...++ . . ..+...++.++.+++. +++++
T Consensus 242 -iG~LP~L~k~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~----~~i~v 316 (630)
T TIGR03675 242 -SGLVPLLFKYGYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIA----PDIKL 316 (630)
T ss_pred -HhhHHHHHHhCCCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEec----CCEEE
Confidence 588888876433678999886544211 0 0 0246788999999985 48999
Q ss_pred EEecCCCCCCCCCCCcceEEEEecCCcceEEEcCCCCCchhh--h----cccCCcEEEEccCcccCCCccccCCHHHHH-
Q 020191 203 KATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNF--L----EKERSDIIITPVIKQLLPKFTLVSGQEDAV- 275 (329)
Q Consensus 203 ~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~--~----~~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~- 275 (329)
++.++.|.- ..+.+.+...+++.+|+|+||.++.... . ...++|+++++.+ |...-..|...+++.
T Consensus 317 t~~~AGHil-----Gsa~~~~~i~dg~~~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~EST--Yg~~~~~~~~r~~~e~ 389 (630)
T TIGR03675 317 TFYNAGHIL-----GSAIAHLHIGDGLYNIVYTGDFKYEKTRLLDPAVNKFPRVETLIMEST--YGGRDDYQPSREEAEK 389 (630)
T ss_pred EEecCcccc-----CceEEEEEECCCCEEEEEeCCCCCCCCcCccchhhcCCCCCEEEEeCc--cCCCCCCCCCHHHHHH
Confidence 999886531 1344556654333599999998875431 1 2247999999862 321111233333332
Q ss_pred ---HHHHH---cCCCEEEEe
Q 020191 276 ---KLAKL---LHAKFIVPM 289 (329)
Q Consensus 276 ---~~~~~---l~~k~~ip~ 289 (329)
+.+.+ -+.+++||+
T Consensus 390 ~l~~~I~~tl~~gG~VLIP~ 409 (630)
T TIGR03675 390 ELIKVVNETIKRGGKVLIPV 409 (630)
T ss_pred HHHHHHHHHHhCCCEEEEEe
Confidence 22222 266788886
No 17
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.51 E-value=7.8e-13 Score=129.23 Aligned_cols=190 Identities=13% Similarity=0.145 Sum_probs=121.8
Q ss_pred cCcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCC--CCCCCCCCEEEEeCCCCCCCChhcHHHhhhhCCCc
Q 020191 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQ--LSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNL 162 (329)
Q Consensus 85 Ghss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~--~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~ 162 (329)
|.||++|+.++..||||++.. . +-.-+. +.....|.+. .+...++|+|+|||.|.|| ++++..|.++.+.+
T Consensus 13 G~n~~ll~~~~~~iliD~G~~---~-~~~~~~-g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DH--iggl~~l~~~~~~~ 85 (422)
T TIGR00649 13 GKNMYVVEIDDDVFIFDAGIL---F-PEDAML-GVDGVIPDFSYLQENQDKVKGIFITHGHEDH--IGAVPYLFHTVGFP 85 (422)
T ss_pred CCeEEEEEECCeEEEEeCCCC---C-Cccccc-CCccccCCHHHHHhccccCCEEEECCCChHH--hCcHHHHHHhCCCC
Confidence 689999999999999999432 1 100000 0011112111 1123489999999999999 58888887765446
Q ss_pred eEEEcCChHHHHhhc--------CCceEEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcceEEEEecCCcceEEE
Q 020191 163 KVIATPNAKTLLDPL--------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYY 234 (329)
Q Consensus 163 ~v~~~~~~~~~L~~~--------~~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~ 234 (329)
++|+++.....++.. ..++.+++.++.++++ ++++|+++++.|+.+ ...||.++.++ .+++|
T Consensus 86 ~Vy~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig----~~~~v~~~~~~H~~p----~s~g~~i~~~~--~~ivy 155 (422)
T TIGR00649 86 PIYGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETG----ENHTIEFIRITHSIP----DSVGFALHTPL--GYIVY 155 (422)
T ss_pred eEEeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeC----CceEEEEEECCCCCc----ceEEEEEEeCC--cEEEE
Confidence 899988877655431 1346788899999995 269999999876422 24688898754 48999
Q ss_pred cCCCCCch--------h---hhcc--cCCcEEEEccCcccCCCcc--ccCCHHHHHHHHHHcCCCEEEEeecc
Q 020191 235 EPHCVYNQ--------N---FLEK--ERSDIIITPVIKQLLPKFT--LVSGQEDAVKLAKLLHAKFIVPMKNG 292 (329)
Q Consensus 235 sGDt~~~~--------~---~~~~--~~~Dl~~l~~~g~~~~~~~--~h~~~~ea~~~~~~l~~k~~ip~H~~ 292 (329)
+||+.+.. . +.+. .++|+++.+.+....+... -|...++..+.+++.+. .++..|++
T Consensus 156 tGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~~~~~e~~~~~~i~~~~~~~~~-~viv~~fa 227 (422)
T TIGR00649 156 TGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPGFTPSEAKVLEQLNDIFKNAKG-RVIVATFA 227 (422)
T ss_pred CCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-EEEEEEcc
Confidence 99986532 1 2222 2689999986432223222 13445555566655554 47778886
No 18
>PRK04286 hypothetical protein; Provisional
Probab=99.51 E-value=1.4e-12 Score=121.71 Aligned_cols=195 Identities=14% Similarity=0.174 Sum_probs=102.9
Q ss_pred CcEEEEEeCCcEEEEcCccCC-CCCCCCCccccCCcc---ccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHh---hhh
Q 020191 86 GNSWLWDLDGVKVLVDPILVG-NLDFGIPWLFDAGKK---FLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPL---SKM 158 (329)
Q Consensus 86 hss~li~~~g~~ILiDP~~sg-~~s~p~~~~~~~~~~---~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l---~~~ 158 (329)
+||++|+.++.+|||||+.+- +..++.|......++ ..+.+ .+.+.++|+|||||.|+||++.-....+ .++
T Consensus 15 ~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~~~ 93 (298)
T PRK04286 15 SMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKI-LEYAKKADVITISHYHYDHHTPFYEDPYELSDEE 93 (298)
T ss_pred eeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHh-hcccccCCEEEecCCccccCCCcccccccccccc
Confidence 589999999999999996431 000011111000000 00111 2445689999999999999742221100 111
Q ss_pred CCCceEEEcCChH--------H---------HHhhc--CCceEEeCCCceEEecccCCCceEEEEe-cCCCCCCCCCCCc
Q 020191 159 SPNLKVIATPNAK--------T---------LLDPL--FQNVTYVEPGQSSEIEGRNGSKLRVKAT-AGPVLGPPWQRPE 218 (329)
Q Consensus 159 ~p~~~v~~~~~~~--------~---------~L~~~--~~~i~~l~~ge~~~~~~~~~~~l~i~~~-p~~~~g~~~~~~~ 218 (329)
. .++++..+... + .+... ......+..++.+.++ +++|+++ |..| +.. ...
T Consensus 94 ~-~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig-----~~~V~~~~~v~H-~~~--~~~ 164 (298)
T PRK04286 94 I-PKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFG-----GTTIEFSPPVPH-GAD--GSK 164 (298)
T ss_pred c-hHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEEC-----CEEEEEeccCCC-CCC--CCc
Confidence 0 12222221111 0 11111 1134567778889987 8999877 4333 211 023
Q ss_pred ceEE----EEecCCcceEEEcCCCC--Cchhhhcc---cCCcEEEEccCcccCC--Cc---cccCCHHHHHHHHHHcCCC
Q 020191 219 NGYL----VNSSQGQLTLYYEPHCV--YNQNFLEK---ERSDIIITPVIKQLLP--KF---TLVSGQEDAVKLAKLLHAK 284 (329)
Q Consensus 219 ~g~~----i~~~~~~~~i~~sGDt~--~~~~~~~~---~~~Dl~~l~~~g~~~~--~~---~~h~~~~ea~~~~~~l~~k 284 (329)
.||+ |+.+ +.+++|+||++ +.+...+. .++|++++..--.|.. +. ..|+..+.+.+++.. ++|
T Consensus 165 ~Gy~i~~ri~~g--g~~~~~~gDt~~~~~~~~~~~l~~~d~dlLi~~~~p~~lk~~ri~~~~~h~s~~~~~~l~~~-~~k 241 (298)
T PRK04286 165 LGYVIMVRISDG--DESFVFASDVQGPLNDEAVEFILEKKPDVVIIGGPPTYLLGRRLSEEDLEKGIENLEEIVKN-TPE 241 (298)
T ss_pred cceEEEEEEEeC--CEEEEEECCCCCCCCHHHHHHHhcCCCCEEEeCCcchhhhhhhhccccHHHHHHHHHHHHhc-CCC
Confidence 4554 4553 36999999998 44444332 3889988853111221 11 124444444455444 999
Q ss_pred EEEEe-eccc
Q 020191 285 FIVPM-KNGD 293 (329)
Q Consensus 285 ~~ip~-H~~~ 293 (329)
.++.+ |.+.
T Consensus 242 ~liLtHHls~ 251 (298)
T PRK04286 242 TLILDHHLLR 251 (298)
T ss_pred EEEEeccccc
Confidence 99999 5543
No 19
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.47 E-value=2.7e-13 Score=115.92 Aligned_cols=168 Identities=17% Similarity=0.176 Sum_probs=107.0
Q ss_pred EEEcCcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhhCCC
Q 020191 82 TYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPN 161 (329)
Q Consensus 82 t~lGhss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~ 161 (329)
.+.+++|++|+.++.+|||||..... ...+ +.+..+. ..++|+|+|||.|.|| ++++..+.+. ++
T Consensus 2 ~~~~~~~~li~~~~~~iliD~g~~~~----~~~~-----~~l~~~~---~~~i~~i~iTH~H~DH--~~g~~~~~~~-~~ 66 (183)
T smart00849 2 GGVGVNSYLVEGDGGAILIDTGPGEA----EDLL-----AELKKLG---PKDIDAIILTHGHPDH--IGGLPELLEA-PG 66 (183)
T ss_pred CccceeEEEEEeCCceEEEeCCCChh----HHHH-----HHHHHcC---chhhcEEEecccCcch--hccHHHHHhC-CC
Confidence 35689999999999999999942211 0000 0011122 3589999999999999 5888888765 57
Q ss_pred ceEEEcCChHHHHhh---------c----CCceEEeCCCceEEecccCCCceEEEEecCC-CCCCCCCCCcceEEEEecC
Q 020191 162 LKVIATPNAKTLLDP---------L----FQNVTYVEPGQSSEIEGRNGSKLRVKATAGP-VLGPPWQRPENGYLVNSSQ 227 (329)
Q Consensus 162 ~~v~~~~~~~~~L~~---------~----~~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~-~~g~~~~~~~~g~~i~~~~ 227 (329)
+++|+++...+.++. . ..++..+..++++.++ +.+++.++.. +. . ...++.++.
T Consensus 67 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~h~-~----~~~~~~~~~-- 134 (183)
T smart00849 67 APVYAPEGTAELLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLG-----GLELEVIHTPGHT-P----GSIVLYLPE-- 134 (183)
T ss_pred CcEEEchhhhHHHhccchhccccCcCCCCCccceecCCCCEEEeC-----CceEEEEECCCCC-C----CcEEEEECC--
Confidence 889988777776652 1 2456778889999996 4555555442 11 1 133455543
Q ss_pred CcceEEEcCCCCCchhhhcccCCcEEEEccCcccCCCccccCCHHHHHHHHHHcCCCEEEEee
Q 020191 228 GQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMK 290 (329)
Q Consensus 228 ~~~~i~~sGDt~~~~~~~~~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H 290 (329)
.+++|+||+.+...... ...+ .+ .+ .+....++++.+.+...++++|.|
T Consensus 135 --~~vl~~gD~~~~~~~~~------~~~~-~~----~~-~~~~~~~~~~~~~~~~~~~i~~~H 183 (183)
T smart00849 135 --GKILFTGDLLFSGGIGR------TDDD-GG----DA-SASDSLESLLKLLALDPELVVPGH 183 (183)
T ss_pred --CCEEEECCeeeccCCCC------cccC-CC----Cc-cHHHHHHHHHHhhcCCccEeecCC
Confidence 48999999987654200 0000 01 11 122345667777777888898887
No 20
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.45 E-value=4.2e-12 Score=117.97 Aligned_cols=89 Identities=11% Similarity=0.075 Sum_probs=68.4
Q ss_pred EEecCCcceEEEcCCCCCchhhhccc-CCcEEEEccCcccCC------CccccCCHHHHHHHHHHcCCCEEEEeeccccc
Q 020191 223 VNSSQGQLTLYYEPHCVYNQNFLEKE-RSDIIITPVIKQLLP------KFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLD 295 (329)
Q Consensus 223 i~~~~~~~~i~~sGDt~~~~~~~~~~-~~Dl~~l~~~g~~~~------~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f~ 295 (329)
+.....|.+|.|+|||.+.+.+.+.. +.|+++.++. +.+ ....|++.+||.+++++.++|.++.+|.+..-
T Consensus 184 ~~~~~~G~~v~ysGDT~p~~~~~~~a~~aDlLiHEat--~~~~~~~~a~~~~HsT~~eAa~iA~~A~vk~LiLtH~s~ry 261 (292)
T COG1234 184 IGEPRKGKSVVYSGDTRPCDELIDLAKGADLLIHEAT--FEDDLEDLANEGGHSTAEEAAEIAKEAGVKKLILTHFSPRY 261 (292)
T ss_pred ccccCCCcEEEEECCCCCCHHHHHHhcCCCEEEEecc--CCchhhhHHhhcCCCCHHHHHHHHHHcCCCeEEEEeecccc
Confidence 44444457999999999999877664 9999999863 222 11239999999999999999999999998632
Q ss_pred CccchhhhhcccCCHHHHHHHHHHhcCCc
Q 020191 296 SKGFLASIIQSEGTVESFKCKIYKCYDRK 324 (329)
Q Consensus 296 ~~g~~~~~~~~~~~~~~f~~~~~~~~~~k 324 (329)
. .+.+++.+..++.++.+
T Consensus 262 ~-----------~~~~~~~~ea~~~f~~~ 279 (292)
T COG1234 262 P-----------KDDEELLKEARAIFPGE 279 (292)
T ss_pred c-----------chHHHHHHHHHHhCCCc
Confidence 1 35777778888888773
No 21
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.41 E-value=9e-13 Score=127.69 Aligned_cols=181 Identities=16% Similarity=0.151 Sum_probs=104.7
Q ss_pred CcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhhCCCceEE
Q 020191 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVI 165 (329)
Q Consensus 86 hss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v~ 165 (329)
.|||||+. +.++||||+...... .++ ..+.. .-++.+||+|++||.|.|| .+++..|.+.+|+++++
T Consensus 33 ~NsyLI~~-~~~vLIDtg~~~~~~---~~~-----~~l~~--~~~~~~Id~IilTH~H~DH--iggl~~l~~~~p~a~V~ 99 (394)
T PRK11921 33 YNSYLIKD-EKTVLIDTVWQPFAK---EFV-----ENLKK--EIDLDKIDYIVANHGEIDH--SGALPELMKEIPDTPIY 99 (394)
T ss_pred EEEEEEeC-CCEEEEeCCCCCcHH---HHH-----HHHHh--hcCcccCCEEEeCCCCCch--hhHHHHHHHHCCCCEEE
Confidence 47999974 678999995422110 011 11111 1123479999999999999 58999998887889999
Q ss_pred EcCChHHHHhhcC---CceEEeCCCceEEecccCCCceEEEE--ecCCCCCCCCCCCcceEEEEecCCcceEEEcCCCCC
Q 020191 166 ATPNAKTLLDPLF---QNVTYVEPGQSSEIEGRNGSKLRVKA--TAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVY 240 (329)
Q Consensus 166 ~~~~~~~~L~~~~---~~i~~l~~ge~~~~~~~~~~~l~i~~--~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~ 240 (329)
+++.....++... .++..++.+++++++ +.++++ +|+.|+ +.+.++..++ .+++|+||+.
T Consensus 100 ~~~~~~~~l~~~~~~~~~~~~v~~g~~l~lG-----~~~l~~i~tP~~H~-------p~~~~~y~~~--~~vLFsgD~f- 164 (394)
T PRK11921 100 CTKNGAKSLKGHYHQDWNFVVVKTGDRLEIG-----SNELIFIEAPMLHW-------PDSMFTYLTG--DNILFSNDAF- 164 (394)
T ss_pred ECHHHHHHHHHHhCCCCceEEeCCCCEEeeC-----CeEEEEEeCCCCCC-------CCceEEEEcC--CCEEEecCcc-
Confidence 9988776665431 256778999999997 555544 565232 1222222222 3799999973
Q ss_pred chhhhcccCCc------EEEEccCcccCCCc--cccCCHHHHHHHHH--HcCCCEEEEeeccccc
Q 020191 241 NQNFLEKERSD------IIITPVIKQLLPKF--TLVSGQEDAVKLAK--LLHAKFIVPMKNGDLD 295 (329)
Q Consensus 241 ~~~~~~~~~~D------l~~l~~~g~~~~~~--~~h~~~~ea~~~~~--~l~~k~~ip~H~~~f~ 295 (329)
+.++....-+| ..+.+. ..|.-+. .+.....++++.++ .+.++.++|.|...+.
T Consensus 165 G~~~~~~~~~~d~~~~~~~~~~~-~~y~~~i~~p~~~~v~~~l~~l~~~~l~~~~i~p~HG~i~~ 228 (394)
T PRK11921 165 GQHYASELMYNDLVDQGELYQEA-IKYYANILTPFSPLVIKKIEEILSLNLPVDMICPSHGVIWR 228 (394)
T ss_pred cccccCcccccccccchhHHHHH-HHHHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEcCCccEEe
Confidence 32221100000 000000 1111000 00113467777777 4479999999965544
No 22
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.35 E-value=2.3e-11 Score=111.09 Aligned_cols=163 Identities=16% Similarity=0.171 Sum_probs=100.1
Q ss_pred EcCc-EEEEEeC--CcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhhCC
Q 020191 84 LEGN-SWLWDLD--GVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSP 160 (329)
Q Consensus 84 lGhs-s~li~~~--g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p 160 (329)
+..| +|||..+ +..+|||| +.+. . .+ . .+....+ ++++||+||.|+|| .+++..|.++++
T Consensus 9 ~~dNy~Yli~d~~~~~~vlIDp---~~~~-~--il-----~---~l~~~g~-~l~~Il~TH~H~DH--~gG~~~l~~~~~ 71 (258)
T PLN02469 9 LEDNYAYLIIDESTKDAAVVDP---VDPE-K--VL-----Q---AAHEHGA-KIKLVLTTHHHWDH--AGGNEKIKKLVP 71 (258)
T ss_pred ccceEEEEEEeCCCCeEEEECC---CChH-H--HH-----H---HHHHcCC-cccEEEecCCCCcc--ccCHHHHHHHCC
Confidence 4466 8999754 47899999 4222 1 11 1 1111223 78999999999999 599999999877
Q ss_pred CceEEEcCChHHHHhhcCCceEEeCCCceEEecccCCC-ceEEEEecCCCCCCCCCCCcceEEEEecCCcceEEEcCCCC
Q 020191 161 NLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGS-KLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCV 239 (329)
Q Consensus 161 ~~~v~~~~~~~~~L~~~~~~i~~l~~ge~~~~~~~~~~-~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~ 239 (329)
+++||++.... +. + ....+..|+.+.++ +. .+++..+|||..| ..+|++....+...++|+||+.
T Consensus 72 ~~~V~~~~~~~--~~--~-~~~~v~~gd~i~lg---~~~~~~vi~tPGHT~g------hi~~~~~~~~~~~~~lFtGDtL 137 (258)
T PLN02469 72 GIKVYGGSLDN--VK--G-CTHPVENGDKLSLG---KDVNILALHTPCHTKG------HISYYVTGKEGEDPAVFTGDTL 137 (258)
T ss_pred CCEEEEechhc--CC--C-CCeEeCCCCEEEEC---CceEEEEEECCCCCCC------CEEEEeccCCCCCCEEEecCcc
Confidence 89998865321 11 1 12457788899986 11 3677788886432 4677775421113689999997
Q ss_pred CchhhhcccCCcEEEEccCcccCCCccccCCHHHHHHHH----HHc-CCCEEEEeecccccC
Q 020191 240 YNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLA----KLL-HAKFIVPMKNGDLDS 296 (329)
Q Consensus 240 ~~~~~~~~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~~----~~l-~~k~~ip~H~~~f~~ 296 (329)
+.... |... .-++++..+.+ ..| ...+++|.|..+..-
T Consensus 138 f~~g~--------------Gr~~-----~g~~~~~~~Sl~~~l~~Lp~~t~vypGH~yt~~n 180 (258)
T PLN02469 138 FIAGC--------------GKFF-----EGTAEQMYQSLCVTLGSLPKPTQVYCGHEYTVKN 180 (258)
T ss_pred cCCCc--------------CCCC-----CCCHHHHHHHHHHHHHcCCCCeEEEcCCCCchhH
Confidence 64321 2110 01344444433 335 345899999977543
No 23
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.34 E-value=7.1e-12 Score=113.85 Aligned_cols=189 Identities=19% Similarity=0.188 Sum_probs=112.1
Q ss_pred cCcEEEEEe----CCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhhCC
Q 020191 85 EGNSWLWDL----DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSP 160 (329)
Q Consensus 85 Ghss~li~~----~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p 160 (329)
+++||||-. ++..||||| +... ...+ +..+....+ +|.+||+||.|.|| ++++..|+++++
T Consensus 22 ~~~~Yll~d~~~~~~~avlIDP---~~~~--~~~~-------l~~l~~~g~-~i~~Il~TH~H~DH--igg~~~l~~~~~ 86 (251)
T PLN02962 22 STYTYLLADVSHPDKPALLIDP---VDKT--VDRD-------LSLVKELGL-KLIYAMNTHVHADH--VTGTGLLKTKLP 86 (251)
T ss_pred eeEEEEEEeCCCCCCEEEEECC---CCCc--HHHH-------HHHHHHCCC-eeEEEEcCCCCchh--HHHHHHHHHHCC
Confidence 688999864 467899999 3211 0001 011111233 67899999999999 689999988777
Q ss_pred CceEEEcCChHHHHhhcCCceEEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcceEEEEec--CCcceEEEcCCC
Q 020191 161 NLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSS--QGQLTLYYEPHC 238 (329)
Q Consensus 161 ~~~v~~~~~~~~~L~~~~~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~--~~~~~i~~sGDt 238 (329)
++++++..... . ..-..++.++.+.++ +..+++..+|||..| ..+|++... .....++|+||+
T Consensus 87 ~a~v~~~~~~~-----~-~~d~~l~~g~~i~~g---~~~l~vi~tPGHT~g------~v~~~~~d~~~~~~~~~lftGD~ 151 (251)
T PLN02962 87 GVKSIISKASG-----S-KADLFVEPGDKIYFG---DLYLEVRATPGHTAG------CVTYVTGEGPDQPQPRMAFTGDA 151 (251)
T ss_pred CCeEEeccccC-----C-CCCEEeCCCCEEEEC---CEEEEEEECCCCCcC------cEEEEeccCCCCCccceEEECCe
Confidence 88888865321 0 111347788999987 234666778885332 457766431 111369999998
Q ss_pred CCchhhhcccCCcEEEEccCcccCCCccccCCHHHHHH-HHHHcCCC-EEEEeecc----cccCc--cchhhhhcccCCH
Q 020191 239 VYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVK-LAKLLHAK-FIVPMKNG----DLDSK--GFLASIIQSEGTV 310 (329)
Q Consensus 239 ~~~~~~~~~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~-~~~~l~~k-~~ip~H~~----~f~~~--g~~~~~~~~~~~~ 310 (329)
.+.... +..|+ + +| ... ..-++++ .+..+..+ +++|.|.. .-.+. -..+.++ ..+.
T Consensus 152 Lf~~g~---Gr~d~---~-~g----~~~---~l~~Sl~~~l~~L~~~~~i~PGHg~~~~~~tti~~e~~~n~~l--~~~~ 215 (251)
T PLN02962 152 LLIRGC---GRTDF---Q-GG----SSD---QLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEMLYNPRL--TKDE 215 (251)
T ss_pred eccCCc---CCCCC---C-CC----CHH---HHHHHHHHHHHcCCCCeEEECCCCCCCCCCcCHHHHHhhCccc--CCCH
Confidence 765322 23332 1 12 000 1234553 55567665 58999982 11111 1234444 3589
Q ss_pred HHHHHHHHH
Q 020191 311 ESFKCKIYK 319 (329)
Q Consensus 311 ~~f~~~~~~ 319 (329)
++|++.+..
T Consensus 216 ~~fv~~~~~ 224 (251)
T PLN02962 216 ETFKTIMEN 224 (251)
T ss_pred HHHHHHHhh
Confidence 999997754
No 24
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.33 E-value=9.9e-12 Score=113.02 Aligned_cols=157 Identities=18% Similarity=0.258 Sum_probs=95.5
Q ss_pred cEEEEEeCC-cEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhhCCCceEE
Q 020191 87 NSWLWDLDG-VKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVI 165 (329)
Q Consensus 87 ss~li~~~g-~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v~ 165 (329)
.+|+|..++ ..+|||| |... . .. +. +....+ ++++||+||.|.|| .+++..|.++++ +++|
T Consensus 11 ~~yli~~~~~~~ilID~---g~~~-~--i~-----~~---l~~~g~-~l~~Il~TH~H~DH--igG~~~l~~~~~-~~V~ 72 (248)
T TIGR03413 11 YIWLLHDPDGQAAVVDP---GEAE-P--VL-----DA---LEARGL-TLTAILLTHHHHDH--VGGVAELLEAFP-APVY 72 (248)
T ss_pred EEEEEEcCCCCEEEEcC---CChH-H--HH-----HH---HHHcCC-eeeEEEeCCCCccc--cCCHHHHHHHCC-CeEE
Confidence 356776554 8999999 4322 1 11 11 111122 58999999999999 589999988764 8888
Q ss_pred EcCChHHHHhhcCCceEEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcceEEEEecCCcceEEEcCCCCCchhhh
Q 020191 166 ATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFL 245 (329)
Q Consensus 166 ~~~~~~~~L~~~~~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~ 245 (329)
++... ........+..++.+.++ +..+++..+||+..| ..+|++.. .+++|+||+.+....
T Consensus 73 ~~~~~-----~~~~~~~~v~~g~~~~~g---~~~i~v~~tpGHT~g------~i~~~~~~----~~~lftGDtl~~~g~- 133 (248)
T TIGR03413 73 GPAEE-----RIPGITHPVKDGDTVTLG---GLEFEVLAVPGHTLG------HIAYYLPD----SPALFCGDTLFSAGC- 133 (248)
T ss_pred ecccc-----cCCCCcEEeCCCCEEEEC---CEEEEEEECCCCCcc------cEEEEECC----CCEEEEcCccccCCc-
Confidence 87643 111124567889999986 234555566764222 45676653 379999999765321
Q ss_pred cccCCcEEEEccCcccCCCccccCCHHHHHHHHHHcCCCE-EEEeeccccc
Q 020191 246 EKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKF-IVPMKNGDLD 295 (329)
Q Consensus 246 ~~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~~~~l~~k~-~ip~H~~~f~ 295 (329)
|.... .+ ....-++++.++.+.++. ++|.|..+..
T Consensus 134 -------------g~~~~-~~-~~~~~~Sl~~l~~l~~~~~i~pGH~~~~~ 169 (248)
T TIGR03413 134 -------------GRLFE-GT-PEQMYDSLQRLAALPDDTLVYCAHEYTLS 169 (248)
T ss_pred -------------CCCCC-CC-HHHHHHHHHHHHcCCCCeEEECCCCchHH
Confidence 11000 00 002235566667777775 7899986644
No 25
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.32 E-value=2.3e-11 Score=114.18 Aligned_cols=160 Identities=17% Similarity=0.173 Sum_probs=101.6
Q ss_pred EcCc-EEEEEeC--CcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhhCC
Q 020191 84 LEGN-SWLWDLD--GVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSP 160 (329)
Q Consensus 84 lGhs-s~li~~~--g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p 160 (329)
+.+| +|+|... +..++||| +.+. + .+ + .+....+ ++++||+||.|+|| .+++..|.+++
T Consensus 84 l~dNy~Yli~d~~t~~~~vVDP---~~a~-~--vl-----~---~l~~~g~-~L~~ILlTH~H~DH--~GG~~~L~~~~- 145 (329)
T PLN02398 84 LKDNYAYLLHDEDTGTVGVVDP---SEAV-P--VI-----D---ALSRKNR-NLTYILNTHHHYDH--TGGNLELKARY- 145 (329)
T ss_pred eCceEEEEEEECCCCEEEEEcC---CCHH-H--HH-----H---HHHhcCC-CceEEEECCCCchh--hCCHHHHHHhc-
Confidence 4454 9999643 56899999 5332 1 11 1 1222233 68999999999999 59999998876
Q ss_pred CceEEEcCChHHHHhhcCCceEEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcceEEEEecCCcceEEEcCCCCC
Q 020191 161 NLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVY 240 (329)
Q Consensus 161 ~~~v~~~~~~~~~L~~~~~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~ 240 (329)
+++||++......+.. .-..++.|+.+.++ +..+++..+|||..| ..+|.+.. ..++|+||+.+
T Consensus 146 ga~V~g~~~~~~~i~~---~d~~v~dGd~i~lg---g~~l~vi~tPGHT~G------hI~~~~~~----~~vLFtGDtLf 209 (329)
T PLN02398 146 GAKVIGSAVDKDRIPG---IDIVLKDGDKWMFA---GHEVLVMETPGHTRG------HISFYFPG----SGAIFTGDTLF 209 (329)
T ss_pred CCEEEEehHHhhhccC---CcEEeCCCCEEEEC---CeEEEEEeCCCcCCC------CEEEEECC----CCEEEECCCcC
Confidence 6899988765443322 12457788888886 235666778885332 45666542 26899999986
Q ss_pred chhhhcccCCcEEEEccCcccCCCccccCCH---HHHHHHHHHcCCCE-EEEeecccccC
Q 020191 241 NQNFLEKERSDIIITPVIKQLLPKFTLVSGQ---EDAVKLAKLLHAKF-IVPMKNGDLDS 296 (329)
Q Consensus 241 ~~~~~~~~~~Dl~~l~~~g~~~~~~~~h~~~---~ea~~~~~~l~~k~-~ip~H~~~f~~ 296 (329)
.... |.. + .-++ -++++.+..+..+. ++|.|..+...
T Consensus 210 ~~g~--------------Gr~---f--eg~~~~~~~SL~rL~~L~~~t~VypGHgyt~~N 250 (329)
T PLN02398 210 SLSC--------------GKL---F--EGTPEQMLSSLQKIISLPDDTNIYCGHEYTLSN 250 (329)
T ss_pred CCCc--------------CCC---C--CCCHHHHHHHHHHHHcCCCCeEEECCCCChhcc
Confidence 5321 100 0 0123 34555566676664 77999987544
No 26
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.32 E-value=6.5e-12 Score=118.74 Aligned_cols=184 Identities=18% Similarity=0.295 Sum_probs=115.3
Q ss_pred CcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhhCCCceEE
Q 020191 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVI 165 (329)
Q Consensus 86 hss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v~ 165 (329)
-|||||+ +++++||||+ ...+--.++ ..+. ..-++.+||+|+++|.-.|| .++|..|.+..|+++++
T Consensus 36 yNSYLI~-~~k~aLID~~---~~~~~~~~l-----~~l~--~~id~k~iDYIi~~H~ePDh--sg~l~~ll~~~p~a~ii 102 (388)
T COG0426 36 YNSYLIV-GDKTALIDTV---GEKFFDEYL-----ENLS--KYIDPKEIDYIIVNHTEPDH--SGSLPELLELAPNAKII 102 (388)
T ss_pred eeeEEEe-CCcEEEECCC---CcchHHHHH-----HHHH--hhcChhcCeEEEECCCCcch--hhhHHHHHHhCCCCEEE
Confidence 4899999 9999999994 222100011 1111 12233479999999999999 69999999999999999
Q ss_pred EcCChHHHHhhcC---CceEEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcceEEEEecCCcceEEEcCCCCCch
Q 020191 166 ATPNAKTLLDPLF---QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQ 242 (329)
Q Consensus 166 ~~~~~~~~L~~~~---~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~ 242 (329)
++..++..|+..+ ..+..++.|+++.++ +-+++++|+++. +|+ .++...... .+|+||+|.+ +.
T Consensus 103 ~s~~~~~~L~~~~~~~~~~~ivk~Gd~ldlG-----g~tL~Fi~ap~L--HWP---d~m~TYd~~--~kILFS~D~f-G~ 169 (388)
T COG0426 103 CSKLAARFLKGFYHDPEWFKIVKTGDTLDLG-----GHTLKFIPAPFL--HWP---DTMFTYDPE--DKILFSCDAF-GA 169 (388)
T ss_pred eeHHHHHHHHHhcCCccceeecCCCCEeccC-----CcEEEEEeCCCC--CCC---CceeEeecC--CcEEEccccc-cc
Confidence 9999999998773 237888999999997 666677777522 121 233333322 3899999964 22
Q ss_pred hhhccc----CCcEEEEccCcccCCCccc--cCCHHHHHHHHHHcCCCEEEEeecccccC
Q 020191 243 NFLEKE----RSDIIITPVIKQLLPKFTL--VSGQEDAVKLAKLLHAKFIVPMKNGDLDS 296 (329)
Q Consensus 243 ~~~~~~----~~Dl~~l~~~g~~~~~~~~--h~~~~ea~~~~~~l~~k~~ip~H~~~f~~ 296 (329)
++-... .++ .+++-.-.|..+..+ +.....+++.+..++.+.+.|.|...+..
T Consensus 170 h~~~~~~fded~~-~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~~ 228 (388)
T COG0426 170 HVCDDYRFDEDIE-ELLPDMRKYYANLMAPNARLVLWALKKIKLLKIEMIAPSHGPIWRG 228 (388)
T ss_pred cccchhccccCHH-HHHHHHHHHHHHhhcccHHHHHHHHhhhcccCccEEEcCCCceeeC
Confidence 221100 111 011100011100000 11235566666667899999999998775
No 27
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.31 E-value=9.7e-11 Score=112.14 Aligned_cols=191 Identities=19% Similarity=0.247 Sum_probs=123.9
Q ss_pred CceEEEEEc------CcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCC--CCCCEEEEeCCCCCCCC
Q 020191 77 DVFKLTYLE------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDL--PQVDCLLITQSLDDHCH 148 (329)
Q Consensus 77 ~~~~it~lG------hss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~l--p~iD~VlISH~H~DHld 148 (329)
.-++||.|| .||+|+++...+||+||+... ++.| ...+|-+...++ ..+|+|+|||.|.||+
T Consensus 179 ~wvRvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~-a~~~--------~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~- 248 (637)
T COG1782 179 RWVRVTALGGFREVGRSALLVSTPESRVLLDCGVNV-AGNG--------EDAFPYLDVPEFQPDELDAVIITHAHLDHC- 248 (637)
T ss_pred ceEEEEeeccchhccceeEEEecCCceEEEeccccC-CCCc--------cccCcccccccccccccceEEEeecccccc-
Confidence 346888885 799999999999999996642 2201 122332222222 1689999999999996
Q ss_pred hhcHHHhhhhCCCceEEEcCChHHH---Hh--------hcC--------------CceEEeCCCceEEecccCCCceEEE
Q 020191 149 LKTLKPLSKMSPNLKVIATPNAKTL---LD--------PLF--------------QNVTYVEPGQSSEIEGRNGSKLRVK 203 (329)
Q Consensus 149 ~~tl~~l~~~~p~~~v~~~~~~~~~---L~--------~~~--------------~~i~~l~~ge~~~~~~~~~~~l~i~ 203 (329)
+.|..|-+..-+-+||+++.+.+. |+ +.+ ...+.+|.|+..++. .+++++
T Consensus 249 -G~lP~LfkYgy~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIa----PDirLT 323 (637)
T COG1782 249 -GFLPLLFKYGYDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIA----PDIRLT 323 (637)
T ss_pred -cchhhhhhcCCCCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccC----CccEEE
Confidence 778777665336799999987552 21 111 245789999998886 699999
Q ss_pred EecCCCC-CCCCCCCcceEEEEecCCcceEEEcCCCCCchh-hhc-----ccCCcEEEEccCcccCCCccccCCHHHHHH
Q 020191 204 ATAGPVL-GPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQN-FLE-----KERSDIIITPVIKQLLPKFTLVSGQEDAVK 276 (329)
Q Consensus 204 ~~p~~~~-g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~-~~~-----~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~ 276 (329)
+.-|-|. |. ...-+..+++.+.|.|+||--|... +.+ ..+++.++++. .|-..-+.+..-+||-+
T Consensus 324 f~NAGHILGS------A~~HlHIGdGlyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEs--TYGg~~d~q~~R~eaE~ 395 (637)
T COG1782 324 FYNAGHILGS------AMAHLHIGDGLYNIVYTGDFKFEKTRLLEPANNKFPRVETLIMES--TYGGRDDVQPPREEAEK 395 (637)
T ss_pred Eecccchhcc------eeeEEEecCCceeEEEecccccceeeecChhhccCcchhheeeee--ccCCccccCccHHHHHH
Confidence 9877542 21 1222333345579999999877543 222 23788888885 23322234445666655
Q ss_pred HHHHc-------CCCEEEEee
Q 020191 277 LAKLL-------HAKFIVPMK 290 (329)
Q Consensus 277 ~~~~l-------~~k~~ip~H 290 (329)
.+.++ +.|++||+-
T Consensus 396 ~L~~vi~~t~~rGGKvLIP~f 416 (637)
T COG1782 396 ELIKVINDTLKRGGKVLIPVF 416 (637)
T ss_pred HHHHHHHHHHhcCCeEEEEee
Confidence 44332 678999874
No 28
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.31 E-value=5.5e-11 Score=118.23 Aligned_cols=195 Identities=17% Similarity=0.219 Sum_probs=132.3
Q ss_pred CceEEEEE------cCcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCC--CCCCCCCCCEEEEeCCCCCCCC
Q 020191 77 DVFKLTYL------EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSF--QLSDLPQVDCLLITQSLDDHCH 148 (329)
Q Consensus 77 ~~~~it~l------Ghss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~--~~~~lp~iD~VlISH~H~DHld 148 (329)
..++|.-| |.|++.++.++.-+++|.+.. ||-.... +....+|.+ -.+...++++|||||.|.||
T Consensus 7 ~~i~i~~lGG~~EiGkN~~vve~~~~i~i~D~G~~----fp~~~~~-gvDliIPd~~yl~~n~~kvkgI~lTHgHeDH-- 79 (555)
T COG0595 7 AKIKIFALGGVGEIGKNMYVVEYGDDIIILDAGLK----FPEDDLL-GVDLIIPDFSYLEENKDKVKGIFLTHGHEDH-- 79 (555)
T ss_pred CceEEEEecChhhhccceEEEEECCcEEEEECccc----cCccccc-cccEEecChHHhhhccccceEEEecCCchhh--
Confidence 44556555 589999999999999999432 2211110 112234422 22334589999999999999
Q ss_pred hhcHHHhhhhCCCceEEEcCChHHHHhhc---------CCceEEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcc
Q 020191 149 LKTLKPLSKMSPNLKVIATPNAKTLLDPL---------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPEN 219 (329)
Q Consensus 149 ~~tl~~l~~~~p~~~v~~~~~~~~~L~~~---------~~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~ 219 (329)
+++|..|..+...+++|+++.+..+++.. ..++++++.+++++++ +++|++.|..||-+ ...
T Consensus 80 IGaip~ll~~~~~~piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~-----~~~v~f~~vtHSIP----ds~ 150 (555)
T COG0595 80 IGALPYLLKQVLFAPIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFG-----SFEVEFFPVTHSIP----DSL 150 (555)
T ss_pred ccchHHHHhcCCcCceecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEeC-----cEEEEEEeecccCc----cce
Confidence 59999998876559999999988765433 1478999999999997 89999999877643 367
Q ss_pred eEEEEecCCcceEEEcCCCCCch-----------hhhccc--CCcEEEEccCcccCCCccc--cCCHHHHHHHHHHcCCC
Q 020191 220 GYLVNSSQGQLTLYYEPHCVYNQ-----------NFLEKE--RSDIIITPVIKQLLPKFTL--VSGQEDAVKLAKLLHAK 284 (329)
Q Consensus 220 g~~i~~~~~~~~i~~sGDt~~~~-----------~~~~~~--~~Dl~~l~~~g~~~~~~~~--h~~~~ea~~~~~~l~~k 284 (329)
|++|+++.+ .|+|+||--++. .+.+++ ++++++.+.+.+..|.++. +.-.+...++++..+.+
T Consensus 151 g~~i~Tp~G--~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~pg~t~SE~~v~~~l~~i~~~a~gr 228 (555)
T COG0595 151 GIVIKTPEG--NIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAENPGFTPSESEVGENLEDIIRNAKGR 228 (555)
T ss_pred EEEEECCCc--cEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccCCCCCCCCHHHHHHHHHHHHHhCCCc
Confidence 999999763 899999954322 133444 6888888876666565432 11122333444555555
Q ss_pred EEEEe
Q 020191 285 FIVPM 289 (329)
Q Consensus 285 ~~ip~ 289 (329)
+++.+
T Consensus 229 VIv~t 233 (555)
T COG0595 229 VIVTT 233 (555)
T ss_pred EEEEE
Confidence 66544
No 29
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.27 E-value=2e-11 Score=120.86 Aligned_cols=129 Identities=21% Similarity=0.294 Sum_probs=83.2
Q ss_pred CcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhhCCCceEE
Q 020191 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVI 165 (329)
Q Consensus 86 hss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v~ 165 (329)
-|||||+ ++.++||||+ ...+.-.++ ..+. ..-++.+||+|++||.|.|| .+++..|.+++|+++++
T Consensus 35 ~NsYLI~-~~~~vLIDtg---~~~~~~~~l-----~~l~--~~~~~~~Id~IilTH~H~DH--~Ggl~~Ll~~~p~a~V~ 101 (479)
T PRK05452 35 YNSYLIR-EEKNVLIDTV---DHKFSREFV-----QNLR--NEIDLADIDYIVINHAEEDH--AGALTELMAQIPDTPIY 101 (479)
T ss_pred EEEEEEE-CCCEEEEeCC---CcccHHHHH-----HHHH--hcCCHhhCCEEEeCCCCcch--hchHHHHHHHCCCCEEE
Confidence 3899998 5689999994 221100111 1111 01123479999999999999 48999998877889999
Q ss_pred EcCChHHHHhhcC----CceEEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcceEEEEecCCcceEEEcCCC
Q 020191 166 ATPNAKTLLDPLF----QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHC 238 (329)
Q Consensus 166 ~~~~~~~~L~~~~----~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt 238 (329)
+++.+...+.... .++..++.|+++.+++ +..+++..+|+-|+. ....+.+. + .+++|+||.
T Consensus 102 ~s~~~~~~l~~~~~~~~~~~~~v~~G~~l~lG~--~~~l~~i~tP~~H~p-----gs~~~y~~--~--~~vLFsgD~ 167 (479)
T PRK05452 102 CTANAIDSINGHHHHPEWNFNVVKTGDTLDIGN--GKQLIFVETPMLHWP-----DSMMTYLT--G--DAVLFSNDA 167 (479)
T ss_pred ECHHHHHHHHHhhcCCcCeEEEeCCCCEEecCC--CcEEEEEECCCCCCC-----CceEEEEc--C--CCEEEeccc
Confidence 9988877665431 2567889999999961 013556666652321 11223332 2 389999996
No 30
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.22 E-value=5.7e-12 Score=107.56 Aligned_cols=180 Identities=15% Similarity=0.168 Sum_probs=97.0
Q ss_pred EEcCcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhhCCCc
Q 020191 83 YLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNL 162 (329)
Q Consensus 83 ~lGhss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~ 162 (329)
+.+.||++|+.++..|||||....... ... ....... ...+|++||+||.|.|| .+++..+.++.+..
T Consensus 3 ~~~~n~~li~~~~~~iliD~G~~~~~~----~~~---~~~~~~~---~~~~i~~vi~TH~H~DH--~ggl~~~~~~~~~~ 70 (194)
T PF00753_consen 3 EGGSNSYLIEGGDGAILIDTGLDPDFA----KEL---ELALLGI---SGEDIDAVILTHAHPDH--IGGLPELLEAGPVV 70 (194)
T ss_dssp SEEEEEEEEEETTEEEEESEBSSHHHH----HHH---HHHHHHH---TGGGEEEEEESSSSHHH--HTTHHHHHHHTTEE
T ss_pred CeeEEEEEEEECCEEEEEeCCCCchhh----HHh---hhhHhhc---cCCCeEEEEECcccccc--ccccccccccccee
Confidence 467899999999999999994432111 000 0000011 22478999999999999 69999999886433
Q ss_pred eEEEcCChHHHHhhc------------CCceEEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcceEEEEecCCcc
Q 020191 163 KVIATPNAKTLLDPL------------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQL 230 (329)
Q Consensus 163 ~v~~~~~~~~~L~~~------------~~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~ 230 (329)
.+............. ..........+..... ....+...+++.. ...++++..++ .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~--~ 138 (194)
T PF00753_consen 71 IIYSSADAAKAIRPPDRDSASRRGPAVPPPPIIDEDEDDLEIG----GDRILFIIPGPGH------GSDSLIIYLPG--G 138 (194)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHESEEEEEETTTEEEEE----TTEEEEEEESSSS------STTEEEEEETT--T
T ss_pred eeeccccccccccccccccccccccccccccceeeeccccccc----ccccccceecccc------CCcceEEEeCC--C
Confidence 333333222221111 0112222222333332 2455555554311 24567777654 4
Q ss_pred eEEEcCCCCCchhhhcccCCcEEEEccCcccCCCccccCCHHHHHHHHHHcCCCEEEEee
Q 020191 231 TLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMK 290 (329)
Q Consensus 231 ~i~~sGDt~~~~~~~~~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H 290 (329)
+++|+||..+......... + ....+.............++++.++.+++++++|.|
T Consensus 139 ~vlftGD~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~gH 194 (194)
T PF00753_consen 139 KVLFTGDLLFSNEHPNPDP-D---LPLRGADVRYGSNWEESIEALRRLEALDPEVIIPGH 194 (194)
T ss_dssp TEEEEETTSCTTTSSSSST-S---HTTTTHTTSHTTHHHHHHHHHHHHHTSTTSEEEESS
T ss_pred cEEEeeeEeccCCcccccc-c---cccccccccCcHHHHHHHHHHHHHHCCCCCEEEeCc
Confidence 9999999987654322110 0 000010000000011345666777788999999988
No 31
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.22 E-value=9.4e-11 Score=106.78 Aligned_cols=156 Identities=19% Similarity=0.278 Sum_probs=94.0
Q ss_pred EEEEEe-CCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhhCCCceEEE
Q 020191 88 SWLWDL-DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIA 166 (329)
Q Consensus 88 s~li~~-~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v~~ 166 (329)
+|+|.. ++..||||| |.+. + .+ . .+....+ ++++||+||.|+|| .+++..|.++++.++||+
T Consensus 14 ~~li~~~~~~~ilIDp---g~~~-~--vl-----~---~l~~~g~-~l~~IllTH~H~DH--igG~~~l~~~~~~~~V~~ 76 (251)
T PRK10241 14 IWVLNDEAGRCLIVDP---GEAE-P--VL-----N---AIAENNW-QPEAIFLTHHHHDH--VGGVKELVEKFPQIVVYG 76 (251)
T ss_pred EEEEEcCCCcEEEECC---CChH-H--HH-----H---HHHHcCC-ccCEEEeCCCCchh--hccHHHHHHHCCCCEEEe
Confidence 466644 568999999 4322 1 11 1 1111122 57899999999999 589999999887788988
Q ss_pred cCChHHHHhhcCCceEEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcceEEEEecCCcceEEEcCCCCCchhhhc
Q 020191 167 TPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLE 246 (329)
Q Consensus 167 ~~~~~~~L~~~~~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~ 246 (329)
+..... ......+..|+.+.++ +..+++..+||+..| ..+|+. . .++|+||+.+......
T Consensus 77 ~~~~~~-----~~~~~~v~~g~~i~ig---~~~~~vi~tPGHT~g------hi~~~~---~---~~lFtGDtlf~~g~gr 136 (251)
T PRK10241 77 PQETQD-----KGTTQVVKDGETAFVL---GHEFSVFATPGHTLG------HICYFS---K---PYLFCGDTLFSGGCGR 136 (251)
T ss_pred cccccc-----cCCceEeCCCCEEEeC---CcEEEEEEcCCCCcc------ceeeec---C---CcEEEcCeeccCCcCC
Confidence 654211 1123456788888886 235667778885332 344532 1 4799999876532210
Q ss_pred ccCCcEEEEccCcccCCCccccCCHHHHHHHHHHcCCCE-EEEeecccccC
Q 020191 247 KERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKF-IVPMKNGDLDS 296 (329)
Q Consensus 247 ~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~~~~l~~k~-~ip~H~~~f~~ 296 (329)
+ . .| .. ...-++++.+..+.++. ++|.|..+...
T Consensus 137 ---~----f--~g----~~---~~~~~Sl~kl~~l~~~t~i~pgH~y~~~n 171 (251)
T PRK10241 137 ---L----F--EG----TA---SQMYQSLKKINALPDDTLICCAHEYTLSN 171 (251)
T ss_pred ---C----C--CC----CH---HHHHHHHHHHHcCCCCEEEECCCCChhhh
Confidence 0 0 01 00 02345566666677776 55789877544
No 32
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=8.5e-10 Score=107.72 Aligned_cols=176 Identities=19% Similarity=0.206 Sum_probs=114.0
Q ss_pred EcCcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhhCCCce
Q 020191 84 LEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLK 163 (329)
Q Consensus 84 lGhss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~~ 163 (329)
.|.+|.+|+.++.+||+||++.. .. . . ..+| +.. ..|++|+|+|||.|.|| .+.+..+....-+.+
T Consensus 12 vg~s~~~l~~~~~~il~D~G~~~-~~-~------~--~~~p-~~~-~~~~vDavllTHaHlDH--~g~lp~l~~~~~~~~ 77 (427)
T COG1236 12 VGRSCVLLETGGTRILLDCGLFP-GD-P------S--PERP-LLP-PFPKVDAVLLTHAHLDH--IGALPYLVRNGFEGP 77 (427)
T ss_pred cCcEEEEEEECCceEEEECCCCc-Cc-C------C--ccCC-CCC-CCCCcCEEEeccCchhh--hcccHHHHHhccCCc
Confidence 36899999999999999994432 11 0 0 1122 221 23379999999999999 588888766322468
Q ss_pred EEEcCChHHHHhhc------------------------CCceEEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcc
Q 020191 164 VIATPNAKTLLDPL------------------------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPEN 219 (329)
Q Consensus 164 v~~~~~~~~~L~~~------------------------~~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~ 219 (329)
+|+++.+...++-. ..+++.++.+++++++ +++|++.|+-|.- ..+
T Consensus 78 v~aT~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~-----~~~v~~~~AGHil-----Gsa 147 (427)
T COG1236 78 VYATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVG-----GVKVTFYNAGHIL-----GSA 147 (427)
T ss_pred eeeccCHHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEee-----eEEEEEecCCCcc-----cee
Confidence 99998875532210 1356779999999998 7999999996531 246
Q ss_pred eEEEEecCCcceEEEcCCCCCchh--hh--ccc-CCcEEEEccCcccCCCccccCCHHHHHHH----HH---HcCCCEEE
Q 020191 220 GYLVNSSQGQLTLYYEPHCVYNQN--FL--EKE-RSDIIITPVIKQLLPKFTLVSGQEDAVKL----AK---LLHAKFIV 287 (329)
Q Consensus 220 g~~i~~~~~~~~i~~sGDt~~~~~--~~--~~~-~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~----~~---~l~~k~~i 287 (329)
+|.++.++ .+|+|+||...... .. +.. .+|+++++. .|.- ..|.+.++..+. ++ .-+...++
T Consensus 148 ~~~le~~~--~~ilytGD~~~~~~~l~~~a~~~~~~DvLI~Es--TYg~--~~~~~r~~~e~~f~~~v~~~l~~GG~vli 221 (427)
T COG1236 148 AILLEVDG--GRILYTGDVKRRKDRLLNGAELPPCIDVLIVES--TYGD--RLHPNRDEVERRFIESVKAALERGGTVLI 221 (427)
T ss_pred EEEEEeCC--ceEEEEeccCCCcCCCCCccccCCCCcEEEEec--ccCC--ccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 88888755 48999999765332 11 122 369999985 3422 334444333322 22 22446777
Q ss_pred Ee
Q 020191 288 PM 289 (329)
Q Consensus 288 p~ 289 (329)
|.
T Consensus 222 pa 223 (427)
T COG1236 222 PA 223 (427)
T ss_pred ec
Confidence 75
No 33
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=99.20 E-value=1.2e-10 Score=104.93 Aligned_cols=156 Identities=12% Similarity=0.141 Sum_probs=93.5
Q ss_pred CCCCCCEEEEeCCCCCCCChhcHHHhhhhCC-CceEEEcCChHHHHhhcCCceEEeCCCceEEecccCCCceEEE--Eec
Q 020191 130 DLPQVDCLLITQSLDDHCHLKTLKPLSKMSP-NLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVK--ATA 206 (329)
Q Consensus 130 ~lp~iD~VlISH~H~DHld~~tl~~l~~~~p-~~~v~~~~~~~~~L~~~~~~i~~l~~ge~~~~~~~~~~~l~i~--~~p 206 (329)
....+++||.||.|+|| .+++..|.+..+ ++++|..+. +.+..+ -..++.+|.+.++ +++|+ .+|
T Consensus 48 ~~~~l~~Il~THhH~DH--sGGn~~i~~~~~~~~~v~g~~~--~r~~~i---~~~~~~~e~~~~~-----g~~v~~l~TP 115 (265)
T KOG0813|consen 48 ENRRLTAILTTHHHYDH--SGGNEDIKREIPYDIKVIGGAD--DRIPGI---TRGLKDGETVTVG-----GLEVRCLHTP 115 (265)
T ss_pred ccCceeEEEeccccccc--cCcHHHHHhhccCCcEEecCCh--hcCccc---cccCCCCcEEEEC-----CEEEEEEeCC
Confidence 34589999999999999 589999998754 777877641 112221 1237888999997 55555 556
Q ss_pred CCCCCCCCCCCcceEEEEecCCcceEEEcCCCCCchhhhcccCCcEEEEccCcccCCCccccCCHHHHHHHHHHcCCC-E
Q 020191 207 GPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAK-F 285 (329)
Q Consensus 207 ~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~~~~l~~k-~ 285 (329)
++.. ...+|.+.. ..+.+.+|+||+.+... +|.+... +++....+++.+..|..+ .
T Consensus 116 gHT~------~hi~~~~~~-~~~e~~iFtGDtlf~~G--------------cG~~FEg--t~~~M~~sl~~l~~L~~~t~ 172 (265)
T KOG0813|consen 116 GHTA------GHICYYVTE-STGERAIFTGDTLFGAG--------------CGRFFEG--TAEQMDSSLNELIALPDDTR 172 (265)
T ss_pred CccC------CcEEEEeec-CCCCCeEEeCCceeecC--------------ccchhcC--CHHHHHHhHHHhhcCCCCce
Confidence 6432 256777774 22347899999876532 1322221 122334455546677777 8
Q ss_pred EEEeecccccCccchhhhhcccCCHHHHHHHHHHh
Q 020191 286 IVPMKNGDLDSKGFLASIIQSEGTVESFKCKIYKC 320 (329)
Q Consensus 286 ~ip~H~~~f~~~g~~~~~~~~~~~~~~f~~~~~~~ 320 (329)
++|.|--+-....+.....-.+...++..+.+.+.
T Consensus 173 iypGHeYt~~n~kf~~~ve~~n~~~q~~l~~~~~~ 207 (265)
T KOG0813|consen 173 IYPGHEYTKSNLKFARYVEPRNEVEQEKLDWLVER 207 (265)
T ss_pred EccCcccccccceeeeecccccHHHHHHHHHHHHH
Confidence 99999855554444332211123344444444444
No 34
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.11 E-value=3.4e-09 Score=94.62 Aligned_cols=184 Identities=18% Similarity=0.141 Sum_probs=99.7
Q ss_pred EEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhh-CCCceEEE
Q 020191 88 SWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM-SPNLKVIA 166 (329)
Q Consensus 88 s~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~-~p~~~v~~ 166 (329)
|+||+.++.+||+|+ |..+ ..++.+ ...+.+ ++.+||+|+|||.|||| .++|..+.+. .+++++|+
T Consensus 24 S~LVE~~~~riLFDt---G~~~--~~ll~N-----a~~lgv-d~~did~vvlSHgH~DH--~GGL~~~~~~~~~~i~v~a 90 (259)
T COG1237 24 SALVEDEGTRILFDT---GTDS--DVLLHN-----ARLLGV-DLRDIDAVVLSHGHYDH--TGGLPYLLEENNPGIPVYA 90 (259)
T ss_pred EEEEEcCCeEEEEeC---CCCc--HHHHHH-----HHHcCC-CcccCcEEEEeCCCccc--cCchHhHHhccCCCceEEe
Confidence 789999999999999 5222 123321 112333 23478999999999999 5999988664 47899999
Q ss_pred cCChHHHHhhc----C-C------ceEEeCCCceEEecccCCCceEEE-Eec-------CCC-CCC-CCCCCcceEEEEe
Q 020191 167 TPNAKTLLDPL----F-Q------NVTYVEPGQSSEIEGRNGSKLRVK-ATA-------GPV-LGP-PWQRPENGYLVNS 225 (329)
Q Consensus 167 ~~~~~~~L~~~----~-~------~i~~l~~ge~~~~~~~~~~~l~i~-~~p-------~~~-~g~-~~~~~~~g~~i~~ 225 (329)
+|...+..... + . +++..+..+ .+. .++-.. ..| +-+ -|+ +......+.++++
T Consensus 91 hp~af~~~~~~~~~~gi~e~~~~~~~~~~~~~~--~I~----~g~~~~Gei~~~~~e~~~~~~dg~~D~~~de~aLi~~~ 164 (259)
T COG1237 91 HPDAFKAKIEVFREIGIPELEELARLILSEEPD--EIV----EGVITLGEIPKVTFEKGGYFEDGEPDPVLDEQALIVET 164 (259)
T ss_pred ChHHHhhhccccccccchhhhhccceeecCCCc--eee----cCeEEecccCccccccccccccCCCCCcCCceEEEEec
Confidence 99875511110 1 1 111111111 111 111110 011 001 011 0011246777887
Q ss_pred cCCcceEEEcCCCCCchh-----hhcccCCcEEEEccCcccCCCccccCCHHHHHHHHHHcCCCEEEEeecccc
Q 020191 226 SQGQLTLYYEPHCVYNQN-----FLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDL 294 (329)
Q Consensus 226 ~~~~~~i~~sGDt~~~~~-----~~~~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f 294 (329)
.. | -+..+|-+..+-. -++... |=+..=++|-...... -.-.++.++.++++.++.++|+|..-+
T Consensus 165 ~~-G-lvvItGCsH~GI~niv~~~~~~~g-~rv~~ViGGFHL~~~~-~~~l~~~~~~l~el~v~~i~pcHCTg~ 234 (259)
T COG1237 165 EK-G-LVVITGCSHPGIVNIVEWAKERSG-DRVKAVIGGFHLIGAS-EERLEEVADYLKELGVEKIYPCHCTGE 234 (259)
T ss_pred CC-c-eEEEEcCCcccHHHHHHHHHHhcc-ceeEEEeeeeccCCCc-HHHHHHHHHHHHhcCCCeEEecCCCCH
Confidence 53 2 7888887644321 122233 3333333331111000 012357888999999999999999753
No 35
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.08 E-value=8.6e-09 Score=106.23 Aligned_cols=185 Identities=10% Similarity=0.107 Sum_probs=115.1
Q ss_pred CceEEEEE--cC-cEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHH
Q 020191 77 DVFKLTYL--EG-NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLK 153 (329)
Q Consensus 77 ~~~~it~l--Gh-ss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~ 153 (329)
++.+|+++ |+ .|++|+.+++++|||+ |... +.... +.+...|-+....+. +|+|+|||.|.|| .+++.
T Consensus 438 ~~~~v~~lDVGqGdaili~~~~~~iLIDt---G~~~-~~~~~--~~~~l~p~L~~~Gi~-ID~lilTH~d~DH--iGGl~ 508 (662)
T TIGR00361 438 SSWQVDMLDVGQGLAMFIGANGKGILYDT---GEPW-REGSL--GEKVIIPFLTAKGIK-LEALILSHADQDH--IGGAE 508 (662)
T ss_pred CCEEEEEEecCCceEEEEEECCeEEEEeC---CCCC-CCCCc--cHHHHHHHHHHcCCC-cCEEEECCCchhh--hCcHH
Confidence 35788887 43 6888999999999999 5321 10000 111122333344554 9999999999999 69999
Q ss_pred HhhhhCCCceEEEcCChHHHHhhcCCceEEeCCCceEEecccCCCceEEEEe-cCCCCCCCCCCCcceEEEEecCCcceE
Q 020191 154 PLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKAT-AGPVLGPPWQRPENGYLVNSSQGQLTL 232 (329)
Q Consensus 154 ~l~~~~p~~~v~~~~~~~~~L~~~~~~i~~l~~ge~~~~~~~~~~~l~i~~~-p~~~~g~~~~~~~~g~~i~~~~~~~~i 232 (329)
.+.++++..+++.+ .+.. .....+.++..|+.++++ +++++++ |...... ..|..|.++....++.++
T Consensus 509 ~ll~~~~v~~i~~~-~~~~---~~~~~~~~~~~G~~~~~~-----~~~~~vL~P~~~~~~--~~N~~S~vl~i~~~~~~~ 577 (662)
T TIGR00361 509 IILKHHPVKRLVIP-KGFV---EEGVAIEECKRGDVWQWQ-----GLQFHVLSPEAPDPA--SKNNHSCVLWVDDGGNSW 577 (662)
T ss_pred HHHHhCCccEEEec-cchh---hCCCceEecCCCCEEeEC-----CEEEEEECCCCccCC--CCCCCceEEEEEECCeeE
Confidence 99887754455543 3321 112345667888888886 7888776 3321111 234445554433345799
Q ss_pred EEcCCCCCchh--hhcc---cCCcEEEEccCcccCCCccccCCHHHHHHHHHHcCCCEEEEee
Q 020191 233 YYEPHCVYNQN--FLEK---ERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMK 290 (329)
Q Consensus 233 ~~sGDt~~~~~--~~~~---~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H 290 (329)
+++||.....+ +.+. .+.|++.++..|.... + +-+.++.++|+..+-.-
T Consensus 578 L~tGD~~~~~E~~l~~~~~~l~~dvLk~~HHGS~~S------s---s~~fl~~v~P~~aiiS~ 631 (662)
T TIGR00361 578 LLTGDLEAEGEQEVMRVFPNIKADVLQVGHHGSKTS------T---SEELIQQVQPKVAIISA 631 (662)
T ss_pred EEecCCCHHHHHHHHhcccCcCccEEEeCCCCCCCC------C---hHHHHHhcCCCEEEEEC
Confidence 99999876433 2221 3788999987663221 2 23677888999877643
No 36
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.07 E-value=3.9e-09 Score=93.32 Aligned_cols=149 Identities=19% Similarity=0.262 Sum_probs=89.9
Q ss_pred EEEEEeCCcEEEEcCccCCCCCCCCCccccCCcc-ccCCC--C-----------CCCCCCCCEEEEeCCCCCCCCh----
Q 020191 88 SWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKK-FLKSF--Q-----------LSDLPQVDCLLITQSLDDHCHL---- 149 (329)
Q Consensus 88 s~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~-~~~~~--~-----------~~~lp~iD~VlISH~H~DHld~---- 149 (329)
+.+|++.+..|||||.-| - +|+| .+|+- . .+-..+.|+|.|||.||||.+.
T Consensus 17 At~vet~dv~ILiDpGVs---L--------aPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~ 85 (304)
T COG2248 17 ATFVETKDVGILIDPGVS---L--------APKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDG 85 (304)
T ss_pred hheeecCCeeEEECCccc---c--------CccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccc
Confidence 568999999999999333 1 1111 11210 0 0113478999999999999874
Q ss_pred ---h---cHHHhhhhCCCceEEEcCCh----------HHHHhhcC--CceEEeCCCceEEecccCCCceEEEEecCCCCC
Q 020191 150 ---K---TLKPLSKMSPNLKVIATPNA----------KTLLDPLF--QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLG 211 (329)
Q Consensus 150 ---~---tl~~l~~~~p~~~v~~~~~~----------~~~L~~~~--~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g 211 (329)
+ +-++|-+- +.-++-+|.. ..+|++.+ .+-++..++++++++ +.+|.+.|.-.+|
T Consensus 86 ~y~~s~e~~~eiY~g--K~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG-----~t~IefS~pvpHG 158 (304)
T COG2248 86 IYEASGETAKEIYKG--KLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFG-----GTVIEFSPPVPHG 158 (304)
T ss_pred hhhhcccchHHHhcC--cEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeC-----CEEEEecCCCCCC
Confidence 2 33333321 2333334421 11344332 345667788899997 8999998887677
Q ss_pred CCCCCCcceEEEEe--cCCcceEEEcCCCC---Cchh--hhcccCCcEEEEc
Q 020191 212 PPWQRPENGYLVNS--SQGQLTLYYEPHCV---YNQN--FLEKERSDIIITP 256 (329)
Q Consensus 212 ~~~~~~~~g~~i~~--~~~~~~i~~sGDt~---~~~~--~~~~~~~Dl~~l~ 256 (329)
+. +...|||+.. .+++.+|.|+.|+- .+.. |.....+|++++.
T Consensus 159 ~e--GskLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~ 208 (304)
T COG2248 159 RE--GSKLGYVLMVAVTDGKSSIVFASDVQGPINDEALEFILEKRPDVLIIG 208 (304)
T ss_pred Cc--ccccceEEEEEEecCCeEEEEcccccCCCccHHHHHHHhcCCCEEEec
Confidence 63 2345777542 22347999999973 2222 3333499999985
No 37
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.05 E-value=8e-09 Score=94.65 Aligned_cols=182 Identities=18% Similarity=0.307 Sum_probs=112.3
Q ss_pred EcCcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCC----CCCC-CCCCEEEEeCCCCCCCChhcHHHhhhh
Q 020191 84 LEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQ----LSDL-PQVDCLLITQSLDDHCHLKTLKPLSKM 158 (329)
Q Consensus 84 lGhss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~----~~~l-p~iD~VlISH~H~DHld~~tl~~l~~~ 158 (329)
+|.||+|+.++|++|++|+...- |. ...+++|.++ -..+ .-||.|+|||.|.||+ +.|..+.+-
T Consensus 15 vGrSCilvsi~Gk~iM~DCGMHM----G~-----nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHc--GaLPyfsEv 83 (501)
T KOG1136|consen 15 VGRSCILVSIGGKNIMFDCGMHM----GF-----NDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHC--GALPYFSEV 83 (501)
T ss_pred cCceEEEEEECCcEEEEeccccc----cc-----CccccCCCceeecCCCCcccceeEEEEeeeccccc--ccccchHhh
Confidence 47899999999999999994321 11 1246666432 1222 2689999999999997 777766553
Q ss_pred C-CCceEEEcCChHH----HHhh--------cC--------------CceEEeCCCceEEecccCCCceEEEEecCCC-C
Q 020191 159 S-PNLKVIATPNAKT----LLDP--------LF--------------QNVTYVEPGQSSEIEGRNGSKLRVKATAGPV-L 210 (329)
Q Consensus 159 ~-p~~~v~~~~~~~~----~L~~--------~~--------------~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~-~ 210 (329)
. -+-++|.+-.... .|+. .| .+|+.++-.|++.++ +++.|++.=+.| .
T Consensus 84 ~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD----~dl~IrayYAGHVL 159 (501)
T KOG1136|consen 84 VGYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVD----EDLQIRAYYAGHVL 159 (501)
T ss_pred hCCCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEec----ccceeeeeeccccc
Confidence 1 1457776644322 2221 11 368888889999997 699998876532 2
Q ss_pred CCCCCCCcceEEEEecCCcceEEEcCCCCCchh------hhcccCCcEEEEccCcccCCCc--cccCCHHHHHHHHH---
Q 020191 211 GPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQN------FLEKERSDIIITPVIKQLLPKF--TLVSGQEDAVKLAK--- 279 (329)
Q Consensus 211 g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~------~~~~~~~Dl~~l~~~g~~~~~~--~~h~~~~ea~~~~~--- 279 (329)
| ..-|.+..++ .+|+|+||-...++ ..+..++|+++.+. .|.... .--..-.+-++++.
T Consensus 160 G------AaMf~ikvGd--~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsES--TYattiRdskr~rERdFLk~VhecV 229 (501)
T KOG1136|consen 160 G------AAMFYIKVGD--QSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISES--TYATTIRDSKRCRERDFLKKVHECV 229 (501)
T ss_pred c------eeEEEEEecc--eeEEEecCccCCcccccchhhhccccCceEEeec--cceeeeccccchhHHHHHHHHHHHH
Confidence 2 2455566644 59999999654432 22335899999875 232100 00011233344433
Q ss_pred HcCCCEEEEee
Q 020191 280 LLHAKFIVPMK 290 (329)
Q Consensus 280 ~l~~k~~ip~H 290 (329)
.-+.|++||+-
T Consensus 230 a~GGkvlIPvF 240 (501)
T KOG1136|consen 230 ARGGKVLIPVF 240 (501)
T ss_pred hcCCeEEEEee
Confidence 34778999873
No 38
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.02 E-value=7.3e-09 Score=94.51 Aligned_cols=204 Identities=12% Similarity=0.000 Sum_probs=117.7
Q ss_pred CcEEEEEeCCcEEEEc-CccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhh-------
Q 020191 86 GNSWLWDLDGVKVLVD-PILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSK------- 157 (329)
Q Consensus 86 hss~li~~~g~~ILiD-P~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~------- 157 (329)
.+||++ ....+||+| . |.+. +-. -...+..++.|||||.|.||+ +++-.+.-
T Consensus 10 ~~t~~~-~~~~~ilfD~a---g~g~---~~~-----------l~~k~~~l~~vFlTH~H~DHi--~gL~~~~~~~~~~~~ 69 (277)
T TIGR02650 10 FFSTII-YSPEEIIFDAA---EEGS---STL-----------GGKKVAAFKVFFLHGGHDDHA--AGLGGVNIINNGGGD 69 (277)
T ss_pred heEEEE-ECchhheehhh---cccc---hhH-----------HhhhHhhcCEEEeecCchhhh--cchHHHHhhhhhccc
Confidence 344444 356689999 6 4322 111 112345789999999999995 66622211
Q ss_pred hCCCceEEEcCChHHHHh-------hcC------CceEEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcceEEEE
Q 020191 158 MSPNLKVIATPNAKTLLD-------PLF------QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVN 224 (329)
Q Consensus 158 ~~p~~~v~~~~~~~~~L~-------~~~------~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~ 224 (329)
+.+...||+++..++.++ ++. .++..+..++.+.+. .+|..+.|.+.+..|.-. .....||+|.
T Consensus 70 ~~~p~~Vy~P~g~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r-~~~~~~~V~~f~t~H~v~--~~~s~GY~~~ 146 (277)
T TIGR02650 70 DEEKLDDFFPKEGNAAEEETSEFIKAANEDLFFFFNHHLEEEDERFFLD-AAGFFKRVQPFFRKHHAS--EESFFGHHFE 146 (277)
T ss_pred CCCCCeEECCcchhHHHHHHHHHHHHhhhhhccCcccCCCCCCcEEEee-cCCccEEEecCccccccC--ccCccCeEEE
Confidence 112356777666554444 221 123233444444443 001246777777654310 0013455543
Q ss_pred e------------------------------cCCcceEEEcCCCCCchhhhcccCCcEEEEccCccc--CCCccccCCHH
Q 020191 225 S------------------------------SQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQL--LPKFTLVSGQE 272 (329)
Q Consensus 225 ~------------------------------~~~~~~i~~sGDt~~~~~~~~~~~~Dl~~l~~~g~~--~~~~~~h~~~~ 272 (329)
. +....+|.|+|||.+... ....+.|+++.++.-.- ...-..|++.+
T Consensus 147 ~~r~KLK~E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvysGDT~~~~~-~~a~~adlLIhEaTf~d~~~~~~~gH~t~~ 225 (277)
T TIGR02650 147 ERRKKKEEEFGGDDKKEARLLKEEGGDDFTREEHHKILLIIGDDLAADD-EEEEGGEELIHECCFFDDADDRRKKHAAAD 225 (277)
T ss_pred EEeecchHhHcCCCHHHHHHHHHhCCccccccccCcEEEEeCCCCCCCh-HHhcCCCEEEEecccccccccccCCCCCHH
Confidence 1 112358999999988753 33359999999973110 00112499999
Q ss_pred HHHHHHHHcCCCEEEEeecccccCccchhhhhcccCCHHHHHHHHHHhcCC
Q 020191 273 DAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKCKIYKCYDR 323 (329)
Q Consensus 273 ea~~~~~~l~~k~~ip~H~~~f~~~g~~~~~~~~~~~~~~f~~~~~~~~~~ 323 (329)
|+++.+++.+++.++.+|+..-.. ....+++++.+.+.++.
T Consensus 226 eaa~~A~~a~vk~LiLtH~Ssry~----------~~~~~~~~~~~~~~~~~ 266 (277)
T TIGR02650 226 DEMEESKKAAGKKKIILHHISRRI----------IRILKSIIKKREEEMDD 266 (277)
T ss_pred HHHHHHHHcCCCEEEEEeeccccc----------HHHHHHHHHHHHhhcCc
Confidence 999999999999999999975322 12235566666666554
No 39
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.00 E-value=2.2e-08 Score=92.57 Aligned_cols=161 Identities=14% Similarity=0.142 Sum_probs=100.5
Q ss_pred eEEEEE--c-CcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHh
Q 020191 79 FKLTYL--E-GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPL 155 (329)
Q Consensus 79 ~~it~l--G-hss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l 155 (329)
.++..+ | ..+++++.++.++|+|+ +... +.+..+|-+.-..+.+||.+++||.|.|| ++++..+
T Consensus 44 ~~~~~lDvGqg~a~li~~~~~~~l~dt---g~~~--------~~~~iip~Lk~~GV~~iD~lIlTH~d~DH--iGg~~~v 110 (293)
T COG2333 44 WKVHMLDVGQGLATLIRSEGKTILYDT---GNSM--------GQDVIIPYLKSLGVRKLDQLILTHPDADH--IGGLDEV 110 (293)
T ss_pred ceEEEEEcCCCeEEEEeeCCceEEeec---Cccc--------CceeehhhHhHcCCccccEEEeccCCccc--cCCHHHH
Confidence 456665 4 45889999999999999 5311 11233454555667789999999999999 6999999
Q ss_pred hhhCCCceEEEcCC--hHH--HHhhcCCceEEeCCCceEEecccCCCceEEEEe-cCCCCCCCCCCCcceEEEEecCCcc
Q 020191 156 SKMSPNLKVIATPN--AKT--LLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKAT-AGPVLGPPWQRPENGYLVNSSQGQL 230 (329)
Q Consensus 156 ~~~~p~~~v~~~~~--~~~--~L~~~~~~i~~l~~ge~~~~~~~~~~~l~i~~~-p~~~~g~~~~~~~~g~~i~~~~~~~ 230 (329)
.+.++--.+++... ... .+++.+..+....-|+...++ ++.++++ |....++ ..|..|.++....++.
T Consensus 111 l~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-----~~~f~vl~P~~~~~~--~~N~~S~Vl~v~~g~~ 183 (293)
T COG2333 111 LKTIKVPELWIYAGSDSTSTFVLRDAGIPVRSCKAGDSWQWG-----GVVFQVLSPVGGVSD--DLNNDSCVLRVTFGGN 183 (293)
T ss_pred HhhCCCCcEEEeCCCCccchhhhhhcCCceeccccCceEEEC-----CeEEEEEcCCccccc--cccCcceEEEEEeCCe
Confidence 88432123333222 111 234445677888889999997 7887665 3322222 2344455554433457
Q ss_pred eEEEcCCCCCchh--hhccc---CCcEEEEccCc
Q 020191 231 TLYYEPHCVYNQN--FLEKE---RSDIIITPVIK 259 (329)
Q Consensus 231 ~i~~sGDt~~~~~--~~~~~---~~Dl~~l~~~g 259 (329)
+++++||..-..+ +.+.+ ..|++.++..|
T Consensus 184 s~LlTGD~e~~~E~~l~~~~~~l~~dVLkV~HHG 217 (293)
T COG2333 184 SFLLTGDLEEKGEKLLKKYGPDLRADVLKVGHHG 217 (293)
T ss_pred eEEEecCCCchhHHHHHhhCCCccceEEEeccCC
Confidence 9999999764433 22222 45666666544
No 40
>PRK11539 ComEC family competence protein; Provisional
Probab=98.99 E-value=9.6e-09 Score=107.26 Aligned_cols=160 Identities=13% Similarity=0.108 Sum_probs=98.5
Q ss_pred CCceEEEEE--cC-cEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcH
Q 020191 76 TDVFKLTYL--EG-NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTL 152 (329)
Q Consensus 76 ~~~~~it~l--Gh-ss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl 152 (329)
+++.+|+.+ || .+++|+.+|+++|+|+ |... +.... +.+...|-+....+ ++|+|+|||.|.|| .+++
T Consensus 498 ~~~~~v~~lDVGqG~a~li~~~~~~lLiDt---G~~~-~~~~~--~~~~i~P~L~~~Gi-~lD~lilSH~d~DH--~GGl 568 (755)
T PRK11539 498 EYEWRVDMLDVGHGLAVVIERNGKAILYDT---GNAW-PTGDS--AQQVIIPWLRWHGL-TPEGIILSHEHLDH--RGGL 568 (755)
T ss_pred CCcEEEEEEEccCceEEEEEECCEEEEEeC---CCCC-CCCcc--hHHHHHHHHHHcCC-CcCEEEeCCCCccc--CCCH
Confidence 456788887 54 6778999999999999 5321 10000 11112233444556 69999999999999 5899
Q ss_pred HHhhhhCCCceEEEcCChHHHHhhcCCceEEeCCCceEEecccCCCceEEEEe-cCCCCCCCCCCCcceEEEEecCCcce
Q 020191 153 KPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKAT-AGPVLGPPWQRPENGYLVNSSQGQLT 231 (329)
Q Consensus 153 ~~l~~~~p~~~v~~~~~~~~~L~~~~~~i~~l~~ge~~~~~~~~~~~l~i~~~-p~~~~g~~~~~~~~g~~i~~~~~~~~ 231 (329)
..+.+++|..+++.+.... +......|+..+.+ +++++++ |..+..+ ..|..|.++....++.+
T Consensus 569 ~~Ll~~~~~~~i~~~~~~~--------~~~~~~~g~~~~~~-----~~~~~vL~P~~~~~~--~~N~~S~Vl~i~~~~~~ 633 (755)
T PRK11539 569 ASLLHAWPMAWIRSPLNWA--------NHLPCVRGEQWQWQ-----GLTFSVHWPLEQSND--AGNNDSCVIRVDDGKHS 633 (755)
T ss_pred HHHHHhCCcceeeccCccc--------CcccccCCCeEeEC-----CEEEEEEecCcccCC--CCCCccEEEEEEECCEE
Confidence 9999887666666542111 12234567777776 7777666 3222211 22444555544334579
Q ss_pred EEEcCCCCCchh--hhc----ccCCcEEEEccCc
Q 020191 232 LYYEPHCVYNQN--FLE----KERSDIIITPVIK 259 (329)
Q Consensus 232 i~~sGDt~~~~~--~~~----~~~~Dl~~l~~~g 259 (329)
++++||.....+ +.+ ..+.|++.+|..|
T Consensus 634 ~LltGDi~~~~E~~Ll~~~~~~l~~dvL~vpHHG 667 (755)
T PRK11539 634 ILLTGDLEAQAEQKLLSRYWQQLAATLLQVPHHG 667 (755)
T ss_pred EEEEeCCChHHHHHHHhcCccCcCCCEEEeCCCC
Confidence 999999865433 222 1267888887655
No 41
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=98.95 E-value=4.2e-09 Score=101.83 Aligned_cols=159 Identities=18% Similarity=0.216 Sum_probs=105.2
Q ss_pred CCceEEEEE------cCcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCCh
Q 020191 76 TDVFKLTYL------EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHL 149 (329)
Q Consensus 76 ~~~~~it~l------Ghss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~ 149 (329)
.+.+.++-| |.||.++|..|++|+.||.... +.+.+ ..+|-++.-+++.||.++|||.|.||+
T Consensus 11 ~d~l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhp----aysg~-----aslpf~d~vd~s~id~llIthFhldh~-- 79 (668)
T KOG1137|consen 11 SDQLKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHP----AYSGM-----ASLPFYDEVDLSAIDPLLITHFHLDHA-- 79 (668)
T ss_pred CCcEEEEECCCCcccCceEEEEEecCeEEEeccccCc----ccccc-----ccccchhhcccccccHHHHhhhhhhhc--
Confidence 344555555 6899999999999999993321 11111 233445566788999999999999995
Q ss_pred hcHHHhhhhC-CCceEEEcCChHH---HHhh-c---------------------CCceEEeCCCceEEecccCCCceEEE
Q 020191 150 KTLKPLSKMS-PNLKVIATPNAKT---LLDP-L---------------------FQNVTYVEPGQSSEIEGRNGSKLRVK 203 (329)
Q Consensus 150 ~tl~~l~~~~-p~~~v~~~~~~~~---~L~~-~---------------------~~~i~~l~~ge~~~~~~~~~~~l~i~ 203 (329)
+.+..+.++. -.-++|.+..+.+ +|-. . ..++..++..|.++++ +++|.
T Consensus 80 aslp~~~qkTsf~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~-----gIkf~ 154 (668)
T KOG1137|consen 80 ASLPFTLQKTSFIGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVN-----GIKFW 154 (668)
T ss_pred ccccceeeeccccceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccC-----CeEEE
Confidence 7777776542 1345666554432 2211 0 1356667777777776 89999
Q ss_pred EecCCCCCCCCCCCcceEEEEecCCcceEEEcCCCC--Cchhhh--cc--cCCcEEEEcc
Q 020191 204 ATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCV--YNQNFL--EK--ERSDIIITPV 257 (329)
Q Consensus 204 ~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~--~~~~~~--~~--~~~Dl~~l~~ 257 (329)
+..+.|.+ ..|-|+++..+ .+++|+||-. ++.+.. +. ..+|+++.+-
T Consensus 155 p~~aGhVl-----gacMf~veiag--v~lLyTGd~sreeDrhl~aae~P~~~~dvli~es 207 (668)
T KOG1137|consen 155 PYHAGHVL-----GACMFMVEIAG--VRLLYTGDYSREEDRHLIAAEMPPTGPDVLITES 207 (668)
T ss_pred eeccchhh-----hheeeeeeece--EEEEeccccchhhcccccchhCCCCCccEEEEEe
Confidence 88765432 25789999854 7999999954 333433 22 3889888774
No 42
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.90 E-value=1.5e-08 Score=93.20 Aligned_cols=155 Identities=17% Similarity=0.119 Sum_probs=87.1
Q ss_pred CCCCEEEEeCCCCCCCChhcHHHhhhhCCCceEEEcCChHH-----HHhhcC--CceEEeCCCceEEecccCCCceEEEE
Q 020191 132 PQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKT-----LLDPLF--QNVTYVEPGQSSEIEGRNGSKLRVKA 204 (329)
Q Consensus 132 p~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v~~~~~~~~-----~L~~~~--~~i~~l~~ge~~~~~~~~~~~l~i~~ 204 (329)
+.+|+||+||.|+|| +.++..|.+.+ ..++++.+.... .+...+ .........+...+. +++++.
T Consensus 61 ~~idai~~TH~H~DH--i~Gl~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 132 (269)
T COG1235 61 SDLDAILLTHEHSDH--IQGLDDLRRAY-TLPIYVNPGTLRASTSDRLLGGFPYLFRHPFPPFSLPAIG-----GLEVTP 132 (269)
T ss_pred cccCeEEEecccHHh--hcChHHHHHHh-cCCcccccceecccchhhhhccchhhhcCCCCcccccccc-----ceeeec
Confidence 479999999999999 58888888754 334444433221 112221 001111222233333 455544
Q ss_pred ecCCCCCC------------C-CCCCcceEEEEecCCcceEEEcCCCCCchhhh-----cccCCcEEEEccCcccCCCcc
Q 020191 205 TAGPVLGP------------P-WQRPENGYLVNSSQGQLTLYYEPHCVYNQNFL-----EKERSDIIITPVIKQLLPKFT 266 (329)
Q Consensus 205 ~p~~~~g~------------~-~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~-----~~~~~Dl~~l~~~g~~~~~~~ 266 (329)
.+..+.-. . ......||.++... ..+.+.+|+.+.+... .....++.+......-.....
T Consensus 133 ~~~~hd~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~vay~~Dt~~~~~~~d~~l~~~~~~~~~~~~~~~~~~gh~~ 210 (269)
T COG1235 133 FPVPHDAIEPVGFVIIRTGRKLHGGTDIGYGLEWRI--GDVAYLTDTELFPSNHDVELLDNGLYPLDIKDRILPDPGHLS 210 (269)
T ss_pred CCCCCccccCCCcccccCcccccccccceeeeeeee--ccEEEccccccCcchhHHHHhcCCccceeeeeccccccCCCC
Confidence 33221100 0 00113467766533 3788999997654322 223555555543111111345
Q ss_pred ccCCHHHHHHHHHHcCCCEEEEeecccccC
Q 020191 267 LVSGQEDAVKLAKLLHAKFIVPMKNGDLDS 296 (329)
Q Consensus 267 ~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~ 296 (329)
.|+..++|+++++++++++++.+|.+....
T Consensus 211 ~h~~~~~a~~~~~~~~~~rivLtHls~~~~ 240 (269)
T COG1235 211 NHLSAEEALELIEKLKPKRLVLTHLSHKND 240 (269)
T ss_pred CchhHHHHHHHHHhCCcceEEEEecCCCCC
Confidence 588999999999999999999999987543
No 43
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.83 E-value=1.1e-08 Score=91.49 Aligned_cols=132 Identities=21% Similarity=0.267 Sum_probs=77.3
Q ss_pred CcEEEEEeCC-cEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhhCCCceE
Q 020191 86 GNSWLWDLDG-VKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKV 164 (329)
Q Consensus 86 hss~li~~~g-~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v 164 (329)
.+++++..++ .++|||+....... +.....+..... +|++|++||.|+|| .+++..+.+..+.+++
T Consensus 25 ~~~~~~~~~~~~~~liD~G~~~~~~----------~~~~~~l~~~~~-~i~~vilTH~H~DH--~gg~~~~~~~~~~~~~ 91 (252)
T COG0491 25 NSVYLLVDGEGGAVLIDTGLGDADA----------EALLEALAALGL-DVDAILLTHGHFDH--IGGAAVLKEAFGAAPV 91 (252)
T ss_pred ccEEEEEcCCCceEEEeCCCCchHH----------HHHHHHHHHcCC-ChheeeecCCchhh--hccHHHHHhhcCCceE
Confidence 3455555544 79999994432100 011111111122 78999999999999 5899988876433667
Q ss_pred EEcCChHHHHhhc-------------C---CceEEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcceEEEEecCC
Q 020191 165 IATPNAKTLLDPL-------------F---QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQG 228 (329)
Q Consensus 165 ~~~~~~~~~L~~~-------------~---~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~ 228 (329)
+..+......... . .....+..++.+.++ +.++++..+|||..| ..+++++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~tpGHT~g------~~~~~~~~~-- 160 (252)
T COG0491 92 IAPAEVPLLLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLG---GLELEVLHTPGHTPG------HIVFLLEDG-- 160 (252)
T ss_pred EccchhhhhhhcccccccccccccCCCCccccceecCCCCEEEec---CeEEEEEECCCCCCC------eEEEEECCc--
Confidence 3333322222111 0 223344567777876 235888888886432 456666652
Q ss_pred cceEEEcCCCCCchh
Q 020191 229 QLTLYYEPHCVYNQN 243 (329)
Q Consensus 229 ~~~i~~sGDt~~~~~ 243 (329)
+++|+||..+...
T Consensus 161 --~~l~~gD~~~~~~ 173 (252)
T COG0491 161 --GVLFTGDTLFAGD 173 (252)
T ss_pred --cEEEecceeccCC
Confidence 4999999877653
No 44
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.53 E-value=4.9e-08 Score=97.70 Aligned_cols=202 Identities=16% Similarity=0.172 Sum_probs=117.5
Q ss_pred CCceEEEEEcC-----------cEEEEEeCCcE-EEEcCccCCCCCCCCCccccCCccccC-CCCCCCCCCCCEEEEeCC
Q 020191 76 TDVFKLTYLEG-----------NSWLWDLDGVK-VLVDPILVGNLDFGIPWLFDAGKKFLK-SFQLSDLPQVDCLLITQS 142 (329)
Q Consensus 76 ~~~~~it~lGh-----------ss~li~~~g~~-ILiDP~~sg~~s~p~~~~~~~~~~~~~-~~~~~~lp~iD~VlISH~ 142 (329)
.+.+.|..||. ++++|+++... ||.|+ |...++ + + .|++- .....-+.++.+|+|||.
T Consensus 440 ~~~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDC---GEgTlg-q-l----~R~YG~~~~~~~lr~LraI~ISHl 510 (746)
T KOG2121|consen 440 KKDPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDC---GEGTLG-Q-L----VRHYGVENVDTALRKLRAIFISHL 510 (746)
T ss_pred cCCcEEEEecCCccCCCcccceEEEEEeccCCccEEeec---CCchHH-H-H----HHHhhhcchHHHHHhHHHHHHHhh
Confidence 35788999984 68899986655 99999 766531 1 1 12111 011122346789999999
Q ss_pred CCCCCChhcHHHhhhh---C---CCceEEEc-CC-hHHHHhhcC-------CceEEeC-CCceEE-----------ecc-
Q 020191 143 LDDHCHLKTLKPLSKM---S---PNLKVIAT-PN-AKTLLDPLF-------QNVTYVE-PGQSSE-----------IEG- 194 (329)
Q Consensus 143 H~DHld~~tl~~l~~~---~---p~~~v~~~-~~-~~~~L~~~~-------~~i~~l~-~ge~~~-----------~~~- 194 (329)
|.||. .+-+..|+++ . +.-+++++ |. -..+|+.+- ....-+. .++.+. +..
T Consensus 511 HADHh-~Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~s~~~~~~~~~ 589 (746)
T KOG2121|consen 511 HADHH-LGLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPDSVPERLLSYL 589 (746)
T ss_pred ccccc-ccHHHHHHHHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhhhhccCccccchhhhhHH
Confidence 99995 3333333332 1 12233332 32 234665541 0000011 111111 000
Q ss_pred -cCCCceEEEEecCCCCCCCCCCCcceEEEEecCCcceEEEcCCCCCchhhhccc-CCcEEEEccCcccCC----Ccccc
Q 020191 195 -RNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKE-RSDIIITPVIKQLLP----KFTLV 268 (329)
Q Consensus 195 -~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~~-~~Dl~~l~~~g~~~~----~~~~h 268 (329)
...+...|...|+.|.. ...|..|.... +.+|.|+|||...+.+.+.+ +.||+|.+.+-...- --.-|
T Consensus 590 l~~~~l~~i~tc~viHCp-----~syg~~i~~~~-~~Ki~YSGDTrP~~~~v~~g~datlLIHEAT~ED~l~EeAv~k~H 663 (746)
T KOG2121|consen 590 LRELGLESIQTCPVIHCP-----QSYGCSITHGS-GWKIVYSGDTRPCEDLVKAGKDATLLIHEATLEDDLEEEAVEKGH 663 (746)
T ss_pred HHhcCceeEEecCcEecC-----hhhceeEeccc-ceEEEEcCCCCCchhHhhhccCCceEEeehhhchhHHHHHHHhCC
Confidence 01123445555554321 13466666543 35999999999998888886 999999885311100 01238
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeccc
Q 020191 269 SGQEDAVKLAKLLHAKFIVPMKNGD 293 (329)
Q Consensus 269 ~~~~ea~~~~~~l~~k~~ip~H~~~ 293 (329)
.+..||++..+..+++.+|.+|++-
T Consensus 664 ST~sEAi~V~~~m~ar~liLTHFSQ 688 (746)
T KOG2121|consen 664 STTSEAISVAKKMNAKRLILTHFSQ 688 (746)
T ss_pred CCHHHHHHHHHhccchhhhhhhhhc
Confidence 8999999999999999999999975
No 45
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=98.23 E-value=1.1e-05 Score=80.40 Aligned_cols=149 Identities=21% Similarity=0.293 Sum_probs=98.1
Q ss_pred CcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhhC-CCceE
Q 020191 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMS-PNLKV 164 (329)
Q Consensus 86 hss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~-p~~~v 164 (329)
-=|+++|++|.+|||||+|... +..+++ +.+ ...++.||+||+||...=| +++|.....+. =+++|
T Consensus 15 ~~cyllqiD~~~iLiDcGwd~~--f~~~~i--------~~l-~~~i~~iDaILLShpd~~h--lGaLpY~~~k~gl~~~V 81 (764)
T KOG1135|consen 15 PLCYLLQIDGVRILIDCGWDES--FDMSMI--------KEL-KPVIPTIDAILLSHPDILH--LGALPYAVGKLGLNAPV 81 (764)
T ss_pred cceEEEEEcCeEEEEeCCCcch--hccchh--------hhh-hcccccccEEEecCCChHH--hccchhhHhhCCccceE
Confidence 3489999999999999977543 223333 122 2346799999999998888 58888776542 24788
Q ss_pred EEcCChHH--------HHhh-----------------cCCceEEeCCCceEEecccCCCceEEEEecCCCC-CCCCCCCc
Q 020191 165 IATPNAKT--------LLDP-----------------LFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVL-GPPWQRPE 218 (329)
Q Consensus 165 ~~~~~~~~--------~L~~-----------------~~~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~-g~~~~~~~ 218 (329)
|++-.+.+ ++.. .|++|+.++.-|.+.+.+ .+.|++|++.+|.|. | .
T Consensus 82 YAT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~g-k~~Gl~itaynAGhmiG------G 154 (764)
T KOG1135|consen 82 YATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKG-KGSGLTITAYNAGHMIG------G 154 (764)
T ss_pred EEecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEecc-ccCceEEeeecCCCccC------c
Confidence 88755422 1222 146899999999988863 246899999998632 2 2
Q ss_pred ceEEEEecCCcceEEEcCCCCCchh-------hhcccCCcEEEEc
Q 020191 219 NGYLVNSSQGQLTLYYEPHCVYNQN-------FLEKERSDIIITP 256 (329)
Q Consensus 219 ~g~~i~~~~~~~~i~~sGDt~~~~~-------~~~~~~~Dl~~l~ 256 (329)
+-|.|...+ .+|.|+-|-....+ |....++.+++..
T Consensus 155 sIWkI~k~~--E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITd 197 (764)
T KOG1135|consen 155 SIWKISKVG--EDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITD 197 (764)
T ss_pred eEEEEEecC--ceEEEEEecccchhcccCCccccccCCcceEEec
Confidence 446666643 58889888543221 1122367777664
No 46
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=97.93 E-value=4.6e-05 Score=64.83 Aligned_cols=157 Identities=16% Similarity=0.239 Sum_probs=81.2
Q ss_pred cCcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhhCCCceE
Q 020191 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKV 164 (329)
Q Consensus 85 Ghss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v 164 (329)
+-+|+++...+.+||||| -+.+. . ..+ .+..+..+++|+|||. || ...-+.+++++ .++|
T Consensus 22 dfng~~~~~p~GnilIDP---~~ls~----~---~~~-----~l~a~ggv~~IvLTn~--dH--vR~A~~ya~~~-~a~i 81 (199)
T PF14597_consen 22 DFNGHAWRRPEGNILIDP---PPLSA----H---DWK-----HLDALGGVAWIVLTNR--DH--VRAAEDYAEQT-GAKI 81 (199)
T ss_dssp EEEEEEE--TT--EEES--------H----H---HHH-----HHHHTT--SEEE-SSG--GG---TTHHHHHHHS---EE
T ss_pred CceeEEEEcCCCCEEecC---ccccH----H---HHH-----HHHhcCCceEEEEeCC--hh--HhHHHHHHHHh-CCee
Confidence 456788888888999999 33320 0 001 1234468899999987 99 58888899887 8999
Q ss_pred EEcCChHHHHhhcCCceEEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcceEEEEecCCcceEEEcCCCCCchhh
Q 020191 165 IATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNF 244 (329)
Q Consensus 165 ~~~~~~~~~L~~~~~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~ 244 (329)
+++...+..+.- .--..++.|+++ + +++++..+|++++ + ....++++. +++++||.....
T Consensus 82 ~~p~~d~~~~p~--~~D~~l~dge~i-~-----~g~~vi~l~G~kt-p----GE~ALlled-----~vLi~GDl~~~~-- 141 (199)
T PF14597_consen 82 YGPAADAAQFPL--ACDRWLADGEEI-V-----PGLWVIHLPGSKT-P----GELALLLED-----RVLITGDLLRSH-- 141 (199)
T ss_dssp EEEGGGCCC-SS----SEEE-TT-BS-S-----TTEEEEEE-SSSS-T----TEEEEEETT-----TEEEESSSEEBS--
T ss_pred eccHHHHhhCCC--CCccccccCCCc-c-----CceEEEEcCCCCC-C----ceeEEEecc-----ceEEecceeeec--
Confidence 998765432210 112356677632 3 3899999998532 1 123444432 689999954332
Q ss_pred hcccCCcEEEEccCcccCCCccccCCHHHHHHHHHHc----CCCEEEEeecc
Q 020191 245 LEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLL----HAKFIVPMKNG 292 (329)
Q Consensus 245 ~~~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~~~~l----~~k~~ip~H~~ 292 (329)
.+-++.++|- ..+ +++.++.+.+++| +-+.+++.|.-
T Consensus 142 ---~~g~l~lLpd-~k~-------~d~~~a~~sl~RLa~~~~fe~lLvGdGw 182 (199)
T PF14597_consen 142 ---PAGSLSLLPD-EKL-------YDPTEARASLRRLAAYPDFEWLLVGDGW 182 (199)
T ss_dssp ---STTS-EE--G-GG--------S-HHHHHHHHHHHHT-TT--EEEESBB-
T ss_pred ---CCCCeEECCh-HHc-------CCHHHHHHHHHHHhccccccEEeecCCc
Confidence 2456777774 222 2567776666655 67889998864
No 47
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=97.75 E-value=2.5e-05 Score=65.84 Aligned_cols=110 Identities=25% Similarity=0.353 Sum_probs=64.0
Q ss_pred CCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCC-CCCEEEEeCCCCCCCChhcHHHhhhhCCCceEEEcC-ChH
Q 020191 94 DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLP-QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATP-NAK 171 (329)
Q Consensus 94 ~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp-~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v~~~~-~~~ 171 (329)
+|+.+|||||+.. ++ |-.+ -+.+|. ++-+-+-||.|.||+ -+-..|+...|.++-+++. .|.
T Consensus 31 ~~~AviIDPV~et-~~-----------RD~q--likdLgl~LiYa~NTH~HADHi--TGtg~Lkt~~pg~kSVis~~SGa 94 (237)
T KOG0814|consen 31 TGKAVIIDPVLET-VS-----------RDAQ--LIKDLGLDLIYALNTHVHADHI--TGTGLLKTLLPGCKSVISSASGA 94 (237)
T ss_pred CCceEEecchhhc-cc-----------chHH--HHHhcCceeeeeecceeecccc--cccchHHHhcccHHHHhhhcccc
Confidence 6889999998853 22 1100 022332 556889999999996 3334444433444322222 221
Q ss_pred HHHhhcCCceEEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcceEEEEecCCcceEEEcCCCC
Q 020191 172 TLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCV 239 (329)
Q Consensus 172 ~~L~~~~~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~ 239 (329)
+ .-.-++.|+.++++ +-.+++.++||+.-| ..-|++.. .+..|+||+.
T Consensus 95 k-------AD~~l~~Gd~i~~G---~~~le~ratPGHT~G------C~TyV~~d----~~~aFTGDal 142 (237)
T KOG0814|consen 95 K-------ADLHLEDGDIIEIG---GLKLEVRATPGHTNG------CVTYVEHD----LRMAFTGDAL 142 (237)
T ss_pred c-------cccccCCCCEEEEc---cEEEEEecCCCCCCc------eEEEEecC----cceeeeccee
Confidence 1 12346779999997 345667889986432 23555543 3678899864
No 48
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=97.45 E-value=0.00092 Score=65.36 Aligned_cols=131 Identities=16% Similarity=0.175 Sum_probs=87.9
Q ss_pred CCCEEEEeCCCCCCCChhcHHHhhhhCCCceEEEcCChHHHHhhc----CCceEEeCCCceEEecccCCCceEEEEecCC
Q 020191 133 QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPL----FQNVTYVEPGQSSEIEGRNGSKLRVKATAGP 208 (329)
Q Consensus 133 ~iD~VlISH~H~DHld~~tl~~l~~~~p~~~v~~~~~~~~~L~~~----~~~i~~l~~ge~~~~~~~~~~~l~i~~~p~~ 208 (329)
..-+-++||.|.|| +.+|..--. ..++|+++.+++.+... ...++.++-++.+.+. ++.++++++.
T Consensus 112 ~~s~yFLsHFHSDH--y~GL~~sW~---~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i~-----~~~vt~ldAn 181 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDH--YIGLTKSWS---HPPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEIP-----GIQVTLLDAN 181 (481)
T ss_pred ccceeeeecccccc--ccccccccc---CCcccccccchhhhhhhcccChhhceeecCCCceeec-----ceEEEEeccc
Confidence 55688999999999 455433222 34599999998855433 3568889999999997 7999999996
Q ss_pred CCCCCCCCCcceEEEEecCCcceEEEcCCCCCchhhhc------ccCCcEEEEccCcccCCCccccCCHHHHHHHHHHc
Q 020191 209 VLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLE------KERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLL 281 (329)
Q Consensus 209 ~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~------~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~~~~l 281 (329)
|. + ....|+++...+ ..++++||-.+.....+ ...+|.+.++. -.-+|.+.+ -..+++++.+.++
T Consensus 182 HC-P----Ga~mf~F~~~~~-~~~lhtGDFR~s~~m~~~p~~~~~~~i~~lyLDt-Tycnp~y~F-psq~esvq~v~~~ 252 (481)
T KOG1361|consen 182 HC-P----GAVMFLFELSFG-PCILHTGDFRASADMSKEPALTLEQTIDILYLDT-TYCNPKYDF-PSQEESVQEVVDV 252 (481)
T ss_pred cC-C----CceEEEeecCCC-ceEEecCCcccChhhhhChHHhcCCccceEEEee-cccCCCCCC-ccHHHHHHHHHHH
Confidence 53 1 235677777543 59999999888765433 24889999886 223343222 1334555555443
No 49
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=96.71 E-value=0.018 Score=54.53 Aligned_cols=148 Identities=12% Similarity=0.058 Sum_probs=81.2
Q ss_pred CCCEEEEeCCCCCCCChhcHHHhhhhC-----CCceEEEcCChHHHHhhc-CC-------------------ceEEeCCC
Q 020191 133 QVDCLLITQSLDDHCHLKTLKPLSKMS-----PNLKVIATPNAKTLLDPL-FQ-------------------NVTYVEPG 187 (329)
Q Consensus 133 ~iD~VlISH~H~DHld~~tl~~l~~~~-----p~~~v~~~~~~~~~L~~~-~~-------------------~i~~l~~g 187 (329)
.|...+|||.|.||+ .++---.... ..-+||+.+.+.+.|++. |. +...++.+
T Consensus 79 ~I~~ylItH~HLDHi--~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~ 156 (335)
T PF02112_consen 79 HIKGYLITHPHLDHI--AGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPG 156 (335)
T ss_pred hhheEEecCCchhhH--HHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeecccc
Confidence 688999999999994 5553211111 245688888888777642 11 22334444
Q ss_pred ceEEecccC--------CCceEEEEecCCCCCCCCCC-CcceEEEEecCCcceEEEcCCCCCchh------------hh-
Q 020191 188 QSSEIEGRN--------GSKLRVKATAGPVLGPPWQR-PENGYLVNSSQGQLTLYYEPHCVYNQN------------FL- 245 (329)
Q Consensus 188 e~~~~~~~~--------~~~l~i~~~p~~~~g~~~~~-~~~g~~i~~~~~~~~i~~sGDt~~~~~------------~~- 245 (329)
+...+.... ..+..++++|..|....... ..++|+|+....+..|+|-||++.+.- ..
T Consensus 157 ~~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap 236 (335)
T PF02112_consen 157 ELIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYAAP 236 (335)
T ss_pred ceeeccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHHHh
Confidence 333332000 00123334554332110000 146899998764568999999986521 11
Q ss_pred --cccCCcEEEEccCcccC-C--CccccCCHHHHHHHHHHcC
Q 020191 246 --EKERSDIIITPVIKQLL-P--KFTLVSGQEDAVKLAKLLH 282 (329)
Q Consensus 246 --~~~~~Dl~~l~~~g~~~-~--~~~~h~~~~ea~~~~~~l~ 282 (329)
..+...-.+++|.-... + ...-|+.|.-.++-++.|.
T Consensus 237 ~I~~~~LkaI~IEcS~~~~~~d~~LyGHLtP~~Li~EL~~L~ 278 (335)
T PF02112_consen 237 KIASGKLKAIFIECSYPNSQPDSQLYGHLTPKHLIEELKVLA 278 (335)
T ss_pred hccccccCEEEEEeCCCCCCCchHhhccCCHHHHHHHHHHHH
Confidence 12477778898721111 1 1123999988777766664
No 50
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.021 Score=52.33 Aligned_cols=165 Identities=18% Similarity=0.132 Sum_probs=92.4
Q ss_pred EEEEcCcEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhhCC
Q 020191 81 LTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSP 160 (329)
Q Consensus 81 it~lGhss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~~p 160 (329)
....|.++ ++..++..+++|..++.-+ ++ .++++ .||.|++||.|.+|+ +.+..+..
T Consensus 91 ~~~~~~~t-l~~d~~~v~v~~~gls~la-----------k~---~vt~d---~i~~vv~t~~~~~hl--gn~~~f~~--- 147 (302)
T KOG4736|consen 91 YSLQGQIT-LVVDGGDVVVVDTGLSVLA-----------KE---GVTLD---QIDSVVITHKSPGHL--GNNNLFPQ--- 147 (302)
T ss_pred hhhhcccc-eeecCCceEEEecCCchhh-----------hc---CcChh---hcceeEEeccCcccc--cccccccC---
Confidence 34445555 4445677899999554111 11 23333 789999999999995 66655543
Q ss_pred CceEEEcCChHHHHhhcCCc--eEEeCCCceEEecccCCCceEEEEecCCCCCCCCCCCcceEEEEecCCcceEEEcCCC
Q 020191 161 NLKVIATPNAKTLLDPLFQN--VTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHC 238 (329)
Q Consensus 161 ~~~v~~~~~~~~~L~~~~~~--i~~l~~ge~~~~~~~~~~~l~i~~~p~~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt 238 (329)
.+++.. -++..+.+ -.+++....++++ .++.+..+||+ ..+ ..+.++.......+++++||.
T Consensus 148 -sp~l~~-----s~e~~gr~~~pt~l~e~~~~~l~----~~~~V~~TpGh-t~~-----~isvlv~n~~~~GTv~itGDL 211 (302)
T KOG4736|consen 148 -SPILYH-----SMEYIGRHVTPTELDERPYLKLS----PNVEVWKTPGH-TQH-----DISVLVHNVDLYGTVAITGDL 211 (302)
T ss_pred -CHHHhh-----hhhhcCCccChhhhccCCccccC----CceeEeeCCCC-CCc-----ceEEEEEeecccceEEEEeec
Confidence 222221 12222222 2456667778886 58999999995 221 234444433333499999998
Q ss_pred CCchhhhcccCCcEEEEccCcccCCCccccCCHHHHHHHHHH-c---CCCEEEEeecccccCc
Q 020191 239 VYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKL-L---HAKFIVPMKNGDLDSK 297 (329)
Q Consensus 239 ~~~~~~~~~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~~~~-l---~~k~~ip~H~~~f~~~ 297 (329)
....+.. ...|.++..- + ..+.+++.=.+ . =++.++|.|...|...
T Consensus 212 f~~~~dl--de~d~i~~~e-~----------s~d~~~kr~~r~~~v~l~D~ivpgHg~~f~v~ 261 (302)
T KOG4736|consen 212 FPREEDL--DEKDDIMSQE-G----------SEDNAAKRQSRNRYVCLADWIVPGHGPPFRVL 261 (302)
T ss_pred ccCCccc--cchhhhhhhc-c----------CCchhhhhhhhhcEEEEeeeeecCCCCceeec
Confidence 6543322 1233222322 2 12222222111 1 3689999999988765
No 51
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.78 E-value=0.094 Score=51.27 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=42.0
Q ss_pred cEEEEEeCCcEEEEcCccCCCCCC-CCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHhhhh----CCC
Q 020191 87 NSWLWDLDGVKVLVDPILVGNLDF-GIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM----SPN 161 (329)
Q Consensus 87 ss~li~~~g~~ILiDP~~sg~~s~-p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~~~----~p~ 161 (329)
|--+|+.+-.-|+|||..+....- -.... ... ..+ .+|-+|+.||.|.|| +++++-+.+. ..+
T Consensus 127 NITfveGdtg~IViDpL~t~~tA~aAldl~-------~~~--~g~-rPV~aVIYtHsH~DH--fGGVkGiv~eadV~sGk 194 (655)
T COG2015 127 NITFVEGDTGWIVIDPLVTPETAKAALDLY-------NQH--RGQ-RPVVAVIYTHSHSDH--FGGVKGIVSEADVKSGK 194 (655)
T ss_pred ceEEEcCCcceEEEcccCCcHHHHHHHHHH-------HHh--cCC-CCeEEEEeecccccc--cCCeeeccCHHHcccCc
Confidence 344677777789999977642210 00000 001 112 268899999999999 4888877542 235
Q ss_pred ceEEEcC
Q 020191 162 LKVIATP 168 (329)
Q Consensus 162 ~~v~~~~ 168 (329)
++|+++.
T Consensus 195 V~iiAP~ 201 (655)
T COG2015 195 VQIIAPA 201 (655)
T ss_pred eeEecch
Confidence 6776643
No 52
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=92.32 E-value=0.46 Score=43.35 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=59.2
Q ss_pred CCCEEEEeCCCCCCCChhcHH---HhhhhCCCceEEEcCChHHHHhhc-------------C---CceEEeCCCceEEec
Q 020191 133 QVDCLLITQSLDDHCHLKTLK---PLSKMSPNLKVIATPNAKTLLDPL-------------F---QNVTYVEPGQSSEIE 193 (329)
Q Consensus 133 ~iD~VlISH~H~DHld~~tl~---~l~~~~p~~~v~~~~~~~~~L~~~-------------~---~~i~~l~~ge~~~~~ 193 (329)
.|.--+|||.|.||+ .+.+- ...++. +-.+|..+.+.+.|++. + -+...+++-+...+.
T Consensus 112 ~I~~y~ITH~HLDHI-sGlVinSp~~~~qk-kkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt 189 (356)
T COG5212 112 SINSYFITHAHLDHI-SGLVINSPDDSKQK-KKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLT 189 (356)
T ss_pred hhhheEeccccccch-hceeecCccccccC-CceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeee
Confidence 677889999999996 22221 112222 35788888888777653 1 134455565554443
Q ss_pred ccCCCceEEEEecCCCCCCCCCCC--cceEEEEecCCcceEEEcCCCCCch
Q 020191 194 GRNGSKLRVKATAGPVLGPPWQRP--ENGYLVNSSQGQLTLYYEPHCVYNQ 242 (329)
Q Consensus 194 ~~~~~~l~i~~~p~~~~g~~~~~~--~~g~~i~~~~~~~~i~~sGDt~~~~ 242 (329)
--.+++.+.|.+ +|...... ...|++.......-+.+.||+..+.
T Consensus 190 ---~t~l~~~pfpv~-Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~ 236 (356)
T COG5212 190 ---LTRLTGEPFPVS-HGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDD 236 (356)
T ss_pred ---eeeecceeeecc-CCcccCCcccceEEEEecCCCcceEEEecCCCcch
Confidence 013555666764 34322222 2456666653234677789987653
No 53
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=79.99 E-value=2.4 Score=27.34 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=23.5
Q ss_pred cccCCHHHHHHHHHHcCCCEEEEeecc
Q 020191 266 TLVSGQEDAVKLAKLLHAKFIVPMKNG 292 (329)
Q Consensus 266 ~~h~~~~ea~~~~~~l~~k~~ip~H~~ 292 (329)
.-|.+.++.+++++.++|+.++++|..
T Consensus 15 SgHad~~~L~~~i~~~~p~~vilVHGe 41 (43)
T PF07521_consen 15 SGHADREELLEFIEQLNPRKVILVHGE 41 (43)
T ss_dssp SSS-BHHHHHHHHHHHCSSEEEEESSE
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEecCC
Confidence 448899999999999999999999974
No 54
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=73.89 E-value=27 Score=35.25 Aligned_cols=44 Identities=2% Similarity=0.036 Sum_probs=33.8
Q ss_pred ccCCHHHHHHHHHHcCCCEEEEeecccccCccchhhhhcccCCHHHHHHHHHHhcCCc
Q 020191 267 LVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKCKIYKCYDRK 324 (329)
Q Consensus 267 ~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~~~~~~~~~~~~~~f~~~~~~~~~~k 324 (329)
-|.+..+..++++++.|+.+|.+|... .....++..+..++.+-
T Consensus 397 Ahvdy~q~s~fi~~i~~~~lilVHGE~--------------neM~rLKs~L~~~f~d~ 440 (668)
T KOG1137|consen 397 AHVDYLQNSEFIADITPPHLILVHGEA--------------NEMMRLKSALEAAFRDG 440 (668)
T ss_pred echhhhhhHHHHHHhCCCeEEEEeccc--------------chhHHHHHHHHHHhccC
Confidence 388999999999999999999999863 23456666666665544
No 55
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=67.79 E-value=9.4 Score=26.95 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=32.9
Q ss_pred CcEEEEEeCCcEEEE-cCccCCCCCCCCCccccCCccccC--CCCCCCCCCCCEEEEeCCC-CCCC
Q 020191 86 GNSWLWDLDGVKVLV-DPILVGNLDFGIPWLFDAGKKFLK--SFQLSDLPQVDCLLITQSL-DDHC 147 (329)
Q Consensus 86 hss~li~~~g~~ILi-DP~~sg~~s~p~~~~~~~~~~~~~--~~~~~~lp~iD~VlISH~H-~DHl 147 (329)
+.|++|..+..+.|+ +. +... + |.+. .+. +.++..|++|+.. +|++
T Consensus 12 ~p~l~l~~d~~rYlFGn~---gEGt---Q-------R~~~e~~ik---l~kl~~IFlT~~~~w~~~ 61 (63)
T PF13691_consen 12 GPSLLLFFDSRRYLFGNC---GEGT---Q-------RACNEHKIK---LSKLNDIFLTGLSSWENI 61 (63)
T ss_pred CCEEEEEeCCceEEeccC---CcHH---H-------HHHHHcCCC---ccccceEEECCCCccccc
Confidence 378999999999999 88 5432 1 2221 232 4588999999999 8874
No 56
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=65.88 E-value=3 Score=42.97 Aligned_cols=53 Identities=23% Similarity=0.436 Sum_probs=35.2
Q ss_pred cEEEEEeCCcEEEEcCccCCCCCCCCCccccCCccccCCCCCCCCCCCCEEEEeCCCCCCCChhcHHHh
Q 020191 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPL 155 (329)
Q Consensus 87 ss~li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l 155 (329)
.+-|+..+|.+||+|-+ +.+-+ ++ |- + +.-|.+||+||+||--.|-| ++|..|
T Consensus 49 daALFavnGf~iLv~Gg-serKS-~f-wk----------l-VrHldrVdaVLLthpg~dNL--pginsl 101 (934)
T KOG3592|consen 49 DAALFAVNGFNILVNGG-SERKS-CF-WK----------L-VRHLDRVDAVLLTHPGADNL--PGINSL 101 (934)
T ss_pred cceeEeecceEEeecCC-ccccc-ch-HH----------H-HHHHhhhhhhhhcccccCcc--ccchHH
Confidence 45677899999999983 23223 21 21 1 23455899999999999996 644433
No 57
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=48.51 E-value=7.9 Score=35.18 Aligned_cols=62 Identities=6% Similarity=-0.184 Sum_probs=42.4
Q ss_pred EEEeCCcEEEEcCccCCCCCCCCCccccCCccccC-CCCCCCCCCCCEEEEeCCCCCCCChhcHHHh
Q 020191 90 LWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLK-SFQLSDLPQVDCLLITQSLDDHCHLKTLKPL 155 (329)
Q Consensus 90 li~~~g~~ILiDP~~sg~~s~p~~~~~~~~~~~~~-~~~~~~lp~iD~VlISH~H~DHld~~tl~~l 155 (329)
+....+-..+.||.++.. + |..+. ++++.+. .-+++.++.++.++++|+|+||.++.++...
T Consensus 98 ~~~~tdpvf~d~~if~s~-g-Pkry~--~pp~~~~~~p~~d~~~vsh~h~dhld~~~~~~~~~~~~~ 160 (343)
T KOG3798|consen 98 VKFVTDPVWADRASFTSF-G-PKRYR--PPPMKLEDLPDLDFAVVSHDHYDHLDADAVKKITDRNPQ 160 (343)
T ss_pred cEEecchhhccchhhccc-C-ccccc--CCchhhccCCCCceeccccccccccchHHHHhhhccCcc
Confidence 344567778899998865 3 44343 3444333 3355667789999999999999987766544
No 58
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=38.59 E-value=22 Score=34.08 Aligned_cols=45 Identities=24% Similarity=0.329 Sum_probs=34.3
Q ss_pred CCCEEEE--eCCCCCCCChhcHHHhhhhCCCceEEEcC----ChHHHHhhcC
Q 020191 133 QVDCLLI--TQSLDDHCHLKTLKPLSKMSPNLKVIATP----NAKTLLDPLF 178 (329)
Q Consensus 133 ~iD~VlI--SH~H~DHld~~tl~~l~~~~p~~~v~~~~----~~~~~L~~~~ 178 (329)
.+|+|+| +|.|..|. +..++.+++.+|+++|++.. .++..|-.+|
T Consensus 120 gvD~ivID~a~g~s~~~-~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aG 170 (352)
T PF00478_consen 120 GVDVIVIDSAHGHSEHV-IDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAG 170 (352)
T ss_dssp T-SEEEEE-SSTTSHHH-HHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT
T ss_pred CCCEEEccccCccHHHH-HHHHHHHHHhCCCceEEecccCCHHHHHHHHHcC
Confidence 6788888 79999998 78899999999889887643 3455555554
No 59
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=38.43 E-value=41 Score=32.02 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=34.8
Q ss_pred CCCCEEE--EeCCCCCCCChhcHHHhhhhCCCceEEEcC----ChHHHHhhcCCc
Q 020191 132 PQVDCLL--ITQSLDDHCHLKTLKPLSKMSPNLKVIATP----NAKTLLDPLFQN 180 (329)
Q Consensus 132 p~iD~Vl--ISH~H~DHld~~tl~~l~~~~p~~~v~~~~----~~~~~L~~~~~~ 180 (329)
+.+|+|+ ++|.|.++. +..++.+++.+|++.|++.. .++..|..+|..
T Consensus 121 ~g~D~iviD~AhGhs~~~-i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD 174 (346)
T PRK05096 121 PALNFICIDVANGYSEHF-VQFVAKAREAWPDKTICAGNVVTGEMVEELILSGAD 174 (346)
T ss_pred CCCCEEEEECCCCcHHHH-HHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCC
Confidence 3678777 489999997 88899999999988877643 345555555533
No 60
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.04 E-value=83 Score=25.65 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=50.7
Q ss_pred eEEEEecCCcceEEEcCCCCCchh--------------hhcccCCcEEEEccCcccCCCccccCCHHHHHHHHHHcCCCE
Q 020191 220 GYLVNSSQGQLTLYYEPHCVYNQN--------------FLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKF 285 (329)
Q Consensus 220 g~~i~~~~~~~~i~~sGDt~~~~~--------------~~~~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~~~~l~~k~ 285 (329)
+|.+.+. .-||..|+.+... +.+....|++++= +|--.|.. -.+++++.++++++.++.
T Consensus 46 ~favRDk----e~~fipd~d~ek~rkl~~~d~G~ql~e~e~~n~aDvvVLl-GGLaMP~~--gv~~d~~kel~ee~~~kk 118 (154)
T COG4090 46 AFAVRDK----EQYFIPDLDFEKARKLELTDHGYQLGEREELNSADVVVLL-GGLAMPKI--GVTPDDAKELLEELGNKK 118 (154)
T ss_pred HHHhhch----heeecCCcChhHhheeeeeccceecCCccccccccEEEEE-cccccCcC--CCCHHHHHHHHHhcCCCc
Confidence 6677652 4567777654321 1111258888875 35555533 338999999999999887
Q ss_pred EEEee-cccccCccchhhh
Q 020191 286 IVPMK-NGDLDSKGFLASI 303 (329)
Q Consensus 286 ~ip~H-~~~f~~~g~~~~~ 303 (329)
+|.+- +..|..+||-..+
T Consensus 119 liGvCfm~mF~ragW~e~l 137 (154)
T COG4090 119 LIGVCFMNMFERAGWDEEL 137 (154)
T ss_pred eEEeeHHHHHHHcCcchhc
Confidence 77664 4789999987655
No 61
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=36.10 E-value=27 Score=28.98 Aligned_cols=67 Identities=16% Similarity=0.114 Sum_probs=43.3
Q ss_pred EcCCCCCc-hhhhcccCCcEEEEccCcccCCCccccCCHHHHHHHHHHcCCCEEEEeec-ccccCccchhhh
Q 020191 234 YEPHCVYN-QNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKN-GDLDSKGFLASI 303 (329)
Q Consensus 234 ~sGDt~~~-~~~~~~~~~Dl~~l~~~g~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H~-~~f~~~g~~~~~ 303 (329)
..+|.||. -.-.....+|++++- +|--.|.. ..+++++.+.+.++.++.++.+-+ +.|.-+||..++
T Consensus 64 ~~~~~Gmq~~~~~~~~~~D~vVlm-GGLAMP~~--~v~~e~v~~li~ki~~~~iiGiCFms~F~kagW~~~I 132 (147)
T PF09897_consen 64 EVTDIGMQVLGEKKDPHPDVVVLM-GGLAMPKS--GVTPEDVNELIKKISPKKIIGICFMSMFEKAGWDDKI 132 (147)
T ss_dssp EEETTEEE-EEEE--S-EEEEEEE-GGGGSTTT--S--HHHHHHHHHHHEEEEEEEEEETTHHHHTTHHHHS
T ss_pred eccCcccccccccCCCCCCEEEEE-cccccCCC--CCCHHHHHHHHHHhCcCCEEEEehHHHHHHcCCcccc
Confidence 35666654 211122248887775 46555533 348999999999999887777654 789999998765
No 62
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=33.68 E-value=56 Score=31.09 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=34.4
Q ss_pred CCCCEEE--EeCCCCCCCChhcHHHhhhhCCCceEEEc----CChHHHHhhcCCc
Q 020191 132 PQVDCLL--ITQSLDDHCHLKTLKPLSKMSPNLKVIAT----PNAKTLLDPLFQN 180 (329)
Q Consensus 132 p~iD~Vl--ISH~H~DHld~~tl~~l~~~~p~~~v~~~----~~~~~~L~~~~~~ 180 (329)
+.+|+|+ ++|.|.++. +..++.+++.+|+..++.. +.++..|..+|..
T Consensus 120 ~~~d~iviD~AhGhs~~~-i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD 173 (343)
T TIGR01305 120 PQLKFICLDVANGYSEHF-VEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGAD 173 (343)
T ss_pred CCCCEEEEECCCCcHHHH-HHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCC
Confidence 4578777 489999997 8889999998888777654 4445555555533
No 63
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=31.86 E-value=43 Score=32.73 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=26.3
Q ss_pred CccccCCHHHHHHHHHHcCCCEEEEeeccc
Q 020191 264 KFTLVSGQEDAVKLAKLLHAKFIVPMKNGD 293 (329)
Q Consensus 264 ~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~ 293 (329)
.+..|.+.+|..++++.++||.+||+|...
T Consensus 357 h~SgHa~~~dl~~~i~~~~Pk~~ipvHge~ 386 (422)
T TIGR00649 357 HVSGHASQEDHKLLLRLLKPKYIIPVHGEY 386 (422)
T ss_pred EecCCCCHHHHHHHHHHhCCCEEEecCCcH
Confidence 445688999999999999999999999863
No 64
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=30.06 E-value=58 Score=25.27 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.7
Q ss_pred ccccCCHHHHHHHHHHcCCCEEEEe
Q 020191 265 FTLVSGQEDAVKLAKLLHAKFIVPM 289 (329)
Q Consensus 265 ~~~h~~~~ea~~~~~~l~~k~~ip~ 289 (329)
+..|.+..|..+.++.++++.++|+
T Consensus 81 YSeHSSf~EL~~Fv~~l~P~~IiPt 105 (110)
T PF07522_consen 81 YSEHSSFSELKEFVSFLKPKKIIPT 105 (110)
T ss_pred cccCCCHHHHHHHHHhcCCcEEEcc
Confidence 3569999999999999999999996
No 65
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=25.57 E-value=1e+02 Score=30.37 Aligned_cols=51 Identities=10% Similarity=0.219 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHcCCC-----EEEEeecccccCccchhhhhcccCCHHHHHHHHHHhcCCcceecC
Q 020191 268 VSGQEDAVKLAKLLHAK-----FIVPMKNGDLDSKGFLASIIQSEGTVESFKCKIYKCYDRKFCYSC 329 (329)
Q Consensus 268 h~~~~ea~~~~~~l~~k-----~~ip~H~~~f~~~g~~~~~~~~~~~~~~f~~~~~~~~~~k~~~~~ 329 (329)
.|++++.+++++.|+|+ +.+-+=+|.-..+.. .=.+.+.|+++ +.+++|+|
T Consensus 289 ~~~p~~l~~L~~~LnP~~epGRlTLI~RmGa~kV~~~----------LP~li~aV~~~-G~~VvW~c 344 (443)
T TIGR01358 289 SMTPDELLRLIERLNPENEPGRLTLISRMGADKIADK----------LPPLLRAVKAA-GRRVVWVC 344 (443)
T ss_pred CCCHHHHHHHHHHhCCCCCCceEEEEeccCchHHHHh----------HHHHHHHHHHc-CCceEEee
Confidence 35899999999999875 333344443222111 22334555555 78999999
No 66
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=21.68 E-value=1.3e+02 Score=29.97 Aligned_cols=51 Identities=12% Similarity=0.164 Sum_probs=31.4
Q ss_pred cCCHHHHHHHHHHcCCCE-----EEEeecccccCccchhhhhcccCCHHHHHHHHHHhcCCcceecC
Q 020191 268 VSGQEDAVKLAKLLHAKF-----IVPMKNGDLDSKGFLASIIQSEGTVESFKCKIYKCYDRKFCYSC 329 (329)
Q Consensus 268 h~~~~ea~~~~~~l~~k~-----~ip~H~~~f~~~g~~~~~~~~~~~~~~f~~~~~~~~~~k~~~~~ 329 (329)
.|++++.+++++.|+|+. .+-+=+|.-..+.. .=.+.+.|+++ +.+++|+|
T Consensus 309 s~~pdel~~L~~~LnP~~epGRlTLI~RmGa~kV~~~----------LP~Li~aV~~~-G~~VvW~c 364 (474)
T PLN02291 309 KMDPEELVKLIEILNPQNKPGRLTIIVRMGAEKLRVK----------LPHLIRAVRRA-GQIVTWVS 364 (474)
T ss_pred CCCHHHHHHHHHHhCCCCCCceEEEEeccchHHHHHH----------HHHHHHHHHHc-CCceEEee
Confidence 358999999999998753 33333443222111 22334555555 78999999
Done!